AlfalfaGEDB | MS.gene019314

M. sativa cultivar XinJiangDaYe / MS.gene019314

KEGG: K09872
GO: GO:0003674 GO:0005215 GO:0005575 GO:0006810 GO:0008150 GO:0015267 GO:0016020 GO:0022803 GO:0022857 GO:0051179 GO:0051234 GO:0055085 GO:0110165
PFAM: PF00230.23

Nr:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene019314.t1	XP_003611079.1	99.3	287	2	0	1	287	1	287	3.10E-160	574.3

Swissprot:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene019314.t1	Q7XSQ9	88.4	285	31	2	3	286	4	287	2.3e-143	509.6

Trembl:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene019314.t1	G7KC21	99.3	287	2	0	1	287	1	287	2.2e-160	574.3

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network:

Gene1	Gene2	correlation coefficient	p_value	FDR

PPI:

Gene1	Gene2	Type
MS.gene021061	MS.gene019314	PPI
MS.gene07481	MS.gene019314	PPI
MS.gene019314	MS.gene006958	PPI
MS.gene01627	MS.gene019314	PPI
MS.gene32445	MS.gene019314	PPI
MS.gene019314	MS.gene006957	PPI
MS.gene005974	MS.gene019314	PPI
MS.gene059378	MS.gene019314	PPI
MS.gene019314	MS.gene67362	PPI
MS.gene021394	MS.gene019314	PPI
MS.gene019314	MS.gene03090	PPI
MS.gene019314	MS.gene067014	PPI
MS.gene019314	MS.gene36342	PPI
MS.gene019314	MS.gene059531	PPI
MS.gene059379	MS.gene019314	PPI
MS.gene019314	MS.gene21620	PPI
MS.gene002640	MS.gene019314	PPI
MS.gene019314	MS.gene33486	PPI
MS.gene76526	MS.gene019314	PPI
MS.gene019314	MS.gene048817	PPI
MS.gene36973	MS.gene019314	PPI
MS.gene004322	MS.gene019314	PPI
MS.gene019314	MS.gene059380	PPI
MS.gene019314	MS.gene069812	PPI
MS.gene019314	MS.gene79774	PPI
MS.gene83316	MS.gene019314	PPI
MS.gene019314	MS.gene01625	PPI
MS.gene072269	MS.gene019314	PPI
MS.gene019314	MS.gene89899	PPI
MS.gene27853	MS.gene019314	PPI
MS.gene004953	MS.gene019314	PPI
MS.gene019314	MS.gene065973	PPI
MS.gene025056	MS.gene019314	PPI
MS.gene062190	MS.gene019314	PPI
MS.gene025449	MS.gene019314	PPI
MS.gene019314	MS.gene004324	PPI
MS.gene019314	MS.gene004088	PPI
MS.gene065972	MS.gene019314	PPI
MS.gene019314	MS.gene069860	PPI
MS.gene019314	MS.gene052743	PPI
MS.gene019314	MS.gene014206	PPI
MS.gene49432	MS.gene019314	PPI
MS.gene019314	MS.gene023621	PPI
MS.gene019314	MS.gene85141	PPI
MS.gene85141	MS.gene019314	PPI
MS.gene61127	MS.gene019314	PPI
MS.gene32446	MS.gene019314	PPI
MS.gene72127	MS.gene019314	PPI
MS.gene31709	MS.gene019314	PPI
MS.gene71137	MS.gene019314	PPI
MS.gene34830	MS.gene019314	PPI
MS.gene019314	MS.gene023622	PPI
MS.gene019314	MS.gene042849	PPI
MS.gene27852	MS.gene019314	PPI
MS.gene006960	MS.gene019314	PPI
MS.gene019314	MS.gene002639	PPI
MS.gene72129	MS.gene019314	PPI
MS.gene021393	MS.gene019314	PPI
MS.gene019314	MS.gene037437	PPI
MS.gene019314	MS.gene006961	PPI
MS.gene03094	MS.gene019314	PPI
MS.gene019314	MS.gene002643	PPI
MS.gene019314	MS.gene01624	PPI
MS.gene019314	MS.gene03121	PPI
MS.gene019314	MS.gene93201	PPI
MS.gene022891	MS.gene019314	PPI
MS.gene006959	MS.gene019314	PPI
MS.gene019314	MS.gene024637	PPI
MS.gene019314	MS.gene022891	PPI
MS.gene072777	MS.gene019314	PPI
MS.gene03093	MS.gene019314	PPI
MS.gene019314	MS.gene54792	PPI
MS.gene024637	MS.gene019314	PPI
MS.gene019314	MS.gene004321	PPI
MS.gene019314	MS.gene72129	PPI
MS.gene014206	MS.gene019314	PPI
MS.gene019314	MS.gene36789	PPI
MS.gene34032	MS.gene019314	PPI

