AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene048817

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene048817.t1 MTR_8g098375 99.303 287 2 0 1 287 1 287 0.0 581
MS.gene048817.t1 MTR_5g010150 92.657 286 21 0 1 286 1 286 0.0 550
MS.gene048817.t1 MTR_5g082070 86.364 286 37 1 3 286 4 289 0.0 510
MS.gene048817.t1 MTR_3g070210 87.719 285 33 1 3 285 4 288 0.0 510
MS.gene048817.t1 MTR_4g415300 82.986 288 45 2 2 286 3 289 3.41e-179 495
MS.gene048817.t1 MTR_3g070210 87.259 259 31 1 3 259 4 262 3.18e-164 457
MS.gene048817.t1 MTR_8g098375 92.140 229 16 1 1 227 1 229 1.44e-153 428
MS.gene048817.t1 MTR_5g010150 91.905 210 17 0 1 210 1 210 2.83e-144 404
MS.gene048817.t1 MTR_7g101190 71.218 271 68 3 16 280 6 272 5.25e-140 396
MS.gene048817.t1 MTR_3g118010 70.455 264 77 1 21 284 6 268 4.68e-135 383
MS.gene048817.t1 MTR_2g094270 64.261 291 84 3 1 284 1 278 6.20e-135 383
MS.gene048817.t1 MTR_4g059390 66.917 266 81 2 25 284 12 276 5.37e-131 373
MS.gene048817.t1 MTR_3g070210 86.190 210 27 1 3 210 4 213 9.62e-130 367
MS.gene048817.t1 MTR_4g415300 80.189 212 38 2 2 210 3 213 6.57e-124 353
MS.gene048817.t1 MTR_2g094270 64.259 263 74 3 1 256 1 250 3.95e-119 342
MS.gene048817.t1 MTR_1g095070 77.838 185 40 1 96 280 23 206 1.04e-102 299
MS.gene048817.t1 MTR_1g095070 77.640 161 35 1 96 256 23 182 5.59e-87 258
MS.gene048817.t1 MTR_4g059390 64.583 192 61 2 25 210 12 202 1.20e-86 258
MS.gene048817.t1 MTR_1g077540 36.638 232 128 7 52 278 21 238 5.98e-33 122
MS.gene048817.t1 MTR_2g101370 35.897 234 135 5 47 277 15 236 3.16e-32 119
MS.gene048817.t1 MTR_6g069040 38.723 235 128 7 52 282 21 243 1.03e-31 118
MS.gene048817.t1 MTR_4g063090 34.034 238 142 5 41 275 10 235 5.50e-30 114
MS.gene048817.t1 MTR_8g013680 35.470 234 134 6 46 274 11 232 9.23e-30 113
MS.gene048817.t1 MTR_1g115405 34.426 244 140 7 41 278 10 239 6.06e-29 111
MS.gene048817.t1 MTR_7g103030 33.333 243 138 7 42 277 11 236 4.89e-28 108
MS.gene048817.t1 MTR_7g023350 33.884 242 144 6 41 278 10 239 9.76e-28 107
MS.gene048817.t1 MTR_5g012810 36.726 226 127 7 52 274 19 231 9.34e-27 105
MS.gene048817.t1 MTR_1g006490 33.333 231 127 7 52 275 19 229 2.90e-26 103
MS.gene048817.t1 MTR_1g006590 33.906 233 123 8 52 275 19 229 2.07e-25 101
MS.gene048817.t1 MTR_2g060360 31.646 237 132 8 52 278 19 235 5.71e-20 87.0
MS.gene048817.t1 MTR_5g063930 30.263 228 144 6 47 274 32 244 1.39e-19 86.3
MS.gene048817.t1 MTR_8g087710 28.014 282 174 9 11 287 2 259 1.49e-19 86.3
MS.gene048817.t1 MTR_4g084880 26.549 226 146 5 55 277 38 246 8.61e-18 81.6
MS.gene048817.t1 MTR_5g079570 28.646 192 124 4 84 275 68 246 1.84e-17 80.5
MS.gene048817.t1 MTR_2g017660 27.391 230 145 6 41 267 28 238 3.95e-17 79.7
MS.gene048817.t1 MTR_2g017590 31.944 216 125 6 55 267 39 235 5.26e-17 79.3
MS.gene048817.t1 MTR_8g087720 27.917 240 156 6 49 287 35 258 1.04e-16 78.6
MS.gene048817.t1 MTR_4g006730 28.205 234 140 8 34 267 68 273 2.37e-16 77.8
