AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene024637

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene024637.t1 MTR_5g010150 98.955 287 3 0 1 287 1 287 0.0 580
MS.gene024637.t1 MTR_8g098375 93.357 286 19 0 1 286 1 286 0.0 553
MS.gene024637.t1 MTR_4g415300 84.375 288 41 2 2 286 3 289 4.24e-180 498
MS.gene024637.t1 MTR_5g082070 84.615 286 42 1 3 286 4 289 9.76e-180 496
MS.gene024637.t1 MTR_3g070210 84.321 287 43 1 3 287 4 290 7.05e-179 494
MS.gene024637.t1 MTR_3g070210 83.784 259 40 1 3 259 4 262 7.25e-158 441
MS.gene024637.t1 MTR_5g010150 99.048 210 2 0 1 210 1 210 6.28e-153 426
MS.gene024637.t1 MTR_8g098375 86.463 229 29 1 1 227 1 229 1.70e-145 408
MS.gene024637.t1 MTR_7g101190 74.144 263 61 2 29 285 16 277 2.36e-140 397
MS.gene024637.t1 MTR_2g094270 68.519 270 77 2 23 285 11 279 1.02e-135 385
MS.gene024637.t1 MTR_4g059390 68.539 267 77 2 25 285 12 277 2.39e-131 374
MS.gene024637.t1 MTR_3g118010 68.679 265 82 1 21 285 6 269 7.44e-131 372
MS.gene024637.t1 MTR_3g070210 82.381 210 35 1 3 210 4 213 6.58e-124 352
MS.gene024637.t1 MTR_4g415300 81.132 212 36 2 2 210 3 213 1.02e-122 350
MS.gene024637.t1 MTR_2g094270 68.880 241 67 2 23 256 11 250 1.19e-119 343
MS.gene024637.t1 MTR_1g095070 76.316 190 44 1 96 285 23 211 1.54e-103 301
MS.gene024637.t1 MTR_1g095070 77.019 161 36 1 96 256 23 182 4.65e-87 258
MS.gene024637.t1 MTR_4g059390 66.146 192 58 2 25 210 12 202 2.21e-85 254
MS.gene024637.t1 MTR_1g077540 36.207 232 129 6 52 278 21 238 7.62e-33 121
MS.gene024637.t1 MTR_2g101370 36.325 234 134 5 47 277 15 236 1.79e-32 120
MS.gene024637.t1 MTR_6g069040 39.419 241 128 8 52 287 21 248 2.49e-32 120
MS.gene024637.t1 MTR_8g013680 36.325 234 132 6 46 274 11 232 1.08e-31 118
MS.gene024637.t1 MTR_1g115405 34.836 244 139 7 41 278 10 239 6.73e-29 110
MS.gene024637.t1 MTR_7g103030 33.745 243 137 7 42 277 11 236 6.98e-28 108
MS.gene024637.t1 MTR_7g023350 34.426 244 140 7 41 278 10 239 7.06e-28 108
MS.gene024637.t1 MTR_4g063090 32.773 238 145 5 41 275 10 235 1.28e-27 107
MS.gene024637.t1 MTR_1g006490 33.766 231 126 7 52 275 19 229 2.97e-27 106
MS.gene024637.t1 MTR_5g012810 37.168 226 126 6 52 274 19 231 1.71e-26 104
MS.gene024637.t1 MTR_1g006590 33.476 233 124 8 52 275 19 229 5.48e-26 103
MS.gene024637.t1 MTR_2g060360 32.365 241 125 9 52 278 19 235 3.33e-20 87.8
MS.gene024637.t1 MTR_5g079570 29.688 192 122 4 84 275 68 246 3.54e-19 85.1
MS.gene024637.t1 MTR_2g017590 32.627 236 136 7 55 287 39 254 5.98e-19 84.7
MS.gene024637.t1 MTR_8g087710 28.870 239 146 7 43 277 30 248 1.19e-18 84.0
MS.gene024637.t1 MTR_5g063930 27.632 228 150 5 47 274 32 244 1.55e-18 83.6
MS.gene024637.t1 MTR_4g084880 25.221 226 149 5 55 277 38 246 3.02e-18 82.8
MS.gene024637.t1 MTR_2g017660 29.075 227 145 6 41 267 28 238 3.41e-18 82.8
MS.gene024637.t1 MTR_3g008920 31.250 192 119 4 84 275 54 232 5.07e-18 82.0
MS.gene024637.t1 MTR_2g017620 31.120 241 143 7 50 287 36 256 7.77e-18 81.6
