AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene54792

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene54792.t1 MTR_4g059390 83.803 284 46 0 1 284 1 284 1.49e-177 491
MS.gene54792.t1 MTR_7g101190 81.185 287 54 0 1 287 1 287 8.94e-173 479
MS.gene54792.t1 MTR_2g094270 77.972 286 61 2 1 284 1 286 1.12e-166 463
MS.gene54792.t1 MTR_3g118010 79.705 271 49 1 16 286 14 278 8.98e-155 433
MS.gene54792.t1 MTR_1g095070 100.000 199 0 0 89 287 23 221 1.24e-143 402
MS.gene54792.t1 MTR_2g094270 77.600 250 54 2 1 248 1 250 2.91e-142 401
MS.gene54792.t1 MTR_4g415300 72.374 257 65 1 16 272 33 283 1.88e-136 387
MS.gene54792.t1 MTR_8g098375 71.923 260 66 2 14 272 27 280 1.19e-135 385
MS.gene54792.t1 MTR_5g082070 71.910 267 68 3 7 272 23 283 3.52e-135 384
MS.gene54792.t1 MTR_5g010150 70.943 265 70 2 14 277 27 285 1.41e-134 382
MS.gene54792.t1 MTR_3g070210 69.373 271 76 2 3 272 19 283 3.80e-134 381
MS.gene54792.t1 MTR_4g059390 82.673 202 35 0 1 202 1 202 7.92e-122 347
MS.gene54792.t1 MTR_3g070210 68.400 250 72 2 3 251 19 262 4.90e-119 342
MS.gene54792.t1 MTR_1g095070 100.000 160 0 0 89 248 23 182 1.21e-113 325
MS.gene54792.t1 MTR_8g098375 64.904 208 64 3 15 219 28 229 3.40e-89 265
MS.gene54792.t1 MTR_4g415300 68.984 187 52 1 16 202 33 213 1.01e-87 261
MS.gene54792.t1 MTR_3g070210 65.672 201 62 2 3 202 19 213 4.07e-87 259
MS.gene54792.t1 MTR_5g010150 68.783 189 52 2 15 202 28 210 3.78e-86 257
MS.gene54792.t1 MTR_2g101370 37.553 237 124 6 39 270 20 237 4.46e-35 127
MS.gene54792.t1 MTR_1g077540 36.402 239 124 7 39 270 21 238 6.51e-35 127
MS.gene54792.t1 MTR_1g115405 38.525 244 134 7 30 272 12 240 2.21e-33 122
MS.gene54792.t1 MTR_8g013680 37.083 240 113 6 39 266 19 232 1.47e-32 120
MS.gene54792.t1 MTR_7g103030 34.711 242 141 5 30 270 12 237 7.68e-32 119
MS.gene54792.t1 MTR_4g063090 37.344 241 126 7 44 278 26 247 1.75e-31 117
MS.gene54792.t1 MTR_1g006490 35.600 250 129 9 30 271 10 235 4.96e-31 116
MS.gene54792.t1 MTR_6g069040 37.179 234 129 6 39 270 21 238 1.30e-30 115
MS.gene54792.t1 MTR_5g012810 37.118 229 127 5 39 266 19 231 6.05e-30 113
MS.gene54792.t1 MTR_1g006590 34.263 251 130 9 30 271 10 234 1.11e-29 113
MS.gene54792.t1 MTR_7g023350 37.339 233 130 6 39 270 21 238 4.81e-29 111
MS.gene54792.t1 MTR_8g087710 27.536 276 165 7 1 269 1 248 4.28e-20 87.8
MS.gene54792.t1 MTR_2g017660 29.487 234 138 6 39 269 39 248 4.83e-20 87.8
MS.gene54792.t1 MTR_5g079570 29.694 229 143 5 41 269 38 248 1.88e-18 83.2
MS.gene54792.t1 MTR_2g060360 31.890 254 131 9 30 270 11 235 2.45e-18 82.8
MS.gene54792.t1 MTR_5g063930 29.897 194 123 4 78 269 65 247 2.77e-18 82.8
MS.gene54792.t1 MTR_3g008920 30.846 201 119 5 76 272 53 237 3.26e-18 82.4
MS.gene54792.t1 MTR_4g084880 27.234 235 144 5 39 269 35 246 1.06e-17 81.3
MS.gene54792.t1 MTR_2g017620 27.660 235 145 6 37 269 22 233 9.01e-17 78.6
MS.gene54792.t1 MTR_2g017620 27.660 235 145 6 37 269 36 247 1.06e-16 78.6
MS.gene54792.t1 MTR_4g075570 31.694 183 109 8 92 261 95 274 2.16e-16 78.2
MS.gene54792.t1 MTR_8g087720 25.969 258 160 6 15 269 18 247 3.03e-16 77.0
MS.gene54792.t1 MTR_2g017590 27.542 236 144 6 37 269 34 245 5.14e-16 76.6
MS.gene54792.t1 MTR_4g075590 25.000 272 177 8 4 261 2 260 2.18e-15 75.5
MS.gene54792.t1 MTR_2g017610 30.208 192 114 5 82 269 72 247 9.03e-15 73.2
MS.gene54792.t1 MTR_2g017570 28.796 191 118 4 82 269 72 247 1.72e-14 72.4
MS.gene54792.t1 MTR_2g104940 28.111 217 134 6 43 259 84 278 3.82e-14 71.6
MS.gene54792.t1 MTR_2g017620 28.889 180 112 4 92 269 1 166 7.78e-14 68.9
MS.gene54792.t1 MTR_7g010650 26.693 251 154 6 37 283 35 259 1.25e-13 69.7
MS.gene54792.t1 MTR_4g006730 25.185 270 161 8 21 282 68 304 2.42e-13 69.3
MS.gene54792.t1 MTR_1g070385 25.105 239 147 6 36 269 59 270 7.57e-12 65.9
MS.gene54792.t1 MTR_4g006730 26.540 211 134 5 80 282 20 217 4.29e-11 61.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene54792.t1 AT2G37170 83.275 287 46 1 1 287 44 328 1.69e-178 495
MS.gene54792.t1 AT2G37170 83.275 287 46 1 1 287 1 285 8.83e-178 491
MS.gene54792.t1 AT3G53420 82.230 287 51 0 1 287 1 287 6.98e-176 487
MS.gene54792.t1 AT3G53420 82.230 287 51 0 1 287 1 287 6.98e-176 487
MS.gene54792.t1 AT2G37180 82.230 287 49 1 1 287 1 285 8.44e-175 484
MS.gene54792.t1 AT3G54820 82.230 287 50 1 1 287 1 286 5.00e-174 482
MS.gene54792.t1 AT2G39010 78.521 284 60 1 1 284 1 283 1.64e-167 466
MS.gene54792.t1 AT5G60660 79.859 283 57 0 1 283 1 283 2.20e-167 466
MS.gene54792.t1 AT2G16850 79.715 281 50 2 6 286 4 277 2.04e-159 445
MS.gene54792.t1 AT4G35100 77.305 282 57 2 6 286 4 279 9.77e-156 436
MS.gene54792.t1 AT4G35100 77.305 282 57 2 6 286 4 279 9.77e-156 436
MS.gene54792.t1 AT4G00430 74.131 259 61 1 14 272 28 280 4.77e-140 396
MS.gene54792.t1 AT2G45960 72.587 259 65 1 14 272 27 279 2.25e-136 387
