AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene025056

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene025056.t1 MTR_2g060360 97.630 211 5 0 4 214 44 254 3.13e-147 410
MS.gene025056.t1 MTR_8g013680 47.000 200 105 1 3 201 43 242 3.31e-62 194
MS.gene025056.t1 MTR_2g101370 46.970 198 104 1 4 200 45 242 1.87e-58 184
MS.gene025056.t1 MTR_5g012810 48.705 193 97 2 4 195 44 235 3.08e-51 166
MS.gene025056.t1 MTR_8g468730 75.424 118 11 1 97 214 1 100 3.16e-51 161
MS.gene025056.t1 MTR_4g063090 41.089 202 118 1 4 204 46 247 2.08e-49 161
MS.gene025056.t1 MTR_1g115405 40.777 206 115 2 4 202 46 251 5.81e-49 160
MS.gene025056.t1 MTR_7g023350 40.291 206 116 2 4 202 46 251 4.52e-47 155
MS.gene025056.t1 MTR_1g077540 42.132 197 113 1 4 199 46 242 5.09e-46 153
MS.gene025056.t1 MTR_1g006590 41.667 168 97 1 27 193 63 230 2.51e-41 140
MS.gene025056.t1 MTR_6g069040 43.030 165 93 1 36 199 78 242 2.66e-41 141
MS.gene025056.t1 MTR_6g044390 66.667 117 6 1 97 213 1 84 1.05e-40 134
MS.gene025056.t1 MTR_7g103030 41.584 202 115 3 4 204 46 245 1.52e-40 139
MS.gene025056.t1 MTR_1g006490 40.323 186 106 3 20 204 57 238 2.82e-40 138
MS.gene025056.t1 MTR_5g063930 34.896 192 119 3 13 199 64 254 1.51e-23 95.1
MS.gene025056.t1 MTR_8g006915 59.091 88 3 1 127 214 18 72 7.73e-22 85.5
MS.gene025056.t1 MTR_7g101190 35.912 181 97 5 30 195 94 270 5.32e-21 88.6
MS.gene025056.t1 MTR_2g094270 35.870 184 93 5 30 195 96 272 1.66e-20 87.4
MS.gene025056.t1 MTR_4g059390 37.222 180 96 5 30 195 94 270 1.64e-19 84.7
MS.gene025056.t1 MTR_4g415300 32.536 209 112 6 8 195 81 281 2.60e-18 81.6
MS.gene025056.t1 MTR_5g010150 32.836 201 109 7 15 195 84 278 1.74e-17 79.3
MS.gene025056.t1 MTR_5g082070 32.474 194 105 6 18 191 90 277 1.74e-17 79.3
MS.gene025056.t1 MTR_3g070210 33.505 194 101 7 29 200 103 290 2.14e-17 79.0
MS.gene025056.t1 MTR_1g095070 32.973 185 97 4 30 195 28 204 2.48e-17 77.8
MS.gene025056.t1 MTR_3g118010 33.889 180 102 4 30 195 86 262 5.37e-17 77.8
MS.gene025056.t1 MTR_8g098375 32.432 185 101 6 29 195 100 278 1.54e-16 76.6
MS.gene025056.t1 MTR_5g079570 33.523 176 111 4 32 203 87 260 4.85e-16 75.1
MS.gene025056.t1 MTR_1g097840 33.516 182 101 5 36 205 126 299 2.78e-15 73.2
MS.gene025056.t1 MTR_8g087710 31.492 181 121 2 20 199 75 253 3.29e-15 72.8
MS.gene025056.t1 MTR_3g008920 30.769 156 107 1 37 192 78 232 5.64e-15 72.0
MS.gene025056.t1 MTR_7g010650 33.333 183 100 6 12 184 65 235 6.00e-15 72.0
MS.gene025056.t1 MTR_4g084880 30.000 170 118 1 30 199 83 251 2.51e-14 70.5
MS.gene025056.t1 MTR_8g087720 30.636 173 113 3 30 199 84 252 5.50e-14 69.3