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene019314.t1	MTR_5g010150	99.303	287	2	0	1	287	1	287	0.0	580
MS.gene019314.t1	MTR_8g098375	93.706	286	18	0	1	286	1	286	0.0	553
MS.gene019314.t1	MTR_4g415300	84.722	288	40	2	2	286	3	289	3.84e-180	498
MS.gene019314.t1	MTR_5g082070	84.965	286	41	1	3	286	4	289	6.87e-180	497
MS.gene019314.t1	MTR_3g070210	84.669	287	42	1	3	287	4	290	3.10e-179	495
MS.gene019314.t1	MTR_3g070210	84.170	259	39	1	3	259	4	262	4.24e-158	441
MS.gene019314.t1	MTR_5g010150	99.524	210	1	0	1	210	1	210	3.44e-153	427
MS.gene019314.t1	MTR_8g098375	86.900	229	28	1	1	227	1	229	9.64e-146	409
MS.gene019314.t1	MTR_7g101190	74.525	263	60	2	29	285	16	277	1.12e-140	398
MS.gene019314.t1	MTR_2g094270	68.889	270	76	2	23	285	11	279	7.66e-136	385
MS.gene019314.t1	MTR_4g059390	68.914	267	76	2	25	285	12	277	1.43e-131	375
MS.gene019314.t1	MTR_3g118010	69.057	265	81	1	21	285	6	269	2.90e-131	374
MS.gene019314.t1	MTR_3g070210	82.857	210	34	1	3	210	4	213	3.34e-124	353
MS.gene019314.t1	MTR_4g415300	81.604	212	35	2	2	210	3	213	4.00e-123	351
MS.gene019314.t1	MTR_2g094270	69.295	241	66	2	23	256	11	250	9.32e-120	344
MS.gene019314.t1	MTR_1g095070	76.316	190	44	1	96	285	23	211	1.56e-103	301
MS.gene019314.t1	MTR_1g095070	77.019	161	36	1	96	256	23	182	5.07e-87	258
MS.gene019314.t1	MTR_4g059390	66.667	192	57	2	25	210	12	202	1.68e-85	254
MS.gene019314.t1	MTR_1g077540	35.776	232	130	6	52	278	21	238	1.06e-32	121
MS.gene019314.t1	MTR_6g069040	39.834	241	127	8	52	287	21	248	1.24e-32	120
MS.gene019314.t1	MTR_2g101370	35.897	234	135	5	47	277	15	236	2.67e-32	120
MS.gene019314.t1	MTR_8g013680	36.752	234	131	6	46	274	11	232	6.12e-32	119
MS.gene019314.t1	MTR_1g115405	34.836	244	139	7	41	278	10	239	5.75e-29	111
MS.gene019314.t1	MTR_7g103030	33.745	243	137	7	42	277	11	236	4.79e-28	108
MS.gene019314.t1	MTR_7g023350	34.426	244	140	7	41	278	10	239	5.44e-28	108
MS.gene019314.t1	MTR_4g063090	32.773	238	145	5	41	275	10	235	1.27e-27	107
MS.gene019314.t1	MTR_1g006490	34.199	231	125	7	52	275	19	229	1.57e-27	107
MS.gene019314.t1	MTR_5g012810	37.168	226	126	6	52	274	19	231	1.45e-26	104
MS.gene019314.t1	MTR_1g006590	33.906	233	123	8	52	275	19	229	3.32e-26	103
MS.gene019314.t1	MTR_2g060360	32.365	241	125	9	52	278	19	235	2.29e-20	88.2
MS.gene019314.t1	MTR_5g079570	29.688	192	122	4	84	275	68	246	3.61e-19	85.1
MS.gene019314.t1	MTR_8g087710	29.289	239	145	7	43	277	30	248	8.16e-19	84.3
MS.gene019314.t1	MTR_2g017590	32.203	236	137	7	55	287	39	254	9.03e-19	84.3
MS.gene019314.t1	MTR_5g063930	27.632	228	150	5	47	274	32	244	1.24e-18	83.6
MS.gene019314.t1	MTR_4g084880	25.664	226	148	5	55	277	38	246	1.87e-18	83.2
MS.gene019314.t1	MTR_2g017660	28.634	227	146	6	41	267	28	238	5.40e-18	82.0
MS.gene019314.t1	MTR_3g008920	31.250	192	119	4	84	275	54	232	6.01e-18	81.6
MS.gene019314.t1	MTR_2g017620	30.705	241	144	7	50	287	22	242	1.11e-17	80.9
MS.gene019314.t1	MTR_2g017620	30.705	241	144	7	50	287	36	256	1.35e-17	80.9
MS.gene019314.t1	MTR_4g075570	28.205	195	118	7	99	279	95	281	4.18e-17	80.5
MS.gene019314.t1	MTR_4g075590	26.316	247	163	7	44	279	29	267	5.29e-17	80.1
MS.gene019314.t1	MTR_8g087720	27.197	239	157	6	49	287	35	256	6.92e-17	79.0
MS.gene019314.t1	MTR_2g017610	30.043	233	146	6	55	287	41	256	6.96e-17	79.0
MS.gene019314.t1	MTR_2g017570	29.614	233	147	6	55	287	41	256	1.58e-16	78.2
MS.gene019314.t1	MTR_4g006730	28.302	212	135	6	56	267	79	273	6.82e-16	76.6
MS.gene019314.t1	MTR_7g010650	27.966	236	150	7	50	284	35	251	6.92e-16	76.3
MS.gene019314.t1	MTR_2g104940	30.516	213	129	7	56	267	84	278	2.09e-15	75.5
MS.gene019314.t1	MTR_4g006630	29.609	179	112	4	89	267	22	186	5.42e-14	70.1
MS.gene019314.t1	MTR_4g006730	29.609	179	112	4	89	267	22	186	5.69e-14	69.7
MS.gene019314.t1	MTR_2g017620	31.053	190	111	5	101	287	3	175	1.13e-13	68.6
MS.gene019314.t1	MTR_1g097840	28.319	226	142	8	56	279	78	285	7.92e-13	67.8
MS.gene019314.t1	MTR_1g070385	26.872	227	143	7	49	272	59	265	6.13e-12	66.2

