Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene02488.t1 | XP_003602129.1 | 99.7 | 380 | 1 | 0 | 1 | 380 | 1 | 380 | 8.40E-222 | 779.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene02488.t1 | P12886 | 96.1 | 380 | 15 | 0 | 1 | 380 | 1 | 380 | 2.0e-219 | 762.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene02488.t1 | G7J5M6 | 99.7 | 380 | 1 | 0 | 1 | 380 | 1 | 380 | 6.1e-222 | 779.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene02488 | MS.gene042841 | PPI |
| MS.gene99200 | MS.gene02488 | PPI |
| MS.gene70056 | MS.gene02488 | PPI |
| MS.gene90510 | MS.gene02488 | PPI |
| MS.gene000484 | MS.gene02488 | PPI |
| MS.gene56778 | MS.gene02488 | PPI |
| MS.gene49741 | MS.gene02488 | PPI |
| MS.gene77398 | MS.gene02488 | PPI |
| MS.gene02488 | MS.gene000485 | PPI |
| MS.gene02488 | MS.gene79768 | PPI |
| MS.gene77397 | MS.gene02488 | PPI |
| MS.gene041083 | MS.gene02488 | PPI |
| MS.gene015154 | MS.gene02488 | PPI |
| MS.gene50792 | MS.gene02488 | PPI |
| MS.gene010354 | MS.gene02488 | PPI |
| MS.gene069033 | MS.gene02488 | PPI |
| MS.gene069804 | MS.gene02488 | PPI |
| MS.gene030545 | MS.gene02488 | PPI |
| MS.gene011817 | MS.gene02488 | PPI |
| MS.gene83309 | MS.gene02488 | PPI |
| MS.gene95648 | MS.gene02488 | PPI |
| MS.gene89779 | MS.gene02488 | PPI |
| MS.gene73688 | MS.gene02488 | PPI |
| MS.gene95649 | MS.gene02488 | PPI |
| MS.gene02488 | MS.gene70145 | PPI |
| MS.gene037523 | MS.gene02488 | PPI |
| MS.gene047628 | MS.gene02488 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene02488.t1 | MTR_3g089940 | 99.737 | 380 | 1 | 0 | 1 | 380 | 1 | 380 | 0.0 | 784 |
| MS.gene02488.t1 | MTR_3g089940 | 98.684 | 380 | 5 | 0 | 1 | 380 | 1 | 380 | 0.0 | 777 |
| MS.gene02488.t1 | MTR_3g089977 | 97.895 | 380 | 8 | 0 | 1 | 380 | 1 | 380 | 0.0 | 776 |
| MS.gene02488.t1 | MTR_3g089970 | 97.889 | 379 | 8 | 0 | 2 | 380 | 3 | 381 | 0.0 | 769 |
| MS.gene02488.t1 | MTR_3g089940 | 100.000 | 342 | 0 | 0 | 1 | 342 | 1 | 342 | 0.0 | 708 |
| MS.gene02488.t1 | MTR_3g089940 | 98.830 | 342 | 4 | 0 | 1 | 342 | 1 | 342 | 0.0 | 700 |
| MS.gene02488.t1 | MTR_7g099040 | 59.151 | 377 | 154 | 0 | 2 | 378 | 3 | 379 | 1.24e-170 | 481 |
| MS.gene02488.t1 | MTR_1g069430 | 57.181 | 376 | 161 | 0 | 3 | 378 | 2 | 377 | 1.89e-165 | 468 |
| MS.gene02488.t1 | MTR_6g068930 | 51.451 | 379 | 180 | 2 | 2 | 380 | 3 | 377 | 2.60e-143 | 412 |
| MS.gene02488.t1 | MTR_7g068320 | 49.086 | 383 | 189 | 5 | 1 | 378 | 12 | 393 | 8.90e-128 | 373 |
| MS.gene02488.t1 | MTR_7g068330 | 48.556 | 381 | 191 | 4 | 2 | 378 | 6 | 385 | 3.38e-127 | 371 |
| MS.gene02488.t1 | MTR_3g099460 | 50.132 | 379 | 183 | 4 | 6 | 379 | 13 | 390 | 4.22e-121 | 356 |
| MS.gene02488.t1 | MTR_5g087710 | 45.550 | 382 | 204 | 4 | 2 | 380 | 11 | 391 | 7.77e-121 | 355 |
| MS.gene02488.t1 | MTR_3g099460 | 49.604 | 379 | 178 | 5 | 6 | 379 | 13 | 383 | 5.27e-117 | 345 |
| MS.gene02488.t1 | MTR_3g079180 | 43.158 | 380 | 214 | 2 | 2 | 379 | 6 | 385 | 2.42e-110 | 328 |
| MS.gene02488.t1 | MTR_3g099460 | 49.379 | 322 | 159 | 3 | 61 | 379 | 7 | 327 | 8.42e-97 | 291 |
| MS.gene02488.t1 | MTR_0001s0660 | 39.842 | 379 | 218 | 5 | 3 | 378 | 2 | 373 | 5.05e-90 | 279 |
| MS.gene02488.t1 | MTR_5g045710 | 39.474 | 380 | 222 | 6 | 1 | 378 | 1 | 374 | 1.67e-89 | 275 |
| MS.gene02488.t1 | MTR_3g099460 | 52.650 | 283 | 128 | 4 | 6 | 283 | 13 | 294 | 4.49e-85 | 261 |