MS.gene025056.t1 MTR_2g017590 31.515 165 112 1 20 184 72 235 1.06e-13 68.6
MS.gene025056.t1 MTR_4g006730 29.524 210 132 5 12 213 16 217 1.35e-13 67.4
MS.gene025056.t1 MTR_2g017620 30.055 183 122 3 30 211 3 180 1.74e-13 66.6
MS.gene025056.t1 MTR_1g070385 30.952 168 112 4 37 203 115 279 1.80e-13 68.9
MS.gene025056.t1 MTR_4g006630 29.524 210 132 5 12 213 16 217 2.24e-13 67.0
MS.gene025056.t1 MTR_4g006730 29.524 210 132 5 12 213 103 304 2.29e-13 67.8
MS.gene025056.t1 MTR_2g104940 29.208 202 127 5 15 209 111 303 2.54e-13 67.8
MS.gene025056.t1 MTR_2g094270 34.568 162 81 5 30 176 96 247 2.68e-13 67.4
MS.gene025056.t1 MTR_2g017660 30.636 173 119 1 20 192 75 246 2.97e-13 67.4
MS.gene025056.t1 MTR_2g017620 30.055 183 122 3 30 211 70 247 4.31e-13 66.6
MS.gene025056.t1 MTR_2g017620 30.055 183 122 3 30 211 84 261 5.57e-13 66.6
MS.gene025056.t1 MTR_3g070210 33.987 153 80 5 29 166 103 249 1.32e-11 62.8
MS.gene025056.t1 MTR_1g095070 33.987 153 77 3 30 166 28 172 1.76e-11 61.2
MS.gene025056.t1 MTR_2g017610 29.630 189 123 4 30 210 84 270 5.61e-11 60.8
MS.gene025056.t1 MTR_2g017570 27.604 192 129 3 30 213 84 273 6.68e-11 60.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene025056.t1 AT3G47440 63.768 207 72 1 4 210 48 251 1.17e-89 264
MS.gene025056.t1 AT3G16240 51.515 198 95 1 4 200 44 241 1.01e-60 190
MS.gene025056.t1 AT5G47450 46.798 203 107 1 4 205 44 246 2.37e-57 182
MS.gene025056.t1 AT4G17340 48.293 205 101 2 4 203 44 248 9.92e-54 172
MS.gene025056.t1 AT4G01470 42.857 203 115 1 3 204 45 247 9.63e-52 167
MS.gene025056.t1 AT2G36830 43.564 202 112 2 4 204 46 246 2.83e-50 164
MS.gene025056.t1 AT3G26520 41.063 207 120 2 4 209 47 252 5.61e-48 158
MS.gene025056.t1 AT1G17810 46.707 167 88 1 36 201 86 252 1.13e-46 155
MS.gene025056.t1 AT2G25810 46.875 160 84 1 37 195 73 232 2.21e-44 149
MS.gene025056.t1 AT1G73190 43.636 165 92 1 36 199 86 250 1.69e-43 147
MS.gene025056.t1 AT5G60660 35.000 180 100 4 30 195 94 270 3.43e-21 89.4
MS.gene025056.t1 AT3G53420 35.000 180 100 4 30 195 94 270 3.69e-21 89.4
MS.gene025056.t1 AT3G53420 35.000 180 100 4 30 195 94 270 3.69e-21 89.4
MS.gene025056.t1 AT2G39010 35.955 178 101 4 30 195 93 269 1.10e-19 85.1
MS.gene025056.t1 AT2G37170 34.444 180 101 4 30 195 92 268 3.23e-19 84.0
MS.gene025056.t1 AT2G37170 34.444 180 101 4 30 195 135 311 4.44e-19 84.3
MS.gene025056.t1 AT2G37180 34.444 180 101 4 30 195 92 268 5.22e-19 83.2
MS.gene025056.t1 AT4G35100 33.880 183 98 5 30 195 87 263 9.10e-19 82.8
MS.gene025056.t1 AT4G35100 33.880 183 98 5 30 195 87 263 9.10e-19 82.8
MS.gene025056.t1 AT4G23400 33.503 197 112 5 15 195 85 278 1.20e-18 82.4
