AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene71137

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene71137.t1 MTR_2g060360 98.086 209 4 0 1 209 46 254 8.25e-146 406
MS.gene71137.t1 MTR_8g013680 46.667 195 103 1 3 196 48 242 4.06e-60 189
MS.gene71137.t1 MTR_2g101370 47.150 193 101 1 4 195 50 242 3.13e-57 181
MS.gene71137.t1 MTR_8g468730 76.271 118 10 1 92 209 1 100 7.75e-52 162
MS.gene71137.t1 MTR_5g012810 49.206 189 94 2 3 190 48 235 7.42e-51 165
MS.gene71137.t1 MTR_4g063090 40.909 198 116 1 3 199 50 247 3.25e-48 158
MS.gene71137.t1 MTR_1g115405 40.594 202 113 2 3 197 50 251 8.23e-48 157
MS.gene71137.t1 MTR_7g023350 41.117 197 109 2 8 197 55 251 3.89e-46 153
MS.gene71137.t1 MTR_1g077540 42.487 193 110 1 3 194 50 242 3.27e-45 150
MS.gene71137.t1 MTR_1g006590 41.667 168 97 1 22 188 63 230 8.60e-42 142
MS.gene71137.t1 MTR_6g069040 43.030 165 93 1 31 194 78 242 1.76e-41 141
MS.gene71137.t1 MTR_6g044390 67.521 117 5 1 92 208 1 84 3.78e-41 135
MS.gene71137.t1 MTR_1g006490 40.323 186 106 3 15 199 57 238 1.00e-40 139
MS.gene71137.t1 MTR_7g103030 41.414 198 113 3 3 199 50 245 1.34e-39 136
MS.gene71137.t1 MTR_5g063930 34.896 192 119 3 8 194 64 254 2.22e-23 94.4
MS.gene71137.t1 MTR_8g006915 60.227 88 2 1 122 209 18 72 2.41e-22 86.7
MS.gene71137.t1 MTR_7g101190 35.912 181 97 5 25 190 94 270 7.51e-21 88.2
MS.gene71137.t1 MTR_2g094270 35.870 184 93 5 25 190 96 272 2.77e-20 86.7
MS.gene71137.t1 MTR_4g059390 37.222 180 96 5 25 190 94 270 2.90e-19 84.0
MS.gene71137.t1 MTR_4g415300 32.536 209 112 6 3 190 81 281 4.69e-18 80.5
MS.gene71137.t1 MTR_5g010150 32.836 201 109 7 10 190 84 278 2.56e-17 78.6
MS.gene71137.t1 MTR_3g070210 33.505 194 101 7 24 195 103 290 3.22e-17 78.2
MS.gene71137.t1 MTR_1g095070 32.973 185 97 4 25 190 28 204 3.90e-17 77.0
MS.gene71137.t1 MTR_5g082070 32.474 194 105 6 13 186 90 277 4.09e-17 78.2
MS.gene71137.t1 MTR_3g118010 33.333 183 99 5 25 190 86 262 9.14e-17 77.0
MS.gene71137.t1 MTR_8g098375 32.432 185 101 6 24 190 100 278 2.34e-16 75.9
MS.gene71137.t1 MTR_5g079570 33.523 176 111 4 27 198 87 260 1.71e-15 73.2
MS.gene71137.t1 MTR_8g087710 31.868 182 119 3 15 194 75 253 2.75e-15 72.8
MS.gene71137.t1 MTR_1g097840 33.516 182 101 5 31 200 126 299 2.91e-15 73.2
MS.gene71137.t1 MTR_7g010650 33.333 183 100 6 7 179 65 235 6.58e-15 71.6
MS.gene71137.t1 MTR_3g008920 30.769 156 107 1 32 187 78 232 1.12e-14 70.9
MS.gene71137.t1 MTR_4g084880 30.000 170 118 1 25 194 83 251 2.75e-14 70.1
MS.gene71137.t1 MTR_8g087720 30.636 173 113 3 25 194 84 252 6.18e-14 68.9