MS.gene048817.t1 MTR_4g075570 27.692 195 119 7 99 279 95 281 3.19e-16 77.8
MS.gene048817.t1 MTR_2g104940 30.986 213 128 7 56 267 84 278 4.15e-16 77.4
MS.gene048817.t1 MTR_7g010650 28.390 236 149 7 50 284 35 251 5.79e-16 76.3
MS.gene048817.t1 MTR_3g008920 29.688 192 122 4 84 275 54 232 5.90e-16 76.3
MS.gene048817.t1 MTR_2g017610 29.577 213 134 5 55 267 41 237 7.25e-16 76.3
MS.gene048817.t1 MTR_2g017620 30.736 231 141 8 50 279 36 248 1.25e-15 75.5
MS.gene048817.t1 MTR_2g017620 30.736 231 141 8 50 279 22 234 1.28e-15 75.1
MS.gene048817.t1 MTR_4g075590 28.125 192 122 5 99 279 81 267 1.40e-15 75.9
MS.gene048817.t1 MTR_2g017570 29.577 213 134 5 55 267 41 237 1.53e-15 75.1
MS.gene048817.t1 MTR_1g097840 29.204 226 140 8 56 279 78 285 3.04e-13 68.9
MS.gene048817.t1 MTR_4g006630 28.492 179 114 4 89 267 22 186 4.70e-13 67.4
MS.gene048817.t1 MTR_4g006730 28.492 179 114 4 89 267 22 186 4.99e-13 67.4
MS.gene048817.t1 MTR_1g070385 25.778 225 148 6 49 272 59 265 3.50e-12 67.0
MS.gene048817.t1 MTR_2g017620 30.769 182 106 5 101 279 3 167 4.59e-12 63.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene048817.t1 AT4G00430 85.263 285 41 1 3 287 4 287 0.0 504
MS.gene048817.t1 AT2G45960 86.316 285 37 2 3 287 4 286 0.0 502
MS.gene048817.t1 AT4G23400 87.719 285 34 1 3 287 4 287 9.38e-175 484
MS.gene048817.t1 AT1G01620 87.018 285 35 2 3 287 4 286 5.82e-173 479
MS.gene048817.t1 AT3G61430 85.965 285 38 2 3 287 4 286 2.01e-171 476
MS.gene048817.t1 AT3G61430 85.965 285 38 2 3 287 4 286 2.01e-171 476
MS.gene048817.t1 AT2G45960 86.614 254 32 2 3 256 4 255 6.17e-161 448
MS.gene048817.t1 AT2G45960 86.614 254 32 2 3 256 4 255 1.64e-159 446
MS.gene048817.t1 AT2G37170 71.538 260 67 3 27 280 55 313 3.72e-134 383
MS.gene048817.t1 AT4G35100 71.875 256 71 1 29 284 15 269 5.06e-134 380
MS.gene048817.t1 AT4G35100 71.875 256 71 1 29 284 15 269 5.06e-134 380
MS.gene048817.t1 AT1G01620 86.512 215 28 1 73 287 1 214 5.56e-134 378
MS.gene048817.t1 AT2G37170 71.538 260 67 3 27 280 12 270 9.03e-134 380
MS.gene048817.t1 AT3G53420 71.154 260 68 2 27 280 14 272 1.06e-133 380
MS.gene048817.t1 AT3G53420 71.154 260 68 2 27 280 14 272 1.06e-133 380
MS.gene048817.t1 AT2G37180 71.538 260 67 3 27 280 12 270 1.14e-133 380
MS.gene048817.t1 AT2G16850 71.875 256 71 1 29 284 13 267 5.18e-133 378
MS.gene048817.t1 AT5G60660 70.342 263 71 2 28 284 15 276 1.49e-132 377
MS.gene048817.t1 AT3G54820 67.778 270 80 2 17 280 3 271 4.08e-132 376
MS.gene048817.t1 AT2G39010 65.950 279 82 3 12 284 4 275 6.06e-131 373
MS.gene048817.t1 AT4G00430 82.547 212 36 1 3 214 4 214 2.86e-127 361
MS.gene048817.t1 AT2G39010 63.000 200 67 2 17 210 3 201 2.53e-84 252
MS.gene048817.t1 AT4G01470 35.146 239 140 5 42 277 11 237 2.51e-32 120
MS.gene048817.t1 AT1G73190 35.656 244 128 8 52 282 24 251 1.70e-31 118
MS.gene048817.t1 AT1G17810 36.596 235 129 5 52 278 24 246 2.51e-31 117
MS.gene048817.t1 AT5G47450 37.021 235 133 7 43 274 10 232 1.91e-30 115
MS.gene048817.t1 AT3G16240 35.931 231 133 6 47 274 14 232 6.86e-30 113