MS.gene025056.t1 AT3G54820 32.057 209 124 6 4 195 62 269 2.23e-18 81.6
MS.gene025056.t1 AT2G16850 33.880 183 98 5 30 195 85 261 3.73e-18 80.9
MS.gene025056.t1 AT3G61430 34.518 197 102 7 15 191 84 273 3.85e-18 80.9
MS.gene025056.t1 AT3G61430 34.518 197 102 7 15 191 84 273 3.85e-18 80.9
MS.gene025056.t1 AT4G00430 33.333 201 107 7 15 195 85 278 4.45e-18 80.9
MS.gene025056.t1 AT1G01620 33.831 201 106 7 15 195 12 205 6.75e-18 79.0
MS.gene025056.t1 AT2G45960 34.518 197 102 7 15 191 84 273 1.03e-17 79.7
MS.gene025056.t1 AT1G01620 33.831 201 106 7 15 195 84 277 1.21e-17 79.7
MS.gene025056.t1 AT1G52180 41.489 94 54 1 78 170 28 121 2.48e-15 70.1
MS.gene025056.t1 AT4G10380 31.156 199 123 4 15 207 109 299 3.04e-15 73.2
MS.gene025056.t1 AT5G37820 31.765 170 115 1 30 199 89 257 4.10e-14 69.7
MS.gene025056.t1 AT5G37820 31.765 170 115 1 30 199 125 293 6.37e-14 69.7
MS.gene025056.t1 AT1G80760 32.812 192 114 5 17 201 112 295 6.63e-14 69.3
MS.gene025056.t1 AT5G37810 30.000 170 118 1 30 199 89 257 1.28e-13 68.6
MS.gene025056.t1 AT3G06100 28.889 180 127 1 20 199 82 260 1.45e-13 68.2
MS.gene025056.t1 AT1G31885 28.636 220 133 5 12 211 17 232 1.69e-13 68.2
MS.gene025056.t1 AT3G06100 28.889 180 127 1 20 199 34 212 2.31e-13 67.0
MS.gene025056.t1 AT1G31885 29.703 202 118 5 30 211 89 286 2.64e-13 67.8
MS.gene025056.t1 AT4G18910 30.387 181 110 5 30 199 98 273 6.46e-13 66.6
MS.gene025056.t1 AT2G45960 34.320 169 87 6 15 166 84 245 5.09e-12 63.9
MS.gene025056.t1 AT4G19030 27.368 190 124 4 20 199 91 276 5.46e-12 63.9
MS.gene025056.t1 AT2G45960 34.320 169 87 6 15 166 84 245 7.76e-12 63.5

Find 63 sgRNAs with CRISPR-Local

Find 72 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAGAATTCTGATTCTATTAG+AGG 0.193327 4.3:+58067861 MS.gene025056:CDS
TCAACCGGAATACTTGTAAT+TGG 0.243741 4.3:+58067654 MS.gene025056:CDS
TTCGGATCTGCTTCCATTGC+CGG 0.254900 4.3:+58067747 MS.gene025056:CDS
TTGGTTGGTGCTGCTGTTGC+TGG 0.268882 4.3:+58067807 MS.gene025056:CDS
TCAGGAATCAAGCTGTCTAT+TGG 0.284879 4.3:+58067775 MS.gene025056:CDS
GCGGAAGAGATGACAGGATT+TGG 0.318727 4.3:+58067546 MS.gene025056:CDS
CTTCCATTGCCGGAACATTC+AGG 0.324826 4.3:+58067757 MS.gene025056:CDS
TGTCTATTGGGTTGGTCCTT+TGG 0.325188 4.3:+58067788 MS.gene025056:CDS
TAAACCAATTACAAGTATTC+CGG 0.338819 4.3:-58067658 None:intergenic
ATCAACCCTGCATGTGCTTT+CGG 0.346124 4.3:+58067729 MS.gene025056:CDS
GTCATTGAACCCAACAAGTT+TGG 0.353147 4.3:+58067164 MS.gene025056:CDS
GGGTTTCAGATGGAACTGTT+AGG 0.373541 4.3:+58067883 MS.gene025056:CDS
TACATTGCATGGGACATATC+TGG 0.375387 4.3:+58067231 MS.gene025056:CDS
CAGGAATCAAGCTGTCTATT+GGG 0.383404 4.3:+58067776 MS.gene025056:CDS