| MS.gene02488.t1 | MTR_3g099460 | 51.943 | 283 | 123 | 5 | 6 | 283 | 13 | 287 | 8.35e-81 | 250 |
| MS.gene02488.t1 | MTR_3g079170 | 42.182 | 275 | 137 | 4 | 101 | 370 | 25 | 282 | 2.16e-69 | 220 |
| MS.gene02488.t1 | MTR_5g045710 | 36.735 | 294 | 182 | 3 | 86 | 378 | 1 | 291 | 1.43e-61 | 200 |
| MS.gene02488.t1 | MTR_8g095220 | 31.053 | 380 | 239 | 15 | 12 | 378 | 55 | 424 | 4.43e-44 | 158 |
| MS.gene02488.t1 | MTR_8g095220 | 30.859 | 256 | 163 | 8 | 12 | 258 | 55 | 305 | 1.66e-31 | 121 |
| MS.gene02488.t1 | MTR_6g465010 | 25.405 | 370 | 224 | 13 | 16 | 369 | 3 | 336 | 7.80e-22 | 95.9 |
| MS.gene02488.t1 | MTR_6g466320 | 25.405 | 370 | 224 | 13 | 16 | 369 | 19 | 352 | 8.74e-22 | 95.9 |
| MS.gene02488.t1 | MTR_6g465010 | 25.405 | 370 | 224 | 13 | 16 | 369 | 19 | 352 | 8.74e-22 | 95.9 |
| MS.gene02488.t1 | MTR_5g031190 | 23.913 | 368 | 237 | 14 | 12 | 370 | 11 | 344 | 1.86e-13 | 71.2 |
| MS.gene02488.t1 | MTR_5g031390 | 24.484 | 339 | 218 | 9 | 37 | 370 | 39 | 344 | 8.66e-13 | 69.3 |
| MS.gene02488.t1 | MTR_4g115300 | 25.369 | 339 | 215 | 9 | 37 | 370 | 39 | 344 | 9.93e-13 | 69.3 |
| MS.gene02488.t1 | MTR_5g031230 | 23.894 | 339 | 220 | 10 | 37 | 370 | 39 | 344 | 1.07e-11 | 65.9 |
| MS.gene02488.t1 | MTR_5g031210 | 24.702 | 336 | 221 | 10 | 37 | 370 | 39 | 344 | 4.43e-11 | 64.3 |
| MS.gene02488.t1 | MTR_1g025950 | 22.599 | 354 | 207 | 10 | 37 | 370 | 38 | 344 | 4.57e-11 | 63.9 |
| MS.gene02488.t1 | MTR_5g031250 | 22.552 | 337 | 227 | 10 | 37 | 370 | 39 | 344 | 6.42e-11 | 63.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene02488.t1 | AT1G77120 | 84.840 | 376 | 57 | 0 | 3 | 378 | 2 | 377 | 0.0 | 675 |
| MS.gene02488.t1 | AT5G43940 | 58.824 | 374 | 154 | 0 | 3 | 376 | 2 | 375 | 1.96e-168 | 476 |
| MS.gene02488.t1 | AT5G43940 | 56.736 | 386 | 155 | 1 | 3 | 376 | 2 | 387 | 2.93e-164 | 465 |
| MS.gene02488.t1 | AT5G24760 | 52.419 | 372 | 173 | 2 | 7 | 378 | 12 | 379 | 6.34e-147 | 421 |
| MS.gene02488.t1 | AT1G32780 | 50.256 | 390 | 184 | 2 | 1 | 380 | 1 | 390 | 3.95e-142 | 409 |
| MS.gene02488.t1 | AT1G64710 | 50.000 | 378 | 186 | 2 | 4 | 378 | 3 | 380 | 4.23e-142 | 409 |
| MS.gene02488.t1 | AT5G24760 | 51.130 | 354 | 169 | 2 | 25 | 378 | 1 | 350 | 8.05e-136 | 392 |
| MS.gene02488.t1 | AT5G24760 | 51.130 | 354 | 169 | 2 | 25 | 378 | 1 | 350 | 8.05e-136 | 392 |
| MS.gene02488.t1 | AT1G64710 | 48.459 | 357 | 181 | 2 | 25 | 378 | 1 | 357 | 7.71e-130 | 377 |
| MS.gene02488.t1 | AT5G42250 | 46.917 | 373 | 195 | 3 | 9 | 378 | 17 | 389 | 9.52e-120 | 352 |
| MS.gene02488.t1 | AT1G22440 | 49.096 | 387 | 184 | 6 | 2 | 380 | 5 | 386 | 2.06e-119 | 351 |
| MS.gene02488.t1 | AT1G22430 | 47.258 | 383 | 199 | 3 | 1 | 380 | 6 | 388 | 3.90e-117 | 345 |
| MS.gene02488.t1 | AT1G22430 | 47.258 | 383 | 199 | 3 | 1 | 380 | 6 | 388 | 3.90e-117 | 345 |
| MS.gene02488.t1 | AT4G22110 | 47.244 | 381 | 192 | 4 | 6 | 380 | 12 | 389 | 2.52e-114 | 338 |
| MS.gene02488.t1 | AT4G22110 | 47.244 | 381 | 192 | 4 | 6 | 380 | 12 | 389 | 2.52e-114 | 338 |
| MS.gene02488.t1 | AT1G64710 | 47.386 | 306 | 159 | 1 | 75 | 378 | 6 | 311 | 3.28e-107 | 317 |
| MS.gene02488.t1 | AT5G24760 | 47.368 | 266 | 139 | 1 | 113 | 378 | 1 | 265 | 1.26e-92 | 279 |
| MS.gene02488.t1 | AT1G22430 | 51.049 | 286 | 137 | 3 | 1 | 283 | 6 | 291 | 6.81e-91 | 276 |