MS.gene048817.t1 AT3G26520 33.624 229 137 5 52 277 22 238 8.61e-29 110
MS.gene048817.t1 AT2G36830 33.469 245 136 8 41 276 10 236 4.72e-28 108
MS.gene048817.t1 AT4G17340 36.170 235 135 7 43 274 10 232 3.08e-27 106
MS.gene048817.t1 AT2G25810 33.478 230 135 8 52 278 19 233 3.10e-24 98.6
MS.gene048817.t1 AT3G47440 31.687 243 135 8 47 278 18 240 4.29e-24 98.6
MS.gene048817.t1 AT4G19030 26.712 292 185 8 3 287 13 282 3.84e-19 85.9
MS.gene048817.t1 AT1G31885 31.111 225 142 7 45 267 36 249 3.96e-18 83.2
MS.gene048817.t1 AT5G37820 28.571 217 129 7 55 266 46 241 2.55e-17 80.5
MS.gene048817.t1 AT5G37820 28.571 217 129 7 55 266 82 277 2.85e-17 80.9
MS.gene048817.t1 AT4G18910 27.027 259 165 8 38 287 36 279 1.52e-15 75.5
MS.gene048817.t1 AT2G34390 26.336 262 162 9 22 277 27 263 1.98e-15 75.1
MS.gene048817.t1 AT1G31885 31.351 185 117 5 85 267 19 195 5.42e-15 73.6
MS.gene048817.t1 AT3G06100 29.707 239 140 8 52 286 46 260 1.64e-14 72.4
MS.gene048817.t1 AT3G06100 29.661 236 138 8 55 286 1 212 4.13e-14 70.5
MS.gene048817.t1 AT2G34390 27.074 229 145 8 55 277 9 221 1.20e-13 69.7
MS.gene048817.t1 AT4G10380 26.022 269 166 8 21 273 32 283 2.18e-13 69.7
MS.gene048817.t1 AT5G37810 26.923 234 154 7 55 287 46 263 3.02e-13 68.9

Find 81 sgRNAs with CRISPR-Local

Find 111 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAAGGTATTGCTTGGTCTTT+TGG 0.121056 4.3:-5901088 MS.gene048817:CDS
CATTGGGTTTGCTGTGTTCT+TGG 0.191867 4.3:-5900313 MS.gene048817:CDS
TTCTGGGTTGGACCATTTAT+TGG 0.216605 4.3:-5900080 MS.gene048817:CDS
GATGTTTGCAGTGGATATTC+TGG 0.249033 4.3:-5900097 MS.gene048817:intron
GAGCTGCCATCATCTTTAAC+AGG 0.292037 4.3:-5900233 MS.gene048817:CDS
GCTAGGTATGAACTGTTTAA+AGG 0.293383 4.3:-5900791 MS.gene048817:CDS
TACTGCACTGCTGGAATATC+AGG 0.304159 4.3:-5901043 MS.gene048817:intron
GCAAGAGCAGCTCCAATAAA+TGG 0.304880 4.3:+5900068 None:intergenic
GCCCTTGTCTACTGCACTGC+TGG 0.345974 4.3:-5901052 MS.gene048817:CDS
TGTTCCTCTGTTGGCATTCA+AGG 0.347490 4.3:-5901106 MS.gene048817:CDS
TGCTGTGTTCTTGGTCCACT+TGG 0.359026 4.3:-5900304 MS.gene048817:CDS
CTTTGGGCTGCTGTCCCTAA+TGG 0.359259 4.3:+5901295 None:intergenic
GTAGTCTTTGCTGTCACTTT+GGG 0.366503 4.3:+5901279 None:intergenic
TTAATGCCTGTTCCTGTGAT+TGG 0.393415 4.3:+5900273 None:intergenic
ATAAACCCTGCTGTGACATT+TGG 0.394638 4.3:-5900923 MS.gene048817:CDS
TCTTTAACAGGGACTTTGCT+TGG 0.396893 4.3:-5900221 MS.gene048817:CDS
GACACCCATGACAGTCAAAA+TGG 0.399657 4.3:+5901147 None:intergenic
TCTTGGCTCCTCTTCCCATT+GGG 0.400657 4.3:-5900329 MS.gene048817:CDS
TTCTCAGAGAGGCAGCCATT+AGG 0.401275 4.3:-5901310 MS.gene048817:CDS
CTTGGTGCTATTTGTGGTGC+TGG 0.401687 4.3:-5900839 MS.gene048817:CDS
CAATGTCTTGGTGCTATTTG+TGG 0.402335 4.3:-5900845 MS.gene048817:CDS
AATGCCAACAGAGGAACATT+TGG 0.407248 4.3:+5901111 None:intergenic
TCTCAGAGAGGCAGCCATTA+GGG 0.408528 4.3:-5901309 MS.gene048817:CDS
AAGGAGGAAGATGTGAAAGT+TGG 0.409979 4.3:-5901343 MS.gene048817:CDS