MS.gene024637.t1 MTR_2g017620 31.120 241 143 7 50 287 22 242 7.94e-18 81.3
MS.gene024637.t1 MTR_4g075570 28.205 195 118 7 99 279 95 281 4.30e-17 80.5
MS.gene024637.t1 MTR_2g017610 30.472 233 145 6 55 287 41 256 4.49e-17 79.7
MS.gene024637.t1 MTR_8g087720 27.615 239 156 6 49 287 35 256 4.89e-17 79.3
MS.gene024637.t1 MTR_4g075590 26.316 247 163 7 44 279 29 267 6.06e-17 79.7
MS.gene024637.t1 MTR_2g017570 30.043 233 146 6 55 287 41 256 1.24e-16 78.2
MS.gene024637.t1 MTR_4g006730 28.302 212 135 6 56 267 79 273 6.37e-16 76.6
MS.gene024637.t1 MTR_7g010650 27.966 236 150 7 50 284 35 251 7.94e-16 75.9
MS.gene024637.t1 MTR_2g104940 30.516 213 129 7 56 267 84 278 2.30e-15 75.1
MS.gene024637.t1 MTR_4g006630 29.609 179 112 4 89 267 22 186 5.86e-14 69.7
MS.gene024637.t1 MTR_4g006730 29.609 179 112 4 89 267 22 186 6.16e-14 69.7
MS.gene024637.t1 MTR_2g017620 31.053 190 111 5 101 287 3 175 1.05e-13 68.6
MS.gene024637.t1 MTR_1g097840 28.319 226 142 8 56 279 78 285 8.23e-13 67.8
MS.gene024637.t1 MTR_1g070385 26.872 227 143 7 49 272 59 265 6.91e-12 66.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene024637.t1 AT4G00430 86.316 285 38 1 3 287 4 287 0.0 506
MS.gene024637.t1 AT2G45960 85.614 285 39 2 3 287 4 286 1.14e-180 499
MS.gene024637.t1 AT4G23400 86.972 284 36 1 3 286 4 286 1.91e-175 486
MS.gene024637.t1 AT1G01620 86.667 285 36 2 3 287 4 286 2.22e-174 483
MS.gene024637.t1 AT3G61430 85.263 285 40 2 3 287 4 286 4.47e-172 477
MS.gene024637.t1 AT3G61430 85.263 285 40 2 3 287 4 286 4.47e-172 477
MS.gene024637.t1 AT2G45960 85.433 254 35 2 3 256 4 255 2.35e-159 444
MS.gene024637.t1 AT2G45960 85.433 254 35 2 3 256 4 255 7.60e-158 442
MS.gene024637.t1 AT1G01620 89.302 215 22 1 73 287 1 214 1.16e-138 390
MS.gene024637.t1 AT2G37170 72.308 260 65 3 27 280 55 313 7.29e-135 385
MS.gene024637.t1 AT2G37170 72.308 260 65 3 27 280 12 270 1.89e-134 382
MS.gene024637.t1 AT3G53420 72.308 260 65 2 27 280 14 272 2.94e-134 382
MS.gene024637.t1 AT3G53420 72.308 260 65 2 27 280 14 272 2.94e-134 382
MS.gene024637.t1 AT4G35100 71.103 263 75 1 23 285 9 270 2.99e-134 381
MS.gene024637.t1 AT4G35100 71.103 263 75 1 23 285 9 270 2.99e-134 381
MS.gene024637.t1 AT3G54820 67.636 275 82 2 17 285 3 276 5.91e-134 380
MS.gene024637.t1 AT2G39010 68.000 275 81 2 17 285 3 276 3.54e-133 379
MS.gene024637.t1 AT2G16850 71.984 257 71 1 29 285 13 268 1.18e-132 377
MS.gene024637.t1 AT2G37180 71.154 260 68 3 27 280 12 270 2.28e-132 377
MS.gene024637.t1 AT5G60660 70.076 264 72 2 28 285 15 277 3.65e-132 376
MS.gene024637.t1 AT4G00430 82.547 212 36 1 3 214 4 214 5.82e-126 358
MS.gene024637.t1 AT2G39010 64.000 200 65 2 17 210 3 201 1.37e-84 253
MS.gene024637.t1 AT5G47450 37.872 235 131 6 43 274 10 232 6.46e-31 116
MS.gene024637.t1 AT1G73190 35.146 239 127 7 52 278 24 246 8.04e-31 116
MS.gene024637.t1 AT4G01470 34.711 242 139 6 41 277 10 237 1.60e-30 115
