AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene022891

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene022891.t1 MTR_8g013680 97.581 248 6 0 1 248 1 248 2.85e-171 472
MS.gene022891.t1 MTR_2g101370 84.553 246 38 0 3 248 4 249 6.20e-147 410
MS.gene022891.t1 MTR_5g012810 77.016 248 56 1 1 248 1 247 9.72e-121 344
MS.gene022891.t1 MTR_4g063090 62.832 226 81 1 24 246 26 251 1.50e-93 275
MS.gene022891.t1 MTR_1g006490 57.661 248 99 3 1 247 1 243 2.37e-91 270
MS.gene022891.t1 MTR_1g115405 57.085 247 104 2 4 248 6 252 3.68e-89 264
MS.gene022891.t1 MTR_1g006590 55.645 248 104 3 1 247 1 243 1.54e-86 257
MS.gene022891.t1 MTR_7g103030 60.643 249 96 2 1 248 3 250 1.89e-85 254
MS.gene022891.t1 MTR_7g023350 60.684 234 90 2 17 248 19 252 4.06e-85 254
MS.gene022891.t1 MTR_1g077540 50.000 250 118 1 5 247 7 256 2.89e-83 249
MS.gene022891.t1 MTR_6g069040 53.441 247 111 1 5 247 7 253 2.22e-78 237
MS.gene022891.t1 MTR_2g060360 45.041 242 132 1 1 242 1 241 9.93e-74 225
MS.gene022891.t1 MTR_7g101190 40.167 239 126 6 19 242 39 275 3.00e-39 137
MS.gene022891.t1 MTR_2g094270 38.431 255 121 8 9 238 30 273 4.95e-39 137
MS.gene022891.t1 MTR_3g118010 41.026 234 117 7 19 238 37 263 2.55e-38 135
MS.gene022891.t1 MTR_4g059390 39.076 238 122 7 19 238 39 271 2.78e-35 127
MS.gene022891.t1 MTR_5g063930 36.910 233 133 6 9 238 27 248 5.96e-35 125
MS.gene022891.t1 MTR_5g010150 37.500 240 132 7 11 238 46 279 4.53e-33 121
MS.gene022891.t1 MTR_5g082070 37.768 233 128 6 12 232 50 277 1.76e-31 117
MS.gene022891.t1 MTR_8g098375 35.833 240 136 7 11 238 46 279 4.93e-31 116
MS.gene022891.t1 MTR_2g094270 37.946 224 107 6 9 210 30 243 7.55e-31 115
MS.gene022891.t1 MTR_3g070210 36.820 239 133 8 12 238 50 282 1.61e-30 115
MS.gene022891.t1 MTR_2g017590 33.624 229 143 5 18 246 35 254 2.68e-29 111
MS.gene022891.t1 MTR_2g017620 34.498 229 139 5 10 238 17 234 6.07e-29 110
MS.gene022891.t1 MTR_4g415300 36.250 240 132 8 12 238 51 282 7.04e-29 110
MS.gene022891.t1 MTR_2g017620 34.498 229 139 5 10 238 31 248 9.08e-29 110
MS.gene022891.t1 MTR_4g006730 36.715 207 113 5 23 224 79 272 2.65e-28 109
MS.gene022891.t1 MTR_1g097840 35.398 226 126 6 23 242 78 289 3.79e-28 108
MS.gene022891.t1 MTR_3g008920 36.864 236 125 8 18 246 25 243 4.30e-28 108
MS.gene022891.t1 MTR_2g104940 36.715 207 113 4 23 224 84 277 1.58e-27 107
MS.gene022891.t1 MTR_2g017660 33.333 231 145 4 18 248 38 259 1.91e-27 106
MS.gene022891.t1 MTR_8g087710 32.751 229 145 4 18 246 38 257 5.09e-27 105
MS.gene022891.t1 MTR_1g095070 38.144 194 85 6 67 238 25 205 5.38e-27 104
MS.gene022891.t1 MTR_5g079570 36.087 230 129 8 18 243 39 254 2.11e-26 103
MS.gene022891.t1 MTR_2g017610 31.878 229 147 5 18 246 37 256 2.69e-26 103
MS.gene022891.t1 MTR_4g006730 35.859 198 109 5 32 224 1 185 7.46e-26 101
MS.gene022891.t1 MTR_2g017570 31.441 229 148 5 18 246 37 256 7.79e-26 102