ATCTTGGCTCCTCTTCCCAT+TGG 0.412469 4.3:-5900330 MS.gene048817:CDS
TGTAGTCTTTGCTGTCACTT+TGG 0.414094 4.3:+5901278 None:intergenic
CTTTAACAGGGACTTTGCTT+GGG 0.419659 4.3:-5900220 MS.gene048817:CDS
ATGTTTGCAGTGGATATTCT+GGG 0.431070 4.3:-5900096 MS.gene048817:intron
ACCATTCCAATCACAGGAAC+AGG 0.439708 4.3:-5900279 MS.gene048817:CDS
GAATGGCTCGGATGACAATC+TGG 0.440088 4.3:+5900033 None:intergenic
TTGTGGTGCTGGTGTGGTGA+AGG 0.443603 4.3:-5900828 MS.gene048817:CDS
TTGGCATTCAAGGTATTGCT+TGG 0.445934 4.3:-5901096 MS.gene048817:CDS
AGCTCACCAGGCTCAAAGAA+TGG 0.462526 4.3:+5901238 None:intergenic
GACCATGACTTGAGCTCACC+AGG 0.467963 4.3:+5901226 None:intergenic
CCATCACCTTTAGTGTATCC+AGG 0.469714 4.3:+5900749 None:intergenic
CCAGCTCCATTCTTTGAGCC+TGG 0.470395 4.3:-5901244 MS.gene048817:CDS
TGTGGTGCTGGTGTGGTGAA+GGG 0.479619 4.3:-5900827 MS.gene048817:CDS
GTGAATCCTGGATACACTAA+AGG 0.482977 4.3:-5900755 MS.gene048817:CDS
AGAGTCTCTAGCATTTCTCT+TGG 0.499778 4.3:+5900664 None:intergenic
AAAGTCCCTGTTAAAGATGA+TGG 0.503711 4.3:+5900227 None:intergenic
AGAGAGAGTAAGAATGGAGA+AGG 0.505737 4.3:-5901362 None:intergenic
AACAGACCAAATGTCACAGC+AGG 0.509644 4.3:+5900917 None:intergenic
ACCTCCAAATGTTCCTCTGT+TGG 0.509764 4.3:-5901115 MS.gene048817:CDS
TCAAAGAATGGAGCTGGTGG+TGG 0.512975 4.3:+5901250 None:intergenic
GAGAGTAAGAATGGAGAAGG+AGG 0.517379 4.3:-5901359 None:intergenic
GCAGCTCCAAGACTCCTAGC+TGG 0.521224 4.3:+5900249 None:intergenic
GCCAACAGAGGAACATTTGG+AGG 0.524215 4.3:+5901114 None:intergenic
TGCTATTTGTGGTGCTGGTG+TGG 0.526494 4.3:-5900834 MS.gene048817:CDS
ATTAACCCAGCTAGGAGTCT+TGG 0.528660 4.3:-5900255 MS.gene048817:CDS
CCAGGCTCAAAGAATGGAGC+TGG 0.531940 4.3:+5901244 None:intergenic
TTCCAGCAGTGCAGTAGACA+AGG 0.538007 4.3:+5901050 None:intergenic
GGACTTGGAGCTGAGATTGT+TGG 0.540230 4.3:-5900728 MS.gene048817:CDS
AAGAACACAGCAAACCCAAT+GGG 0.541932 4.3:+5900315 None:intergenic
CCTCAGGTCCTTGTCTTGAA+AGG 0.542853 4.3:+5900011 None:intergenic
ACAGCAAACCCAATGGGAAG+AGG 0.548821 4.3:+5900321 None:intergenic
TACACTAAAGGTGATGGACT+TGG 0.556791 4.3:-5900743 MS.gene048817:CDS
AGCCTGGTGAGCTCAAGTCA+TGG 0.565531 4.3:-5901228 MS.gene048817:CDS
CCTGGATACACTAAAGGTGA+TGG 0.566370 4.3:-5900749 MS.gene048817:CDS
CAAGAACACAGCAAACCCAA+TGG 0.568082 4.3:+5900314 None:intergenic
CAGTCAAAATGGTGATGTAG+AGG 0.569489 4.3:+5901158 None:intergenic
TACATTGTGATGCAATGTCT+TGG 0.571531 4.3:-5900857 MS.gene048817:CDS
TTGTCTTGAAAGGAATGGCT+CGG 0.574695 4.3:+5900021 None:intergenic
GGTCCTTGTCTTGAAAGGAA+TGG 0.577153 4.3:+5900016 None:intergenic
TTGCAGTGGATATTCTGGGT+TGG 0.579644 4.3:-5900092 MS.gene048817:intron
CAGCTCCAAGACTCCTAGCT+GGG 0.583912 4.3:+5900250 None:intergenic
GGCTCAAAGAATGGAGCTGG+TGG 0.601469 4.3:+5901247 None:intergenic
TTGGCTACCATTCCAATCAC+AGG 0.604120 4.3:-5900285 MS.gene048817:CDS
GATGTAGAGGAACAAGAAAG+TGG 0.623469 4.3:+5901171 None:intergenic
AGCTGCCATCATCTTTAACA+GGG 0.632590 4.3:-5900232 MS.gene048817:CDS
CCTTTCAAGACAAGGACCTG+AGG 0.635312 4.3:-5900011 None:intergenic