| MS.gene02488.t1 | AT1G22430 | 52.610 | 249 | 116 | 2 | 1 | 247 | 6 | 254 | 2.51e-82 | 253 |
| MS.gene02488.t1 | AT1G22430 | 52.610 | 249 | 116 | 2 | 1 | 247 | 6 | 254 | 2.51e-82 | 253 |
| MS.gene02488.t1 | AT4G22110 | 52.439 | 246 | 109 | 3 | 6 | 246 | 12 | 254 | 1.86e-77 | 240 |
| MS.gene02488.t1 | AT5G63620 | 30.027 | 373 | 239 | 13 | 12 | 372 | 57 | 419 | 1.24e-39 | 146 |
| MS.gene02488.t1 | AT5G63620 | 29.380 | 371 | 244 | 11 | 12 | 372 | 57 | 419 | 3.57e-39 | 145 |
| MS.gene02488.t1 | AT5G63620 | 29.719 | 249 | 162 | 7 | 12 | 251 | 57 | 301 | 7.89e-28 | 112 |
| MS.gene02488.t1 | AT5G51970 | 23.711 | 388 | 242 | 14 | 1 | 371 | 6 | 356 | 8.37e-19 | 87.4 |
| MS.gene02488.t1 | AT5G51970 | 23.711 | 388 | 242 | 14 | 1 | 371 | 6 | 356 | 8.37e-19 | 87.4 |
| MS.gene02488.t1 | AT1G72680 | 24.665 | 373 | 246 | 9 | 1 | 370 | 1 | 341 | 2.58e-14 | 73.9 |
| MS.gene02488.t1 | AT4G37990 | 24.444 | 315 | 207 | 8 | 37 | 346 | 35 | 323 | 2.66e-12 | 67.8 |
Find 108 sgRNAs with CRISPR-Local
Find 233 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGTTCATCTGTTGCTATCTT+TGG | 0.236969 | 3.4:-82460340 | MS.gene02488:CDS |
| ACGGGTTTGTCATGATCTTT+TGG | 0.242014 | 3.4:+82460009 | None:intergenic |
| GTCATACTGATGTTTACTTC+TGG | 0.242164 | 3.4:-82461792 | MS.gene02488:CDS |
| GCTTTGTTAATCTCTGAAAA+TGG | 0.242441 | 3.4:+82459367 | None:intergenic |
| GTTTCTAGCCGATTTGAATT+AGG | 0.268437 | 3.4:-82460153 | MS.gene02488:intron |
| TGGTCTCAGCTAAGAAGTTT+GGG | 0.291376 | 3.4:-82460050 | MS.gene02488:intron |
| CTTTCATTCAACAAATTCAT+AGG | 0.292860 | 3.4:+82459616 | None:intergenic |
| GGGTTTGTAGTTACCATAAA+AGG | 0.296012 | 3.4:+82459579 | None:intergenic |
| TTGGTCTCAGCTAAGAAGTT+TGG | 0.297490 | 3.4:-82460051 | MS.gene02488:intron |
| TCAGTCAAGATTCTCTATTA+AGG | 0.310729 | 3.4:-82460906 | MS.gene02488:CDS |
| GCAACATGTGTGATCTTCTT+AGG | 0.311495 | 3.4:-82460964 | MS.gene02488:CDS |
| TGGGGTGTTGCTGTACTTGT+TGG | 0.336473 | 3.4:-82459673 | MS.gene02488:CDS |
| ATGTACTTCTCTACAACATT+AGG | 0.344846 | 3.4:+82459544 | None:intergenic |
| TTGAATGCATCATCTTTGTT+TGG | 0.346611 | 3.4:+82459646 | None:intergenic |
| GCTGAAGGAGCAAGGATATC+TGG | 0.347450 | 3.4:-82460204 | MS.gene02488:CDS |
| GTTGAATGAAAGGACTCTTA+AGG | 0.347627 | 3.4:-82459605 | MS.gene02488:CDS |
| ATCTTTGGACTTGGAGCTGT+TGG | 0.351212 | 3.4:-82460325 | MS.gene02488:CDS |
| ACTTTGTCAAGTGGTGCATC+AGG | 0.352356 | 3.4:+82460800 | None:intergenic |
| TTGAATGAAAGGACTCTTAA+GGG | 0.375052 | 3.4:-82459604 | MS.gene02488:CDS |
| GCAACAGATGAACCGGGTTT+CGG | 0.376365 | 3.4:+82460349 | None:intergenic |
| TATCTGCAGCTGCGGTTGCA+TGG | 0.381586 | 3.4:-82461906 | MS.gene02488:intron |
| GCTGCGGTTGCATGGGAGGC+GGG | 0.386440 | 3.4:-82461898 | MS.gene02488:CDS |
| TCATACTGATGTTTACTTCT+GGG | 0.391708 | 3.4:-82461791 | MS.gene02488:CDS |
| GGCGGGGAAGCCGCTGGTGA+TGG | 0.393519 | 3.4:-82461881 | MS.gene02488:CDS |
| TGTTGAACTAACCTGTTGTA+CGG | 0.403420 | 3.4:+82459990 | None:intergenic |
| AGCTGCGGTTGCATGGGAGG+CGG | 0.413137 | 3.4:-82461899 | MS.gene02488:CDS |
| AAAGATAGCAACAGATGAAC+CGG | 0.416086 | 3.4:+82460342 | None:intergenic |
| TCTGTTGCTATCTTTGGACT+TGG | 0.419387 | 3.4:-82460334 | MS.gene02488:CDS |
| CAGTCAAGATTCTCTATTAA+GGG | 0.430904 | 3.4:-82460905 | MS.gene02488:CDS |
| TCATGACAAACCCGTACAAC+AGG | 0.433809 | 3.4:-82460001 | MS.gene02488:intron |
| GATCGTGCTGTTGAATGTAC+TGG | 0.436537 | 3.4:-82459831 | MS.gene02488:CDS |