MS.gene54792.t1 AT4G23400 74.517 259 60 1 14 272 28 280 1.59e-131 375
MS.gene54792.t1 AT1G01620 73.745 259 62 1 14 272 27 279 2.89e-131 374
MS.gene54792.t1 AT3G61430 72.587 259 65 1 14 272 27 279 6.72e-129 368
MS.gene54792.t1 AT3G61430 72.587 259 65 1 14 272 27 279 6.72e-129 368
MS.gene54792.t1 AT2G45960 72.766 235 58 1 14 248 27 255 1.05e-121 349
MS.gene54792.t1 AT2G45960 72.766 235 58 1 14 248 27 255 9.82e-121 348
MS.gene54792.t1 AT1G01620 77.073 205 47 0 68 272 3 207 1.24e-113 327
MS.gene54792.t1 AT2G39010 76.733 202 46 1 1 202 1 201 3.34e-112 323
MS.gene54792.t1 AT4G00430 70.466 193 51 1 14 206 28 214 7.88e-92 271
MS.gene54792.t1 AT3G26520 38.618 246 127 8 30 270 13 239 3.37e-35 127
MS.gene54792.t1 AT3G16240 39.574 235 114 7 39 266 19 232 2.81e-33 122
MS.gene54792.t1 AT1G73190 36.842 247 137 7 29 270 14 246 5.89e-33 122
MS.gene54792.t1 AT2G36830 37.860 243 127 9 30 267 12 235 8.81e-33 121
MS.gene54792.t1 AT5G47450 38.559 236 121 7 36 266 16 232 1.78e-32 120
MS.gene54792.t1 AT1G17810 35.743 249 137 7 29 270 14 246 5.24e-32 119
MS.gene54792.t1 AT4G01470 35.918 245 133 6 31 270 13 238 2.89e-31 117
MS.gene54792.t1 AT2G25810 34.298 242 139 6 30 270 10 232 2.08e-29 112
MS.gene54792.t1 AT4G17340 35.573 253 132 8 39 286 19 245 2.95e-28 109
MS.gene54792.t1 AT3G47440 33.191 235 136 7 39 270 23 239 7.19e-25 100
MS.gene54792.t1 AT4G19030 28.016 257 165 5 16 269 32 271 1.20e-19 87.0
MS.gene54792.t1 AT5G37820 28.326 233 142 7 39 269 43 252 6.19e-16 76.6
MS.gene54792.t1 AT5G37820 28.326 233 142 7 39 269 79 288 7.19e-16 76.6
MS.gene54792.t1 AT4G18910 26.800 250 161 6 25 269 36 268 1.14e-14 73.2
MS.gene54792.t1 AT1G80760 27.632 228 143 6 36 263 77 282 1.30e-14 73.2
MS.gene54792.t1 AT2G34390 27.007 274 163 8 3 269 20 263 1.30e-14 72.8
MS.gene54792.t1 AT1G31885 27.234 235 143 6 32 259 36 249 1.70e-13 70.1
MS.gene54792.t1 AT2G34390 30.151 199 119 6 78 269 36 221 4.60e-13 67.8
MS.gene54792.t1 AT1G31885 28.571 189 116 4 78 259 19 195 1.27e-12 67.0
MS.gene54792.t1 AT5G37810 26.724 232 147 6 39 269 43 252 2.10e-12 66.6
MS.gene54792.t1 AT3G06100 29.876 241 128 11 39 269 46 255 2.32e-11 63.2

Find 79 sgRNAs with CRISPR-Local

Find 268 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TACTGCACTGCTGGAATTTC+AGG 0.116467 1.2:-73111001 MS.gene54792:intron
CTTGGTATTGCTTGGGCTTT+TGG 0.167039 1.2:-73111046 MS.gene54792:CDS
CATTGGCTTTGCTGTATTCA+TGG 0.216375 1.2:-73108317 MS.gene54792:CDS
TGTGGTGGTGTTGGAATTCT+TGG 0.250599 1.2:-73111064 MS.gene54792:CDS
TGCTGTATTCATGGTTCATT+TGG 0.265351 1.2:-73108308 MS.gene54792:CDS
ACATGGTGGCTCAGTGTTTA+GGG 0.314737 1.2:-73110541 MS.gene54792:CDS
AGCAATAAGAGCCCTATAAA+AGG 0.318535 1.2:+73111180 None:intergenic
TTTGGGTTGGACCATTCATT+GGG 0.321050 1.2:-73107667 MS.gene54792:CDS
TACATGGTGGCTCAGTGTTT+AGG 0.322720 1.2:-73110542 MS.gene54792:CDS
GATTGTTGGTACCTTTGTTT+TGG 0.338987 1.2:-73110402 MS.gene54792:CDS
ATTAACCCAGCAGTGACATT+TGG 0.351379 1.2:-73110608 MS.gene54792:CDS
TTAAAGCTCTTGGATCATTC+AGG 0.352174 1.2:-73107595 MS.gene54792:CDS
CAGTGTTTAGGGGCTATTGC+TGG 0.353377 1.2:-73110530 MS.gene54792:CDS
GTCCTTGTTTACTGCACTGC+TGG 0.353886 1.2:-73111010 MS.gene54792:CDS
CACCAGCTTTAACATCAGTT+TGG 0.356493 1.2:+73111095 None:intergenic
TTGGAATTCTTGGTATTGCT+TGG 0.357512 1.2:-73111054 MS.gene54792:CDS
TGCTGGAGTTGGGTTGGTTA+AGG 0.360281 1.2:-73110513 MS.gene54792:CDS
AGTGCTTACTTTGATAGATA+TGG 0.363517 1.2:-73110482 MS.gene54792:CDS
CTCCATGATGGTTACAGTAC+TGG 0.363825 1.2:-73110443 MS.gene54792:CDS
TTAGGGGCTATTGCTGGAGT+TGG 0.368147 1.2:-73110524 MS.gene54792:CDS
TGTGTGGTCAGTGGATCTTT+TGG 0.380699 1.2:-73107685 MS.gene54792:intron
GAATCTCTAGCACTTCTCTT+AGG 0.389590 1.2:+73110353 None:intergenic
TGGAATTCTTGGTATTGCTT+GGG 0.394756 1.2:-73111053 MS.gene54792:CDS
GGCTATTGCTGGAGTTGGGT+TGG 0.397346 1.2:-73110519 MS.gene54792:CDS
TACAGTACTGGTGTTGGATT+AGG 0.404629 1.2:-73110431 MS.gene54792:CDS
TAAGATGAATTGATGGTAGA+AGG 0.409224 1.2:+73107631 None:intergenic
TTAACCCAGCAGTGACATTT+GGG 0.413578 1.2:-73110607 MS.gene54792:CDS
GCAGGTGCTGTTAAAGCTCT+TGG 0.418710 1.2:-73107605 MS.gene54792:CDS
TAGGGGCTATTGCTGGAGTT+GGG 0.422243 1.2:-73110523 MS.gene54792:CDS
GGTGATGCTTGTGGTGGTGT+TGG 0.424068 1.2:-73111073 MS.gene54792:CDS
CTGCTCTTAAGATGAATTGA+TGG 0.428710 1.2:+73107624 None:intergenic
ATGCTGAAGAACTCACAAAA+TGG 0.434066 1.2:-73111204 MS.gene54792:CDS
GGCACTCACATGGTCATCCC+AGG 0.454356 1.2:+73108207 None:intergenic
AATAGCCCAAATGTCACTGC+TGG 0.456045 1.2:+73110602 None:intergenic
ATCAATCCTGCTAGAAGTCT+TGG 0.462477 1.2:-73108259 MS.gene54792:CDS
TTGATGCCAGTGCCAGTGAC+TGG 0.491396 1.2:+73108277 None:intergenic
GGATTAGGTGCTGAGATTGT+TGG 0.494655 1.2:-73110416 MS.gene54792:CDS
TGCTAGAGATTCACATGTGC+CGG 0.507488 1.2:-73110342 MS.gene54792:intron
ACCATCCCAGTCACTGGCAC+TGG 0.513628 1.2:-73108283 MS.gene54792:CDS