GCCTGTTCCTGTGATTGGAA+TGG 0.635477 4.3:+5900278 None:intergenic
GATGACAATCTGGTGATACA+CGG 0.637739 4.3:+5900043 None:intergenic
GAACAGGCATTAACCCAGCT+AGG 0.644423 4.3:-5900263 MS.gene048817:CDS
TCCAGCAGTGCAGTAGACAA+GGG 0.651759 4.3:+5901051 None:intergenic
GAGCCATTCCTTTCAAGACA+AGG 0.654804 4.3:-5900019 MS.gene048817:CDS
AACAGTGTAGACAAGAACAA+AGG 0.671173 4.3:+5900703 None:intergenic
AATACCTTGAATGCCAACAG+AGG 0.688113 4.3:+5901102 None:intergenic
ACAGACCAAATGTCACAGCA+GGG 0.700234 4.3:+5900918 None:intergenic
GAGCAAACAAATTCTCAGAG+AGG 0.712701 4.3:-5901321 MS.gene048817:CDS
AGGTATGAACTGTTTAAAGG+TGG 0.726401 4.3:-5900788 MS.gene048817:CDS
TGATTGGAATGGTAGCCAAG+TGG 0.737998 4.3:+5900289 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAGAAATCAAAAAATAAAAA+AGG + chr4.3:5900747-5900766 None:intergenic 10.0%
!!! AAATTTTGTTCATAAAAATA+AGG + chr4.3:5901191-5901210 None:intergenic 10.0%
!!! ACTTATAATTTATTTTCTTA+AGG + chr4.3:5900800-5900819 None:intergenic 10.0%
!! ATCAAAAAATAAAAAAGGAA+AGG + chr4.3:5900742-5900761 None:intergenic 15.0%
!!! CTATATATTTTAGTTATTTG+TGG - chr4.3:5900864-5900883 MS.gene048817:CDS 15.0%
!! AATCAATGAACCTAAAATAT+TGG - chr4.3:5900907-5900926 MS.gene048817:CDS 20.0%
!! GCATATATACTAGTATTATA+TGG - chr4.3:5900943-5900962 MS.gene048817:intron 20.0%
!! TAAACTTAAATAGTCCTAAT+TGG + chr4.3:5900842-5900861 None:intergenic 20.0%
!!! AAATAGATCACCAATATTTT+AGG + chr4.3:5900920-5900939 None:intergenic 20.0%
!!! CTAATTTTTTTCTTCCAATT+AGG - chr4.3:5900825-5900844 MS.gene048817:CDS 20.0%
! AACCACATTGAAATTATAGT+TGG + chr4.3:5900990-5901009 None:intergenic 25.0%
!!! AATGTGGTTATTCTTTTTTG+GGG - chr4.3:5901001-5901020 MS.gene048817:intron 25.0%
!!! CAATGTGGTTATTCTTTTTT+GGG - chr4.3:5901000-5901019 MS.gene048817:intron 25.0%
!!! TCAATGTGGTTATTCTTTTT+TGG - chr4.3:5900999-5901018 MS.gene048817:intron 25.0%
AAGGTGATAGAAAACATACA+TGG + chr4.3:5901172-5901191 None:intergenic 30.0%
CACAGATCTATCATTTATCT+TGG + chr4.3:5900396-5900415 None:intergenic 30.0%
GACCAACTATAATTTCAATG+TGG - chr4.3:5900985-5901004 MS.gene048817:intron 30.0%
!! ATTATTGATGATGTTTGCAG+TGG - chr4.3:5901256-5901275 MS.gene048817:CDS 30.0%
!! TTTTGGGGAATTATAGATCT+TGG - chr4.3:5901016-5901035 MS.gene048817:intron 30.0%
AAAAGGAAAGGAAGACATAC+AGG + chr4.3:5900730-5900749 None:intergenic 35.0%
AAAGTCCCTGTTAAAGATGA+TGG + chr4.3:5901138-5901157 None:intergenic 35.0%
AACAGTGTAGACAAGAACAA+AGG + chr4.3:5900662-5900681 None:intergenic 35.0%
AGGTATGAACTGTTTAAAGG+TGG - chr4.3:5900574-5900593 MS.gene048817:intron 35.0%
ATGTTTGCAGTGGATATTCT+GGG - chr4.3:5901266-5901285 MS.gene048817:CDS 35.0%
GCTAGGTATGAACTGTTTAA+AGG - chr4.3:5900571-5900590 MS.gene048817:intron 35.0%
TACATTGTGATGCAATGTCT+TGG - chr4.3:5900505-5900524 MS.gene048817:intron 35.0%
! TGTGACATTTGGTCTGTTTT+TGG - chr4.3:5900450-5900469 MS.gene048817:intron 35.0%
!! ATCTGTGTGTTGTTTGTGAT+AGG - chr4.3:5900409-5900428 MS.gene048817:intron 35.0%
!!! AAGGTATTGCTTGGTCTTTT+GGG - chr4.3:5900275-5900294 MS.gene048817:CDS 35.0%