MS.gene71137.t1 MTR_2g017590 32.716 162 104 3 20 179 77 235 1.11e-13 68.2
MS.gene71137.t1 MTR_4g006730 29.524 210 132 5 7 208 16 217 1.16e-13 67.4
MS.gene71137.t1 MTR_2g017620 30.435 184 120 4 25 206 3 180 1.74e-13 66.6
MS.gene71137.t1 MTR_4g006630 29.524 210 132 5 7 208 16 217 1.93e-13 67.0
MS.gene71137.t1 MTR_2g104940 29.208 202 127 5 10 204 111 303 2.40e-13 67.8
MS.gene71137.t1 MTR_2g017660 30.636 173 119 1 15 187 75 246 2.48e-13 67.4
MS.gene71137.t1 MTR_4g006730 29.524 210 132 5 7 208 103 304 2.49e-13 67.8
MS.gene71137.t1 MTR_1g070385 30.952 168 112 4 32 198 115 279 3.52e-13 68.2
MS.gene71137.t1 MTR_2g017620 30.435 184 120 4 25 206 70 247 3.94e-13 66.6
MS.gene71137.t1 MTR_2g094270 34.568 162 81 5 25 171 96 247 4.48e-13 66.6
MS.gene71137.t1 MTR_2g017620 30.435 184 120 4 25 206 84 261 4.85e-13 66.6
MS.gene71137.t1 MTR_3g070210 33.987 153 80 5 24 161 103 249 1.97e-11 62.0
MS.gene71137.t1 MTR_1g095070 33.987 153 77 3 25 161 28 172 2.92e-11 60.5
MS.gene71137.t1 MTR_2g017610 29.016 193 125 4 25 208 84 273 2.99e-11 61.6
MS.gene71137.t1 MTR_2g017570 29.534 193 124 5 25 208 84 273 5.43e-11 60.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene71137.t1 AT3G47440 65.152 198 66 1 8 205 57 251 8.29e-89 262
MS.gene71137.t1 AT3G16240 51.546 194 93 1 3 195 48 241 2.80e-59 186
MS.gene71137.t1 AT5G47450 46.734 199 105 1 3 200 48 246 3.96e-56 179
MS.gene71137.t1 AT4G17340 48.259 201 99 2 3 198 48 248 2.08e-52 169
MS.gene71137.t1 AT4G01470 42.424 198 113 1 3 199 50 247 4.74e-50 163
MS.gene71137.t1 AT2G36830 43.434 198 110 2 3 199 50 246 5.93e-49 160
MS.gene71137.t1 AT3G26520 41.379 203 117 2 3 204 51 252 3.42e-47 155
MS.gene71137.t1 AT1G17810 46.707 167 88 1 31 196 86 252 1.02e-46 155
MS.gene71137.t1 AT2G25810 46.875 160 84 1 32 190 73 232 3.65e-44 148
MS.gene71137.t1 AT1G73190 43.636 165 92 1 31 194 86 250 1.72e-43 147
MS.gene71137.t1 AT5G60660 35.000 180 100 4 25 190 94 270 5.64e-21 88.6
MS.gene71137.t1 AT3G53420 35.000 180 100 4 25 190 94 270 6.95e-21 88.2
MS.gene71137.t1 AT3G53420 35.000 180 100 4 25 190 94 270 6.95e-21 88.2
MS.gene71137.t1 AT2G39010 35.955 178 101 4 25 190 93 269 1.92e-19 84.3
MS.gene71137.t1 AT2G37170 34.444 180 101 4 25 190 92 268 6.95e-19 82.8
MS.gene71137.t1 AT2G37180 34.444 180 101 4 25 190 92 268 8.79e-19 82.4
MS.gene71137.t1 AT2G37170 34.444 180 101 4 25 190 135 311 8.95e-19 83.2
MS.gene71137.t1 AT4G35100 33.880 183 98 5 25 190 87 263 1.65e-18 81.6
MS.gene71137.t1 AT4G35100 33.880 183 98 5 25 190 87 263 1.65e-18 81.6
MS.gene71137.t1 AT4G23400 33.503 197 112 5 10 190 85 278 1.71e-18 82.0