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene019314.t1	AT4G00430	86.667	285	37	1	3	287	4	287	0.0	507
MS.gene019314.t1	AT2G45960	85.965	285	38	2	3	287	4	286	0.0	499
MS.gene019314.t1	AT4G23400	87.324	284	35	1	3	286	4	286	1.12e-175	486
MS.gene019314.t1	AT1G01620	87.018	285	35	2	3	287	4	286	1.97e-174	483
MS.gene019314.t1	AT3G61430	85.614	285	39	2	3	287	4	286	3.67e-172	477
MS.gene019314.t1	AT3G61430	85.614	285	39	2	3	287	4	286	3.67e-172	477
MS.gene019314.t1	AT2G45960	85.827	254	34	2	3	256	4	255	1.46e-159	445
MS.gene019314.t1	AT2G45960	85.827	254	34	2	3	256	4	255	4.39e-158	442
MS.gene019314.t1	AT1G01620	89.302	215	22	1	73	287	1	214	1.44e-138	389
MS.gene019314.t1	AT2G37170	72.692	260	64	3	27	280	55	313	4.41e-135	385
MS.gene019314.t1	AT2G37170	72.692	260	64	3	27	280	12	270	1.12e-134	382
MS.gene019314.t1	AT4G35100	71.483	263	74	1	23	285	9	270	1.73e-134	382
MS.gene019314.t1	AT4G35100	71.483	263	74	1	23	285	9	270	1.73e-134	382
MS.gene019314.t1	AT3G53420	72.692	260	64	2	27	280	14	272	2.09e-134	382
MS.gene019314.t1	AT3G53420	72.692	260	64	2	27	280	14	272	2.09e-134	382
MS.gene019314.t1	AT3G54820	68.000	275	81	2	17	285	3	276	3.42e-134	381
MS.gene019314.t1	AT2G39010	68.364	275	80	2	17	285	3	276	2.72e-133	379
MS.gene019314.t1	AT2G16850	72.374	257	70	1	29	285	13	268	5.59e-133	378
MS.gene019314.t1	AT2G37180	71.538	260	67	3	27	280	12	270	1.11e-132	377
MS.gene019314.t1	AT5G60660	70.455	264	71	2	28	285	15	277	2.11e-132	377
MS.gene019314.t1	AT4G00430	83.019	212	35	1	3	214	4	214	2.85e-126	358
MS.gene019314.t1	AT2G39010	64.500	200	64	2	17	210	3	201	7.96e-85	254
MS.gene019314.t1	AT5G47450	37.872	235	131	6	43	274	10	232	4.66e-31	116
MS.gene019314.t1	AT1G73190	36.066	244	127	8	52	282	24	251	5.34e-31	117
MS.gene019314.t1	AT4G01470	34.711	242	139	6	41	277	10	237	1.22e-30	115
MS.gene019314.t1	AT3G16240	36.364	231	132	5	47	274	14	232	1.63e-30	115
MS.gene019314.t1	AT1G17810	36.170	235	130	5	52	278	24	246	5.23e-30	114
MS.gene019314.t1	AT2G36830	34.286	245	134	9	41	276	10	236	5.52e-28	108
MS.gene019314.t1	AT3G26520	33.188	229	138	5	52	277	22	238	1.29e-27	107
MS.gene019314.t1	AT4G17340	36.596	235	134	6	43	274	10	232	5.03e-27	106
MS.gene019314.t1	AT3G47440	32.759	232	136	6	52	278	23	239	4.33e-25	101
MS.gene019314.t1	AT2G25810	34.335	233	136	8	52	282	19	236	9.15e-25	100
MS.gene019314.t1	AT4G19030	29.643	280	171	9	3	277	13	271	1.41e-19	87.0
MS.gene019314.t1	AT1G31885	32.000	225	140	7	45	267	36	249	5.51e-19	85.5
MS.gene019314.t1	AT4G18910	28.512	242	162	6	38	277	36	268	6.64e-17	79.3
MS.gene019314.t1	AT5G37820	28.111	217	130	7	55	266	46	241	8.97e-17	79.0
MS.gene019314.t1	AT5G37820	28.111	217	130	7	55	266	82	277	1.40e-16	79.0
MS.gene019314.t1	AT2G34390	26.119	268	168	9	16	277	20	263	6.01e-16	76.6
MS.gene019314.t1	AT1G31885	31.892	185	116	5	85	267	19	195	9.14e-16	75.9
MS.gene019314.t1	AT2G34390	27.511	229	144	8	55	277	9	221	4.19e-14	70.9
MS.gene019314.t1	AT3G06100	29.707	239	140	8	52	286	46	260	1.25e-13	69.7
MS.gene019314.t1	AT3G06100	29.661	236	138	8	55	286	1	212	3.27e-13	68.2
MS.gene019314.t1	AT4G10380	26.316	266	160	9	20	267	29	276	5.73e-13	68.2
MS.gene019314.t1	AT1G80760	29.004	231	143	8	49	277	77	288	9.48e-13	67.8
MS.gene019314.t1	AT5G37810	23.789	227	149	6	55	277	46	252	2.04e-12	66.6