| ATCTGCAGCTGCGGTTGCAT+GGG | 0.438978 | 3.4:-82461905 | MS.gene02488:intron |
| TTGTAGAGAAGTACATGAAA+GGG | 0.451043 | 3.4:-82459537 | MS.gene02488:CDS |
| TCTGGTGCATCAAGAATCAT+TGG | 0.451804 | 3.4:-82460186 | MS.gene02488:CDS |
| GTAATTGCTGAAATGACAAA+TGG | 0.467912 | 3.4:-82459861 | MS.gene02488:CDS |
| TTTCGGCTTAGCAACATTGA+TGG | 0.472708 | 3.4:+82460366 | None:intergenic |
| CCACACTCCCCTGTGAATAC+AGG | 0.474104 | 3.4:+82461016 | None:intergenic |
| CCTGTATTCACAGGGGAGTG+TGG | 0.474817 | 3.4:-82461016 | MS.gene02488:CDS |
| CATGCCCTGCCTGTATTCAC+AGG | 0.480140 | 3.4:-82461025 | MS.gene02488:CDS |
| GCCGCTGGTGATGGAGGAAG+TGG | 0.480972 | 3.4:-82461872 | MS.gene02488:CDS |
| ACAGGCAGGGCATGATCCCC+TGG | 0.483648 | 3.4:+82461034 | None:intergenic |
| CTGTATTCACAGGGGAGTGT+GGG | 0.483700 | 3.4:-82461015 | MS.gene02488:CDS |
| TTCTTAGGATCAACACTGAC+AGG | 0.485136 | 3.4:-82460949 | MS.gene02488:CDS |
| TGCAGCTGCGGTTGCATGGG+AGG | 0.488595 | 3.4:-82461902 | MS.gene02488:intron |
| ATGGGAGGCGGGGAAGCCGC+TGG | 0.490732 | 3.4:-82461887 | MS.gene02488:CDS |
| CTATGAATTTGTTGAATGAA+AGG | 0.494743 | 3.4:-82459615 | MS.gene02488:CDS |
| CATTCGGATGATGCATCTGA+TGG | 0.504913 | 3.4:+82459318 | None:intergenic |
| ACATTCGAAAGCTGAGATCA+TGG | 0.510392 | 3.4:+82459797 | None:intergenic |
| TTTCATTCAACAAATTCATA+GGG | 0.514951 | 3.4:+82459617 | None:intergenic |
| TAAGTCATGTCGAGTACAGC+TGG | 0.515258 | 3.4:-82463006 | None:intergenic |
| GTTGAACTAACCTGTTGTAC+GGG | 0.516621 | 3.4:+82459991 | None:intergenic |
| AACATTAGGAAGATCAGTGC+GGG | 0.517924 | 3.4:+82459558 | None:intergenic |
| TACAAATTTCAGGCTGCTGA+AGG | 0.521714 | 3.4:-82460219 | MS.gene02488:intron |
| GCATTGTACCTAATTCAAAT+CGG | 0.523873 | 3.4:+82460145 | None:intergenic |
| CTGCGGTTGCATGGGAGGCG+GGG | 0.533283 | 3.4:-82461897 | MS.gene02488:CDS |
| GGTGATGGAGGAAGTGGAGG+TGG | 0.533501 | 3.4:-82461866 | MS.gene02488:CDS |
| GGGGAAGCCGCTGGTGATGG+AGG | 0.533706 | 3.4:-82461878 | MS.gene02488:CDS |
| GTTGTAGAGAAGTACATGAA+AGG | 0.537144 | 3.4:-82459538 | MS.gene02488:CDS |
| GAATATACTGTTGTTCATGC+TGG | 0.538058 | 3.4:-82460842 | MS.gene02488:CDS |
| CTCAGCTGTGGAATATGCAC+AGG | 0.542001 | 3.4:-82460770 | MS.gene02488:intron |
| TGTTTACTTCTGGGAAGCTA+AGG | 0.543162 | 3.4:-82461782 | MS.gene02488:intron |
| AGACGGACTTCACCGGCTTG+TGG | 0.546092 | 3.4:+82461838 | None:intergenic |
| GTAAACATCAGTATGACAAA+GGG | 0.554993 | 3.4:+82461798 | None:intergenic |
| GTGCCGACGAAATGATGAAT+GGG | 0.557629 | 3.4:+82460878 | None:intergenic |
| AAAGTTTGTATTCTCAGCTG+TGG | 0.560671 | 3.4:-82460782 | MS.gene02488:CDS |
| TATCTTGAGACGGACTTCAC+CGG | 0.564597 | 3.4:+82461831 | None:intergenic |
| AGTAAACATCAGTATGACAA+AGG | 0.570922 | 3.4:+82461797 | None:intergenic |
| TGTGCCGACGAAATGATGAA+TGG | 0.574064 | 3.4:+82460877 | None:intergenic |
| CGAAAGCTGAGATCATGGCC+TGG | 0.579058 | 3.4:+82459802 | None:intergenic |
| ACTCCCCTGTGAATACAGGC+AGG | 0.579461 | 3.4:+82461020 | None:intergenic |
| CATGATGTTGATCAGGATTG+TGG | 0.581178 | 3.4:-82461089 | MS.gene02488:intron |
| TTCAGGCTGCTGAAGGAGCA+AGG | 0.586031 | 3.4:-82460212 | MS.gene02488:intron |
| CATCAGATGCATCATCCGAA+TGG | 0.586918 | 3.4:-82459317 | MS.gene02488:CDS |
| CAGCCCATTCATCATTTCGT+CGG | 0.590024 | 3.4:-82460881 | MS.gene02488:CDS |
| TGTATTCACAGGGGAGTGTG+GGG | 0.591767 | 3.4:-82461014 | MS.gene02488:CDS |