MS.gene024637.t1 AT3G16240 36.364 231 132 5 47 274 14 232 2.07e-30 115
MS.gene024637.t1 AT1G17810 36.170 235 130 5 52 278 24 246 6.45e-30 114
MS.gene024637.t1 AT2G36830 34.286 245 134 9 41 276 10 236 7.55e-28 108
MS.gene024637.t1 AT3G26520 33.188 229 138 5 52 277 22 238 1.71e-27 107
MS.gene024637.t1 AT4G17340 36.596 235 134 6 43 274 10 232 6.46e-27 105
MS.gene024637.t1 AT3G47440 33.190 232 135 6 52 278 23 239 2.98e-25 101
MS.gene024637.t1 AT2G25810 33.906 233 137 8 52 282 19 236 1.47e-24 99.4
MS.gene024637.t1 AT4G19030 29.286 280 172 9 3 277 13 271 2.37e-19 86.3
MS.gene024637.t1 AT1G31885 31.556 225 141 7 45 267 36 249 9.58e-19 85.1
MS.gene024637.t1 AT4G18910 28.512 242 162 6 38 277 36 268 7.40e-17 79.3
MS.gene024637.t1 AT5G37820 30.726 179 109 5 89 266 77 241 1.33e-16 78.6
MS.gene024637.t1 AT5G37820 29.891 184 114 5 84 266 108 277 1.61e-16 78.6
MS.gene024637.t1 AT2G34390 26.119 268 168 9 16 277 20 263 7.03e-16 76.6
MS.gene024637.t1 AT1G31885 31.892 185 116 5 85 267 19 195 8.45e-16 75.9
MS.gene024637.t1 AT2G34390 27.511 229 144 8 55 277 9 221 5.56e-14 70.5
MS.gene024637.t1 AT3G06100 29.707 239 140 8 52 286 46 260 1.63e-13 69.7
MS.gene024637.t1 AT3G06100 29.661 236 138 8 55 286 1 212 3.98e-13 67.8
MS.gene024637.t1 AT4G10380 26.316 266 160 9 20 267 29 276 4.56e-13 68.6
MS.gene024637.t1 AT1G80760 29.004 231 143 8 49 277 77 288 9.30e-13 67.8
MS.gene024637.t1 AT5G37810 24.742 194 133 4 84 277 72 252 2.50e-12 66.2

Find 70 sgRNAs with CRISPR-Local

Find 112 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAAGGAATTGCTTGGGCTTT+TGG 0.161774 5.1:-3641920 MS.gene024637:CDS
TATTGCACTGCTGGAATTTC+AGG 0.165208 5.1:-3641875 MS.gene024637:intron
TTGGCTACAATTCCCATTAC+TGG 0.294571 5.1:-3640970 MS.gene024637:CDS
TTCTGGGTTGGACCTTTCAT+TGG 0.308099 5.1:-3640767 MS.gene024637:CDS
GCCCTTGTCTATTGCACTGC+TGG 0.332113 5.1:-3641884 MS.gene024637:CDS
GGAGAGGGAGGAAGATGTTA+AGG 0.347098 5.1:-3642179 MS.gene024637:CDS
ACCAACAGAAGCACACTTAG+AGG 0.357180 5.1:+3641946 None:intergenic
TGTGCTTCTGTTGGTATTCA+AGG 0.382436 5.1:-3641938 MS.gene024637:CDS
GATCCGAGCAATTCCTTTCA+AGG 0.393867 5.1:-3640711 MS.gene024637:CDS
TTGGTATTCAAGGAATTGCT+TGG 0.400234 5.1:-3641928 MS.gene024637:CDS
GCTCGTTATGAGTTGTATAA+AGG 0.401946 5.1:-3641328 MS.gene024637:CDS
ACAATTCCCATTACTGGAAC+TGG 0.407279 5.1:-3640964 MS.gene024637:CDS
GAATTGCTCGGATCACTATC+TGG 0.408932 5.1:+3640720 None:intergenic
ATGGTCTCTGTTGTATATTA+TGG 0.412666 5.1:+3640912 None:intergenic
AGAGTCTCTTGCATTTCTCT+TGG 0.418783 5.1:+3641201 None:intergenic
AGGGAGGAAGATGTTAAGGT+TGG 0.422571 5.1:-3642175 MS.gene024637:CDS
TGCAAGAGACTCTCACGTTC+CGG 0.436085 5.1:-3641191 MS.gene024637:intron
TGGTATTCAAGGAATTGCTT+GGG 0.437803 5.1:-3641927 MS.gene024637:CDS
TACACCAAGGGTGATGGTCT+TGG 0.441240 5.1:-3641280 MS.gene024637:CDS
CTTGGAGCTATCTGTGGTGC+TGG 0.453990 5.1:-3641376 MS.gene024637:CDS
TTCTCAGAAAAGAATGCATT+GGG 0.454430 5.1:-3642142 MS.gene024637:CDS