MS.gene022891.t1 MTR_4g006630 35.859 198 109 5 32 224 1 185 8.73e-26 100
MS.gene022891.t1 MTR_8g087720 31.933 238 151 4 7 241 23 252 1.43e-25 101
MS.gene022891.t1 MTR_7g010650 34.483 232 137 6 13 241 31 250 1.86e-25 101
MS.gene022891.t1 MTR_1g070385 33.778 225 131 7 22 241 65 276 4.90e-25 103
MS.gene022891.t1 MTR_4g084880 32.314 229 148 3 18 246 34 255 5.17e-25 100
MS.gene022891.t1 MTR_2g017620 37.423 163 98 2 76 238 9 167 7.34e-23 92.4
MS.gene022891.t1 MTR_3g070210 35.468 203 119 5 14 207 50 249 2.27e-22 93.2
MS.gene022891.t1 MTR_1g095070 38.690 168 71 5 67 215 25 179 1.69e-20 86.3
MS.gene022891.t1 MTR_4g059390 37.647 170 91 4 19 177 39 204 1.79e-20 86.7
MS.gene022891.t1 MTR_5g010150 35.465 172 101 4 11 177 46 212 3.64e-18 80.5
MS.gene022891.t1 MTR_8g098375 33.714 175 106 4 11 180 46 215 1.68e-17 79.3
MS.gene022891.t1 MTR_4g415300 34.409 186 107 6 12 191 51 227 8.27e-16 74.3
MS.gene022891.t1 MTR_3g070210 34.118 170 102 5 12 176 50 214 8.69e-16 74.3
MS.gene022891.t1 MTR_4g006730 35.465 172 93 5 23 189 79 237 6.15e-15 72.8
MS.gene022891.t1 MTR_8g468730 35.922 103 47 2 141 243 5 88 1.40e-13 65.5
MS.gene022891.t1 MTR_1g097840 32.948 173 96 6 23 189 78 236 1.19e-11 63.5
MS.gene022891.t1 MTR_4g075570 28.516 256 146 8 7 235 33 278 1.57e-11 63.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene022891.t1 AT3G16240 80.800 250 46 2 1 248 1 250 2.21e-141 396
MS.gene022891.t1 AT5G47450 71.901 242 68 0 1 242 1 242 1.98e-121 346
MS.gene022891.t1 AT4G17340 74.486 243 61 1 1 243 1 242 5.06e-114 327
MS.gene022891.t1 AT2G36830 63.008 246 90 1 4 248 6 251 3.89e-102 297
MS.gene022891.t1 AT3G26520 62.295 244 90 2 7 248 10 253 4.21e-99 290
MS.gene022891.t1 AT4G01470 58.704 247 100 2 4 248 6 252 3.84e-92 272
MS.gene022891.t1 AT2G25810 55.061 247 107 2 1 247 1 243 6.57e-82 246
MS.gene022891.t1 AT1G73190 53.125 256 106 2 6 247 11 266 1.81e-80 243
MS.gene022891.t1 AT1G17810 51.765 255 110 2 6 247 11 265 1.25e-75 230
MS.gene022891.t1 AT3G47440 45.726 234 126 1 8 241 12 244 1.36e-68 212
MS.gene022891.t1 AT4G35100 40.909 242 120 8 11 238 32 264 2.19e-39 138
MS.gene022891.t1 AT4G35100 40.909 242 120 8 11 238 32 264 2.19e-39 138
MS.gene022891.t1 AT2G37170 38.340 253 138 8 10 246 28 278 1.05e-36 131
MS.gene022891.t1 AT2G37170 38.340 253 138 8 10 246 71 321 1.42e-36 132
MS.gene022891.t1 AT3G54820 39.407 236 124 8 19 238 38 270 6.28e-36 129
MS.gene022891.t1 AT5G60660 38.723 235 127 7 19 238 39 271 6.46e-36 129
MS.gene022891.t1 AT3G53420 38.934 244 131 7 19 246 39 280 2.99e-35 127
MS.gene022891.t1 AT3G53420 38.934 244 131 7 19 246 39 280 2.99e-35 127
MS.gene022891.t1 AT2G37180 38.618 246 129 8 19 246 37 278 6.26e-35 126
MS.gene022891.t1 AT2G16850 40.084 237 115 9 19 238 36 262 9.46e-35 125
MS.gene022891.t1 AT2G39010 38.819 237 124 7 19 238 38 270 1.29e-34 125