| CTTTGTCAAGTGGTGCATCA+GGG | 0.593942 | 3.4:+82460801 | None:intergenic |
| GATTGTGGAGAGCGTAGGCG+AGG | 0.594735 | 3.4:-82461074 | MS.gene02488:CDS |
| AGAATACAAACTTTGTCAAG+TGG | 0.596408 | 3.4:+82460791 | None:intergenic |
| TGAATGTACTGGGAGCATCC+AGG | 0.596660 | 3.4:-82459820 | MS.gene02488:CDS |
| GAGGTGGCGCCACCACAAGC+CGG | 0.599089 | 3.4:-82461850 | MS.gene02488:CDS |
| AATGTTGCTAAGCCGAAACC+CGG | 0.606869 | 3.4:-82460361 | MS.gene02488:CDS |
| ATCGTGCTGTTGAATGTACT+GGG | 0.609310 | 3.4:-82459830 | MS.gene02488:CDS |
| GTGTGACACATCTAAAACCA+GGG | 0.609545 | 3.4:-82461051 | MS.gene02488:CDS |
| CGGACTTCACCGGCTTGTGG+TGG | 0.618100 | 3.4:+82461841 | None:intergenic |
| CTGTCCACATTGTAAGTCAG+AGG | 0.618115 | 3.4:-82460990 | MS.gene02488:CDS |
| CAGATGCATCATCCGAATGG+AGG | 0.625117 | 3.4:-82459314 | MS.gene02488:CDS |
| TGTAGAGAAGTACATGAAAG+GGG | 0.626357 | 3.4:-82459536 | MS.gene02488:intron |
| AACATCAGTATGACAAAGGG+AGG | 0.627239 | 3.4:+82461801 | None:intergenic |
| GCTGGTGATGGAGGAAGTGG+AGG | 0.628022 | 3.4:-82461869 | MS.gene02488:CDS |
| GGTGTGACACATCTAAAACC+AGG | 0.629311 | 3.4:-82461052 | MS.gene02488:CDS |
| GGTCAAGTCATCAAATGCAA+AGG | 0.634446 | 3.4:-82462985 | MS.gene02488:intron |
| CTCTCCTCTGACTTACAATG+TGG | 0.634714 | 3.4:+82460986 | None:intergenic |
| ATGCCCTGCCTGTATTCACA+GGG | 0.640094 | 3.4:-82461024 | MS.gene02488:CDS |
| GGTCTCAGCTAAGAAGTTTG+GGG | 0.642019 | 3.4:-82460049 | MS.gene02488:intron |
| AGGTGAAGAGTATCTTGAGA+CGG | 0.642729 | 3.4:+82461821 | None:intergenic |
| ATCAGGATTGTGGAGAGCGT+AGG | 0.642832 | 3.4:-82461079 | MS.gene02488:intron |
| TCTTAGGATCAACACTGACA+GGG | 0.645688 | 3.4:-82460948 | MS.gene02488:CDS |
| ATTGTGGAGAGCGTAGGCGA+GGG | 0.662603 | 3.4:-82461073 | MS.gene02488:CDS |
| AAGATAGCAACAGATGAACC+GGG | 0.667433 | 3.4:+82460343 | None:intergenic |
| ATTGCTGAAATGACAAATGG+AGG | 0.669847 | 3.4:-82459858 | MS.gene02488:CDS |
| CTCCCCTGTGAATACAGGCA+GGG | 0.674123 | 3.4:+82461021 | None:intergenic |
| CTTAGGATCAACACTGACAG+GGG | 0.684115 | 3.4:-82460947 | MS.gene02488:CDS |
| TCCACTTCCTCCATCACCAG+CGG | 0.690568 | 3.4:+82461871 | None:intergenic |
| CAACATTAGGAAGATCAGTG+CGG | 0.707517 | 3.4:+82459557 | None:intergenic |
| TGAAATGACAAATGGAGGTG+TGG | 0.709912 | 3.4:-82459853 | MS.gene02488:CDS |
| ACATTAGGAAGATCAGTGCG+GGG | 0.718262 | 3.4:+82459559 | None:intergenic |
| TGTGACACATCTAAAACCAG+GGG | 0.732525 | 3.4:-82461050 | MS.gene02488:CDS |
| TGCCCTGCCTGTATTCACAG+GGG | 0.737931 | 3.4:-82461023 | MS.gene02488:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATAAAAACAATCAAAATTTA+CGG | - | chr3.4:82459678-82459697 | MS.gene02488:CDS | 10.0% |
| !!! | CATTTTATAACTTTAATTTT+TGG | + | chr3.4:82460068-82460087 | None:intergenic | 10.0% |
| !!! | TAAACATAGTAATTAATTTT+TGG | + | chr3.4:82460099-82460118 | None:intergenic | 10.0% |
| !!! | TAAATTTTGATTGTTTTTAT+TGG | + | chr3.4:82459678-82459697 | None:intergenic | 10.0% |
| !! | AAAATTAAGTCATATAACTT+AGG | + | chr3.4:82462228-82462247 | None:intergenic | 15.0% |
| !! | TAAAAACAATCAAAATTTAC+GGG | - | chr3.4:82459679-82459698 | MS.gene02488:CDS | 15.0% |
| !! | TGAGATATTAATATATAACT+AGG | - | chr3.4:82461864-82461883 | MS.gene02488:CDS | 15.0% |
| !!! | AATAAGTTTAAAACAACTTA+TGG | + | chr3.4:82461660-82461679 | None:intergenic | 15.0% |
| !!! | AATTAATTCTTGTTTTTTGA+GGG | - | chr3.4:82460904-82460923 | MS.gene02488:CDS | 15.0% |