AATTACTCCCTTGCCTTGAA+AGG 0.455988 5.1:+3640698 None:intergenic
CCAGCACCTTTGTTTGAGCC+AGG 0.466057 5.1:-3642076 MS.gene024637:CDS
TTAATGCCAGTTCCAGTAAT+GGG 0.469401 5.1:+3640958 None:intergenic
ATAAATCCAGCGGTGACATT+CGG 0.475431 5.1:-3641460 MS.gene024637:CDS
CCCTCTAAGTGTGCTTCTGT+TGG 0.477771 5.1:-3641947 MS.gene024637:CDS
TACATAATAATGCAGTGTCT+TGG 0.479630 5.1:-3641394 MS.gene024637:CDS
GACCATGACTTCAACTCTCC+TGG 0.486464 5.1:+3642058 None:intergenic
AACTCTCCTGGCTCAAACAA+AGG 0.498554 5.1:+3642070 None:intergenic
CATCACTGTCTTAACTGTGA+TGG 0.500492 5.1:-3641984 MS.gene024637:CDS
GTTCTCAGAAAAGAATGCAT+TGG 0.502108 5.1:-3642143 MS.gene024637:CDS
GGTCTTGGAGCTGAGATTGT+TGG 0.502760 5.1:-3641265 MS.gene024637:CDS
CCTGGCTCAAACAAAGGTGC+TGG 0.505994 5.1:+3642076 None:intergenic
TGCATTTCTCTTGGCATCAG+TGG 0.515764 5.1:+3641210 None:intergenic
TAACTGTGATGGGTGTGAAT+AGG 0.515829 5.1:-3641973 MS.gene024637:CDS
GAAAAGAATGCATTGGGCAC+AGG 0.516964 5.1:-3642136 MS.gene024637:CDS
ATTAACCCAGCTAGGAGTCT+TGG 0.521008 5.1:-3640940 MS.gene024637:CDS
TATACAACAGAGACCATGCT+TGG 0.521813 5.1:-3640906 MS.gene024637:CDS
AGCTCCAAGACCATCACCCT+TGG 0.522666 5.1:+3641276 None:intergenic
AGCAATTCCTTTCAAGGCAA+GGG 0.527223 5.1:-3640705 MS.gene024637:CDS
GAGTGATAGCAAGGACTACA+AGG 0.528511 5.1:-3642107 MS.gene024637:CDS
GCAGCACCAAGACTCCTAGC+TGG 0.528907 5.1:+3640934 None:intergenic
CCATCACCCTTGGTGTAACC+AGG 0.529590 5.1:+3641286 None:intergenic
CAGTTAAGACAGTGATGTAA+AGG 0.533154 5.1:+3641990 None:intergenic
TTGCCTTGAAAGGAATTGCT+CGG 0.539077 5.1:+3640708 None:intergenic
AACAAACCGAATGTCACCGC+TGG 0.543714 5.1:+3641454 None:intergenic
ATCACTGTCTTAACTGTGAT+GGG 0.546772 5.1:-3641983 MS.gene024637:CDS
GCAAGTGCAGCTCCAATGAA+AGG 0.549715 5.1:+3640755 None:intergenic
GGAGCAAATGTTGTGAATCC+TGG 0.560797 5.1:-3641304 MS.gene024637:CDS
AGGAGCTCAGAGTGATAGCA+AGG 0.561366 5.1:-3642116 MS.gene024637:CDS
GGCTCAAACAAAGGTGCTGG+TGG 0.561806 5.1:+3642079 None:intergenic
GTTAATGCCAGTTCCAGTAA+TGG 0.566105 5.1:+3640957 None:intergenic
CCTGGTTACACCAAGGGTGA+TGG 0.571890 5.1:-3641286 MS.gene024637:CDS
GAGCAATTCCTTTCAAGGCA+AGG 0.588614 5.1:-3640706 MS.gene024637:CDS
CGTTATGAGTTGTATAAAGG+TGG 0.591045 5.1:-3641325 MS.gene024637:CDS
CAGTGTCTTGGAGCTATCTG+TGG 0.593126 5.1:-3641382 MS.gene024637:CDS
ACAGCAAACCCAATTGGAAG+AGG 0.593192 5.1:+3641006 None:intergenic
CAGCACCAAGACTCCTAGCT+GGG 0.594486 5.1:+3640935 None:intergenic
GTAGAATACTGCTCTTGTCA+AGG 0.594791 5.1:+3641414 None:intergenic
ATACAACAGAGACCATGCTT+GGG 0.595986 5.1:-3640905 MS.gene024637:CDS
AGCCAGGAGAGTTGAAGTCA+TGG 0.598254 5.1:-3642060 MS.gene024637:CDS
TTCCAGCAGTGCAATAGACA+AGG 0.608111 5.1:+3641882 None:intergenic
TGTGGTGCTGGTGTAGTGAA+AGG 0.611215 5.1:-3641364 MS.gene024637:CDS
CCAACAGAAGCACACTTAGA+GGG 0.621914 5.1:+3641947 None:intergenic
ATACATGGTCATCCCAAGCA+TGG 0.639779 5.1:+3640893 None:intergenic