MS.gene022891.t1 AT4G00430 37.603 242 128 8 11 238 47 279 8.90e-32 118
MS.gene022891.t1 AT1G52180 64.516 93 33 0 119 211 29 121 2.59e-31 112
MS.gene022891.t1 AT1G01620 37.449 243 127 8 11 238 46 278 3.93e-31 116
MS.gene022891.t1 AT4G23400 37.657 239 132 8 11 238 47 279 6.71e-31 116
MS.gene022891.t1 AT3G61430 37.131 237 125 7 11 232 46 273 5.00e-30 114
MS.gene022891.t1 AT3G61430 37.131 237 125 7 11 232 46 273 5.00e-30 114
MS.gene022891.t1 AT2G45960 36.864 236 125 7 12 232 47 273 4.57e-29 111
MS.gene022891.t1 AT1G01620 38.693 199 101 6 55 238 14 206 3.79e-27 104
MS.gene022891.t1 AT4G10380 34.426 244 136 7 3 235 56 286 7.44e-27 105
MS.gene022891.t1 AT1G80760 34.978 223 127 5 23 240 84 293 7.57e-27 105
MS.gene022891.t1 AT4G19030 33.333 243 144 7 12 246 48 280 1.68e-26 104
MS.gene022891.t1 AT5G37820 32.900 231 140 4 19 246 43 261 4.28e-26 103
MS.gene022891.t1 AT5G37820 32.900 231 140 4 19 246 79 297 6.16e-26 103
MS.gene022891.t1 AT1G31885 33.333 240 136 6 18 246 42 268 7.91e-26 103
MS.gene022891.t1 AT5G37810 32.468 231 141 4 19 246 43 261 2.61e-25 101
MS.gene022891.t1 AT4G18910 33.745 243 143 7 12 246 45 277 7.33e-25 100
MS.gene022891.t1 AT3G06100 31.064 235 155 4 6 240 33 260 2.81e-24 98.2
MS.gene022891.t1 AT3G06100 32.420 219 141 4 22 240 1 212 3.34e-23 94.4
MS.gene022891.t1 AT1G31885 33.480 227 127 6 31 246 1 214 6.85e-23 94.4
MS.gene022891.t1 AT2G45960 36.364 209 113 6 19 215 52 252 1.48e-21 90.9
MS.gene022891.t1 AT2G45960 37.019 208 110 6 12 207 47 245 1.68e-21 91.3
MS.gene022891.t1 AT2G39010 36.905 168 93 4 19 176 38 202 7.67e-19 82.8
MS.gene022891.t1 AT3G06100 34.058 138 89 2 103 240 44 179 3.37e-16 74.7
MS.gene022891.t1 AT4G00430 34.831 178 101 5 11 181 47 216 5.29e-16 74.7
MS.gene022891.t1 AT2G34390 31.532 222 137 6 18 232 47 260 7.77e-15 72.8
MS.gene022891.t1 AT2G34390 32.110 218 133 6 22 232 9 218 1.75e-14 71.2
MS.gene022891.t1 AT4G19030 31.351 185 111 6 12 188 48 224 6.42e-12 63.5

Find 76 sgRNAs with CRISPR-Local

Find 99 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TACTGGATTGCTCAGCTTCT+TGG 0.181745 8.1:+83636128 MS.gene022891:CDS
GCAGTTGGTGCAAACATTTC+TGG 0.199557 8.1:+83636032 MS.gene022891:CDS
GTGCCTATTGCCCCTTTCTT+TGG 0.207140 8.1:-83636399 None:intergenic
ATGAACCCGGCAAGATCTTT+TGG 0.246847 8.1:+83636495 MS.gene022891:CDS
CTTATCGGTGGTGGTTTGGC+TGG 0.262849 8.1:+83636573 MS.gene022891:CDS
TTTGATGATTCTTTCAGTTT+TGG 0.267707 8.1:+83635365 MS.gene022891:CDS
TCCACGACAACTGGATCTAT+TGG 0.277829 8.1:+83636541 MS.gene022891:CDS
GTCAACCCTGCTGTCACCTT+TGG 0.291721 8.1:+83636062 MS.gene022891:CDS
GGTTTGGCTGGGCTTATCTA+TGG 0.292902 8.1:+83636585 MS.gene022891:CDS
TATTGGGCTGGGCCTCTTAT+CGG 0.322796 8.1:+83636558 MS.gene022891:CDS
GTCACCTTTGGATTGGCTCT+TGG 0.343040 8.1:+83636074 MS.gene022891:CDS
ACTGAAATCATCATAACATT+TGG 0.367367 8.1:+83636342 MS.gene022891:CDS
GCCTCTTATCGGTGGTGGTT+TGG 0.373518 8.1:+83636569 MS.gene022891:CDS