!!! ATCACCATTTTGACTGTCAT+GGG - chr4.3:5900211-5900230 MS.gene048817:intron 35.0%
AAGAACACAGCAAACCCAAT+GGG + chr4.3:5901050-5901069 None:intergenic 40.0%
AAGGAGGAAGATGTGAAAGT+TGG - chr4.3:5900019-5900038 MS.gene048817:CDS 40.0%
AATACCTTGAATGCCAACAG+AGG + chr4.3:5900263-5900282 None:intergenic 40.0%
AATGCCAACAGAGGAACATT+TGG + chr4.3:5900254-5900273 None:intergenic 40.0%
AGAGTCTCTAGCATTTCTCT+TGG + chr4.3:5900701-5900720 None:intergenic 40.0%
AGCTGCCATCATCTTTAACA+GGG - chr4.3:5901130-5901149 MS.gene048817:CDS 40.0%
ATAAACCCTGCTGTGACATT+TGG - chr4.3:5900439-5900458 MS.gene048817:intron 40.0%
CTTTAACAGGGACTTTGCTT+GGG - chr4.3:5901142-5901161 MS.gene048817:CDS 40.0%
GAGCAAACAAATTCTCAGAG+AGG - chr4.3:5900041-5900060 MS.gene048817:CDS 40.0%
GATGACAATCTGGTGATACA+CGG + chr4.3:5901322-5901341 None:intergenic 40.0%
GATGTAGAGGAACAAGAAAG+TGG + chr4.3:5900194-5900213 None:intergenic 40.0%
GATGTTTGCAGTGGATATTC+TGG - chr4.3:5901265-5901284 MS.gene048817:CDS 40.0%
GTGAATCCTGGATACACTAA+AGG - chr4.3:5900607-5900626 MS.gene048817:intron 40.0%
TCTTTAACAGGGACTTTGCT+TGG - chr4.3:5901141-5901160 MS.gene048817:CDS 40.0%
TTAATGCCTGTTCCTGTGAT+TGG + chr4.3:5901092-5901111 None:intergenic 40.0%
TTGTCTTGAAAGGAATGGCT+CGG + chr4.3:5901344-5901363 None:intergenic 40.0%
! CAGTCAAAATGGTGATGTAG+AGG + chr4.3:5900207-5900226 None:intergenic 40.0%
! GGTGCTAATTTTGTGAATCC+TGG - chr4.3:5900595-5900614 MS.gene048817:intron 40.0%
! TCATGGTCTTTTTACAGAGC+TGG - chr4.3:5900151-5900170 MS.gene048817:intron 40.0%
! TGTAGTCTTTGCTGTCACTT+TGG + chr4.3:5900087-5900106 None:intergenic 40.0%
! TTCTGGGTTGGACCATTTAT+TGG - chr4.3:5901282-5901301 MS.gene048817:CDS 40.0%
!! AGGTATTGCTTGGTCTTTTG+GGG - chr4.3:5900276-5900295 MS.gene048817:CDS 40.0%
!! CAATGTCTTGGTGCTATTTG+TGG - chr4.3:5900517-5900536 MS.gene048817:intron 40.0%
!! GTAGTCTTTGCTGTCACTTT+GGG + chr4.3:5900086-5900105 None:intergenic 40.0%
!! TACACTAAAGGTGATGGACT+TGG - chr4.3:5900619-5900638 MS.gene048817:intron 40.0%
!! TGTGTGTTGTTTGTGATAGG+TGG - chr4.3:5900412-5900431 MS.gene048817:intron 40.0%
!! TTGGCATTCAAGGTATTGCT+TGG - chr4.3:5900266-5900285 MS.gene048817:CDS 40.0%
!!! AGGGTTTTGAAGGTAATGCT+AGG - chr4.3:5900554-5900573 MS.gene048817:intron 40.0%
!!! CAAGGTATTGCTTGGTCTTT+TGG - chr4.3:5900274-5900293 MS.gene048817:CDS 40.0%
!!! CATCACCATTTTGACTGTCA+TGG - chr4.3:5900210-5900229 MS.gene048817:intron 40.0%
!!! CATTTGGTCTGTTTTTGGCA+AGG - chr4.3:5900455-5900474 MS.gene048817:intron 40.0%
AACAGACCAAATGTCACAGC+AGG + chr4.3:5900448-5900467 None:intergenic 45.0%
ACAGACCAAATGTCACAGCA+GGG + chr4.3:5900447-5900466 None:intergenic 45.0%
ACCATTCCAATCACAGGAAC+AGG - chr4.3:5901083-5901102 MS.gene048817:CDS 45.0%
ACCTCCAAATGTTCCTCTGT+TGG - chr4.3:5900247-5900266 MS.gene048817:CDS 45.0%
ATTAACCCAGCTAGGAGTCT+TGG - chr4.3:5901107-5901126 MS.gene048817:CDS 45.0%
CAAGAACACAGCAAACCCAA+TGG + chr4.3:5901051-5901070 None:intergenic 45.0%