MS.gene71137.t1 AT2G16850 33.880 183 98 5 25 190 85 261 5.98e-18 80.1
MS.gene71137.t1 AT3G54820 32.195 205 121 6 3 190 66 269 6.68e-18 80.1
MS.gene71137.t1 AT3G61430 34.518 197 102 7 10 186 84 273 7.03e-18 80.1
MS.gene71137.t1 AT3G61430 34.518 197 102 7 10 186 84 273 7.03e-18 80.1
MS.gene71137.t1 AT4G00430 33.333 201 107 7 10 190 85 278 9.27e-18 79.7
MS.gene71137.t1 AT1G01620 33.831 201 106 7 10 190 12 205 1.23e-17 78.2
MS.gene71137.t1 AT1G01620 33.831 201 106 7 10 190 84 277 1.92e-17 79.0
MS.gene71137.t1 AT2G45960 34.518 197 102 7 10 186 84 273 2.00e-17 79.0
MS.gene71137.t1 AT1G52180 41.489 94 54 1 73 165 28 121 2.17e-15 70.1
MS.gene71137.t1 AT4G10380 31.156 199 123 4 10 202 109 299 3.19e-15 73.2
MS.gene71137.t1 AT5G37820 31.765 170 115 1 25 194 89 257 4.93e-14 69.7
MS.gene71137.t1 AT1G31885 29.091 220 132 5 7 206 17 232 5.52e-14 69.3
MS.gene71137.t1 AT5G37820 31.765 170 115 1 25 194 125 293 6.51e-14 69.7
MS.gene71137.t1 AT1G80760 32.812 192 114 5 12 196 112 295 6.85e-14 69.3
MS.gene71137.t1 AT1G31885 30.198 202 117 5 25 206 89 286 1.04e-13 68.9
MS.gene71137.t1 AT5G37810 30.000 170 118 1 25 194 89 257 1.20e-13 68.6
MS.gene71137.t1 AT3G06100 28.889 180 127 1 15 194 82 260 1.88e-13 67.8
MS.gene71137.t1 AT3G06100 28.889 180 127 1 15 194 34 212 2.72e-13 66.6
MS.gene71137.t1 AT4G18910 30.387 181 110 5 25 194 98 273 7.25e-13 66.2
MS.gene71137.t1 AT4G19030 27.368 190 124 4 15 194 91 276 5.57e-12 63.9
MS.gene71137.t1 AT2G45960 34.320 169 87 6 10 161 84 245 9.28e-12 63.2
MS.gene71137.t1 AT2G45960 34.320 169 87 6 10 161 84 245 1.43e-11 62.8

Find 62 sgRNAs with CRISPR-Local

Find 72 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAGAATTCTGATTCTATTAG+AGG 0.193327 4.1:+56682816 MS.gene71137:CDS
ATCAACCCTGCATGTGCTTT+TGG 0.232311 4.1:+56682684 MS.gene71137:CDS
TCAACCGGAATACTTGTAAT+TGG 0.260234 4.1:+56682609 MS.gene71137:CDS
TTGGTTGGTGCTGCTGTTGC+TGG 0.268882 4.1:+56682762 MS.gene71137:CDS
TTTGGATCTGCTTCCATTGC+CGG 0.279412 4.1:+56682702 MS.gene71137:CDS
TCAGGAATCAAGCTGTCTAT+TGG 0.284879 4.1:+56682730 MS.gene71137:CDS
GCGGAAGAGATGACAGGATT+TGG 0.318727 4.1:+56682501 MS.gene71137:CDS
CTTCCATTGCCGGAACATTC+AGG 0.324826 4.1:+56682712 MS.gene71137:CDS
TGTCTATTGGGTTGGTCCTT+TGG 0.325188 4.1:+56682743 MS.gene71137:CDS
TTCATTGAACCCAACAAGTT+TGG 0.331866 4.1:+56682119 MS.gene71137:CDS
TAAACCAATTACAAGTATTC+CGG 0.338819 4.1:-56682613 None:intergenic
GGGTTTCAGATGGAACTGTT+AGG 0.373541 4.1:+56682838 MS.gene71137:CDS
TACATTGCATGGGACATATC+TGG 0.375387 4.1:+56682186 MS.gene71137:CDS
CAGGAATCAAGCTGTCTATT+GGG 0.383404 4.1:+56682731 MS.gene71137:CDS