TTCCTCAAAGTCATCGTTGT+CGG 0.414197 4.3:+58067369 MS.gene025056:CDS
ATTTGGAGCATCAATATTAG+AGG 0.429331 4.3:+58067563 MS.gene025056:CDS
GCACCCACAACCAAACTTGT+TGG 0.436780 4.3:-58067174 None:intergenic
TGCCGACAACGATGACTTTG+AGG 0.450861 4.3:-58067371 None:intergenic
CACCCACAACCAAACTTGTT+GGG 0.455571 4.3:-58067173 None:intergenic
CAACGATGACTTTGAGGAAA+AGG 0.457590 4.3:-58067365 None:intergenic
GTTGGGTTCAATGACGCATC+CGG 0.464486 4.3:-58067156 None:intergenic
GGTTTCAGATGGAACTGTTA+GGG 0.464680 4.3:+58067884 MS.gene025056:CDS
TTAGCAGCAGGTCCATTCTC+TGG 0.467463 4.3:+58067699 MS.gene025056:CDS
CTTGTAATTGGTTTAATCGC+AGG 0.472259 4.3:+58067666 MS.gene025056:CDS
TGTTACCTTTGCAATGGCTG+TGG 0.474139 4.3:+58067272 MS.gene025056:CDS
ATTCCTGAATGTTCCGGCAA+TGG 0.481196 4.3:-58067760 None:intergenic
TATTGGGTTGGTCCTTTGGT+TGG 0.482215 4.3:+58067792 MS.gene025056:CDS
CGTGGTCAAGTAAATTCAAC+CGG 0.482865 4.3:+58067639 MS.gene025056:CDS
ACCCAATAAAAGAGAGCAGT+TGG 0.491942 4.3:-58067312 None:intergenic
TTGATTGACCCACCAGAGAA+TGG 0.496422 4.3:-58067711 None:intergenic
AGAATTCTGATTCTATTAGA+GGG 0.496583 4.3:+58067862 MS.gene025056:CDS
GAACCCAACAAGTTTGGTTG+TGG 0.516159 4.3:+58067170 MS.gene025056:CDS
GGAGCAAGTGTGTTAGCAGC+AGG 0.517606 4.3:+58067687 MS.gene025056:CDS
TCCTGCTGTTACCTTTGCAA+TGG 0.517646 4.3:+58067266 MS.gene025056:CDS
CCCAATAAAAGAGAGCAGTT+GGG 0.517838 4.3:-58067311 None:intergenic
TCTATTAGAGGGGTTTCAGA+TGG 0.522207 4.3:+58067873 MS.gene025056:CDS
GCAGATCCGAAAGCACATGC+AGG 0.523257 4.3:-58067735 None:intergenic
GTTACCTTTGCAATGGCTGT+GGG 0.523279 4.3:+58067273 MS.gene025056:CDS
AGCTTGATTCCTGAATGTTC+CGG 0.523609 4.3:-58067766 None:intergenic
TGTACACAATTTACGCTGCA+AGG 0.530874 4.3:+58067607 MS.gene025056:CDS
GCAACAGCAGCACCAACCAA+AGG 0.531682 4.3:-58067804 None:intergenic
CAAAGTCATCGTTGTCGGCA+TGG 0.534604 4.3:+58067374 MS.gene025056:CDS
GCCATTGCAAAGGTAACAGC+AGG 0.535121 4.3:-58067267 None:intergenic
GCAGCAGGTCCATTCTCTGG+TGG 0.535592 4.3:+58067702 MS.gene025056:CDS
AACCCAACAAGTTTGGTTGT+GGG 0.547817 4.3:+58067171 MS.gene025056:CDS
TCTTCCGCAATTGAATATGT+TGG 0.549444 4.3:-58067531 None:intergenic
TTTACGCTGCAAGGGACACT+AGG 0.555338 4.3:+58067616 MS.gene025056:CDS
CAGCAGGTCCATTCTCTGGT+GGG 0.565386 4.3:+58067703 MS.gene025056:CDS
TCAATTGCGGAAGAGATGAC+AGG 0.567654 4.3:+58067540 MS.gene025056:CDS
ATAGAATCAGAATTCTGAGA+AGG 0.587904 4.3:-58067855 None:intergenic
AATGACAGGGAAATTGATGC+CGG 0.588137 4.3:+58067137 None:intergenic
AATCAAGCTGTCTATTGGGT+TGG 0.591734 4.3:+58067780 MS.gene025056:CDS
CAGAGCAAAAGCACTTGCAA+TGG 0.601303 4.3:-58067196 None:intergenic