CCATCACCTTTAGTGTATCC+AGG + chr4.3:5900616-5900635 None:intergenic 45.0%
CCTGGATACACTAAAGGTGA+TGG - chr4.3:5900613-5900632 MS.gene048817:intron 45.0%
GACACCCATGACAGTCAAAA+TGG + chr4.3:5900218-5900237 None:intergenic 45.0%
GAGCCATTCCTTTCAAGACA+AGG - chr4.3:5901343-5901362 MS.gene048817:CDS 45.0%
GAGCTGCCATCATCTTTAAC+AGG - chr4.3:5901129-5901148 MS.gene048817:CDS 45.0%
GCAAGAGCAGCTCCAATAAA+TGG + chr4.3:5901297-5901316 None:intergenic 45.0%
GGTCCTTGTCTTGAAAGGAA+TGG + chr4.3:5901349-5901368 None:intergenic 45.0%
TACTGCACTGCTGGAATATC+AGG - chr4.3:5900319-5900338 MS.gene048817:CDS 45.0%
TGATTGGAATGGTAGCCAAG+TGG + chr4.3:5901076-5901095 None:intergenic 45.0%
TGTTCCTCTGTTGGCATTCA+AGG - chr4.3:5900256-5900275 MS.gene048817:CDS 45.0%
TTGCAGTGGATATTCTGGGT+TGG - chr4.3:5901270-5901289 MS.gene048817:CDS 45.0%
TTGGCTACCATTCCAATCAC+AGG - chr4.3:5901077-5901096 MS.gene048817:CDS 45.0%
!! CATTGGGTTTGCTGTGTTCT+TGG - chr4.3:5901049-5901068 MS.gene048817:CDS 45.0%
!! GGTATTGCTTGGTCTTTTGG+GGG - chr4.3:5900277-5900296 MS.gene048817:CDS 45.0%
!! AATAAATAAATAATATTGTA+AGG + chr4.3:5900351-5900370 None:intergenic 5.0%
ACAGCAAACCCAATGGGAAG+AGG + chr4.3:5901044-5901063 None:intergenic 50.0%
AGCTCACCAGGCTCAAAGAA+TGG + chr4.3:5900127-5900146 None:intergenic 50.0%
ATCTTGGCTCCTCTTCCCAT+TGG - chr4.3:5901032-5901051 MS.gene048817:intron 50.0%
GAACAGGCATTAACCCAGCT+AGG - chr4.3:5901099-5901118 MS.gene048817:CDS 50.0%
GCCAACAGAGGAACATTTGG+AGG + chr4.3:5900251-5900270 None:intergenic 50.0%
GCCTGTTCCTGTGATTGGAA+TGG + chr4.3:5901087-5901106 None:intergenic 50.0%
GGACTTGGAGCTGAGATTGT+TGG - chr4.3:5900634-5900653 MS.gene048817:intron 50.0%
TCAAAGAATGGAGCTGGTGG+TGG + chr4.3:5900115-5900134 None:intergenic 50.0%
TCCAGCAGTGCAGTAGACAA+GGG + chr4.3:5900314-5900333 None:intergenic 50.0%
TCTCAGAGAGGCAGCCATTA+GGG - chr4.3:5900053-5900072 MS.gene048817:CDS 50.0%
TCTTGGCTCCTCTTCCCATT+GGG - chr4.3:5901033-5901052 MS.gene048817:intron 50.0%
TGCTGTGTTCTTGGTCCACT+TGG - chr4.3:5901058-5901077 MS.gene048817:CDS 50.0%
TTCCAGCAGTGCAGTAGACA+AGG + chr4.3:5900315-5900334 None:intergenic 50.0%
TTCTCAGAGAGGCAGCCATT+AGG - chr4.3:5900052-5900071 MS.gene048817:CDS 50.0%
! GAATGGCTCGGATGACAATC+TGG + chr4.3:5901332-5901351 None:intergenic 50.0%
!! CTTGGTGCTATTTGTGGTGC+TGG - chr4.3:5900523-5900542 MS.gene048817:intron 50.0%
!! GGTGTGGTGAAGGGTTTTGA+AGG - chr4.3:5900544-5900563 MS.gene048817:intron 50.0%
!! TGCTATTTGTGGTGCTGGTG+TGG - chr4.3:5900528-5900547 MS.gene048817:intron 50.0%
AGCCTGGTGAGCTCAAGTCA+TGG - chr4.3:5900134-5900153 MS.gene048817:intron 55.0%
CAGCTCCAAGACTCCTAGCT+GGG + chr4.3:5901115-5901134 None:intergenic 55.0%
CCAGCTCCATTCTTTGAGCC+TGG - chr4.3:5900118-5900137 MS.gene048817:intron 55.0%
CCAGGCTCAAAGAATGGAGC+TGG + chr4.3:5900121-5900140 None:intergenic 55.0%
CTTTGGGCTGCTGTCCCTAA+TGG + chr4.3:5900070-5900089 None:intergenic 55.0%
GACCATGACTTGAGCTCACC+AGG + chr4.3:5900139-5900158 None:intergenic 55.0%
GGCTCAAAGAATGGAGCTGG+TGG + chr4.3:5900118-5900137 None:intergenic 55.0%