TCTACAACAAAGATAAGCCC+TGG 0.515612 1.2:-73108225 MS.gene54792:CDS
TCAATGAGTGGTGCTGGTGG+AGG 0.515832 1.2:+73111226 None:intergenic
GCAATGGCTGCCCCAATGAA+TGG 0.519647 1.2:+73107656 None:intergenic
TCAGCATCAATGAGTGGTGC+TGG 0.521662 1.2:+73111220 None:intergenic
ATCCAAACTGATGTTAAAGC+TGG 0.525313 1.2:-73111097 MS.gene54792:CDS
CATCAATTCATCTTAAGAGC+AGG 0.526225 1.2:-73107623 MS.gene54792:CDS
TTGGCAACCATCCCAGTCAC+TGG 0.536043 1.2:-73108289 MS.gene54792:CDS
AGGATCAGTAGCAGAGAAAA+CGG 0.540023 1.2:+73110373 None:intergenic
GAACAATGCACTCAAACAGT+AGG 0.546368 1.2:+73107566 None:intergenic
GATCAGAGCAATTATGTACA+TGG 0.548140 1.2:-73110558 MS.gene54792:CDS
ATGAATACAGCAAAGCCAAT+GGG 0.548910 1.2:+73108319 None:intergenic
GTGGTGCTGGTGGAGGGTCA+TGG 0.549256 1.2:+73111233 None:intergenic
TTCCAGCAGTGCAGTAAACA+AGG 0.555662 1.2:+73111008 None:intergenic
CACCAGTACTGTAACCATCA+TGG 0.555683 1.2:+73110441 None:intergenic
TACTTTGATAGATATGGTGG+TGG 0.560516 1.2:-73110476 MS.gene54792:CDS
ACAGCAAAGCCAATGGGAAG+TGG 0.562056 1.2:+73108325 None:intergenic
CAGTCAAAACAGTAACGTAA+AGG 0.566620 1.2:+73111134 None:intergenic
CATGGTGGCTCAGTGTTTAG+GGG 0.567199 1.2:-73110540 MS.gene54792:CDS
CATGAATACAGCAAAGCCAA+TGG 0.582174 1.2:+73108318 None:intergenic
TGATGCCAGTGCCAGTGACT+GGG 0.591533 1.2:+73108278 None:intergenic
AACAATGCACTCAAACAGTA+GGG 0.595283 1.2:+73107567 None:intergenic
ATAGCCCAAATGTCACTGCT+GGG 0.598118 1.2:+73110603 None:intergenic
CAATGAGTGGTGCTGGTGGA+GGG 0.603087 1.2:+73111227 None:intergenic
GCAGAACCAAGACTTCTAGC+AGG 0.610357 1.2:+73108253 None:intergenic
GATGGTTACAGTACTGGTGT+TGG 0.612517 1.2:-73110437 MS.gene54792:CDS
CTACAACAAAGATAAGCCCT+GGG 0.614303 1.2:-73108224 MS.gene54792:CDS
GCATCAATGAGTGGTGCTGG+TGG 0.623719 1.2:+73111223 None:intergenic
GCCAGTGCCAGTGACTGGGA+TGG 0.626932 1.2:+73108282 None:intergenic
GTAATCCATCCAAATGGCAA+AGG 0.627109 1.2:-73111299 None:intergenic
AAAGCTGGTGGTGATGCTTG+TGG 0.631014 1.2:-73111082 MS.gene54792:CDS
TTGGGTTGGACCATTCATTG+GGG 0.640946 1.2:-73107666 MS.gene54792:CDS
GCACTCACATGGTCATCCCA+GGG 0.641943 1.2:+73108208 None:intergenic
CAAACTGATGTTAAAGCTGG+TGG 0.644812 1.2:-73111094 MS.gene54792:CDS
TTGATGGTAGAAGGCTGCAA+TGG 0.646870 1.2:+73107640 None:intergenic
GACGTTGAAGTTGCTGAACG+TGG 0.653894 1.2:-73111277 MS.gene54792:CDS
AACGGTGTAAACCAAAACAA+AGG 0.663291 1.2:+73110391 None:intergenic
GCTTACTTTGATAGATATGG+TGG 0.668285 1.2:-73110479 MS.gene54792:CDS
GCTGGTGGTGATGCTTGTGG+TGG 0.673105 1.2:-73111079 MS.gene54792:CDS
CAGAGCAATTATGTACATGG+TGG 0.699949 1.2:-73110555 MS.gene54792:CDS
AGTTCTTCAGCATCAATGAG+TGG 0.710311 1.2:+73111214 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAAATAAAGAATAAAATCA+TGG - chr1.2:73110355-73110374 MS.gene54792:CDS 10.0%
!! TAAATAAAGAATAAAATCAT+GGG - chr1.2:73110356-73110375 MS.gene54792:CDS 10.0%
!! TATAAAGTATGAAAATTTAT+GGG - chr1.2:73108203-73108222 MS.gene54792:intron 10.0%
!! TTATAAAGTATGAAAATTTA+TGG - chr1.2:73108202-73108221 MS.gene54792:intron 10.0%
!! TTCAATACAAATAATTTATA+TGG + chr1.2:73111082-73111101 None:intergenic 10.0%
!!! ACATATATTTTTTATTTAAG+TGG + chr1.2:73108824-73108843 None:intergenic 10.0%
!!! ATATATTTTTTATTTAAGTG+GGG + chr1.2:73108822-73108841 None:intergenic 10.0%
!!! CATATATTTTTTATTTAAGT+GGG + chr1.2:73108823-73108842 None:intergenic 10.0%
!!! TTAATTTTGAATAAGTTTTT+TGG - chr1.2:73109633-73109652 MS.gene54792:intron 10.0%
!!! TTTATTCTTTATTTATTAGA+AGG + chr1.2:73110351-73110370 None:intergenic 10.0%
!! AAATAAAAATGAAAACATAC+CGG + chr1.2:73108543-73108562 None:intergenic 15.0%
!! ATTATTTGTATTCATATGTT+TGG - chr1.2:73110447-73110466 MS.gene54792:CDS 15.0%
!!! AAATTGCGTTTTTATTTTAT+TGG - chr1.2:73109164-73109183 MS.gene54792:intron 15.0%
!!! AATGATGGTATTTATTATTT+TGG + chr1.2:73109924-73109943 None:intergenic 15.0%
!!! AATTGCGTTTTTATTTTATT+GGG - chr1.2:73109165-73109184 MS.gene54792:intron 15.0%
!!! ATTAGAGTTAATTTTTTTTG+AGG + chr1.2:73108793-73108812 None:intergenic 15.0%
!!! TATATTTTTTATTTAAGTGG+GGG + chr1.2:73108821-73108840 None:intergenic 15.0%
!!! TGTGTATATGATTTTTTTTT+AGG + chr1.2:73109484-73109503 None:intergenic 15.0%
!!! TTTTTGGCTTATATTTTAAA+GGG - chr1.2:73108156-73108175 MS.gene54792:intron 15.0%
!!! TTTTTTGGCTTATATTTTAA+AGG - chr1.2:73108155-73108174 MS.gene54792:intron 15.0%
!! AGTAATTACCAAAAACAATA+AGG - chr1.2:73109820-73109839 MS.gene54792:intron 20.0%
!! AGTATATATGACTAATAATC+AGG - chr1.2:73108710-73108729 MS.gene54792:intron 20.0%
!! ATCATTTCATTTGGAAATTA+TGG + chr1.2:73110027-73110046 None:intergenic 20.0%
!! ATGTTGAAAATATTGATCAA+AGG - chr1.2:73108681-73108700 MS.gene54792:intron 20.0%
!! ATTAAAAAATCAGAATCAGA+AGG + chr1.2:73109125-73109144 None:intergenic 20.0%
!! ATTATTTGTATTGAATGAAC+TGG - chr1.2:73111087-73111106 MS.gene54792:CDS 20.0%