GTACACAATTTACGCTGCAA+GGG 0.602826 4.3:+58067608 MS.gene025056:CDS
TTTGGAGCATCAATATTAGA+GGG 0.603307 4.3:+58067564 MS.gene025056:CDS
GAATTCTGATTCTATTAGAG+GGG 0.605960 4.3:+58067863 MS.gene025056:CDS
TCCTCCCACAGCCATTGCAA+AGG 0.611836 4.3:-58067277 None:intergenic
ACCTTTGCAATGGCTGTGGG+AGG 0.626324 4.3:+58067276 MS.gene025056:CDS
CAGATCCGAAAGCACATGCA+GGG 0.630066 4.3:-58067734 None:intergenic
ATTGCATGGGACATATCTGG+TGG 0.647153 4.3:+58067234 MS.gene025056:CDS
TGTGCCAACATATTCAATTG+CGG 0.676658 4.3:+58067527 MS.gene025056:CDS
GCTGCAAGGGACACTAGGCG+TGG 0.685457 4.3:+58067621 MS.gene025056:CDS
GAAAAGGCAAGCAATAACAG+AGG 0.705928 4.3:-58067349 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
! AGAATTCTGATTCTATTAGA+GGG + chr4.3:58067862-58067881 MS.gene025056:CDS 25.0%
! CTATAGTACTTATGCAATAA+TGG + chr4.3:58067474-58067493 MS.gene025056:intron 25.0%
! TAAACCAATTACAAGTATTC+CGG - chr4.3:58067661-58067680 None:intergenic 25.0%
! TTGATGTTGAGCATATAAAA+GGG - chr4.3:58067417-58067436 None:intergenic 25.0%
! TTTGATGTTGAGCATATAAA+AGG - chr4.3:58067418-58067437 None:intergenic 25.0%
CAGAATTCTGATTCTATTAG+AGG + chr4.3:58067861-58067880 MS.gene025056:CDS 30.0%
GAATTCTGATTCTATTAGAG+GGG + chr4.3:58067863-58067882 MS.gene025056:CDS 30.0%
TGATGTTGAGCATATAAAAG+GGG - chr4.3:58067416-58067435 None:intergenic 30.0%
! ATAGAATCAGAATTCTGAGA+AGG - chr4.3:58067858-58067877 None:intergenic 30.0%
! ATTTGGAGCATCAATATTAG+AGG + chr4.3:58067563-58067582 MS.gene025056:CDS 30.0%
! TTCTGTTTTGTACATTGCAT+GGG + chr4.3:58067221-58067240 MS.gene025056:CDS 30.0%
! TTTGGAGCATCAATATTAGA+GGG + chr4.3:58067564-58067583 MS.gene025056:CDS 30.0%
CATATAAAAGGGGTAAGGTA+AGG - chr4.3:58067406-58067425 None:intergenic 35.0%
TCAACCGGAATACTTGTAAT+TGG + chr4.3:58067654-58067673 MS.gene025056:CDS 35.0%
TCTTCCGCAATTGAATATGT+TGG - chr4.3:58067534-58067553 None:intergenic 35.0%
TGTGCCAACATATTCAATTG+CGG + chr4.3:58067527-58067546 MS.gene025056:CDS 35.0%
TTGAGCATATAAAAGGGGTA+AGG - chr4.3:58067411-58067430 None:intergenic 35.0%
! CTTCTGTTTTGTACATTGCA+TGG + chr4.3:58067220-58067239 MS.gene025056:CDS 35.0%
! CTTGTAATTGGTTTAATCGC+AGG + chr4.3:58067666-58067685 MS.gene025056:CDS 35.0%
AACCCAACAAGTTTGGTTGT+GGG + chr4.3:58067171-58067190 MS.gene025056:CDS 40.0%
AATCAAGCTGTCTATTGGGT+TGG + chr4.3:58067780-58067799 MS.gene025056:CDS 40.0%
ACCCAATAAAAGAGAGCAGT+TGG - chr4.3:58067315-58067334 None:intergenic 40.0%
AGCTTGATTCCTGAATGTTC+CGG - chr4.3:58067769-58067788 None:intergenic 40.0%
CAGGAATCAAGCTGTCTATT+GGG + chr4.3:58067776-58067795 MS.gene025056:CDS 40.0%
CCCAATAAAAGAGAGCAGTT+GGG - chr4.3:58067314-58067333 None:intergenic 40.0%