CTTGTAATTGGTTTAATAGC+AGG 0.406060 4.1:+56682621 MS.gene71137:CDS
TTCCTCAAAGTCATCGTTGT+CGG 0.414197 4.1:+56682324 MS.gene71137:CDS
ATTTGGAGCATCAATATTAG+AGG 0.429331 4.1:+56682518 MS.gene71137:CDS
GCACCCACAACCAAACTTGT+TGG 0.436780 4.1:-56682129 None:intergenic
TGCCGACAACGATGACTTTG+AGG 0.450861 4.1:-56682326 None:intergenic
CACCCACAACCAAACTTGTT+GGG 0.455571 4.1:-56682128 None:intergenic
CAACGATGACTTTGAGGAAA+AGG 0.457590 4.1:-56682320 None:intergenic
CGTGGTCAAGTAAGTTCAAC+CGG 0.461078 4.1:+56682594 MS.gene71137:CDS
GGTTTCAGATGGAACTGTTA+GGG 0.464680 4.1:+56682839 MS.gene71137:CDS
TTAGCAGCAGGTCCATTCTC+TGG 0.467463 4.1:+56682654 MS.gene71137:CDS
TGTTACCTTTGCAATGGCTG+TGG 0.474139 4.1:+56682227 MS.gene71137:CDS
ATTCCTGAATGTTCCGGCAA+TGG 0.481196 4.1:-56682715 None:intergenic
TATTGGGTTGGTCCTTTGGT+TGG 0.482215 4.1:+56682747 MS.gene71137:CDS
ACCCAATAAAAGAGAGCAGT+TGG 0.491942 4.1:-56682267 None:intergenic
GTTGGGTTCAATGAAGCGTC+CGG 0.494246 4.1:-56682111 None:intergenic
TTGATTGACCCACCAGAGAA+TGG 0.496422 4.1:-56682666 None:intergenic
AGAATTCTGATTCTATTAGA+GGG 0.496583 4.1:+56682817 MS.gene71137:CDS
GAACCCAACAAGTTTGGTTG+TGG 0.516159 4.1:+56682125 MS.gene71137:CDS
GGAGCAAGTGTGTTAGCAGC+AGG 0.517606 4.1:+56682642 MS.gene71137:CDS
TCCTGCTGTTACCTTTGCAA+TGG 0.517646 4.1:+56682221 MS.gene71137:CDS
CCCAATAAAAGAGAGCAGTT+GGG 0.517838 4.1:-56682266 None:intergenic
TCTATTAGAGGGGTTTCAGA+TGG 0.522207 4.1:+56682828 MS.gene71137:CDS
GTTACCTTTGCAATGGCTGT+GGG 0.523279 4.1:+56682228 MS.gene71137:CDS
AGCTTGATTCCTGAATGTTC+CGG 0.523609 4.1:-56682721 None:intergenic
TGTACACAATTTACGCTGCA+AGG 0.530874 4.1:+56682562 MS.gene71137:CDS
GCAGATCCAAAAGCACATGC+AGG 0.531408 4.1:-56682690 None:intergenic
GCAACAGCAGCACCAACCAA+AGG 0.531682 4.1:-56682759 None:intergenic
CAAAGTCATCGTTGTCGGCA+TGG 0.534604 4.1:+56682329 MS.gene71137:CDS
GCCATTGCAAAGGTAACAGC+AGG 0.535121 4.1:-56682222 None:intergenic
GCAGCAGGTCCATTCTCTGG+TGG 0.535592 4.1:+56682657 MS.gene71137:CDS
AACCCAACAAGTTTGGTTGT+GGG 0.547817 4.1:+56682126 MS.gene71137:CDS
TCTTCCGCAATTGAATATGT+TGG 0.549444 4.1:-56682486 None:intergenic
TTTACGCTGCAAGGGACACT+AGG 0.555338 4.1:+56682571 MS.gene71137:CDS
CAGCAGGTCCATTCTCTGGT+GGG 0.565386 4.1:+56682658 MS.gene71137:CDS
TCAATTGCGGAAGAGATGAC+AGG 0.567654 4.1:+56682495 MS.gene71137:CDS
ATAGAATCAGAATTCTGAGA+AGG 0.587904 4.1:-56682810 None:intergenic
AATCAAGCTGTCTATTGGGT+TGG 0.591734 4.1:+56682735 MS.gene71137:CDS
GAGAGCAAAAGCACTTGCAA+TGG 0.596852 4.1:-56682151 None:intergenic
GTACACAATTTACGCTGCAA+GGG 0.602826 4.1:+56682563 MS.gene71137:CDS