!! CTAAAAAAAGATAAGGAATA+TGG - chr1.2:73111127-73111146 MS.gene54792:CDS 20.0%
!! GTAATTACCAAAAACAATAA+GGG - chr1.2:73109821-73109840 MS.gene54792:intron 20.0%
!! TGTTGAAAATATTGATCAAA+GGG - chr1.2:73108682-73108701 MS.gene54792:intron 20.0%
!! TTAAAAAATCAGAATCAGAA+GGG + chr1.2:73109124-73109143 None:intergenic 20.0%
!! TTAAGTGATTATACAAATTG+AGG + chr1.2:73108925-73108944 None:intergenic 20.0%
!! TTGTCAACTAAAAAAAGATA+AGG - chr1.2:73111120-73111139 MS.gene54792:CDS 20.0%
!! TTTAACAACATCATTTCATT+TGG + chr1.2:73110036-73110055 None:intergenic 20.0%
!!! AAAAATAAAGTATTTGCAAG+TGG - chr1.2:73109254-73109273 MS.gene54792:intron 20.0%
!!! ATAGGCTTTACATATATTTT+TGG - chr1.2:73111013-73111032 MS.gene54792:CDS 20.0%
!!! CAGAAATAAATTTGTTTTCA+AGG + chr1.2:73110183-73110202 None:intergenic 20.0%
!!! TTTAACTTTGAAGAGTTTTT+TGG - chr1.2:73108140-73108159 MS.gene54792:intron 20.0%
! AAAAAAATTAAGCGAAAGAG+AGG + chr1.2:73109078-73109097 None:intergenic 25.0%
! AAAGGGTTACTATTATTTGA+AGG - chr1.2:73108173-73108192 MS.gene54792:intron 25.0%
! AAGCACTAAGAAATTAATGA+TGG + chr1.2:73109939-73109958 None:intergenic 25.0%
! ACATAAAGTGACAAAACAAA+TGG + chr1.2:73110416-73110435 None:intergenic 25.0%
! ATAAAGTGACAAAACAAATG+GGG + chr1.2:73110414-73110433 None:intergenic 25.0%
! ATATATGTAAAGCCTATGTT+TGG + chr1.2:73111010-73111029 None:intergenic 25.0%
! ATCTTTAACACAAGCAATTA+TGG + chr1.2:73110796-73110815 None:intergenic 25.0%
! CATAAAGTGACAAAACAAAT+GGG + chr1.2:73110415-73110434 None:intergenic 25.0%
! TGTGATTCTTTCAATGAAAT+AGG + chr1.2:73108964-73108983 None:intergenic 25.0%
! TTCATACTCTTAATTCTTGT+AGG - chr1.2:73111056-73111075 MS.gene54792:CDS 25.0%
! TTTCTTTGGTAAAATTGAAC+TGG - chr1.2:73110833-73110852 MS.gene54792:intron 25.0%
!! AAAAAATATTTGGTTCCTCT+AGG + chr1.2:73109596-73109615 None:intergenic 25.0%
!! AAAAATATTTGGTTCCTCTA+GGG + chr1.2:73109595-73109614 None:intergenic 25.0%
!! AACATTACCCTTATTGTTTT+TGG + chr1.2:73109831-73109850 None:intergenic 25.0%
!! CAATATTTTCAACATATCTC+AGG + chr1.2:73108676-73108695 None:intergenic 25.0%
!! GATTTTCATCAATTCATGTT+TGG - chr1.2:73110769-73110788 MS.gene54792:intron 25.0%
!! GTTTGAAATGAATCTATTGT+AGG - chr1.2:73108225-73108244 MS.gene54792:CDS 25.0%
!! TGATAAGTCAATATCAGTTT+TGG - chr1.2:73110290-73110309 MS.gene54792:intron 25.0%
!! TTTAAAACACACCATAAACT+AGG + chr1.2:73109355-73109374 None:intergenic 25.0%
!!! AAAACTGATATTGACTTATC+AGG + chr1.2:73110291-73110310 None:intergenic 25.0%
!!! AATCCACTTTTTACAAGTTT+GGG + chr1.2:73110150-73110169 None:intergenic 25.0%
!!! GTTTGAACTAGTTTGTTTTT+TGG - chr1.2:73109682-73109701 MS.gene54792:intron 25.0%
!!! GTTTTTTGTTTTGTATGTGA+AGG - chr1.2:73110507-73110526 MS.gene54792:CDS 25.0%
!!! TTTTTACCTACTTTTTTGCT+TGG - chr1.2:73109864-73109883 MS.gene54792:intron 25.0%
AACATAACTAAGCTCATGTT+TGG - chr1.2:73110886-73110905 MS.gene54792:intron 30.0%
AACATGAGCTTAGTTATGTT+TGG + chr1.2:73110886-73110905 None:intergenic 30.0%
ACCAGCTAGAAGTTAAAATA+TGG + chr1.2:73110687-73110706 None:intergenic 30.0%
AGAAGTTAAAATATGGAACG+AGG + chr1.2:73110680-73110699 None:intergenic 30.0%
AGAGAGGTAGAATTTACTAA+CGG + chr1.2:73109062-73109081 None:intergenic 30.0%
AGTGCTTACTTTGATAGATA+TGG - chr1.2:73108381-73108400 MS.gene54792:intron 30.0%
GCTAGAAATCTAAGTTTCTT+TGG - chr1.2:73110819-73110838 MS.gene54792:intron 30.0%
GTGATTATACAAATTGAGGA+TGG + chr1.2:73108921-73108940 None:intergenic 30.0%
TAAAGTGACAAAACAAATGG+GGG + chr1.2:73110413-73110432 None:intergenic 30.0%
TACACAATCATGATAAGTCA+TGG - chr1.2:73109511-73109530 MS.gene54792:intron 30.0%
TCATTTGGAAATTATGGTGA+AGG + chr1.2:73110021-73110040 None:intergenic 30.0%
TCGTATCTGCTTTAATTCAA+TGG - chr1.2:73110477-73110496 MS.gene54792:CDS 30.0%
TGAAATGAATCTATTGTAGG+TGG - chr1.2:73108228-73108247 MS.gene54792:CDS 30.0%
TTTGTTTGTGTGAGTTTCAA+TGG + chr1.2:73107945-73107964 None:intergenic 30.0%
! ATATTTTGTTCCTTTGTGTG+TGG - chr1.2:73111162-73111181 MS.gene54792:CDS 30.0%
! CACAAAATGGTCCTTTTATA+GGG - chr1.2:73107672-73107691 MS.gene54792:CDS 30.0%
! TAAGATGAATTGATGGTAGA+AGG + chr1.2:73111235-73111254 None:intergenic 30.0%
! TCACAAAATGGTCCTTTTAT+AGG - chr1.2:73107671-73107690 MS.gene54792:CDS 30.0%
! TGTTTTGTATGTGAAGGTTT+TGG - chr1.2:73110513-73110532 MS.gene54792:CDS 30.0%
!! CTGGCATTGAAATCAATTTT+AGG - chr1.2:73110852-73110871 MS.gene54792:intron 30.0%
!! CTTTTATCTTGATTCGAACT+CGG + chr1.2:73107977-73107996 None:intergenic 30.0%
!! TTTTATCTTGATTCGAACTC+GGG + chr1.2:73107976-73107995 None:intergenic 30.0%
!!! GAATCCACTTTTTACAAGTT+TGG + chr1.2:73110151-73110170 None:intergenic 30.0%
!!! GTTACTGTTTTGACTGTTAT+TGG - chr1.2:73107736-73107755 MS.gene54792:intron 30.0%
!!! TAGTTTGTTTTTTGGTGCTT+TGG - chr1.2:73109690-73109709 MS.gene54792:intron 30.0%
!!! TCCATATTTTAACTTCTAGC+TGG - chr1.2:73110683-73110702 MS.gene54792:intron 30.0%