Find 71 sgRNAs with CRISPR-Local

Find 116 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
CAAGGAATTGCTTGGGCTTT+TGG	0.161774	5.4:-4554775	MS.gene019314:CDS
TATTGCACTGCTGGAATTTC+AGG	0.165208	5.4:-4554730	MS.gene019314:intron
TTGGCTACAATTCCCATTAC+TGG	0.294571	5.4:-4553846	MS.gene019314:CDS
TTCTGGGTTGGACCTTTCAT+TGG	0.308099	5.4:-4553643	MS.gene019314:CDS
GCCCTTGTCTATTGCACTGC+TGG	0.332113	5.4:-4554739	MS.gene019314:CDS
ACCAACAGAGGCACACTTAG+AGG	0.335616	5.4:+4554801	None:intergenic
GGAGAGGGAGGAAGATGTTA+AGG	0.347098	5.4:-4555034	MS.gene019314:CDS
GATCCGAGCAATTCCTTTCA+AGG	0.393867	5.4:-4553587	MS.gene019314:CDS
TTGGTATTCAAGGAATTGCT+TGG	0.400234	5.4:-4554783	MS.gene019314:CDS
GCTCGTTATGAGTTGTATAA+AGG	0.401946	5.4:-4554205	MS.gene019314:CDS
TGTGCCTCTGTTGGTATTCA+AGG	0.404573	5.4:-4554793	MS.gene019314:CDS
ACAATTCCCATTACTGGAAC+TGG	0.407279	5.4:-4553840	MS.gene019314:CDS
GAATTGCTCGGATCACTATC+TGG	0.408932	5.4:+4553596	None:intergenic
ATGGTCTCTGTTGTATATTA+TGG	0.412666	5.4:+4553788	None:intergenic
AGAGTCTCTTGCATTTCTCT+TGG	0.418783	5.4:+4554078	None:intergenic
AGGGAGGAAGATGTTAAGGT+TGG	0.422571	5.4:-4555030	MS.gene019314:CDS
TGCAAGAGACTCTCACGTTC+CGG	0.436085	5.4:-4554068	MS.gene019314:intron
TGGTATTCAAGGAATTGCTT+GGG	0.437803	5.4:-4554782	MS.gene019314:CDS
TACACCAAGGGTGATGGTCT+TGG	0.441240	5.4:-4554157	MS.gene019314:CDS
CTTGGAGCTATCTGTGGTGC+TGG	0.453990	5.4:-4554253	MS.gene019314:CDS
TTCTCAGAAAAGAATGCATT+GGG	0.454430	5.4:-4554997	MS.gene019314:CDS
AATTATTCCCTTGCCTTGAA+AGG	0.458161	5.4:+4553574	None:intergenic
CCAGCACCTTTGTTTGAGCC+AGG	0.466057	5.4:-4554931	MS.gene019314:CDS
CCCTCTAAGTGTGCCTCTGT+TGG	0.469372	5.4:-4554802	MS.gene019314:CDS
TTAATGCCAGTTCCAGTAAT+GGG	0.469401	5.4:+4553834	None:intergenic
ATAAATCCAGCGGTGACATT+CGG	0.475431	5.4:-4554337	MS.gene019314:CDS
TACATAATAATGCAGTGTCT+TGG	0.479630	5.4:-4554271	MS.gene019314:CDS
GACCATGACTTCAACTCTCC+TGG	0.486464	5.4:+4554913	None:intergenic
AACTCTCCTGGCTCAAACAA+AGG	0.498554	5.4:+4554925	None:intergenic
CATCACTGTCTTAACTGTGA+TGG	0.500492	5.4:-4554839	MS.gene019314:CDS
GTTCTCAGAAAAGAATGCAT+TGG	0.502108	5.4:-4554998	MS.gene019314:CDS
GGTCTTGGAGCTGAGATTGT+TGG	0.502760	5.4:-4554142	MS.gene019314:CDS
CCTGGCTCAAACAAAGGTGC+TGG	0.505994	5.4:+4554931	None:intergenic
TGCATTTCTCTTGGCATCAG+TGG	0.515764	5.4:+4554087	None:intergenic
TAACTGTGATGGGTGTGAAT+AGG	0.515829	5.4:-4554828	MS.gene019314:CDS
GAAAAGAATGCATTGGGCAC+AGG	0.516964	5.4:-4554991	MS.gene019314:CDS
AGCAATTCCTTTCAAGGCAA+GGG	0.517229	5.4:-4553581	MS.gene019314:CDS
ATTAACCCAGCTAGGAGTCT+TGG	0.521008	5.4:-4553816	MS.gene019314:CDS
TATACAACAGAGACCATGCT+TGG	0.521813	5.4:-4553782	MS.gene019314:CDS
AGCTCCAAGACCATCACCCT+TGG	0.522666	5.4:+4554153	None:intergenic
GAGTGATAGCAAGGACTACA+AGG	0.528511	5.4:-4554962	MS.gene019314:CDS
GCAGCACCAAGACTCCTAGC+TGG	0.528907	5.4:+4553810	None:intergenic
CCATCACCCTTGGTGTAACC+AGG	0.529590	5.4:+4554163	None:intergenic
CAGTTAAGACAGTGATGTAA+AGG	0.533154	5.4:+4554845	None:intergenic
TTGCCTTGAAAGGAATTGCT+CGG	0.539077	5.4:+4553584	None:intergenic
AACAAACCGAATGTCACCGC+TGG	0.543714	5.4:+4554331	None:intergenic
ATCACTGTCTTAACTGTGAT+GGG	0.546772	5.4:-4554838	MS.gene019314:CDS
GCAAGTGCAGCTCCAATGAA+AGG	0.549715	5.4:+4553631	None:intergenic
GGAGCAAATGTTGTGAATCC+TGG	0.560797	5.4:-4554181	MS.gene019314:CDS
AGGAGCTCAGAGTGATAGCA+AGG	0.561366	5.4:-4554971	MS.gene019314:CDS
GGCTCAAACAAAGGTGCTGG+TGG	0.561806	5.4:+4554934	None:intergenic
GTTAATGCCAGTTCCAGTAA+TGG	0.566105	5.4:+4553833	None:intergenic
CCTGGTTACACCAAGGGTGA+TGG	0.571890	5.4:-4554163	MS.gene019314:CDS
GAGCAATTCCTTTCAAGGCA+AGG	0.579031	5.4:-4553582	MS.gene019314:CDS
CGTTATGAGTTGTATAAAGG+TGG	0.591045	5.4:-4554202	MS.gene019314:CDS
CAGTGTCTTGGAGCTATCTG+TGG	0.593126	5.4:-4554259	MS.gene019314:CDS
ACAGCAAACCCAATTGGAAG+AGG	0.593192	5.4:+4553882	None:intergenic
CAGCACCAAGACTCCTAGCT+GGG	0.594486	5.4:+4553811	None:intergenic
GTAGAATACTGCTCTTGTCA+AGG	0.594791	5.4:+4554291	None:intergenic
ATACAACAGAGACCATGCTT+GGG	0.595986	5.4:-4553781	MS.gene019314:CDS
AGCCAGGAGAGTTGAAGTCA+TGG	0.598254	5.4:-4554915	MS.gene019314:CDS
CCAACAGAGGCACACTTAGA+GGG	0.603003	5.4:+4554802	None:intergenic
TTCCAGCAGTGCAATAGACA+AGG	0.608111	5.4:+4554737	None:intergenic
TGTGGTGCTGGTGTAGTGAA+AGG	0.611215	5.4:-4554241	MS.gene019314:CDS
ATACATGGTCATCCCAAGCA+TGG	0.639779	5.4:+4553769	None:intergenic
GAACTGGCATTAACCCAGCT+AGG	0.641090	5.4:-4553824	MS.gene019314:CDS
TCCAGCAGTGCAATAGACAA+GGG	0.662213	5.4:+4554738	None:intergenic
GTGAATCCTGGTTACACCAA+GGG	0.663817	5.4:-4554169	MS.gene019314:CDS
AATTCCTTGAATACCAACAG+AGG	0.711099	5.4:+4554789	None:intergenic
AGGTGGGCACATAAATCCAG+CGG	0.718916	5.4:-4554347	MS.gene019314:CDS
TGTGAATCCTGGTTACACCA+AGG	0.762851	5.4:-4554170	MS.gene019314:CDS