ATTGCCATTGGTTTCATTGT+TGG 0.375835 8.1:+83636432 MS.gene022891:CDS
GCCAAACCACCACCGATAAG+AGG 0.379268 8.1:-83636570 None:intergenic
GTGGAAATTTCCACGACAAC+TGG 0.386505 8.1:+83636532 MS.gene022891:CDS
TGAGATGAACTCAGCAATAT+AGG 0.386935 8.1:-83635399 None:intergenic
TTTGGGCCTGCAGTTGTTAG+TGG 0.387568 8.1:+83636513 MS.gene022891:CDS
CCACGACAACTGGATCTATT+GGG 0.398062 8.1:+83636542 MS.gene022891:CDS
AAGATGGCTGGCATAGCATT+TGG 0.399858 8.1:+83635338 None:intergenic
CCAAGCCTCCAGTGACAAAC+TGG 0.399981 8.1:-83636175 None:intergenic
AATCATCATAACATTTGGTT+TGG 0.400689 8.1:+83636347 MS.gene022891:CDS
GCAGCTGAAGTAGGACCTAT+TGG 0.405581 8.1:+83636309 MS.gene022891:CDS
TTTCTTCTCCAGTTTGTCAC+TGG 0.408023 8.1:+83636167 MS.gene022891:CDS
CCCTGCTGTCACCTTTGGAT+TGG 0.409091 8.1:+83636067 MS.gene022891:CDS
ACCTTTGGATTGGCTCTTGG+TGG 0.411041 8.1:+83636077 MS.gene022891:CDS
TTCATTGATCCGCCAGAGAA+TGG 0.416630 8.1:-83636477 None:intergenic
GATCCAAAGAAAGGGGCAAT+AGG 0.421974 8.1:+83636396 MS.gene022891:CDS
CCAGTTTGTCACTGGAGGCT+TGG 0.423778 8.1:+83636175 MS.gene022891:CDS
CATTGTTGGTGCCAACATAT+TGG 0.446875 8.1:+83636446 MS.gene022891:CDS
TTATCGGTGGTGGTTTGGCT+GGG 0.451028 8.1:+83636574 MS.gene022891:CDS
GCCAATCCAAAGGTGACAGC+AGG 0.452295 8.1:-83636068 None:intergenic
GCAGGCCCAAAAGATCTTGC+CGG 0.452714 8.1:-83636501 None:intergenic
TTGGCTGCAGGCCCATTCTC+TGG 0.453121 8.1:+83636465 MS.gene022891:CDS
TCATCACTGGTATCTTCTAC+TGG 0.458106 8.1:+83636111 MS.gene022891:CDS
GACAACTGGATCTATTGGGC+TGG 0.462914 8.1:+83636546 MS.gene022891:CDS
TCAGTAACAACTCCTCCAAT+AGG 0.466361 8.1:-83636324 None:intergenic
CTAGCAGTTGCTGTTTGCCA+TGG 0.466889 8.1:+83635987 MS.gene022891:CDS
CTTCTCCAGTTTGTCACTGG+AGG 0.467570 8.1:+83636170 MS.gene022891:CDS
TCATTGATCCGCCAGAGAAT+GGG 0.485491 8.1:-83636476 None:intergenic
GTTGGTTCAGCCATAGCCTA+TGG 0.499410 8.1:+83635446 MS.gene022891:CDS
ACAGTTGCACCCATTGCCAT+TGG 0.503181 8.1:+83636420 MS.gene022891:CDS
ACAATGAAACCAATGGCAAT+GGG 0.510446 8.1:-83636429 None:intergenic
TCAGCTGCCACACTGTGGAT+TGG 0.510734 8.1:-83636294 None:intergenic
CAGCAGCTGATCCAAAGAAA+GGG 0.511871 8.1:+83636388 MS.gene022891:CDS
TTTCTTTGGATCAGCTGCTG+TGG 0.517451 8.1:-83636385 None:intergenic
GATGCAGCTCTTGATCCAGC+AGG 0.519356 8.1:+83635960 MS.gene022891:CDS
AATCAAAAGTCACTAGAAAG+AGG 0.520771 8.1:-83636636 None:intergenic
GCTGGGCCTCTTATCGGTGG+TGG 0.521426 8.1:+83636564 MS.gene022891:CDS
AACAATGAAACCAATGGCAA+TGG 0.533814 8.1:-83636430 None:intergenic
ACAGCAGCTGATCCAAAGAA+AGG 0.538310 8.1:+83636387 MS.gene022891:CDS
GTAGAAGATACCAGTGATGA+TGG 0.540575 8.1:-83636108 None:intergenic
CAGGCCCAAAAGATCTTGCC+GGG 0.541468 8.1:-83636500 None:intergenic
TAGAAACTTCTGAAGATGGC+TGG 0.543796 8.1:+83635326 None:intergenic
GCAACTGCTAGTAACCCTGC+TGG 0.551593 8.1:-83635975 None:intergenic
GGACAGATCACCATCATCAC+TGG 0.553513 8.1:+83636098 MS.gene022891:CDS