!!! TTTTTTATTTAAGTGGGGGT+TGG + chr1.2:73108817-73108836 None:intergenic 30.0%
AAAACACACCATAAACTAGG+AGG + chr1.2:73109352-73109371 None:intergenic 35.0%
AAAGTGAGAAATATCCCTAG+AGG - chr1.2:73109578-73109597 MS.gene54792:intron 35.0%
AACGGTGTAAACCAAAACAA+AGG + chr1.2:73108475-73108494 None:intergenic 35.0%
AAGAAGCCAAGCAAAAAAGT+AGG + chr1.2:73109873-73109892 None:intergenic 35.0%
AATTGCAACCTCCTAGTTTA+TGG - chr1.2:73109341-73109360 MS.gene54792:intron 35.0%
ACTCTCATACAAGGTATGAT+AGG + chr1.2:73110100-73110119 None:intergenic 35.0%
AGCAATAAGAGCCCTATAAA+AGG + chr1.2:73107686-73107705 None:intergenic 35.0%
ATATGACTAATAATCAGGCC+CGG - chr1.2:73108715-73108734 MS.gene54792:intron 35.0%
ATCCAAACTGATGTTAAAGC+TGG - chr1.2:73107766-73107785 MS.gene54792:intron 35.0%
ATGAATACAGCAAAGCCAAT+GGG + chr1.2:73110547-73110566 None:intergenic 35.0%
ATGATCTCAAATTGCTTCAG+AGG - chr1.2:73109762-73109781 MS.gene54792:intron 35.0%
ATGCCCAAACTTGTAAAAAG+TGG - chr1.2:73110144-73110163 MS.gene54792:intron 35.0%
ATGCTGAAGAACTCACAAAA+TGG - chr1.2:73107659-73107678 MS.gene54792:CDS 35.0%
CAGTCAAAACAGTAACGTAA+AGG + chr1.2:73107732-73107751 None:intergenic 35.0%
CATCAATTCATCTTAAGAGC+AGG - chr1.2:73111240-73111259 MS.gene54792:CDS 35.0%
CTCTCATACAAGGTATGATA+GGG + chr1.2:73110099-73110118 None:intergenic 35.0%
CTGACAATACCGATATTGTT+AGG + chr1.2:73108007-73108026 None:intergenic 35.0%
CTGCTCTTAAGATGAATTGA+TGG + chr1.2:73111242-73111261 None:intergenic 35.0%
GACAATGACATAGAAGTCAT+AGG + chr1.2:73110241-73110260 None:intergenic 35.0%
GATCAGAGCAATTATGTACA+TGG - chr1.2:73108305-73108324 MS.gene54792:CDS 35.0%
GCTTACTTTGATAGATATGG+TGG - chr1.2:73108384-73108403 MS.gene54792:intron 35.0%
GTTTGGATTCACAATGAGTT+TGG + chr1.2:73110950-73110969 None:intergenic 35.0%
TACCAGATTTATGTCCAGAT+AGG + chr1.2:73108890-73108909 None:intergenic 35.0%
TACTTTGATAGATATGGTGG+TGG - chr1.2:73108387-73108406 MS.gene54792:intron 35.0%
TGCTGTATTCATGGTTCATT+TGG - chr1.2:73110555-73110574 MS.gene54792:CDS 35.0%
TGGAAATTATGGTGAAGGAA+AGG + chr1.2:73110016-73110035 None:intergenic 35.0%
TGGAATTCTTGGTATTGCTT+GGG - chr1.2:73107810-73107829 MS.gene54792:intron 35.0%
TTAAAGCTCTTGGATCATTC+AGG - chr1.2:73111268-73111287 MS.gene54792:CDS 35.0%
TTGGAATTCTTGGTATTGCT+TGG - chr1.2:73107809-73107828 MS.gene54792:intron 35.0%
! AGTGCTTACTTGCATCTTTT+GGG - chr1.2:73109952-73109971 MS.gene54792:intron 35.0%
! CTCGGCTCTCTATTTAAAAT+AGG + chr1.2:73109193-73109212 None:intergenic 35.0%
! GCTTCTTTTAGTCAACATCT+TGG - chr1.2:73109886-73109905 MS.gene54792:intron 35.0%
! TAGTGCTTACTTGCATCTTT+TGG - chr1.2:73109951-73109970 MS.gene54792:intron 35.0%
! TTTATCTTGATTCGAACTCG+GGG + chr1.2:73107975-73107994 None:intergenic 35.0%
!! AGTGACATTTGGGCTATTTT+TGG - chr1.2:73108266-73108285 MS.gene54792:CDS 35.0%
!! CGAATCAAGATAAAAGTGTC+CGG - chr1.2:73107981-73108000 MS.gene54792:intron 35.0%
!! GATTGTTGGTACCTTTGTTT+TGG - chr1.2:73108461-73108480 MS.gene54792:intron 35.0%
!! GATTTGATTTGACCAAAGCA+CGG - chr1.2:73110916-73110935 MS.gene54792:intron 35.0%
!! TAGACTTTAGTTCTCCTATC+TGG - chr1.2:73108873-73108892 MS.gene54792:intron 35.0%
AACTCACACAAACAAATGCG+AGG - chr1.2:73107949-73107968 MS.gene54792:intron 40.0%
AATTTACTAACGGCGTCGTT+TGG + chr1.2:73109052-73109071 None:intergenic 40.0%
AGGATCAGTAGCAGAGAAAA+CGG + chr1.2:73108493-73108512 None:intergenic 40.0%
AGTTCTTCAGCATCAATGAG+TGG + chr1.2:73107652-73107671 None:intergenic 40.0%
ATCAATCCTGCTAGAAGTCT+TGG - chr1.2:73110604-73110623 MS.gene54792:CDS 40.0%
ATTAACCCAGCAGTGACATT+TGG - chr1.2:73108255-73108274 MS.gene54792:CDS 40.0%
CAAACTGATGTTAAAGCTGG+TGG - chr1.2:73107769-73107788 MS.gene54792:intron 40.0%
CAATACCGATATTGTTAGGC+CGG + chr1.2:73108003-73108022 None:intergenic 40.0%
CACTTATCCGTTGTGGAAAA+GGG + chr1.2:73109023-73109042 None:intergenic 40.0%
CAGAGCAATTATGTACATGG+TGG - chr1.2:73108308-73108327 MS.gene54792:CDS 40.0%
CATACATGCACTTCGAAAAC+AGG + chr1.2:73108604-73108623 None:intergenic 40.0%
CATGAATACAGCAAAGCCAA+TGG + chr1.2:73110548-73110567 None:intergenic 40.0%
CCAATTAGATTTGCCAGCTT+AGG + chr1.2:73110263-73110282 None:intergenic 40.0%
CCACAAACAACTCTCATACA+AGG + chr1.2:73110109-73110128 None:intergenic 40.0%
CCTAAGCTGGCAAATCTAAT+TGG - chr1.2:73110260-73110279 MS.gene54792:intron 40.0%
CCTTGTATGAGAGTTGTTTG+TGG - chr1.2:73110106-73110125 MS.gene54792:intron 40.0%
CGGTATTGTCAGTTGAGTTA+GGG - chr1.2:73108015-73108034 MS.gene54792:intron 40.0%
CTACAACAAAGATAAGCCCT+GGG - chr1.2:73110639-73110658 MS.gene54792:intron 40.0%
CTCCTATCTGGACATAAATC+TGG - chr1.2:73108885-73108904 MS.gene54792:intron 40.0%
GAATCTCTAGCACTTCTCTT+AGG + chr1.2:73108513-73108532 None:intergenic 40.0%
GTGGAAAAGGGAAAAACGAA+TGG + chr1.2:73109011-73109030 None:intergenic 40.0%
TCACTTATCCGTTGTGGAAA+AGG + chr1.2:73109024-73109043 None:intergenic 40.0%