!! TGTGGTGCTGGTGTGGTGAA+GGG - chr4.3:5900535-5900554 MS.gene048817:intron 55.0%
!! TTGTGGTGCTGGTGTGGTGA+AGG - chr4.3:5900534-5900553 MS.gene048817:intron 55.0%
GCAGCTCCAAGACTCCTAGC+TGG + chr4.3:5901116-5901135 None:intergenic 60.0%
GCCCTTGTCTACTGCACTGC+TGG - chr4.3:5900310-5900329 MS.gene048817:CDS 60.0%


Chromosome Type Strat End Strand Name
chr4.3 gene 5900013 5901371 5900013 ID=MS.gene048817
chr4.3 mRNA 5900013 5901371 5900013 ID=MS.gene048817.t1;Parent=MS.gene048817
chr4.3 exon 5901044 5901371 5901044 ID=MS.gene048817.t1.exon1;Parent=MS.gene048817.t1
chr4.3 CDS 5901044 5901371 5901044 ID=cds.MS.gene048817.t1;Parent=MS.gene048817.t1
chr4.3 exon 5900655 5900953 5900655 ID=MS.gene048817.t1.exon2;Parent=MS.gene048817.t1
chr4.3 CDS 5900655 5900953 5900655 ID=cds.MS.gene048817.t1;Parent=MS.gene048817.t1
chr4.3 exon 5900212 5900352 5900212 ID=MS.gene048817.t1.exon3;Parent=MS.gene048817.t1
chr4.3 CDS 5900212 5900352 5900212 ID=cds.MS.gene048817.t1;Parent=MS.gene048817.t1
chr4.3 exon 5900013 5900108 5900013 ID=MS.gene048817.t1.exon4;Parent=MS.gene048817.t1
chr4.3 CDS 5900013 5900108 5900013 ID=cds.MS.gene048817.t1;Parent=MS.gene048817.t1
Gene Sequence

>MS.gene048817

ATGGAGAAGGAGGAAGATGTGAAAGTTGGAGCAAACAAATTCTCAGAGAGGCAGCCATTAGGGACAGCAGCCCAAAGTGACAGCAAAGACTACAAAGAGCCACCACCAGCTCCATTCTTTGAGCCTGGTGAGCTCAAGTCATGGTCTTTTTACAGAGCTGGAATTGCTGAGTTCATAGCCACTTTCTTGTTCCTCTACATCACCATTTTGACTGTCATGGGTGTCAACAGATCAACCTCCAAATGTTCCTCTGTTGGCATTCAAGGTATTGCTTGGTCTTTTGGGGGTATGATCTTTGCCCTTGTCTACTGCACTGCTGGAATATCAGGTTAAAACCTTACAATATTATTTATTTATTTTTTTCTTGAGAATGTTAATAGCCAAGATAAATGATAGATCTGTGTGTTGTTTGTGATAGGTGGACACATAAACCCTGCTGTGACATTTGGTCTGTTTTTGGCAAGGAAGCTGTCACTTACAAGAGCTATATTCTACATTGTGATGCAATGTCTTGGTGCTATTTGTGGTGCTGGTGTGGTGAAGGGTTTTGAAGGTAATGCTAGGTATGAACTGTTTAAAGGTGGTGCTAATTTTGTGAATCCTGGATACACTAAAGGTGATGGACTTGGAGCTGAGATTGTTGGTACCTTTGTTCTTGTCTACACTGTTTTCTCTGCTACTGATGCCAAGAGAAATGCTAGAGACTCTCATGTTCCTGTATGTCTTCCTTTCCTTTTTTATTTTTTGATTTCTTCATTCAATTTGCATGTGTGCTGAAATTTTTCCTTAAGAAAATAAATTATAAGTTTACTCTAATTTTTTTCTTCCAATTAGGACTATTTAAGTTTAGTCTATATATTTTAGTTATTTGTGGTGATAAATATGTAGTTATTTAATCAATGAACCTAAAATATTGGTGATCTATTTTCTGCATATATACTAGTATTATATGGTTTTAATTTCTCAATGCTTGACCAACTATAATTTCAATGTGGTTATTCTTTTTTGGGGAATTATAGATCTTGGCTCCTCTTCCCATTGGGTTTGCTGTGTTCTTGGTCCACTTGGCTACCATTCCAATCACAGGAACAGGCATTAACCCAGCTAGGAGTCTTGGAGCTGCCATCATCTTTAACAGGGACTTTGCTTGGGATGACCATGTATGTTTTCTATCACCTTATTTTTATGAACAAAATTTAGACTCTAATATTTGTCTTTAGATTAAATAATTAATTAATACTGTATTATTGATGATGTTTGCAGTGGATATTCTGGGTTGGACCATTTATTGGAGCTGCTCTTGCTGCCGTGTATCACCAGATTGTCATCCGAGCCATTCCTTTCAAGACAAGGACCTGA
Protein sequence

>MS.gene048817.t1

MEKEEDVKVGANKFSERQPLGTAAQSDSKDYKEPPPAPFFEPGELKSWSFYRAGIAEFIATFLFLYITILTVMGVNRSTSKCSSVGIQGIAWSFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAIFYIVMQCLGAICGAGVVKGFEGNARYELFKGGANFVNPGYTKGDGLGAEIVGTFVLVYTVFSATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIFNRDFAWDDHWIFWVGPFIGAALAAVYHQIVIRAIPFKTRT