CGTGGTCAAGTAAATTCAAC+CGG + chr4.3:58067639-58067658 MS.gene025056:CDS 40.0%
GAAAAGGCAAGCAATAACAG+AGG - chr4.3:58067352-58067371 None:intergenic 40.0%
GGTTTCAGATGGAACTGTTA+GGG + chr4.3:58067884-58067903 MS.gene025056:CDS 40.0%
GTACACAATTTACGCTGCAA+GGG + chr4.3:58067608-58067627 MS.gene025056:CDS 40.0%
GTCATTGAACCCAACAAGTT+TGG + chr4.3:58067164-58067183 MS.gene025056:CDS 40.0%
TACATTGCATGGGACATATC+TGG + chr4.3:58067231-58067250 MS.gene025056:CDS 40.0%
TCAGGAATCAAGCTGTCTAT+TGG + chr4.3:58067775-58067794 MS.gene025056:CDS 40.0%
TCTATTAGAGGGGTTTCAGA+TGG + chr4.3:58067873-58067892 MS.gene025056:CDS 40.0%
TGTACACAATTTACGCTGCA+AGG + chr4.3:58067607-58067626 MS.gene025056:CDS 40.0%
TTCCTCAAAGTCATCGTTGT+CGG + chr4.3:58067369-58067388 MS.gene025056:CDS 40.0%
! CAACGATGACTTTGAGGAAA+AGG - chr4.3:58067368-58067387 None:intergenic 40.0%
! CCCAACTGCTCTCTTTTATT+GGG + chr4.3:58067311-58067330 MS.gene025056:CDS 40.0%
! TCCCAACTGCTCTCTTTTAT+TGG + chr4.3:58067310-58067329 MS.gene025056:CDS 40.0%
ATCAACCCTGCATGTGCTTT+CGG + chr4.3:58067729-58067748 MS.gene025056:CDS 45.0%
ATTCCTGAATGTTCCGGCAA+TGG - chr4.3:58067763-58067782 None:intergenic 45.0%
ATTGCATGGGACATATCTGG+TGG + chr4.3:58067234-58067253 MS.gene025056:CDS 45.0%
GAACCCAACAAGTTTGGTTG+TGG + chr4.3:58067170-58067189 MS.gene025056:CDS 45.0%
GGGTTTCAGATGGAACTGTT+AGG + chr4.3:58067883-58067902 MS.gene025056:CDS 45.0%
GTTACCTTTGCAATGGCTGT+GGG + chr4.3:58067273-58067292 MS.gene025056:CDS 45.0%
TCAATTGCGGAAGAGATGAC+AGG + chr4.3:58067540-58067559 MS.gene025056:CDS 45.0%
TCCTGCTGTTACCTTTGCAA+TGG + chr4.3:58067266-58067285 MS.gene025056:CDS 45.0%
TGTTACCTTTGCAATGGCTG+TGG + chr4.3:58067272-58067291 MS.gene025056:CDS 45.0%
TTGATTGACCCACCAGAGAA+TGG - chr4.3:58067714-58067733 None:intergenic 45.0%
! CACCCACAACCAAACTTGTT+GGG - chr4.3:58067176-58067195 None:intergenic 45.0%
!! CAGAGCAAAAGCACTTGCAA+TGG - chr4.3:58067199-58067218 None:intergenic 45.0%
!! TATTGGGTTGGTCCTTTGGT+TGG + chr4.3:58067792-58067811 MS.gene025056:CDS 45.0%
!! TGTCTATTGGGTTGGTCCTT+TGG + chr4.3:58067788-58067807 MS.gene025056:CDS 45.0%
CAAAGTCATCGTTGTCGGCA+TGG + chr4.3:58067374-58067393 MS.gene025056:CDS 50.0%
CTTCCATTGCCGGAACATTC+AGG + chr4.3:58067757-58067776 MS.gene025056:CDS 50.0%
GCACCCACAACCAAACTTGT+TGG - chr4.3:58067177-58067196 None:intergenic 50.0%
GCCATTGCAAAGGTAACAGC+AGG - chr4.3:58067270-58067289 None:intergenic 50.0%
GCGGAAGAGATGACAGGATT+TGG + chr4.3:58067546-58067565 MS.gene025056:CDS 50.0%
GTTGGGTTCAATGACGCATC+CGG - chr4.3:58067159-58067178 None:intergenic 50.0%
TGCCGACAACGATGACTTTG+AGG - chr4.3:58067374-58067393 None:intergenic 50.0%