GAACTGGCATTAACCCAGCT+AGG 0.641090 5.1:-3640948 MS.gene024637:CDS
TCCAGCAGTGCAATAGACAA+GGG 0.662213 5.1:+3641883 None:intergenic
GTGAATCCTGGTTACACCAA+GGG 0.663817 5.1:-3641292 MS.gene024637:CDS
AGGTGGGCACATAAATCCAG+CGG 0.718916 5.1:-3641470 MS.gene024637:CDS
TGTGAATCCTGGTTACACCA+AGG 0.762851 5.1:-3641293 MS.gene024637:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AGATTAATATATAAGATGTG+AGG - chr5.1:3641301-3641320 MS.gene024637:CDS 20.0%
!! CAGAACAAAAAATAAATTGA+AGG + chr5.1:3642042-3642061 None:intergenic 20.0%
!! GATTAATATATAAGATGTGA+GGG - chr5.1:3641302-3641321 MS.gene024637:CDS 20.0%
!!! ATGTTTGTATTTGTAGATTT+TGG - chr5.1:3641850-3641869 MS.gene024637:intron 20.0%
!!! TATTTAATGTTTGAGTTTTG+TGG - chr5.1:3642073-3642092 MS.gene024637:CDS 20.0%
!! AAGTCTTTAATCTGAAATGT+TGG - chr5.1:3641178-3641197 MS.gene024637:intron 25.0%
!! TTTAATCTGAAATGTTGGTT+TGG - chr5.1:3641183-3641202 MS.gene024637:intron 25.0%
!!! AAATTAAACAGTGGATTTTC+TGG - chr5.1:3642097-3642116 MS.gene024637:CDS 25.0%
!!! AATTAAACAGTGGATTTTCT+GGG - chr5.1:3642098-3642117 MS.gene024637:CDS 25.0%
!!! TGATATATGCTTCATTTTTG+CGG - chr5.1:3641811-3641830 MS.gene024637:intron 25.0%
ATGGTCTCTGTTGTATATTA+TGG + chr5.1:3641972-3641991 None:intergenic 30.0%
GTCAGTATTAGTGTCATATT+CGG + chr5.1:3641080-3641099 None:intergenic 30.0%
TACATAATAATGCAGTGTCT+TGG - chr5.1:3641487-3641506 MS.gene024637:intron 30.0%
TGAAATTCATTTACACGTAC+CGG + chr5.1:3641712-3641731 None:intergenic 30.0%
TTCTCAGAAAAGAATGCATT+GGG - chr5.1:3640739-3640758 MS.gene024637:CDS 30.0%
TTTCAGATTAAAGACTTGTC+CGG + chr5.1:3641175-3641194 None:intergenic 30.0%
TTTGAACAAAACTAACGAGA+TGG - chr5.1:3641380-3641399 MS.gene024637:CDS 30.0%
! TTTTGTGGCAAATTAAACAG+TGG - chr5.1:3642088-3642107 MS.gene024637:CDS 30.0%
AAAAACACAGCAAACCCAAT+TGG + chr5.1:3641884-3641903 None:intergenic 35.0%
AACAAAACTAACGAGATGGT+TGG - chr5.1:3641384-3641403 MS.gene024637:CDS 35.0%
AAGATGTGAGGGACTAAATT+AGG - chr5.1:3641313-3641332 MS.gene024637:CDS 35.0%
ACAAAACTAACGAGATGGTT+GGG - chr5.1:3641385-3641404 MS.gene024637:CDS 35.0%
AGATGTGAGGGACTAAATTA+GGG - chr5.1:3641314-3641333 MS.gene024637:CDS 35.0%
ATCACTGTCTTAACTGTGAT+GGG - chr5.1:3640898-3640917 MS.gene024637:CDS 35.0%
CAGTTAAGACAGTGATGTAA+AGG + chr5.1:3640894-3640913 None:intergenic 35.0%
CGTTATGAGTTGTATAAAGG+TGG - chr5.1:3641556-3641575 MS.gene024637:intron 35.0%
GCTCGTTATGAGTTGTATAA+AGG - chr5.1:3641553-3641572 MS.gene024637:intron 35.0%
GTTCTCAGAAAAGAATGCAT+TGG - chr5.1:3640738-3640757 MS.gene024637:CDS 35.0%
TCAATGTGTCACATAAACAC+CGG - chr5.1:3641153-3641172 MS.gene024637:intron 35.0%
TGGTATTCAAGGAATTGCTT+GGG - chr5.1:3640954-3640973 MS.gene024637:CDS 35.0%
TTAATGCCAGTTCCAGTAAT+GGG + chr5.1:3641926-3641945 None:intergenic 35.0%
TTGGTATTCAAGGAATTGCT+TGG - chr5.1:3640953-3640972 MS.gene024637:CDS 35.0%
!! ATGGTCATTTTATAGAGCTG+GGG - chr5.1:3640840-3640859 MS.gene024637:intron 35.0%