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!	AGATTAATATATAAGATGTG+AGG	-	chr5.4:4554155-4554174	MS.gene019314:CDS	20.0%
!!	CAGAACAAAAAATAAATTGA+AGG	+	chr5.4:4554897-4554916	None:intergenic	20.0%
!!	GATTAATATATAAGATGTGA+GGG	-	chr5.4:4554156-4554175	MS.gene019314:CDS	20.0%
!!!	ATGTTTGTATTTGTAGATTT+TGG	-	chr5.4:4554705-4554724	MS.gene019314:intron	20.0%
!	TCTCATGATTCATAAAATTG+TGG	+	chr5.4:4553944-4553963	None:intergenic	25.0%
!!!	AAATTAAACAGTGGATTTTC+TGG	-	chr5.4:4554952-4554971	MS.gene019314:CDS	25.0%
!!!	AATTAAACAGTGGATTTTCT+GGG	-	chr5.4:4554953-4554972	MS.gene019314:CDS	25.0%
!!!	TGATATATGCTTCATTTTTG+TGG	-	chr5.4:4554666-4554685	MS.gene019314:intron	25.0%
!!!	TGTTTAATGTTTGAGTTTTG+TGG	-	chr5.4:4554928-4554947	MS.gene019314:CDS	25.0%
	ATGGTCTCTGTTGTATATTA+TGG	+	chr5.4:4554827-4554846	None:intergenic	30.0%
	GACAAGTCTTTAATCTGAAA+TGG	-	chr5.4:4554068-4554087	MS.gene019314:intron	30.0%
	TACATAATAATGCAGTGTCT+TGG	-	chr5.4:4554341-4554360	MS.gene019314:CDS	30.0%
	TGAAATTCATTTACACGTAC+CGG	+	chr5.4:4554566-4554585	None:intergenic	30.0%
	TTCTCAGAAAAGAATGCATT+GGG	-	chr5.4:4553615-4553634	MS.gene019314:CDS	30.0%
	TTTCAGATTAAAGACTTGTC+CGG	+	chr5.4:4554068-4554087	None:intergenic	30.0%
	TTTGAACAAAACTAACGAGA+TGG	-	chr5.4:4554234-4554253	MS.gene019314:CDS	30.0%
!	AAGTCTTTAATCTGAAATGG+TGG	-	chr5.4:4554071-4554090	MS.gene019314:CDS	30.0%
!	TTTAATCTGAAATGGTGGTT+TGG	-	chr5.4:4554076-4554095	MS.gene019314:CDS	30.0%
!	TTTTGTGGCAAATTAAACAG+TGG	-	chr5.4:4554943-4554962	MS.gene019314:CDS	30.0%
	AAAAACACAGCAAACCCAAT+TGG	+	chr5.4:4554739-4554758	None:intergenic	35.0%
	AACAAAACTAACGAGATGGT+TGG	-	chr5.4:4554238-4554257	MS.gene019314:CDS	35.0%
	AAGATGTGAGGGACTAAATT+AGG	-	chr5.4:4554167-4554186	MS.gene019314:CDS	35.0%
	AATTCCTTGAATACCAACAG+AGG	+	chr5.4:4553826-4553845	None:intergenic	35.0%
	ACAAAACTAACGAGATGGTT+GGG	-	chr5.4:4554239-4554258	MS.gene019314:CDS	35.0%
	AGATGTGAGGGACTAAATTA+GGG	-	chr5.4:4554168-4554187	MS.gene019314:CDS	35.0%
	ATCACTGTCTTAACTGTGAT+GGG	-	chr5.4:4553774-4553793	MS.gene019314:CDS	35.0%
	CAGTTAAGACAGTGATGTAA+AGG	+	chr5.4:4553770-4553789	None:intergenic	35.0%
	CGTTATGAGTTGTATAAAGG+TGG	-	chr5.4:4554410-4554429	MS.gene019314:intron	35.0%
	GCTCGTTATGAGTTGTATAA+AGG	-	chr5.4:4554407-4554426	MS.gene019314:intron	35.0%
	GTCAGTATTAGTGTCGTATT+GGG	+	chr5.4:4553973-4553992	None:intergenic	35.0%
	GTTCTCAGAAAAGAATGCAT+TGG	-	chr5.4:4553614-4553633	MS.gene019314:CDS	35.0%
	TCAATCTGTCACATAAACAC+CGG	-	chr5.4:4554046-4554065	MS.gene019314:intron	35.0%
	TGGTATTCAAGGAATTGCTT+GGG	-	chr5.4:4553830-4553849	MS.gene019314:CDS	35.0%
	TGTCAGTATTAGTGTCGTAT+TGG	+	chr5.4:4553974-4553993	None:intergenic	35.0%
	TTAATGCCAGTTCCAGTAAT+GGG	+	chr5.4:4554781-4554800	None:intergenic	35.0%
	TTGGTATTCAAGGAATTGCT+TGG	-	chr5.4:4553829-4553848	MS.gene019314:CDS	35.0%
!!	CATGGTCATTTTATAGAGCT+GGG	-	chr5.4:4553715-4553734	MS.gene019314:intron	35.0%
!!	TCATGGTCATTTTATAGAGC+TGG	-	chr5.4:4553714-4553733	MS.gene019314:intron	35.0%
!!	TGCTTCATTTTTGTGGACTA+AGG	-	chr5.4:4554673-4554692	MS.gene019314:intron	35.0%
!!!	AATTGGGTTTGCTGTGTTTT+TGG	-	chr5.4:4554738-4554757	MS.gene019314:CDS	35.0%
	ACAAAGTGGAAGGACATACA+TGG	+	chr5.4:4554861-4554880	None:intergenic	40.0%
	ACAATTCCCATTACTGGAAC+TGG	-	chr5.4:4554772-4554791	MS.gene019314:CDS	40.0%
	AGAGTCTCTTGCATTTCTCT+TGG	+	chr5.4:4554537-4554556	None:intergenic	40.0%
	AGCAATTCCTTTCAAGGCAA+GGG	-	chr5.4:4555031-4555050	MS.gene019314:CDS	40.0%
	ATAAATCCAGCGGTGACATT+CGG	-	chr5.4:4554275-4554294	MS.gene019314:CDS	40.0%
	ATACAACAGAGACCATGCTT+GGG	-	chr5.4:4554831-4554850	MS.gene019314:CDS	40.0%
	CAACAGCATAACAAAGTGGA+AGG	+	chr5.4:4554871-4554890	None:intergenic	40.0%
	CATCACTGTCTTAACTGTGA+TGG	-	chr5.4:4553773-4553792	MS.gene019314:CDS	40.0%
	GCATCACCATCTTGAAATTG+TGG	+	chr5.4:4554197-4554216	None:intergenic	40.0%
	GTAGAATACTGCTCTTGTCA+AGG	+	chr5.4:4554324-4554343	None:intergenic	40.0%
	GTTAATGCCAGTTCCAGTAA+TGG	+	chr5.4:4554782-4554801	None:intergenic	40.0%
	TATACAACAGAGACCATGCT+TGG	-	chr5.4:4554830-4554849	MS.gene019314:CDS	40.0%
	TATTGCACTGCTGGAATTTC+AGG	-	chr5.4:4553882-4553901	MS.gene019314:CDS	40.0%
	TTGCCTTGAAAGGAATTGCT+CGG	+	chr5.4:4555031-4555050	None:intergenic	40.0%
	TTGGCTACAATTCCCATTAC+TGG	-	chr5.4:4554766-4554785	MS.gene019314:CDS	40.0%
!	TCCACTTTGTTATGCTGTTG+TGG	-	chr5.4:4554871-4554890	MS.gene019314:CDS	40.0%
!	TGGTGTAGTGAAAGGTTTTG+AGG	-	chr5.4:4554379-4554398	MS.gene019314:intron	40.0%
!	TTTTGGCACCTCTTCCAATT+GGG	-	chr5.4:4554722-4554741	MS.gene019314:intron	40.0%