TTTGGAGCATCAATATTAGA+GGG 0.603307 4.1:+56682519 MS.gene71137:CDS
GAATTCTGATTCTATTAGAG+GGG 0.605960 4.1:+56682818 MS.gene71137:CDS
TCCTCCCACAGCCATTGCAA+AGG 0.611836 4.1:-56682232 None:intergenic
CAGATCCAAAAGCACATGCA+GGG 0.625642 4.1:-56682689 None:intergenic
ACCTTTGCAATGGCTGTGGG+AGG 0.626324 4.1:+56682231 MS.gene71137:CDS
ATTGCATGGGACATATCTGG+TGG 0.647153 4.1:+56682189 MS.gene71137:CDS
TGTGCCAACATATTCAATTG+CGG 0.676658 4.1:+56682482 MS.gene71137:CDS
GCTGCAAGGGACACTAGGCG+TGG 0.685457 4.1:+56682576 MS.gene71137:CDS
GAAAAGGCAAGCAATAACAG+AGG 0.705928 4.1:-56682304 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
! AGAATTCTGATTCTATTAGA+GGG + chr4.1:56682817-56682836 MS.gene71137:CDS 25.0%
! CTATAGTACTTATGCAATAA+TGG + chr4.1:56682429-56682448 MS.gene71137:intron 25.0%
! TAAACCAATTACAAGTATTC+CGG - chr4.1:56682616-56682635 None:intergenic 25.0%
! TAGATGTTGAGCATATAAAA+GGG - chr4.1:56682372-56682391 None:intergenic 25.0%
! TTAGATGTTGAGCATATAAA+AGG - chr4.1:56682373-56682392 None:intergenic 25.0%
AGATGTTGAGCATATAAAAG+GGG - chr4.1:56682371-56682390 None:intergenic 30.0%
CAGAATTCTGATTCTATTAG+AGG + chr4.1:56682816-56682835 MS.gene71137:CDS 30.0%
GAATTCTGATTCTATTAGAG+GGG + chr4.1:56682818-56682837 MS.gene71137:CDS 30.0%
! ATAGAATCAGAATTCTGAGA+AGG - chr4.1:56682813-56682832 None:intergenic 30.0%
! ATTTGGAGCATCAATATTAG+AGG + chr4.1:56682518-56682537 MS.gene71137:CDS 30.0%
! CTTGTAATTGGTTTAATAGC+AGG + chr4.1:56682621-56682640 MS.gene71137:CDS 30.0%
! TTCTGTTTTGTACATTGCAT+GGG + chr4.1:56682176-56682195 MS.gene71137:CDS 30.0%
! TTTGGAGCATCAATATTAGA+GGG + chr4.1:56682519-56682538 MS.gene71137:CDS 30.0%
CATATAAAAGGGGTAAGGTA+AGG - chr4.1:56682361-56682380 None:intergenic 35.0%
TCAACCGGAATACTTGTAAT+TGG + chr4.1:56682609-56682628 MS.gene71137:CDS 35.0%
TCTTCCGCAATTGAATATGT+TGG - chr4.1:56682489-56682508 None:intergenic 35.0%
TGTGCCAACATATTCAATTG+CGG + chr4.1:56682482-56682501 MS.gene71137:CDS 35.0%
TTCATTGAACCCAACAAGTT+TGG + chr4.1:56682119-56682138 MS.gene71137:CDS 35.0%
TTGAGCATATAAAAGGGGTA+AGG - chr4.1:56682366-56682385 None:intergenic 35.0%
! CTTCTGTTTTGTACATTGCA+TGG + chr4.1:56682175-56682194 MS.gene71137:CDS 35.0%
AACCCAACAAGTTTGGTTGT+GGG + chr4.1:56682126-56682145 MS.gene71137:CDS 40.0%
AATCAAGCTGTCTATTGGGT+TGG + chr4.1:56682735-56682754 MS.gene71137:CDS 40.0%
ACCCAATAAAAGAGAGCAGT+TGG - chr4.1:56682270-56682289 None:intergenic 40.0%
AGCTTGATTCCTGAATGTTC+CGG - chr4.1:56682724-56682743 None:intergenic 40.0%
CAGGAATCAAGCTGTCTATT+GGG + chr4.1:56682731-56682750 MS.gene71137:CDS 40.0%