| !!! | ACATTTTACAACTTAATTTT+TGG | + | chr3.4:82460038-82460057 | None:intergenic | 15.0% |
| !!! | ATGAATTTTATTCATAATGT+TGG | - | chr3.4:82461197-82461216 | MS.gene02488:intron | 15.0% |
| !!! | CTTAATTTTTGAAATATTCT+TGG | - | chr3.4:82462239-82462258 | MS.gene02488:intron | 15.0% |
| !!! | TAATTAATTCTTGTTTTTTG+AGG | - | chr3.4:82460903-82460922 | MS.gene02488:CDS | 15.0% |
| !!! | TGAGTTTAATTTTAGATTAA+AGG | - | chr3.4:82460679-82460698 | MS.gene02488:intron | 15.0% |
| !! | AAAAACAATCAAAATTTACG+GGG | - | chr3.4:82459680-82459699 | MS.gene02488:intron | 20.0% |
| !! | AATACATGTAATTATTGCAT+TGG | - | chr3.4:82459764-82459783 | MS.gene02488:intron | 20.0% |
| !! | ATAATCGTCTTTAAATCAAA+TGG | + | chr3.4:82459454-82459473 | None:intergenic | 20.0% |
| !! | ATTTGATTGTATATGAAAAG+GGG | - | chr3.4:82460621-82460640 | MS.gene02488:intron | 20.0% |
| !! | CTCAATCTTAAATCATTTAA+TGG | + | chr3.4:82462200-82462219 | None:intergenic | 20.0% |
| !! | GATTCAATAATACAAATTTC+AGG | - | chr3.4:82462080-82462099 | MS.gene02488:intron | 20.0% |
| !! | GATTTGATTGTATATGAAAA+GGG | - | chr3.4:82460620-82460639 | MS.gene02488:intron | 20.0% |
| !! | TATATTAATATCTCAATGCA+AGG | + | chr3.4:82461859-82461878 | None:intergenic | 20.0% |
| !! | TGATTTGATTGTATATGAAA+AGG | - | chr3.4:82460619-82460638 | MS.gene02488:intron | 20.0% |
| !! | TTTCATTCAACAAATTCATA+GGG | + | chr3.4:82462695-82462714 | None:intergenic | 20.0% |
| !!! | AAATTGTGTTTTGCTTTTTA+TGG | - | chr3.4:82460295-82460314 | MS.gene02488:intron | 20.0% |
| !!! | ACTTCATTTTTCTTACTATA+TGG | - | chr3.4:82461120-82461139 | MS.gene02488:intron | 20.0% |
| !!! | ATTAATTCTTGTTTTTTGAG+GGG | - | chr3.4:82460905-82460924 | MS.gene02488:CDS | 20.0% |
| !!! | ATTAGTTGAATTGACTTTAA+TGG | - | chr3.4:82459484-82459503 | MS.gene02488:intron | 20.0% |
| !!! | CATTAAATGATTTAAGATTG+AGG | - | chr3.4:82462198-82462217 | MS.gene02488:intron | 20.0% |
| !!! | CTTATTTTTATAATCTCTCT+AGG | - | chr3.4:82461674-82461693 | MS.gene02488:intron | 20.0% |
| !!! | TTTCTTTTTTTTTGAACAAG+TGG | - | chr3.4:82459997-82460016 | MS.gene02488:intron | 20.0% |
| !!! | TTTTTCACTACTATAAATGA+AGG | - | chr3.4:82460133-82460152 | MS.gene02488:intron | 20.0% |
| ! | ACAAGACCCAAAATTTATAA+AGG | - | chr3.4:82459865-82459884 | MS.gene02488:intron | 25.0% |
| ! | ACTATGTTTAGAAAATCACT+CGG | - | chr3.4:82460109-82460128 | MS.gene02488:intron | 25.0% |
| ! | AGAAATTATAAAGCTTACTG+AGG | - | chr3.4:82462584-82462603 | MS.gene02488:intron | 25.0% |
| ! | AGGATATATTATACACTACT+TGG | + | chr3.4:82461839-82461858 | None:intergenic | 25.0% |
| ! | CAATAAATCAATCATATCTG+TGG | + | chr3.4:82461034-82461053 | None:intergenic | 25.0% |
| ! | CCAAAATTTATAAAGGAAGA+GGG | - | chr3.4:82459872-82459891 | MS.gene02488:intron | 25.0% |
| ! | CGTAAGTACTTAAATGATAA+GGG | - | chr3.4:82461777-82461796 | MS.gene02488:intron | 25.0% |
| ! | CTTTCATTCAACAAATTCAT+AGG | + | chr3.4:82462696-82462715 | None:intergenic | 25.0% |
| ! | TAGATTAAAGGAAATTAAGC+TGG | - | chr3.4:82460691-82460710 | MS.gene02488:intron | 25.0% |
| ! | TATAAAAGTAACATACAGCA+AGG | + | chr3.4:82462010-82462029 | None:intergenic | 25.0% |
| ! | TATGAATTGAATCCTTTACA+AGG | + | chr3.4:82460933-82460952 | None:intergenic | 25.0% |
| ! | TTTGATTGTATATGAAAAGG+GGG | - | chr3.4:82460622-82460641 | MS.gene02488:intron | 25.0% |