TTAGCAGCAGGTCCATTCTC+TGG + chr4.3:58067699-58067718 MS.gene025056:CDS 50.0%
TTCGGATCTGCTTCCATTGC+CGG + chr4.3:58067747-58067766 MS.gene025056:CDS 50.0%
TTTACGCTGCAAGGGACACT+AGG + chr4.3:58067616-58067635 MS.gene025056:CDS 50.0%
! CAGATCCGAAAGCACATGCA+GGG - chr4.3:58067737-58067756 None:intergenic 50.0%
ACCTTTGCAATGGCTGTGGG+AGG + chr4.3:58067276-58067295 MS.gene025056:CDS 55.0%
CAGCAGGTCCATTCTCTGGT+GGG + chr4.3:58067703-58067722 MS.gene025056:CDS 55.0%
GCAACAGCAGCACCAACCAA+AGG - chr4.3:58067807-58067826 None:intergenic 55.0%
GGAGCAAGTGTGTTAGCAGC+AGG + chr4.3:58067687-58067706 MS.gene025056:CDS 55.0%
TCCTCCCACAGCCATTGCAA+AGG - chr4.3:58067280-58067299 None:intergenic 55.0%
! GCAGATCCGAAAGCACATGC+AGG - chr4.3:58067738-58067757 None:intergenic 55.0%
!! TTGGTTGGTGCTGCTGTTGC+TGG + chr4.3:58067807-58067826 MS.gene025056:CDS 55.0%
GCAGCAGGTCCATTCTCTGG+TGG + chr4.3:58067702-58067721 MS.gene025056:CDS 60.0%
GCTGCAAGGGACACTAGGCG+TGG + chr4.3:58067621-58067640 MS.gene025056:CDS 65.0%


Chromosome Type Strat End Strand Name
chr4.3 gene 58067138 58067911 58067138 ID=MS.gene025056
chr4.3 mRNA 58067138 58067911 58067138 ID=MS.gene025056.t1;Parent=MS.gene025056
chr4.3 exon 58067138 58067395 58067138 ID=MS.gene025056.t1.exon1;Parent=MS.gene025056.t1
chr4.3 CDS 58067138 58067395 58067138 ID=cds.MS.gene025056.t1;Parent=MS.gene025056.t1
chr4.3 exon 58067525 58067911 58067525 ID=MS.gene025056.t1.exon2;Parent=MS.gene025056.t1
chr4.3 CDS 58067525 58067911 58067525 ID=cds.MS.gene025056.t1;Parent=MS.gene025056.t1
Gene Sequence

>MS.gene025056

ATGACAGGGAAATTGATGCCGGATGCGTCATTGAACCCAACAAGTTTGGTTGTGGGTGCCATTGCAAGTGCTTTTGCTCTGTCTTCTGTTTTGTACATTGCATGGGACATATCTGGTGGACATGTCAATCCTGCTGTTACCTTTGCAATGGCTGTGGGAGGACATATTAGTGTCCCAACTGCTCTCTTTTATTGGGTTGCTCAACTTATTGCCTCTGTTATTGCTTGCCTTTTCCTCAAAGTCATCGTTGTCGGCATGGTATTTTCCTTACCTTACCCCTTTTATATGCTCAACATCAAAATTTCAATTTTATCGAAATTTTGTAGTTGATTGTATCTATAGTACTTATGCAATAATGGTTCATACACTCGTGTATATTTTTTGCAGCATGTGCCAACATATTCAATTGCGGAAGAGATGACAGGATTTGGAGCATCAATATTAGAGGGTATACTAACATTTGTGTTAGTGTACACAATTTACGCTGCAAGGGACACTAGGCGTGGTCAAGTAAATTCAACCGGAATACTTGTAATTGGTTTAATCGCAGGAGCAAGTGTGTTAGCAGCAGGTCCATTCTCTGGTGGGTCAATCAACCCTGCATGTGCTTTCGGATCTGCTTCCATTGCCGGAACATTCAGGAATCAAGCTGTCTATTGGGTTGGTCCTTTGGTTGGTGCTGCTGTTGCTGGTCTTCTTTATGACAATGTTTTGTTTCCTTCTCAGAATTCTGATTCTATTAGAGGGGTTTCAGATGGAACTGTTAGGGTTTAA
Protein sequence

>MS.gene025056.t1

MTGKLMPDASLNPTSLVVGAIASAFALSSVLYIAWDISGGHVNPAVTFAMAVGGHISVPTALFYWVAQLIASVIACLFLKVIVVGMHVPTYSIAEEMTGFGASILEGILTFVLVYTIYAARDTRRGQVNSTGILVIGLIAGASVLAAGPFSGGSINPACAFGSASIAGTFRNQAVYWVGPLVGAAVAGLLYDNVLFPSQNSDSIRGVSDGTVRV