!! CATGGTCATTTTATAGAGCT+GGG - chr5.1:3640839-3640858 MS.gene024637:intron 35.0%
!! TCATGGTCATTTTATAGAGC+TGG - chr5.1:3640838-3640857 MS.gene024637:intron 35.0%
!!! AATTGGGTTTGCTGTGTTTT+TGG - chr5.1:3641883-3641902 MS.gene024637:CDS 35.0%
ACAAAGTGGAAGGACATACA+TGG + chr5.1:3642006-3642025 None:intergenic 40.0%
ACAATTCCCATTACTGGAAC+TGG - chr5.1:3641917-3641936 MS.gene024637:CDS 40.0%
AGAGTCTCTTGCATTTCTCT+TGG + chr5.1:3641683-3641702 None:intergenic 40.0%
AGCAATTCCTTTCAAGGCAA+GGG - chr5.1:3642176-3642195 MS.gene024637:CDS 40.0%
ATAAATCCAGCGGTGACATT+CGG - chr5.1:3641421-3641440 MS.gene024637:CDS 40.0%
ATACAACAGAGACCATGCTT+GGG - chr5.1:3641976-3641995 MS.gene024637:CDS 40.0%
CAACAGCATAACAAAGTGGA+AGG + chr5.1:3642016-3642035 None:intergenic 40.0%
CATCACTGTCTTAACTGTGA+TGG - chr5.1:3640897-3640916 MS.gene024637:CDS 40.0%
GCATCACCATCTTGAAATTG+TGG + chr5.1:3641343-3641362 None:intergenic 40.0%
GTAGAATACTGCTCTTGTCA+AGG + chr5.1:3641470-3641489 None:intergenic 40.0%
GTTAATGCCAGTTCCAGTAA+TGG + chr5.1:3641927-3641946 None:intergenic 40.0%
TATACAACAGAGACCATGCT+TGG - chr5.1:3641975-3641994 MS.gene024637:CDS 40.0%
TATTGCACTGCTGGAATTTC+AGG - chr5.1:3641006-3641025 MS.gene024637:CDS 40.0%
TGTGCTTCTGTTGGTATTCA+AGG - chr5.1:3640943-3640962 MS.gene024637:CDS 40.0%
TTGCCTTGAAAGGAATTGCT+CGG + chr5.1:3642176-3642195 None:intergenic 40.0%
TTGGCTACAATTCCCATTAC+TGG - chr5.1:3641911-3641930 MS.gene024637:CDS 40.0%
! TCCACTTTGTTATGCTGTTG+TGG - chr5.1:3642016-3642035 MS.gene024637:CDS 40.0%
! TGGTGTAGTGAAAGGTTTTG+AGG - chr5.1:3641525-3641544 MS.gene024637:intron 40.0%
! TTTTGGCACCTCTTCCAATT+GGG - chr5.1:3641867-3641886 MS.gene024637:intron 40.0%
!! AAACAGTGGATTTTCTGGGT+TGG - chr5.1:3642102-3642121 MS.gene024637:CDS 40.0%
!! ATTTTGGCACCTCTTCCAAT+TGG - chr5.1:3641866-3641885 MS.gene024637:intron 40.0%
!! GGTGACATTCGGTTTGTTTT+TGG - chr5.1:3641432-3641451 MS.gene024637:CDS 40.0%
!! GGTGTAGTGAAAGGTTTTGA+GGG - chr5.1:3641526-3641545 MS.gene024637:intron 40.0%
!! TAACTGTGATGGGTGTGAAT+AGG - chr5.1:3640908-3640927 MS.gene024637:CDS 40.0%
!!! CATTCGGTTTGTTTTTGGCT+AGG - chr5.1:3641437-3641456 MS.gene024637:CDS 40.0%
!!! TGCTGTGTTTTTGGTTCACT+TGG - chr5.1:3641892-3641911 MS.gene024637:CDS 40.0%
AACTCTCCTGGCTCAAACAA+AGG + chr5.1:3640814-3640833 None:intergenic 45.0%
ACAGCAAACCCAATTGGAAG+AGG + chr5.1:3641878-3641897 None:intergenic 45.0%
AGGGAGGAAGATGTTAAGGT+TGG - chr5.1:3640706-3640725 MS.gene024637:CDS 45.0%
ATACATGGTCATCCCAAGCA+TGG + chr5.1:3641991-3642010 None:intergenic 45.0%
ATTAACCCAGCTAGGAGTCT+TGG - chr5.1:3641941-3641960 MS.gene024637:CDS 45.0%
GAAAAGAATGCATTGGGCAC+AGG - chr5.1:3640745-3640764 MS.gene024637:CDS 45.0%
GAATTGCTCGGATCACTATC+TGG + chr5.1:3642164-3642183 None:intergenic 45.0%
GAGCAATTCCTTTCAAGGCA+AGG - chr5.1:3642175-3642194 MS.gene024637:CDS 45.0%
GAGTGATAGCAAGGACTACA+AGG - chr5.1:3640774-3640793 MS.gene024637:CDS 45.0%
GATCCGAGCAATTCCTTTCA+AGG - chr5.1:3642170-3642189 MS.gene024637:CDS 45.0%