| ! | TTTGTAACAAAGAGAAAAAG+AGG | + | chr3.4:82460265-82460284 | None:intergenic | 25.0% |
| !! | AGAATATTCTAGAAACGAAA+AGG | - | chr3.4:82459899-82459918 | MS.gene02488:intron | 25.0% |
| !! | CCTCTTCCTTTATAAATTTT+GGG | + | chr3.4:82459874-82459893 | None:intergenic | 25.0% |
| !! | TATTTGGAGTAGTATACAAT+TGG | - | chr3.4:82459639-82459658 | MS.gene02488:CDS | 25.0% |
| !!! | ATTGGAGTCTTTTTTAATCT+GGG | - | chr3.4:82460716-82460735 | MS.gene02488:intron | 25.0% |
| !!! | CTATGAATTTGTTGAATGAA+AGG | - | chr3.4:82462694-82462713 | MS.gene02488:intron | 25.0% |
| !!! | TTTGCTTTTTATGGATCTAA+GGG | - | chr3.4:82460304-82460323 | MS.gene02488:intron | 25.0% |
| !!! | TTTTGCTTTTTATGGATCTA+AGG | - | chr3.4:82460303-82460322 | MS.gene02488:intron | 25.0% |
| ACCCTAAGAAAAACAAATCA+AGG | + | chr3.4:82462616-82462635 | None:intergenic | 30.0% | |
| AGAAAGAAACACAATCCAAA+TGG | + | chr3.4:82460331-82460350 | None:intergenic | 30.0% | |
| AGAATACAAACTTTGTCAAG+TGG | + | chr3.4:82461521-82461540 | None:intergenic | 30.0% | |
| AGCTGCAGATATAAAATGAT+CGG | + | chr3.4:82460394-82460413 | None:intergenic | 30.0% | |
| AGTAAACATCAGTATGACAA+AGG | + | chr3.4:82460515-82460534 | None:intergenic | 30.0% | |
| ATGCAAAAGTGACACATATT+TGG | - | chr3.4:82459623-82459642 | MS.gene02488:CDS | 30.0% | |
| ATGTACTTCTCTACAACATT+AGG | + | chr3.4:82462768-82462787 | None:intergenic | 30.0% | |
| CAGTCAAGATTCTCTATTAA+GGG | - | chr3.4:82461404-82461423 | MS.gene02488:intron | 30.0% | |
| CCATGAATGCAAATTGAATT+AGG | + | chr3.4:82461905-82461924 | None:intergenic | 30.0% | |
| CCCAAAATTTATAAAGGAAG+AGG | - | chr3.4:82459871-82459890 | MS.gene02488:intron | 30.0% | |
| CCTAATTCAATTTGCATTCA+TGG | - | chr3.4:82461902-82461921 | MS.gene02488:intron | 30.0% | |
| GCATTGTACCTAATTCAAAT+CGG | + | chr3.4:82462167-82462186 | None:intergenic | 30.0% | |
| GCGTAAGTACTTAAATGATA+AGG | - | chr3.4:82461776-82461795 | MS.gene02488:intron | 30.0% | |
| GTAAACATCAGTATGACAAA+GGG | + | chr3.4:82460514-82460533 | None:intergenic | 30.0% | |
| GTAATTGCTGAAATGACAAA+TGG | - | chr3.4:82462448-82462467 | MS.gene02488:intron | 30.0% | |
| TATTCTTTCCTTCTGTTTCA+GGG | - | chr3.4:82460785-82460804 | MS.gene02488:CDS | 30.0% | |
| TCAGTCAAGATTCTCTATTA+AGG | - | chr3.4:82461403-82461422 | MS.gene02488:intron | 30.0% | |
| TCATACTGATGTTTACTTCT+GGG | - | chr3.4:82460518-82460537 | MS.gene02488:intron | 30.0% | |
| TTATTCTTTCCTTCTGTTTC+AGG | - | chr3.4:82460784-82460803 | MS.gene02488:CDS | 30.0% | |
| TTGAATGAAAGGACTCTTAA+GGG | - | chr3.4:82462705-82462724 | MS.gene02488:intron | 30.0% | |
| TTGAATGCATCATCTTTGTT+TGG | + | chr3.4:82462666-82462685 | None:intergenic | 30.0% | |
| ! | CCCTCTTCCTTTATAAATTT+TGG | + | chr3.4:82459875-82459894 | None:intergenic | 30.0% |
| ! | GCTTTGTTAATCTCTGAAAA+TGG | + | chr3.4:82462945-82462964 | None:intergenic | 30.0% |
| ! | TTGTAGAGAAGTACATGAAA+GGG | - | chr3.4:82462772-82462791 | MS.gene02488:intron | 30.0% |
| !! | ATTTGTTTTTCTTAGGGTTG+GGG | - | chr3.4:82462618-82462637 | MS.gene02488:intron | 30.0% |
| !! | GATTTGTTTTTCTTAGGGTT+GGG | - | chr3.4:82462617-82462636 | MS.gene02488:intron | 30.0% |
| !! | TGTTGATAATTTGATACTGC+AGG | - | chr3.4:82462884-82462903 | MS.gene02488:intron | 30.0% |
| !!! | AGCCTTGATTTGTTTTTCTT+AGG | - | chr3.4:82462611-82462630 | MS.gene02488:intron | 30.0% |