!!	AAACAGTGGATTTTCTGGGT+TGG	-	chr5.4:4554957-4554976	MS.gene019314:CDS	40.0%
!!	ATTTTGGCACCTCTTCCAAT+TGG	-	chr5.4:4554721-4554740	MS.gene019314:intron	40.0%
!!	GGTGACATTCGGTTTGTTTT+TGG	-	chr5.4:4554286-4554305	MS.gene019314:CDS	40.0%
!!	GGTGTAGTGAAAGGTTTTGA+GGG	-	chr5.4:4554380-4554399	MS.gene019314:intron	40.0%
!!	TAACTGTGATGGGTGTGAAT+AGG	-	chr5.4:4553784-4553803	MS.gene019314:CDS	40.0%
!!!	CATTCGGTTTGTTTTTGGCT+AGG	-	chr5.4:4554291-4554310	MS.gene019314:CDS	40.0%
!!!	TGCTGTGTTTTTGGTTCACT+TGG	-	chr5.4:4554747-4554766	MS.gene019314:CDS	40.0%
	AACTCTCCTGGCTCAAACAA+AGG	+	chr5.4:4553690-4553709	None:intergenic	45.0%
	ACAGCAAACCCAATTGGAAG+AGG	+	chr5.4:4554733-4554752	None:intergenic	45.0%
	AGGGAGGAAGATGTTAAGGT+TGG	-	chr5.4:4553582-4553601	MS.gene019314:CDS	45.0%
	ATACATGGTCATCCCAAGCA+TGG	+	chr5.4:4554846-4554865	None:intergenic	45.0%
	ATTAACCCAGCTAGGAGTCT+TGG	-	chr5.4:4554796-4554815	MS.gene019314:CDS	45.0%
	GAAAAGAATGCATTGGGCAC+AGG	-	chr5.4:4553621-4553640	MS.gene019314:CDS	45.0%
	GAATTGCTCGGATCACTATC+TGG	+	chr5.4:4555019-4555038	None:intergenic	45.0%
	GAGCAATTCCTTTCAAGGCA+AGG	-	chr5.4:4555030-4555049	MS.gene019314:CDS	45.0%
	GAGTGATAGCAAGGACTACA+AGG	-	chr5.4:4553650-4553669	MS.gene019314:CDS	45.0%
	GATCCGAGCAATTCCTTTCA+AGG	-	chr5.4:4555025-4555044	MS.gene019314:CDS	45.0%
	GCCACAACAGCATAACAAAG+TGG	+	chr5.4:4554875-4554894	None:intergenic	45.0%
	GGAGCAAATGTTGTGAATCC+TGG	-	chr5.4:4554431-4554450	MS.gene019314:intron	45.0%
	GGGACTCCACAATTTCAAGA+TGG	-	chr5.4:4554188-4554207	MS.gene019314:CDS	45.0%
	GTGAATCCTGGTTACACCAA+GGG	-	chr5.4:4554443-4554462	MS.gene019314:intron	45.0%
	TCCAGCAGTGCAATAGACAA+GGG	+	chr5.4:4553877-4553896	None:intergenic	45.0%
	TGCATTTCTCTTGGCATCAG+TGG	+	chr5.4:4554528-4554547	None:intergenic	45.0%
	TGTGAATCCTGGTTACACCA+AGG	-	chr5.4:4554442-4554461	MS.gene019314:intron	45.0%
	TGTGCCTCTGTTGGTATTCA+AGG	-	chr5.4:4553819-4553838	MS.gene019314:CDS	45.0%
	TTCCAGCAGTGCAATAGACA+AGG	+	chr5.4:4553878-4553897	None:intergenic	45.0%
!	CAAGGAATTGCTTGGGCTTT+TGG	-	chr5.4:4553837-4553856	MS.gene019314:CDS	45.0%
!	TTCTGGGTTGGACCTTTCAT+TGG	-	chr5.4:4554969-4554988	MS.gene019314:CDS	45.0%
	AACAAACCGAATGTCACCGC+TGG	+	chr5.4:4554284-4554303	None:intergenic	50.0%
	AGCCAGGAGAGTTGAAGTCA+TGG	-	chr5.4:4553697-4553716	MS.gene019314:intron	50.0%
	AGGAGCTCAGAGTGATAGCA+AGG	-	chr5.4:4553641-4553660	MS.gene019314:CDS	50.0%
	AGGTGGGCACATAAATCCAG+CGG	-	chr5.4:4554265-4554284	MS.gene019314:CDS	50.0%
	CAGTGTCTTGGAGCTATCTG+TGG	-	chr5.4:4554353-4554372	MS.gene019314:intron	50.0%
	CTAACGAGATGGTTGGGAAC+AGG	-	chr5.4:4554245-4554264	MS.gene019314:CDS	50.0%
	GAACTGGCATTAACCCAGCT+AGG	-	chr5.4:4554788-4554807	MS.gene019314:CDS	50.0%
	GACCATGACTTCAACTCTCC+TGG	+	chr5.4:4553702-4553721	None:intergenic	50.0%
	GCAAGTGCAGCTCCAATGAA+AGG	+	chr5.4:4554984-4555003	None:intergenic	50.0%
	GGAGAGGGAGGAAGATGTTA+AGG	-	chr5.4:4553578-4553597	MS.gene019314:CDS	50.0%
	GGTCTTGGAGCTGAGATTGT+TGG	-	chr5.4:4554470-4554489	MS.gene019314:intron	50.0%
	TGCAAGAGACTCTCACGTTC+CGG	-	chr5.4:4554544-4554563	MS.gene019314:intron	50.0%
!	ACCAACAGAGGCACACTTAG+AGG	+	chr5.4:4553814-4553833	None:intergenic	50.0%
!	CCAACAGAGGCACACTTAGA+GGG	+	chr5.4:4553813-4553832	None:intergenic	50.0%
!	GGAATTGCTTGGGCTTTTGG+TGG	-	chr5.4:4553840-4553859	MS.gene019314:CDS	50.0%
!	TACACCAAGGGTGATGGTCT+TGG	-	chr5.4:4554455-4554474	MS.gene019314:intron	50.0%
!!	TGTGGTGCTGGTGTAGTGAA+AGG	-	chr5.4:4554371-4554390	MS.gene019314:intron	50.0%
	ACGAGATGGTTGGGAACAGG+TGG	-	chr5.4:4554248-4554267	MS.gene019314:CDS	55.0%
	AGCTCCAAGACCATCACCCT+TGG	+	chr5.4:4554462-4554481	None:intergenic	55.0%
	CAGCACCAAGACTCCTAGCT+GGG	+	chr5.4:4554804-4554823	None:intergenic	55.0%
	CCCTCTAAGTGTGCCTCTGT+TGG	-	chr5.4:4553810-4553829	MS.gene019314:CDS	55.0%
	CCTGGTTACACCAAGGGTGA+TGG	-	chr5.4:4554449-4554468	MS.gene019314:intron	55.0%
	CGAGATGGTTGGGAACAGGT+GGG	-	chr5.4:4554249-4554268	MS.gene019314:CDS	55.0%
	CTTGGAGCTATCTGTGGTGC+TGG	-	chr5.4:4554359-4554378	MS.gene019314:intron	55.0%
	GCCCTTGTCTATTGCACTGC+TGG	-	chr5.4:4553873-4553892	MS.gene019314:CDS	55.0%
!	CCAGCACCTTTGTTTGAGCC+AGG	-	chr5.4:4553681-4553700	MS.gene019314:intron	55.0%
!	CCATCACCCTTGGTGTAACC+AGG	+	chr5.4:4554452-4554471	None:intergenic	55.0%
!	CCTGGCTCAAACAAAGGTGC+TGG	+	chr5.4:4553684-4553703	None:intergenic	55.0%
!!	GGCTCAAACAAAGGTGCTGG+TGG	+	chr5.4:4553681-4553700	None:intergenic	55.0%
	GCAGCACCAAGACTCCTAGC+TGG	+	chr5.4:4554805-4554824	None:intergenic	60.0%