TCGGTATTGTCAGTTGAGTT+AGG - chr1.2:73108014-73108033 MS.gene54792:intron 40.0%
TCTACAACAAAGATAAGCCC+TGG - chr1.2:73110638-73110657 MS.gene54792:intron 40.0%
TCTATGTCATTGTCCTAAGC+TGG - chr1.2:73110247-73110266 MS.gene54792:intron 40.0%
TGTATGAGAGTTGTTTGTGG+AGG - chr1.2:73110109-73110128 MS.gene54792:intron 40.0%
TTAACCCAGCAGTGACATTT+GGG - chr1.2:73108256-73108275 MS.gene54792:CDS 40.0%
TTTACCACCCTAGCATGTTT+AGG + chr1.2:73109982-73110001 None:intergenic 40.0%
TTTCCTTCCACATTTAGTCC+AGG + chr1.2:73109237-73109256 None:intergenic 40.0%
! AAAGCCTATGTTTGGTTCCA+TGG + chr1.2:73111002-73111021 None:intergenic 40.0%
! CACCAGCTTTAACATCAGTT+TGG + chr1.2:73107771-73107790 None:intergenic 40.0%
! CGTTTTTCCCTTTTCCACAA+CGG - chr1.2:73109013-73109032 MS.gene54792:intron 40.0%
! GATTTGTCACTTATCCGTTG+TGG + chr1.2:73109030-73109049 None:intergenic 40.0%
! GGTGCTAATTTTCTCCATGA+TGG - chr1.2:73108408-73108427 MS.gene54792:intron 40.0%
! TGATTTGTGGCCAATCCAAT+TGG - chr1.2:73110976-73110995 MS.gene54792:intron 40.0%
!! CATTGGCTTTGCTGTATTCA+TGG - chr1.2:73110546-73110565 MS.gene54792:CDS 40.0%
!! TACAGTACTGGTGTTGGATT+AGG - chr1.2:73108432-73108451 MS.gene54792:intron 40.0%
!! TCCAAACCAGCATTGATTTG+TGG - chr1.2:73110963-73110982 MS.gene54792:intron 40.0%
!! TTTGGGTTGGACCATTCATT+GGG - chr1.2:73111196-73111215 MS.gene54792:CDS 40.0%
!!! TTTTGGGTTGGACCATTCAT+TGG - chr1.2:73111195-73111214 MS.gene54792:CDS 40.0%
!!! TTTTTGAGGCCCTTAGCTTT+TGG + chr1.2:73108779-73108798 None:intergenic 40.0%
AATAGCCCAAATGTCACTGC+TGG + chr1.2:73108264-73108283 None:intergenic 45.0%
ACATGGTGGCTCAGTGTTTA+GGG - chr1.2:73108322-73108341 MS.gene54792:CDS 45.0%
ACCTCGTCTAAGGACTCAAA+AGG + chr1.2:73107914-73107933 None:intergenic 45.0%
AGCCTCCTATTTCATAGGGA+CGG - chr1.2:73109211-73109230 MS.gene54792:intron 45.0%
AGCGTGCCTTTGTGGTATAT+GGG - chr1.2:73110070-73110089 MS.gene54792:intron 45.0%
AGTGTCCGGCCTAACAATAT+CGG - chr1.2:73107995-73108014 MS.gene54792:intron 45.0%
ATAGCCCAAATGTCACTGCT+GGG + chr1.2:73108263-73108282 None:intergenic 45.0%
ATGAGAGTTGTTTGTGGAGG+TGG - chr1.2:73110112-73110131 MS.gene54792:intron 45.0%
CACCAGTACTGTAACCATCA+TGG + chr1.2:73108425-73108444 None:intergenic 45.0%
CTCCATGATGGTTACAGTAC+TGG - chr1.2:73108420-73108439 MS.gene54792:intron 45.0%
GGGTTCACCTAAACATGCTA+GGG - chr1.2:73109972-73109991 MS.gene54792:intron 45.0%
GGTACTTAACACCTCGTCTA+AGG + chr1.2:73107924-73107943 None:intergenic 45.0%
GTCAGTTGAGTTAGGGCTTA+TGG - chr1.2:73108022-73108041 MS.gene54792:intron 45.0%
GTGACAAAACAAATGGGGGA+TGG + chr1.2:73110409-73110428 None:intergenic 45.0%
TACATGGTGGCTCAGTGTTT+AGG - chr1.2:73108321-73108340 MS.gene54792:CDS 45.0%
TACTGCACTGCTGGAATTTC+AGG - chr1.2:73107862-73107881 MS.gene54792:intron 45.0%
TCCCTATGAAATAGGAGGCT+CGG + chr1.2:73109211-73109230 None:intergenic 45.0%
TGCTAGAGATTCACATGTGC+CGG - chr1.2:73108521-73108540 MS.gene54792:intron 45.0%
TGGGTTCACCTAAACATGCT+AGG - chr1.2:73109971-73109990 MS.gene54792:intron 45.0%
TTCACCTAAACATGCTAGGG+TGG - chr1.2:73109975-73109994 MS.gene54792:intron 45.0%
TTCCAGCAGTGCAGTAAACA+AGG + chr1.2:73107858-73107877 None:intergenic 45.0%
TTGGCCATGGAACCAAACAT+AGG - chr1.2:73110995-73111014 MS.gene54792:intron 45.0%
! CTTGGTATTGCTTGGGCTTT+TGG - chr1.2:73107817-73107836 MS.gene54792:intron 45.0%
! GATTGGCCACAAATCAATGC+TGG + chr1.2:73110972-73110991 None:intergenic 45.0%
! GCCACAAATCAATGCTGGTT+TGG + chr1.2:73110967-73110986 None:intergenic 45.0%
! GTGTGGTCAGTGGATCTTTT+GGG - chr1.2:73111179-73111198 MS.gene54792:CDS 45.0%
! TGTGGTGGTGTTGGAATTCT+TGG - chr1.2:73107799-73107818 MS.gene54792:intron 45.0%
! TGTGTGGTCAGTGGATCTTT+TGG - chr1.2:73111178-73111197 MS.gene54792:CDS 45.0%
! TGTTTGGTTCCATGGCCAAT+TGG + chr1.2:73110994-73111013 None:intergenic 45.0%
! TTGATGGTAGAAGGCTGCAA+TGG + chr1.2:73111226-73111245 None:intergenic 45.0%
! TTGATTTGACCAAAGCACGG+TGG - chr1.2:73110919-73110938 MS.gene54792:intron 45.0%
!! GATGGTTACAGTACTGGTGT+TGG - chr1.2:73108426-73108445 MS.gene54792:intron 45.0%
!! GGATTAGGTGCTGAGATTGT+TGG - chr1.2:73108447-73108466 MS.gene54792:intron 45.0%
!! TCCTTTTGAGTCCTTAGACG+AGG - chr1.2:73107910-73107929 MS.gene54792:intron 45.0%
!! TTGGGTTGGACCATTCATTG+GGG - chr1.2:73111197-73111216 MS.gene54792:CDS 45.0%
!! TTGGTGCTTTGGTTCTGCTT+TGG - chr1.2:73109701-73109720 MS.gene54792:intron 45.0%
!!! TGGGCTATTTTTGGCTCGTA+AGG - chr1.2:73108275-73108294 MS.gene54792:CDS 45.0%
!! TATTACATTAAAAAAATATT+TGG + chr1.2:73109606-73109625 None:intergenic 5.0%
!! TTTAGAAAATAAATAAATTA+AGG + chr1.2:73109561-73109580 None:intergenic 5.0%
ACAAATGGGGGATGGACAGA+TGG + chr1.2:73110401-73110420 None:intergenic 50.0%
ACAGCAAAGCCAATGGGAAG+TGG + chr1.2:73110541-73110560 None:intergenic 50.0%
AGCCGAGCCTCCTATTTCAT+AGG - chr1.2:73109206-73109225 MS.gene54792:intron 50.0%