AGAAAACTAACCATAGGCTA+TGG 0.555965 8.1:-83635456 None:intergenic
GGTGCCAACATATTGGCTGC+AGG 0.556816 8.1:+83636453 MS.gene022891:CDS
CTCTGGCGGATCAATGAACC+CGG 0.559750 8.1:+83636482 MS.gene022891:CDS
CCCAATAGATCCAGTTGTCG+TGG 0.571271 8.1:-83636542 None:intergenic
ACAACTGGATCTATTGGGCT+GGG 0.575806 8.1:+83636547 MS.gene022891:CDS
AAATTTCCACTAACAACTGC+AGG 0.577339 8.1:-83636519 None:intergenic
GAGAAGAAAACATGCAACAA+TGG 0.578089 8.1:-83636153 None:intergenic
CACAGTGTGGCAGCTGAAGT+AGG 0.582308 8.1:+83636300 MS.gene022891:CDS
TGGGCTGGGCCTCTTATCGG+TGG 0.584633 8.1:+83636561 MS.gene022891:CDS
TGGGCCTGCAGCCAATATGT+TGG 0.594871 8.1:-83636457 None:intergenic
GCTGCAGGCCCATTCTCTGG+CGG 0.598788 8.1:+83636468 MS.gene022891:CDS
GCTGAAGTAGGACCTATTGG+AGG 0.620559 8.1:+83636312 MS.gene022891:CDS
GGCACCAACAATGAAACCAA+TGG 0.627058 8.1:-83636436 None:intergenic
CCAATCCAAAGGTGACAGCA+GGG 0.629836 8.1:-83636067 None:intergenic
AGCAGCTGATCCAAAGAAAG+GGG 0.630978 8.1:+83636389 MS.gene022891:CDS
TCCACCAAGAGCCAATCCAA+AGG 0.646031 8.1:-83636078 None:intergenic
ATGCAGCTCTTGATCCAGCA+GGG 0.652800 8.1:+83635961 MS.gene022891:CDS
GTTGGTGCAAACATTTCTGG+TGG 0.676373 8.1:+83636035 MS.gene022891:CDS
CTACTTCAGCTGCCACACTG+TGG 0.679427 8.1:-83636299 None:intergenic
GGAAACTCCAATCCACAGTG+TGG 0.749398 8.1:+83636287 MS.gene022891:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ACTATAATTCTAGTAGTAAT+GGG - chr8.1:83635523-83635542 None:intergenic 20.0%
!! TACTATAATTCTAGTAGTAA+TGG - chr8.1:83635524-83635543 None:intergenic 20.0%
!!! AGTAACTTCATTTTATAAGT+TGG + chr8.1:83635781-83635800 MS.gene022891:intron 20.0%
!!! TTCATTTTATAAGTTGGAAA+GGG + chr8.1:83635787-83635806 MS.gene022891:intron 20.0%
! AATCATCATAACATTTGGTT+TGG + chr8.1:83636347-83636366 MS.gene022891:CDS 25.0%
! ACTGAAATCATCATAACATT+TGG + chr8.1:83636342-83636361 MS.gene022891:CDS 25.0%
! CATCAATAATTCAACTTCAA+TGG - chr8.1:83635556-83635575 None:intergenic 25.0%
! CTATAATTCTAGTAGTAATG+GGG - chr8.1:83635522-83635541 None:intergenic 25.0%
! GAAGTTACTAATATCAGAAA+CGG - chr8.1:83635770-83635789 None:intergenic 25.0%
!! TTGTTAAAGACGTTCAATTT+TGG + chr8.1:83635726-83635745 MS.gene022891:intron 25.0%
!!! CTTCATTTTATAAGTTGGAA+AGG + chr8.1:83635786-83635805 MS.gene022891:intron 25.0%
!!! TAATATTGTGATTTGTTGAC+AGG + chr8.1:83636266-83636285 MS.gene022891:intron 25.0%
!!! TTTGATGATTCTTTCAGTTT+TGG + chr8.1:83635365-83635384 MS.gene022891:CDS 25.0%
AAGAAGAGAAAACTAACCAT+AGG - chr8.1:83635465-83635484 None:intergenic 30.0%
GAACGTCTTTAACAATTAGA+CGG - chr8.1:83635721-83635740 None:intergenic 30.0%
TAAACGTTAGACGTCAAAAT+TGG + chr8.1:83635620-83635639 MS.gene022891:intron 30.0%
TTGTAACCTCAAGAGATAAA+CGG - chr8.1:83635823-83635842 None:intergenic 30.0%
!! TGTTGTTTGACTTAATTTGC+AGG + chr8.1:83635924-83635943 MS.gene022891:intron 30.0%
!!! TTTCAGTTTTGGCTCAATTA+AGG + chr8.1:83635376-83635395 MS.gene022891:CDS 30.0%