Chromosome	Type	Strat	End	Strand	Name
chr5.4	gene	4553576	4555058	4553576	ID=MS.gene019314
chr5.4	mRNA	4553576	4555058	4553576	ID=MS.gene019314.t1;Parent=MS.gene019314
chr5.4	exon	4554731	4555058	4554731	ID=MS.gene019314.t1.exon1;Parent=MS.gene019314.t1
chr5.4	CDS	4554731	4555058	4554731	ID=cds.MS.gene019314.t1;Parent=MS.gene019314.t1
chr5.4	exon	4554069	4554367	4554069	ID=MS.gene019314.t1.exon2;Parent=MS.gene019314.t1
chr5.4	CDS	4554069	4554367	4554069	ID=cds.MS.gene019314.t1;Parent=MS.gene019314.t1
chr5.4	exon	4553773	4553913	4553773	ID=MS.gene019314.t1.exon3;Parent=MS.gene019314.t1
chr5.4	CDS	4553773	4553913	4553773	ID=cds.MS.gene019314.t1;Parent=MS.gene019314.t1
chr5.4	exon	4553576	4553671	4553576	ID=MS.gene019314.t1.exon4;Parent=MS.gene019314.t1
chr5.4	CDS	4553576	4553671	4553576	ID=cds.MS.gene019314.t1;Parent=MS.gene019314.t1