GCCACAACAGCATAACAAAG+TGG + chr5.1:3642020-3642039 None:intergenic 45.0%
GGAGCAAATGTTGTGAATCC+TGG - chr5.1:3641577-3641596 MS.gene024637:intron 45.0%
GGGACTCCACAATTTCAAGA+TGG - chr5.1:3641334-3641353 MS.gene024637:CDS 45.0%
GTGAATCCTGGTTACACCAA+GGG - chr5.1:3641589-3641608 MS.gene024637:intron 45.0%
TCCAGCAGTGCAATAGACAA+GGG + chr5.1:3641001-3641020 None:intergenic 45.0%
TGCATTTCTCTTGGCATCAG+TGG + chr5.1:3641674-3641693 None:intergenic 45.0%
TGTGAATCCTGGTTACACCA+AGG - chr5.1:3641588-3641607 MS.gene024637:intron 45.0%
TTCCAGCAGTGCAATAGACA+AGG + chr5.1:3641002-3641021 None:intergenic 45.0%
! ACCAACAGAAGCACACTTAG+AGG + chr5.1:3640938-3640957 None:intergenic 45.0%
! CAAGGAATTGCTTGGGCTTT+TGG - chr5.1:3640961-3640980 MS.gene024637:CDS 45.0%
! CCAACAGAAGCACACTTAGA+GGG + chr5.1:3640937-3640956 None:intergenic 45.0%
! TTCTGGGTTGGACCTTTCAT+TGG - chr5.1:3642114-3642133 MS.gene024637:CDS 45.0%
AACAAACCGAATGTCACCGC+TGG + chr5.1:3641430-3641449 None:intergenic 50.0%
AGCCAGGAGAGTTGAAGTCA+TGG - chr5.1:3640821-3640840 MS.gene024637:intron 50.0%
AGGAGCTCAGAGTGATAGCA+AGG - chr5.1:3640765-3640784 MS.gene024637:CDS 50.0%
AGGTGGGCACATAAATCCAG+CGG - chr5.1:3641411-3641430 MS.gene024637:CDS 50.0%
CAGTGTCTTGGAGCTATCTG+TGG - chr5.1:3641499-3641518 MS.gene024637:intron 50.0%
CCCTCTAAGTGTGCTTCTGT+TGG - chr5.1:3640934-3640953 MS.gene024637:CDS 50.0%
CTAACGAGATGGTTGGGAAC+AGG - chr5.1:3641391-3641410 MS.gene024637:CDS 50.0%
GAACTGGCATTAACCCAGCT+AGG - chr5.1:3641933-3641952 MS.gene024637:CDS 50.0%
GACCATGACTTCAACTCTCC+TGG + chr5.1:3640826-3640845 None:intergenic 50.0%
GCAAGTGCAGCTCCAATGAA+AGG + chr5.1:3642129-3642148 None:intergenic 50.0%
GGAGAGGGAGGAAGATGTTA+AGG - chr5.1:3640702-3640721 MS.gene024637:CDS 50.0%
GGTCTTGGAGCTGAGATTGT+TGG - chr5.1:3641616-3641635 MS.gene024637:intron 50.0%
TGCAAGAGACTCTCACGTTC+CGG - chr5.1:3641690-3641709 MS.gene024637:intron 50.0%
! GGAATTGCTTGGGCTTTTGG+TGG - chr5.1:3640964-3640983 MS.gene024637:CDS 50.0%
! TACACCAAGGGTGATGGTCT+TGG - chr5.1:3641601-3641620 MS.gene024637:intron 50.0%
!! TGTGGTGCTGGTGTAGTGAA+AGG - chr5.1:3641517-3641536 MS.gene024637:intron 50.0%
ACGAGATGGTTGGGAACAGG+TGG - chr5.1:3641394-3641413 MS.gene024637:CDS 55.0%
AGCTCCAAGACCATCACCCT+TGG + chr5.1:3641608-3641627 None:intergenic 55.0%
CAGCACCAAGACTCCTAGCT+GGG + chr5.1:3641949-3641968 None:intergenic 55.0%
CCTGGTTACACCAAGGGTGA+TGG - chr5.1:3641595-3641614 MS.gene024637:intron 55.0%
CGAGATGGTTGGGAACAGGT+GGG - chr5.1:3641395-3641414 MS.gene024637:CDS 55.0%
CTTGGAGCTATCTGTGGTGC+TGG - chr5.1:3641505-3641524 MS.gene024637:intron 55.0%
GCCCTTGTCTATTGCACTGC+TGG - chr5.1:3640997-3641016 MS.gene024637:CDS 55.0%
! CCAGCACCTTTGTTTGAGCC+AGG - chr5.1:3640805-3640824 MS.gene024637:intron 55.0%
! CCATCACCCTTGGTGTAACC+AGG + chr5.1:3641598-3641617 None:intergenic 55.0%
! CCTGGCTCAAACAAAGGTGC+TGG + chr5.1:3640808-3640827 None:intergenic 55.0%