CCCAATAAAAGAGAGCAGTT+GGG - chr4.1:56682269-56682288 None:intergenic 40.0%
GAAAAGGCAAGCAATAACAG+AGG - chr4.1:56682307-56682326 None:intergenic 40.0%
GGTTTCAGATGGAACTGTTA+GGG + chr4.1:56682839-56682858 MS.gene71137:CDS 40.0%
GTACACAATTTACGCTGCAA+GGG + chr4.1:56682563-56682582 MS.gene71137:CDS 40.0%
TACATTGCATGGGACATATC+TGG + chr4.1:56682186-56682205 MS.gene71137:CDS 40.0%
TCAGGAATCAAGCTGTCTAT+TGG + chr4.1:56682730-56682749 MS.gene71137:CDS 40.0%
TCTATTAGAGGGGTTTCAGA+TGG + chr4.1:56682828-56682847 MS.gene71137:CDS 40.0%
TGTACACAATTTACGCTGCA+AGG + chr4.1:56682562-56682581 MS.gene71137:CDS 40.0%
TTCCTCAAAGTCATCGTTGT+CGG + chr4.1:56682324-56682343 MS.gene71137:CDS 40.0%
! CAACGATGACTTTGAGGAAA+AGG - chr4.1:56682323-56682342 None:intergenic 40.0%
! CCCAACTGCTCTCTTTTATT+GGG + chr4.1:56682266-56682285 MS.gene71137:CDS 40.0%
! TCCCAACTGCTCTCTTTTAT+TGG + chr4.1:56682265-56682284 MS.gene71137:CDS 40.0%
ATTCCTGAATGTTCCGGCAA+TGG - chr4.1:56682718-56682737 None:intergenic 45.0%
ATTGCATGGGACATATCTGG+TGG + chr4.1:56682189-56682208 MS.gene71137:CDS 45.0%
CGTGGTCAAGTAAGTTCAAC+CGG + chr4.1:56682594-56682613 MS.gene71137:CDS 45.0%
GAACCCAACAAGTTTGGTTG+TGG + chr4.1:56682125-56682144 MS.gene71137:CDS 45.0%
GGGTTTCAGATGGAACTGTT+AGG + chr4.1:56682838-56682857 MS.gene71137:CDS 45.0%
GTTACCTTTGCAATGGCTGT+GGG + chr4.1:56682228-56682247 MS.gene71137:CDS 45.0%
TCAATTGCGGAAGAGATGAC+AGG + chr4.1:56682495-56682514 MS.gene71137:CDS 45.0%
TCCTGCTGTTACCTTTGCAA+TGG + chr4.1:56682221-56682240 MS.gene71137:CDS 45.0%
TGTTACCTTTGCAATGGCTG+TGG + chr4.1:56682227-56682246 MS.gene71137:CDS 45.0%
TTGATTGACCCACCAGAGAA+TGG - chr4.1:56682669-56682688 None:intergenic 45.0%
TTTGGATCTGCTTCCATTGC+CGG + chr4.1:56682702-56682721 MS.gene71137:CDS 45.0%
! ATCAACCCTGCATGTGCTTT+TGG + chr4.1:56682684-56682703 MS.gene71137:CDS 45.0%
! CACCCACAACCAAACTTGTT+GGG - chr4.1:56682131-56682150 None:intergenic 45.0%
! CAGATCCAAAAGCACATGCA+GGG - chr4.1:56682692-56682711 None:intergenic 45.0%
!! GAGAGCAAAAGCACTTGCAA+TGG - chr4.1:56682154-56682173 None:intergenic 45.0%
!! TATTGGGTTGGTCCTTTGGT+TGG + chr4.1:56682747-56682766 MS.gene71137:CDS 45.0%
!! TGTCTATTGGGTTGGTCCTT+TGG + chr4.1:56682743-56682762 MS.gene71137:CDS 45.0%
CAAAGTCATCGTTGTCGGCA+TGG + chr4.1:56682329-56682348 MS.gene71137:CDS 50.0%
CTTCCATTGCCGGAACATTC+AGG + chr4.1:56682712-56682731 MS.gene71137:CDS 50.0%
GCACCCACAACCAAACTTGT+TGG - chr4.1:56682132-56682151 None:intergenic 50.0%
GCCATTGCAAAGGTAACAGC+AGG - chr4.1:56682225-56682244 None:intergenic 50.0%
GCGGAAGAGATGACAGGATT+TGG + chr4.1:56682501-56682520 MS.gene71137:CDS 50.0%