AAATTTCCACTAACAACTGC+AGG - chr8.1:83636522-83636541 None:intergenic 35.0%
AACAATGAAACCAATGGCAA+TGG - chr8.1:83636433-83636452 None:intergenic 35.0%
ACAATGAAACCAATGGCAAT+GGG - chr8.1:83636432-83636451 None:intergenic 35.0%
AGAAAACTAACCATAGGCTA+TGG - chr8.1:83635459-83635478 None:intergenic 35.0%
GAGAAGAAAACATGCAACAA+TGG - chr8.1:83636156-83636175 None:intergenic 35.0%
TGAGATGAACTCAGCAATAT+AGG - chr8.1:83635402-83635421 None:intergenic 35.0%
TTACAACCGTTTATCTCTTG+AGG + chr8.1:83635814-83635833 MS.gene022891:intron 35.0%
! CAACAAAAAGTGCAAAACCA+TGG - chr8.1:83636007-83636026 None:intergenic 35.0%
! TAATTCTAGTAGTAATGGGG+TGG - chr8.1:83635519-83635538 None:intergenic 35.0%
!! ATTGCCATTGGTTTCATTGT+TGG + chr8.1:83636432-83636451 MS.gene022891:CDS 35.0%
!!! ACTTTGCTCTTTGTTTTTGC+TGG + chr8.1:83635422-83635441 MS.gene022891:CDS 35.0%
GTAGAAGATACCAGTGATGA+TGG - chr8.1:83636111-83636130 None:intergenic 40.0%
TCAGTAACAACTCCTCCAAT+AGG - chr8.1:83636327-83636346 None:intergenic 40.0%
TCATCACTGGTATCTTCTAC+TGG + chr8.1:83636111-83636130 MS.gene022891:CDS 40.0%
TTTCTTCTCCAGTTTGTCAC+TGG + chr8.1:83636167-83636186 MS.gene022891:CDS 40.0%
!! CATTGTTGGTGCCAACATAT+TGG + chr8.1:83636446-83636465 MS.gene022891:CDS 40.0%
!! CTTTTTGTTGCTGTTGCAGT+TGG + chr8.1:83636017-83636036 MS.gene022891:CDS 40.0%
!!! CTCTTTGTTTTTGCTGGTGT+TGG + chr8.1:83635428-83635447 MS.gene022891:CDS 40.0%
ACAACTGGATCTATTGGGCT+GGG + chr8.1:83636547-83636566 MS.gene022891:CDS 45.0%
ACAGCAGCTGATCCAAAGAA+AGG + chr8.1:83636387-83636406 MS.gene022891:CDS 45.0%
AGCAGCTGATCCAAAGAAAG+GGG + chr8.1:83636389-83636408 MS.gene022891:CDS 45.0%
CAGCAGCTGATCCAAAGAAA+GGG + chr8.1:83636388-83636407 MS.gene022891:CDS 45.0%
CCACGACAACTGGATCTATT+GGG + chr8.1:83636542-83636561 MS.gene022891:CDS 45.0%
GATCCAAAGAAAGGGGCAAT+AGG + chr8.1:83636396-83636415 MS.gene022891:CDS 45.0%
GGCACCAACAATGAAACCAA+TGG - chr8.1:83636439-83636458 None:intergenic 45.0%
GTGGAAATTTCCACGACAAC+TGG + chr8.1:83636532-83636551 MS.gene022891:CDS 45.0%
TACTGGATTGCTCAGCTTCT+TGG + chr8.1:83636128-83636147 MS.gene022891:CDS 45.0%
TCATTGATCCGCCAGAGAAT+GGG - chr8.1:83636479-83636498 None:intergenic 45.0%
TCCACGACAACTGGATCTAT+TGG + chr8.1:83636541-83636560 MS.gene022891:CDS 45.0%
TTCATTGATCCGCCAGAGAA+TGG - chr8.1:83636480-83636499 None:intergenic 45.0%
TTTCTTTGGATCAGCTGCTG+TGG - chr8.1:83636388-83636407 None:intergenic 45.0%
! ATGAACCCGGCAAGATCTTT+TGG + chr8.1:83636495-83636514 MS.gene022891:CDS 45.0%
! GCAGTTGGTGCAAACATTTC+TGG + chr8.1:83636032-83636051 MS.gene022891:CDS 45.0%
! GTTGGTGCAAACATTTCTGG+TGG + chr8.1:83636035-83636054 MS.gene022891:CDS 45.0%
! TGAACCCGGCAAGATCTTTT+GGG + chr8.1:83636496-83636515 MS.gene022891:CDS 45.0%
ACAGTTGCACCCATTGCCAT+TGG + chr8.1:83636420-83636439 MS.gene022891:CDS 50.0%
ATGCAGCTCTTGATCCAGCA+GGG + chr8.1:83635961-83635980 MS.gene022891:CDS 50.0%