Gene Sequence

>MS.gene019314

ATGGAGAGGGAGGAAGATGTTAAGGTTGGAGCAAACAAGTTCTCAGAAAAGAATGCATTGGGCACAGGAGCTCAGAGTGATAGCAAGGACTACAAGGAAGCACCACCAGCACCTTTGTTTGAGCCAGGAGAGTTGAAGTCATGGTCATTTTATAGAGCTGGGATTGCTGAGTTTGTTGCAACTTTCTTGTTCCTTTACATCACTGTCTTAACTGTGATGGGTGTGAATAGGTCACCCTCTAAGTGTGCCTCTGTTGGTATTCAAGGAATTGCTTGGGCTTTTGGTGGTATGATCTTTGCCCTTGTCTATTGCACTGCTGGAATTTCAGGTAACTTCATTTTCTTTTCTTTACTTTTTTACTTGCTCCACAATTTTATGAATCATGAGACTTACACCCAATACGACACTAATACTGACACGTCGACATCAATAATAATATGAAAATGAGTAATTTAATGTAATCGCATGTTTCAATCTGTCACATAAACACCGGACAAGTCTTTAATCTGAAATGGTGGTTTGGTATGTAGATTCATCGTAAAATATTATAAATAGTATATGATATTTTGTAAATTTAAGAGATTAATATATAAGATGTGAGGGACTAAATTAGGGACTCCACAATTTCAAGATGGTGATGCACTATAAATTATTTTGCTTTGAACAAAACTAACGAGATGGTTGGGAACAGGTGGGCACATAAATCCAGCGGTGACATTCGGTTTGTTTTTGGCTAGGAAGCTGTCCTTGACAAGAGCAGTATTCTACATAATAATGCAGTGTCTTGGAGCTATCTGTGGTGCTGGTGTAGTGAAAGGTTTTGAGGGTAATGCTCGTTATGAGTTGTATAAAGGTGGAGCAAATGTTGTGAATCCTGGTTACACCAAGGGTGATGGTCTTGGAGCTGAGATTGTTGGTACTTTTGTTCTTGTCTACACTGTCTTCTCTGCCACTGATGCCAAGAGAAATGCAAGAGACTCTCACGTTCCGGTACGTGTAAATGAATTTCAACTAATAAAAATAGTGTCGTAAGATGAATATTTGTTTATAATGAAAAGTGTGTTAAAGAGTTGTATTTCTAGCATCTCTATGATATATGCTTCATTTTTGTGGACTAAGGAGTAATGTGATGTTTGTATTTGTAGATTTTGGCACCTCTTCCAATTGGGTTTGCTGTGTTTTTGGTTCACTTGGCTACAATTCCCATTACTGGAACTGGCATTAACCCAGCTAGGAGTCTTGGTGCTGCCATAATATACAACAGAGACCATGCTTGGGATGACCATGTATGTCCTTCCACTTTGTTATGCTGTTGTGGCCTTCAATTTATTTTTTGTTCTGCTTAAGTGACTTGTTTAATGTTTGAGTTTTGTGGCAAATTAAACAGTGGATTTTCTGGGTTGGACCTTTCATTGGAGCTGCACTTGCTGCATTATATCACCAGATAGTGATCCGAGCAATTCCTTTCAAGGCAAGGGAATAA

Protein sequence

>MS.gene019314.t1

MEREEDVKVGANKFSEKNALGTGAQSDSKDYKEAPPAPLFEPGELKSWSFYRAGIAEFVATFLFLYITVLTVMGVNRSPSKCASVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAVFYIIMQCLGAICGAGVVKGFEGNARYELYKGGANVVNPGYTKGDGLGAEIVGTFVLVYTVFSATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNRDHAWDDHWIFWVGPFIGAALAALYHQIVIRAIPFKARE