CAAATGGGGGATGGACAGAT+GGG + chr1.2:73110400-73110419 None:intergenic 50.0%
CAGCGTGCCTTTGTGGTATA+TGG - chr1.2:73110069-73110088 MS.gene54792:intron 50.0%
CAGTGTTTAGGGGCTATTGC+TGG - chr1.2:73108333-73108352 MS.gene54792:CDS 50.0%
CATGGTGGCTCAGTGTTTAG+GGG - chr1.2:73108323-73108342 MS.gene54792:CDS 50.0%
CGTGCCTTTGTGGTATATGG+GGG - chr1.2:73110072-73110091 MS.gene54792:intron 50.0%
GACGTTGAAGTTGCTGAACG+TGG - chr1.2:73107586-73107605 MS.gene54792:CDS 50.0%
GATCCACTGACCACACACAA+AGG + chr1.2:73111175-73111194 None:intergenic 50.0%
GCAGAACCAAGACTTCTAGC+AGG + chr1.2:73110613-73110632 None:intergenic 50.0%
GCCGAGCCTCCTATTTCATA+GGG - chr1.2:73109207-73109226 MS.gene54792:intron 50.0%
GCGTGCCTTTGTGGTATATG+GGG - chr1.2:73110071-73110090 MS.gene54792:intron 50.0%
GGTTCCATGGCCAATTGGAT+TGG + chr1.2:73110989-73111008 None:intergenic 50.0%
GTTCCTTTGTGTGTGGTCAG+TGG - chr1.2:73111169-73111188 MS.gene54792:CDS 50.0%
TAGGGGCTATTGCTGGAGTT+GGG - chr1.2:73108340-73108359 MS.gene54792:intron 50.0%
TCAGCATCAATGAGTGGTGC+TGG + chr1.2:73107646-73107665 None:intergenic 50.0%
TTAGGGGCTATTGCTGGAGT+TGG - chr1.2:73108339-73108358 MS.gene54792:intron 50.0%
TTGGCAAAACCACCGTGCTT+TGG + chr1.2:73110931-73110950 None:intergenic 50.0%
! AAAGCTGGTGGTGATGCTTG+TGG - chr1.2:73107781-73107800 MS.gene54792:intron 50.0%
! GGTATTGCTTGGGCTTTTGG+TGG - chr1.2:73107820-73107839 MS.gene54792:intron 50.0%
! GTCCTTGTTTACTGCACTGC+TGG - chr1.2:73107853-73107872 MS.gene54792:intron 50.0%
! TATGGAACGAGGCACTCACA+TGG + chr1.2:73110669-73110688 None:intergenic 50.0%
! TGCAAGGTGCTCAATCAAGC+CGG - chr1.2:73108749-73108768 MS.gene54792:intron 50.0%
!! GCAGGTGCTGTTAAAGCTCT+TGG - chr1.2:73111258-73111277 MS.gene54792:CDS 50.0%
!! GGTCAGTGGATCTTTTGGGT+TGG - chr1.2:73111183-73111202 MS.gene54792:CDS 50.0%
!! GTTTTGGCACCACTTCCCAT+TGG - chr1.2:73110529-73110548 MS.gene54792:CDS 50.0%
!! TGCTGGAGTTGGGTTGGTTA+AGG - chr1.2:73108350-73108369 MS.gene54792:intron 50.0%
AATAATCAGGCCCGGCCTTG+AGG - chr1.2:73108723-73108742 MS.gene54792:intron 55.0%
ACAACAGCAGCGTGCCTTTG+TGG - chr1.2:73110062-73110081 MS.gene54792:intron 55.0%
AGCCGGGCATCCAAAAGCTA+AGG - chr1.2:73108766-73108785 MS.gene54792:intron 55.0%
ATAATCAGGCCCGGCCTTGA+GGG - chr1.2:73108724-73108743 MS.gene54792:intron 55.0%
CCAGGCCGTCCCTATGAAAT+AGG + chr1.2:73109219-73109238 None:intergenic 55.0%
CCTATTTCATAGGGACGGCC+TGG - chr1.2:73109216-73109235 MS.gene54792:intron 55.0%
CGGCCTGGACTAAATGTGGA+AGG - chr1.2:73109231-73109250 MS.gene54792:intron 55.0%
GCAATGGCTGCCCCAATGAA+TGG + chr1.2:73111210-73111229 None:intergenic 55.0%
GCACTCACATGGTCATCCCA+GGG + chr1.2:73110658-73110677 None:intergenic 55.0%
GCCGGGCATCCAAAAGCTAA+GGG - chr1.2:73108767-73108786 MS.gene54792:intron 55.0%
GGCCGTCCCTATGAAATAGG+AGG + chr1.2:73109216-73109235 None:intergenic 55.0%
GGCTATTGCTGGAGTTGGGT+TGG - chr1.2:73108344-73108363 MS.gene54792:intron 55.0%
GGGACCCCCATATACCACAA+AGG + chr1.2:73110079-73110098 None:intergenic 55.0%
GTGGCCAATCCAATTGGCCA+TGG - chr1.2:73110982-73111001 MS.gene54792:intron 55.0%
TGATGCCAGTGCCAGTGACT+GGG + chr1.2:73110588-73110607 None:intergenic 55.0%
TTGATGCCAGTGCCAGTGAC+TGG + chr1.2:73110589-73110608 None:intergenic 55.0%
TTGGCAACCATCCCAGTCAC+TGG - chr1.2:73110574-73110593 MS.gene54792:CDS 55.0%
! GCAAGGTGCTCAATCAAGCC+GGG - chr1.2:73108750-73108769 MS.gene54792:intron 55.0%
! GCATCAATGAGTGGTGCTGG+TGG + chr1.2:73107643-73107662 None:intergenic 55.0%
! GGTGATGCTTGTGGTGGTGT+TGG - chr1.2:73107790-73107809 MS.gene54792:intron 55.0%
!! CAATGAGTGGTGCTGGTGGA+GGG + chr1.2:73107639-73107658 None:intergenic 55.0%
!! GCCCTTAGCTTTTGGATGCC+CGG + chr1.2:73108771-73108790 None:intergenic 55.0%
!! TCAATGAGTGGTGCTGGTGG+AGG + chr1.2:73107640-73107659 None:intergenic 55.0%
ACCATCCCAGTCACTGGCAC+TGG - chr1.2:73110580-73110599 MS.gene54792:CDS 60.0%
ACCTTGCACTCCCTCAAGGC+CGG + chr1.2:73108737-73108756 None:intergenic 60.0%
GAGCACCTTGCACTCCCTCA+AGG + chr1.2:73108741-73108760 None:intergenic 60.0%
GGCACTCACATGGTCATCCC+AGG + chr1.2:73110659-73110678 None:intergenic 60.0%
GGGACGGCCTGGACTAAATG+TGG - chr1.2:73109227-73109246 MS.gene54792:intron 60.0%
! GCTGGTGGTGATGCTTGTGG+TGG - chr1.2:73107784-73107803 MS.gene54792:intron 60.0%
CCTTGCACTCCCTCAAGGCC+GGG + chr1.2:73108736-73108755 None:intergenic 65.0%
GCCAGTGCCAGTGACTGGGA+TGG + chr1.2:73110584-73110603 None:intergenic 65.0%
!! GTGGTGCTGGTGGAGGGTCA+TGG + chr1.2:73107633-73107652 None:intergenic 65.0%
! CCCGGCCTTGAGGGAGTGCA+AGG - chr1.2:73108733-73108752 MS.gene54792:intron 70.0%


Chromosome Type Strat End Strand Name
chr1.2 gene 73107577 73111308 73107577 ID=MS.gene54792
chr1.2 mRNA 73107577 73111308 73107577 ID=MS.gene54792.t1;Parent=MS.gene54792
chr1.2 exon 73111002 73111308 73111002 ID=MS.gene54792.t1.exon1;Parent=MS.gene54792.t1