CCAATCCAAAGGTGACAGCA+GGG - chr8.1:83636070-83636089 None:intergenic 50.0%
CCCAATAGATCCAGTTGTCG+TGG - chr8.1:83636545-83636564 None:intergenic 50.0%
CTTCTCCAGTTTGTCACTGG+AGG + chr8.1:83636170-83636189 MS.gene022891:CDS 50.0%
GACAACTGGATCTATTGGGC+TGG + chr8.1:83636546-83636565 MS.gene022891:CDS 50.0%
GCAGCTGAAGTAGGACCTAT+TGG + chr8.1:83636309-83636328 MS.gene022891:CDS 50.0%
GCTGAAGTAGGACCTATTGG+AGG + chr8.1:83636312-83636331 MS.gene022891:CDS 50.0%
GGAAACTCCAATCCACAGTG+TGG + chr8.1:83636287-83636306 MS.gene022891:intron 50.0%
GGACAGATCACCATCATCAC+TGG + chr8.1:83636098-83636117 MS.gene022891:CDS 50.0%
GGTTTGGCTGGGCTTATCTA+TGG + chr8.1:83636585-83636604 MS.gene022891:CDS 50.0%
GTGCCTATTGCCCCTTTCTT+TGG - chr8.1:83636402-83636421 None:intergenic 50.0%
TCCACCAAGAGCCAATCCAA+AGG - chr8.1:83636081-83636100 None:intergenic 50.0%
TTTGGGCCTGCAGTTGTTAG+TGG + chr8.1:83636513-83636532 MS.gene022891:CDS 50.0%
! CTAGTAGTAATGGGGTGGCA+GGG - chr8.1:83635514-83635533 None:intergenic 50.0%
! GTTGGTTCAGCCATAGCCTA+TGG + chr8.1:83635446-83635465 MS.gene022891:CDS 50.0%
! TATTGGGCTGGGCCTCTTAT+CGG + chr8.1:83636558-83636577 MS.gene022891:CDS 50.0%
! TCTAGTAGTAATGGGGTGGC+AGG - chr8.1:83635515-83635534 None:intergenic 50.0%
! TTATCGGTGGTGGTTTGGCT+GGG + chr8.1:83636574-83636593 MS.gene022891:CDS 50.0%
!! ACCTTTGGATTGGCTCTTGG+TGG + chr8.1:83636077-83636096 MS.gene022891:CDS 50.0%
!! CTAGCAGTTGCTGTTTGCCA+TGG + chr8.1:83635987-83636006 MS.gene022891:CDS 50.0%
!! GTCACCTTTGGATTGGCTCT+TGG + chr8.1:83636074-83636093 MS.gene022891:CDS 50.0%
CACAGTGTGGCAGCTGAAGT+AGG + chr8.1:83636300-83636319 MS.gene022891:CDS 55.0%
CAGGCCCAAAAGATCTTGCC+GGG - chr8.1:83636503-83636522 None:intergenic 55.0%
CCAAGCCTCCAGTGACAAAC+TGG - chr8.1:83636178-83636197 None:intergenic 55.0%
CCAGTTTGTCACTGGAGGCT+TGG + chr8.1:83636175-83636194 MS.gene022891:CDS 55.0%
CCCTGCTGTCACCTTTGGAT+TGG + chr8.1:83636067-83636086 MS.gene022891:CDS 55.0%
CTACTTCAGCTGCCACACTG+TGG - chr8.1:83636302-83636321 None:intergenic 55.0%
GATGCAGCTCTTGATCCAGC+AGG + chr8.1:83635960-83635979 MS.gene022891:CDS 55.0%
GCAACTGCTAGTAACCCTGC+TGG - chr8.1:83635978-83635997 None:intergenic 55.0%
GCAGGCCCAAAAGATCTTGC+CGG - chr8.1:83636504-83636523 None:intergenic 55.0%
GCCAAACCACCACCGATAAG+AGG - chr8.1:83636573-83636592 None:intergenic 55.0%
GCCAATCCAAAGGTGACAGC+AGG - chr8.1:83636071-83636090 None:intergenic 55.0%
GTCAACCCTGCTGTCACCTT+TGG + chr8.1:83636062-83636081 MS.gene022891:CDS 55.0%
TCAGCTGCCACACTGTGGAT+TGG - chr8.1:83636297-83636316 None:intergenic 55.0%
TGGGCCTGCAGCCAATATGT+TGG - chr8.1:83636460-83636479 None:intergenic 55.0%
! AGTAATGGGGTGGCAGGGTT+AGG - chr8.1:83635509-83635528 None:intergenic 55.0%
! CTCTGGCGGATCAATGAACC+CGG + chr8.1:83636482-83636501 MS.gene022891:CDS 55.0%
! CTTATCGGTGGTGGTTTGGC+TGG + chr8.1:83636573-83636592 MS.gene022891:CDS 55.0%