!! GGCTCAAACAAAGGTGCTGG+TGG + chr5.1:3640805-3640824 None:intergenic 55.0%
GCAGCACCAAGACTCCTAGC+TGG + chr5.1:3641950-3641969 None:intergenic 60.0%


Chromosome Type Strat End Strand Name
chr5.1 gene 3640700 3642203 3640700 ID=MS.gene024637
chr5.1 mRNA 3640700 3642203 3640700 ID=MS.gene024637.t1;Parent=MS.gene024637
chr5.1 exon 3641876 3642203 3641876 ID=MS.gene024637.t1.exon1;Parent=MS.gene024637.t1
chr5.1 CDS 3641876 3642203 3641876 ID=cds.MS.gene024637.t1;Parent=MS.gene024637.t1
chr5.1 exon 3641192 3641490 3641192 ID=MS.gene024637.t1.exon2;Parent=MS.gene024637.t1
chr5.1 CDS 3641192 3641490 3641192 ID=cds.MS.gene024637.t1;Parent=MS.gene024637.t1
chr5.1 exon 3640897 3641037 3640897 ID=MS.gene024637.t1.exon3;Parent=MS.gene024637.t1
chr5.1 CDS 3640897 3641037 3640897 ID=cds.MS.gene024637.t1;Parent=MS.gene024637.t1
chr5.1 exon 3640700 3640795 3640700 ID=MS.gene024637.t1.exon4;Parent=MS.gene024637.t1
chr5.1 CDS 3640700 3640795 3640700 ID=cds.MS.gene024637.t1;Parent=MS.gene024637.t1
Gene Sequence

>MS.gene024637

ATGGAGAGGGAGGAAGATGTTAAGGTTGGAGCAAACAAGTTCTCAGAAAAGAATGCATTGGGCACAGGAGCTCAGAGTGATAGCAAGGACTACAAGGAAGCACCACCAGCACCTTTGTTTGAGCCAGGAGAGTTGAAGTCATGGTCATTTTATAGAGCTGGGGTTGCTGAGTTTGTTGCAACTTTCTTGTTCCTTTACATCACTGTCTTAACTGTGATGGGTGTGAATAGGTCACCCTCTAAGTGTGCTTCTGTTGGTATTCAAGGAATTGCTTGGGCTTTTGGTGGTATGATCTTTGCCCTTGTCTATTGCACTGCTGGAATTTCAGGTAACTTCATTTTCTTTTCTTTACTTTTTTATGAATCATGAGACTTACACCGAATATGACACTAATACTGACACGTCGACATCAATAATAATATGAAAATGAGTAATTGAATGTAATCACATGTTTCAATGTGTCACATAAACACCGGACAAGTCTTTAATCTGAAATGTTGGTTTGGTATGTAGATTCATCGTAAAATATTATAAATAGTATATGATATTTTGTAAATTTAAGAGATTAATATGATGACTTGTCAAAAAAAAAAAAAGAGAGAGATTAATATATAAGATGTGAGGGACTAAATTAGGGACTCCACAATTTCAAGATGGTGATGCACTATAAATTATTTTGCTTTGAACAAAACTAACGAGATGGTTGGGAACAGGTGGGCACATAAATCCAGCGGTGACATTCGGTTTGTTTTTGGCTAGGAAGCTGTCCTTGACAAGAGCAGTATTCTACATAATAATGCAGTGTCTTGGAGCTATCTGTGGTGCTGGTGTAGTGAAAGGTTTTGAGGGTAATGCTCGTTATGAGTTGTATAAAGGTGGAGCAAATGTTGTGAATCCTGGTTACACCAAGGGTGATGGTCTTGGAGCTGAGATTGTTGGTACTTTTGTTCTTGTCTACACTGTCTTCTCTGCCACTGATGCCAAGAGAAATGCAAGAGACTCTCACGTTCCGGTACGTGTAAATGAATTTCAACTAATAAAATAGTGTCGTAAGATGAATATTTGTTTATAATGAAAAGTGTGTTAAAGAGTTGTATTTCTAGCATCTCTATGATATATGCTTCATTTTTGCGGACTAAGTAGTAATGTGATGTTTGTATTTGTAGATTTTGGCACCTCTTCCAATTGGGTTTGCTGTGTTTTTGGTTCACTTGGCTACAATTCCCATTACTGGAACTGGCATTAACCCAGCTAGGAGTCTTGGTGCTGCCATAATATACAACAGAGACCATGCTTGGGATGACCATGTATGTCCTTCCACTTTGTTATGCTGTTGTGGCCTTCAATTTATTTTTTGTTCTGCTTAAGTGACTTATTTAATGTTTGAGTTTTGTGGCAAATTAAACAGTGGATTTTCTGGGTTGGACCTTTCATTGGAGCTGCACTTGCTGCATTATATCACCAGATAGTGATCCGAGCAATTCCTTTCAAGGCAAGGGAGTAA
Protein sequence

>MS.gene024637.t1

MEREEDVKVGANKFSEKNALGTGAQSDSKDYKEAPPAPLFEPGELKSWSFYRAGVAEFVATFLFLYITVLTVMGVNRSPSKCASVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAVFYIIMQCLGAICGAGVVKGFEGNARYELYKGGANVVNPGYTKGDGLGAEIVGTFVLVYTVFSATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNRDHAWDDHWIFWVGPFIGAALAALYHQIVIRAIPFKARE