chr1.2 CDS 73111002 73111308 73111002 ID=cds.MS.gene54792.t1;Parent=MS.gene54792.t1
chr1.2 exon 73110343 73110638 73110343 ID=MS.gene54792.t1.exon2;Parent=MS.gene54792.t1
chr1.2 CDS 73110343 73110638 73110343 ID=cds.MS.gene54792.t1;Parent=MS.gene54792.t1
chr1.2 exon 73108216 73108356 73108216 ID=MS.gene54792.t1.exon3;Parent=MS.gene54792.t1
chr1.2 CDS 73108216 73108356 73108216 ID=cds.MS.gene54792.t1;Parent=MS.gene54792.t1
chr1.2 exon 73107577 73107696 73107577 ID=MS.gene54792.t1.exon4;Parent=MS.gene54792.t1
chr1.2 CDS 73107577 73107696 73107577 ID=cds.MS.gene54792.t1;Parent=MS.gene54792.t1
Gene Sequence

>MS.gene54792

ATGGCAAAGGACGTTGAAGTTGCTGAACGTGGCTCTTTCTCTAACAAAGACTACCATGACCCTCCACCAGCACCACTCATTGATGCTGAAGAACTCACAAAATGGTCCTTTTATAGGGCTCTTATTGCTGAGTTCATTGCAACTTTACTTTTCCTTTACGTTACTGTTTTGACTGTTATTGGTTACAGTATCCAAACTGATGTTAAAGCTGGTGGTGATGCTTGTGGTGGTGTTGGAATTCTTGGTATTGCTTGGGCTTTTGGTGGCATGATCTTTGTCCTTGTTTACTGCACTGCTGGAATTTCAGGTTTGTTTTTCTTCAGATCTCTTTGTTCCTTTTGAGTCCTTAGACGAGGTGTTAAGTACCATTGAAACTCACACAAACAAATGCGAGGCCCCGAGTTCGAATCAAGATAAAAGTGTCCGGCCTAACAATATCGGTATTGTCAGTTGAGTTAGGGCTTATGGACGATCTCTTTATGTTTTTTTTTTTTTTTTTGTACTTAGAAATGTGAAGTCACTTTTCATTTTTGCTTAATATTTTTGTAATTTCTTTCAATTTTTTTAACTTTGAAGAGTTTTTTGGCTTATATTTTAAAGGGTTACTATTATTTGAAGGTGTGATTTATAAAGTATGAAAATTTATGGGTTTGAAATGAATCTATTGTAGGTGGTCACATTAACCCAGCAGTGACATTTGGGCTATTTTTGGCTCGTAAGGTGTCTTTGATCAGAGCAATTATGTACATGGTGGCTCAGTGTTTAGGGGCTATTGCTGGAGTTGGGTTGGTTAAGGCTTTTCAAAGTGCTTACTTTGATAGATATGGTGGTGGTGCTAATTTTCTCCATGATGGTTACAGTACTGGTGTTGGATTAGGTGCTGAGATTGTTGGTACCTTTGTTTTGGTTTACACCGTTTTCTCTGCTACTGATCCTAAGAGAAGTGCTAGAGATTCACATGTGCCGGTATGTTTTCATTTTTATTTTTATTTTTATTTTTTTTTATTTTGCATTTTCTTGTTGTCCTGTTTTCGAAGTGCATGTATGAATAGTACTGTATGAGTTGTGTAGAATATACAAACATGTGATTTAGTTGCCTGAGATATGTTGAAAATATTGATCAAAGGGAATGTAGTATATATGACTAATAATCAGGCCCGGCCTTGAGGGAGTGCAAGGTGCTCAATCAAGCCGGGCATCCAAAAGCTAAGGGCCTCAAAAAAAATTAACTCTAATACCAACCCCCACTTAAATAAAAAATATATGTGTTATTTCTTTACACATTTGAGTTTTTTCTAGACTTTAGTTCTCCTATCTGGACATAAATCTGGTACTATCAAACCATCCTCAATTTGTATAATCACTTAAACTGTCAATTTGAAAACCTATTTCATTGAAAGAATCACAACAATCATTTCTTTTTCACATAAACCATTCGTTTTTCCCTTTTCCACAACGGATAAGTGACAAATCCAAACGACGCCGTTAGTAAATTCTACCTCTCTTTCGCTTAATTTTTTTATATTTCGTTTCATGTTTAGAATCCCTTCTGATTCTGATTTTTTAATAAAGCTTAGCTACACAAAAAAATTGCGTTTTTATTTTATTGGGAGCCTATTTTAAATAGAGAGCCGAGCCTCCTATTTCATAGGGACGGCCTGGACTAAATGTGGAAGGAAAAATAAAGTATTTGCAAGTGGCTATGACATGAATTTTTCTAAATTAACAAGTTTGATCTACTTTTCTCTTAAATACTTTTGTTGTAATTGCAACCTCCTAGTTTATGGTGTGTTTTAAAGAATCAATTTTTTTTGTTGAGTTTAAAGAATCAATTTAAACAAGAAATAAATTAAAGCTCAATGATTAATTAGAAAATCAAATAATCTATTGATATGCTATATACACCTAAAAAAAAATCATATACACACACATGTTACACAATCATGATAAGTCATGGTTGTATTAAAACATATTTGAGATTCCTTAATTTATTTATTTTCTAAAGTGAGAAATATCCCTAGAGGAACCAAATATTTTTTTAATGTAATACTAATAATTAATTTTGAATAAGTTTTTTGGTGTAGTATATATGATTATATTAACAAGTTTGAACTAGTTTGTTTTTTGGTGCTTTGGTTCTGCTTTGGTTGTTTTTTAAGATATAAAATAATTAGTTTTGAAGACAATGATCTCAAATTGCTTCAGAGGAAAGAAAATAAAATCGTGCGTTTCATTTCAATAGTAGTAATTACCAAAAACAATAAGGGTAATGTTCAATGTTCATGATTTTTTACCTACTTTTTTGCTTGGCTTCTTTTAGTCAACATCTTGGATAGTAAGTTTTCCAAAATAATAAATACCATCATTAATTTCTTAGTGCTTACTTGCATCTTTTGGGTTCACCTAAACATGCTAGGGTGGTAAAGCTATCTTTTTCCTTTCCTTCACCATAATTTCCAAATGAAATGATGTTGTTAAATGACACACAACAGCAGCGTGCCTTTGTGGTATATGGGGGTCCCTATCATACCTTGTATGAGAGTTGTTTGTGGAGGTGGTTGAATTTCATGCCCAAACTTGTAAAAAGTGGATTCTAATTTGTTCCTTGAAAACAAATTTATTTCTGTTAAGTTTGAGATTAAAGTCTTCATAGTTATTGTGCCTATGACTTCTATGTCATTGTCCTAAGCTGGCAAATCTAATTGGAATTTCCTGATAAGTCAATATCAGTTTTGGTTCATCTATTATACTTTCAAATACTTTTACTAGATCCTTCTAATAAATAAAGAATAAAATCATGGGCTTCACATGCATGCATGTCCCATCTGTCCATCCCCCATTTGTTTTGTCACTTTATGTTTTTTTTTCTAATTATTTGTATTCATATGTTTGGAATATCTTCGTATCTGCTTTAATTCAATGGATGTAATGTTTTTTGTTTTGTATGTGAAGGTTTTGGCACCACTTCCCATTGGCTTTGCTGTATTCATGGTTCATTTGGCAACCATCCCAGTCACTGGCACTGGCATCAATCCTGCTAGAAGTCTTGGTTCTGCTGTTATCTACAACAAAGATAAGCCCTGGGATGACCATGTGAGTGCCTCGTTCCATATTTTAACTTCTAGCTGGTTTTGTTGTTGTTATGTGTTGAATGTAACGCGATTTATGTTTGAATACATTCACAAAACAAATGATTTTCATCAATTCATGTTTGGACCATAATTGCTTGTGTTAAAGATAAAGCTAGAAATCTAAGTTTCTTTGGTAAAATTGAACTGGCATTGAAATCAATTTTAGGTTCATAATCCAAACATAACTAAGCTCATGTTTGGAATCATCGATTTGATTTGACCAAAGCACGGTGGTTTTGCCAAACTCATTGTGAATCCAAACCAGCATTGATTTGTGGCCAATCCAATTGGCCATGGAACCAAACATAGGCTTTACATATATTTTTGGCTTATGTAATATATACTTAGTTCATACTCTTAATTCTTGTAGGCCATATAAATTATTTGTATTGAATGAACTGGCATTGTCAAGTTGTCAACTAAAAAAAGATAAGGAATATGGAAACTTTTTCTAATATTTTGTTCCTTTGTGTGTGGTCAGTGGATCTTTTGGGTTGGACCATTCATTGGGGCAGCCATTGCAGCCTTCTACCATCAATTCATCTTAAGAGCAGGTGCTGTTAAAGCTCTTGGATCATTCAGGAGTAACCCTACTGTTTGA
Protein sequence

>MS.gene54792.t1

MAKDVEVAERGSFSNKDYHDPPPAPLIDAEELTKWSFYRALIAEFIATLLFLYVTVLTVIGYSIQTDVKAGGDACGGVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLIRAIMYMVAQCLGAIAGVGLVKAFQSAYFDRYGGGANFLHDGYSTGVGLGAEIVGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPVTGTGINPARSLGSAVIYNKDKPWDDHWIFWVGPFIGAAIAAFYHQFILRAGAVKALGSFRSNPTV