! GCCTCTTATCGGTGGTGGTT+TGG + chr8.1:83636569-83636588 MS.gene022891:CDS 55.0%
! GGTGCCAACATATTGGCTGC+AGG + chr8.1:83636453-83636472 MS.gene022891:CDS 55.0%
TTGGCTGCAGGCCCATTCTC+TGG + chr8.1:83636465-83636484 MS.gene022891:CDS 60.0%
GCTGCAGGCCCATTCTCTGG+CGG + chr8.1:83636468-83636487 MS.gene022891:CDS 65.0%
GCTGGGCCTCTTATCGGTGG+TGG + chr8.1:83636564-83636583 MS.gene022891:CDS 65.0%
! TGGGCTGGGCCTCTTATCGG+TGG + chr8.1:83636561-83636580 MS.gene022891:CDS 65.0%


Chromosome Type Strat End Strand Name
chr8.1 gene 83635341 83636656 83635341 ID=MS.gene022891
chr8.1 mRNA 83635341 83636656 83635341 ID=MS.gene022891.t1;Parent=MS.gene022891
chr8.1 exon 83635341 83635467 83635341 ID=MS.gene022891.t1.exon1;Parent=MS.gene022891.t1
chr8.1 CDS 83635341 83635467 83635341 ID=cds.MS.gene022891.t1;Parent=MS.gene022891.t1
chr8.1 exon 83635946 83636196 83635946 ID=MS.gene022891.t1.exon2;Parent=MS.gene022891.t1
chr8.1 CDS 83635946 83636196 83635946 ID=cds.MS.gene022891.t1;Parent=MS.gene022891.t1
chr8.1 exon 83636288 83636656 83636288 ID=MS.gene022891.t1.exon3;Parent=MS.gene022891.t1
chr8.1 CDS 83636288 83636656 83636288 ID=cds.MS.gene022891.t1;Parent=MS.gene022891.t1
Gene Sequence

>MS.gene022891

ATGGCTGGCATAGCATTTGGAAGATTTGATGATTCTTTCAGTTTTGGCTCAATTAAGGCCTATATTGCTGAGTTCATCTCAACTTTGCTCTTTGTTTTTGCTGGTGTTGGTTCAGCCATAGCCTATGGTTAGTTTTCTCTTCTTTACAAGATAAATATACAATGTCCTAACCCTGCCACCCCATTACTACTAGAATTATAGTAAAGTTTTCACCATTGAAGTTGAATTATTGATGAAAATTAGATCAGAAAAGATAAAATTTATGTCAAAGTTCGTTGATAAACGTTAGACGTCAAAATTGGAGATTTATTTAATTTTTTCTGTGAGTAATTCGACAAAAATTTAGAGACATAAAAAGACAAAATACATCTTTATTTCCGTCTAATTGTTAAAGACGTTCAATTTTGGCGAGCAATTTTATTTTTTCCGTTTCTGATATTAGTAACTTCATTTTATAAGTTGGAAAGGGCATTTTACAACCGTTTATCTCTTGAGGTTACAAGTTCAAACTCTTACTATTGAAAAGAAGAAAAAAAAATGAAAATAAGAGTATTTAAATTTCTTATTGAATAACAAAGATTATTGTTGTTTGACTTAATTTGCAGGTAAGTTGACATCAGATGCAGCTCTTGATCCAGCAGGGTTACTAGCAGTTGCTGTTTGCCATGGTTTTGCACTTTTTGTTGCTGTTGCAGTTGGTGCAAACATTTCTGGTGGTCATGTCAACCCTGCTGTCACCTTTGGATTGGCTCTTGGTGGACAGATCACCATCATCACTGGTATCTTCTACTGGATTGCTCAGCTTCTTGGCTCCATTGTTGCATGTTTTCTTCTCCAGTTTGTCACTGGAGGCTTGGTAAGTTCTTATCATAATGTTGAGTTCATTATAGTTAAGAATTAAGATTATAATATAATGTGCTGAAATTAATATTGTGATTTGTTGACAGGAAACTCCAATCCACAGTGTGGCAGCTGAAGTAGGACCTATTGGAGGAGTTGTTACTGAAATCATCATAACATTTGGTTTGGTATACACAGTTTATGCCACAGCAGCTGATCCAAAGAAAGGGGCAATAGGCACAGTTGCACCCATTGCCATTGGTTTCATTGTTGGTGCCAACATATTGGCTGCAGGCCCATTCTCTGGCGGATCAATGAACCCGGCAAGATCTTTTGGGCCTGCAGTTGTTAGTGGAAATTTCCACGACAACTGGATCTATTGGGCTGGGCCTCTTATCGGTGGTGGTTTGGCTGGGCTTATCTATGGCAACGTGTTCATGCGCACTGAACATGCACCTCTTTCTAGTGACTTTTGA
Protein sequence

>MS.gene022891.t1

MAGIAFGRFDDSFSFGSIKAYIAEFISTLLFVFAGVGSAIAYGKLTSDAALDPAGLLAVAVCHGFALFVAVAVGANISGGHVNPAVTFGLALGGQITIITGIFYWIAQLLGSIVACFLLQFVTGGLETPIHSVAAEVGPIGGVVTEIIITFGLVYTVYATAADPKKGAIGTVAPIAIGFIVGANILAAGPFSGGSMNPARSFGPAVVSGNFHDNWIYWAGPLIGGGLAGLIYGNVFMRTEHAPLSSDF