TGCCGACAACGATGACTTTG+AGG - chr4.1:56682329-56682348 None:intergenic 50.0%
TTAGCAGCAGGTCCATTCTC+TGG + chr4.1:56682654-56682673 MS.gene71137:CDS 50.0%
TTTACGCTGCAAGGGACACT+AGG + chr4.1:56682571-56682590 MS.gene71137:CDS 50.0%
! GCAGATCCAAAAGCACATGC+AGG - chr4.1:56682693-56682712 None:intergenic 50.0%
! GTTGGGTTCAATGAAGCGTC+CGG - chr4.1:56682114-56682133 None:intergenic 50.0%
ACCTTTGCAATGGCTGTGGG+AGG + chr4.1:56682231-56682250 MS.gene71137:CDS 55.0%
CAGCAGGTCCATTCTCTGGT+GGG + chr4.1:56682658-56682677 MS.gene71137:CDS 55.0%
GCAACAGCAGCACCAACCAA+AGG - chr4.1:56682762-56682781 None:intergenic 55.0%
GGAGCAAGTGTGTTAGCAGC+AGG + chr4.1:56682642-56682661 MS.gene71137:CDS 55.0%
TCCTCCCACAGCCATTGCAA+AGG - chr4.1:56682235-56682254 None:intergenic 55.0%
!! TTGGTTGGTGCTGCTGTTGC+TGG + chr4.1:56682762-56682781 MS.gene71137:CDS 55.0%
GCAGCAGGTCCATTCTCTGG+TGG + chr4.1:56682657-56682676 MS.gene71137:CDS 60.0%
GCTGCAAGGGACACTAGGCG+TGG + chr4.1:56682576-56682595 MS.gene71137:CDS 65.0%


Chromosome Type Strat End Strand Name
chr4.1 gene 56682108 56682866 56682108 ID=MS.gene71137
chr4.1 mRNA 56682108 56682866 56682108 ID=MS.gene71137.t1;Parent=MS.gene71137
chr4.1 exon 56682108 56682350 56682108 ID=MS.gene71137.t1.exon1;Parent=MS.gene71137.t1
chr4.1 CDS 56682108 56682350 56682108 ID=cds.MS.gene71137.t1;Parent=MS.gene71137.t1
chr4.1 exon 56682480 56682866 56682480 ID=MS.gene71137.t1.exon2;Parent=MS.gene71137.t1
chr4.1 CDS 56682480 56682866 56682480 ID=cds.MS.gene71137.t1;Parent=MS.gene71137.t1
Gene Sequence

>MS.gene71137

ATGCCGGACGCTTCATTGAACCCAACAAGTTTGGTTGTGGGTGCCATTGCAAGTGCTTTTGCTCTCTCTTCTGTTTTGTACATTGCATGGGACATATCTGGTGGACATGTCAATCCTGCTGTTACCTTTGCAATGGCTGTGGGAGGACATATTAGTGTCCCAACTGCTCTCTTTTATTGGGTTGCTCAACTTATTGCCTCTGTTATTGCTTGCCTTTTCCTCAAAGTCATCGTTGTCGGCATGGTATTTTCCTTACCTTACCCCTTTTATATGCTCAACATCTAAATTTCAATTTTATCGAAATTTTGTAGTTGATTGTATCTATAGTACTTATGCAATAATGGTTCATACACTCATGTATATTTTTTGCAGCATGTGCCAACATATTCAATTGCGGAAGAGATGACAGGATTTGGAGCATCAATATTAGAGGGTATACTAACATTTGTGTTAGTGTACACAATTTACGCTGCAAGGGACACTAGGCGTGGTCAAGTAAGTTCAACCGGAATACTTGTAATTGGTTTAATAGCAGGAGCAAGTGTGTTAGCAGCAGGTCCATTCTCTGGTGGGTCAATCAACCCTGCATGTGCTTTTGGATCTGCTTCCATTGCCGGAACATTCAGGAATCAAGCTGTCTATTGGGTTGGTCCTTTGGTTGGTGCTGCTGTTGCTGGTCTTCTTTATGACAATGTTTTGTTTCCTTCTCAGAATTCTGATTCTATTAGAGGGGTTTCAGATGGAACTGTTAGGGTTTAA
Protein sequence

>MS.gene71137.t1

MPDASLNPTSLVVGAIASAFALSSVLYIAWDISGGHVNPAVTFAMAVGGHISVPTALFYWVAQLIASVIACLFLKVIVVGMHVPTYSIAEEMTGFGASILEGILTFVLVYTIYAARDTRRGQVSSTGILVIGLIAGASVLAAGPFSGGSINPACAFGSASIAGTFRNQAVYWVGPLVGAAVAGLLYDNVLFPSQNSDSIRGVSDGTVRV