| !!! | ATTTTGTTTTGCATACATCG+TGG | + | chr3.4:82462540-82462559 | None:intergenic | 30.0% |
| !!! | GATTGGAGTCTTTTTTAATC+TGG | - | chr3.4:82460715-82460734 | MS.gene02488:intron | 30.0% |
| !!! | GCCTTGATTTGTTTTTCTTA+GGG | - | chr3.4:82462612-82462631 | MS.gene02488:intron | 30.0% |
| !!! | TGATTTGTTTTTCTTAGGGT+TGG | - | chr3.4:82462616-82462635 | MS.gene02488:intron | 30.0% |
| AAAGATAGCAACAGATGAAC+CGG | + | chr3.4:82461970-82461989 | None:intergenic | 35.0% | |
| AAAGTTTGTATTCTCAGCTG+TGG | - | chr3.4:82461527-82461546 | MS.gene02488:intron | 35.0% | |
| AAGGAAATTAAGCTGGTGAT+TGG | - | chr3.4:82460698-82460717 | MS.gene02488:intron | 35.0% | |
| ACAAAGAGAAAAAGAGGACA+TGG | + | chr3.4:82460259-82460278 | None:intergenic | 35.0% | |
| AGAAAGCAATAAATGTTGCC+TGG | - | chr3.4:82459560-82459579 | MS.gene02488:CDS | 35.0% | |
| ATTGCTGAAATGACAAATGG+AGG | - | chr3.4:82462451-82462470 | MS.gene02488:intron | 35.0% | |
| CAATTTGCATTCATGGTTGT+AGG | - | chr3.4:82461909-82461928 | MS.gene02488:intron | 35.0% | |
| CCAAAAATACGAGGAAACAA+TGG | + | chr3.4:82460818-82460837 | None:intergenic | 35.0% | |
| GAATATACTGTTGTTCATGC+TGG | - | chr3.4:82461467-82461486 | MS.gene02488:intron | 35.0% | |
| GGGTTTGTAGTTACCATAAA+AGG | + | chr3.4:82462733-82462752 | None:intergenic | 35.0% | |
| GGTATGATCACTGGATTTAT+TGG | - | chr3.4:82459345-82459364 | MS.gene02488:CDS | 35.0% | |
| GTCATACTGATGTTTACTTC+TGG | - | chr3.4:82460517-82460536 | MS.gene02488:intron | 35.0% | |
| GTTGAATGAAAGGACTCTTA+AGG | - | chr3.4:82462704-82462723 | MS.gene02488:intron | 35.0% | |
| TGTTGAACTAACCTGTTGTA+CGG | + | chr3.4:82462322-82462341 | None:intergenic | 35.0% | |
| TTAACTATGTCGAACACTGT+TGG | - | chr3.4:82460210-82460229 | MS.gene02488:CDS | 35.0% | |
| ! | AAATGCAAAGGTATGATCAC+TGG | - | chr3.4:82459336-82459355 | MS.gene02488:CDS | 35.0% |
| ! | ATGATTATGAGTGAGTTGAG+TGG | + | chr3.4:82460180-82460199 | None:intergenic | 35.0% |
| ! | CCATTGTTTCCTCGTATTTT+TGG | - | chr3.4:82460815-82460834 | MS.gene02488:CDS | 35.0% |
| ! | GTTGTAGAGAAGTACATGAA+AGG | - | chr3.4:82462771-82462790 | MS.gene02488:intron | 35.0% |
| ! | TCATTTTATATCTGCAGCTG+CGG | - | chr3.4:82460395-82460414 | MS.gene02488:intron | 35.0% |
| ! | TGATTATGAGTGAGTTGAGT+GGG | + | chr3.4:82460179-82460198 | None:intergenic | 35.0% |
| ! | TGTAGAGAAGTACATGAAAG+GGG | - | chr3.4:82462773-82462792 | MS.gene02488:intron | 35.0% |
| !! | GCTGTCACTTTAAAATAACC+AGG | + | chr3.4:82459581-82459600 | None:intergenic | 35.0% |
| !! | GCTTTTGATTACATGCTGAA+AGG | - | chr3.4:82462963-82462982 | MS.gene02488:intron | 35.0% |
| !! | GTTTCTAGCCGATTTGAATT+AGG | - | chr3.4:82462156-82462175 | MS.gene02488:intron | 35.0% |
| !!! | ACTCTTAAGGGTACCTTTTA+TGG | - | chr3.4:82462717-82462736 | MS.gene02488:intron | 35.0% |
| AACACAAACACACACACTCA+TGG | + | chr3.4:82462033-82462052 | None:intergenic | 40.0% | |
| AACATCAGTATGACAAAGGG+AGG | + | chr3.4:82460511-82460530 | None:intergenic | 40.0% | |
| AACATTAGGAAGATCAGTGC+GGG | + | chr3.4:82462754-82462773 | None:intergenic | 40.0% | |
| AAGATAGCAACAGATGAACC+GGG | + | chr3.4:82461969-82461988 | None:intergenic | 40.0% | |
| AAGCCACAAATTATACCACC+TGG | + | chr3.4:82459929-82459948 | None:intergenic | 40.0% | |
| ACATTCGAAAGCTGAGATCA+TGG | + | chr3.4:82462515-82462534 | None:intergenic | 40.0% | |
| ATGGCACACTTAATCTGAGA+CGG | + | chr3.4:82459435-82459454 | None:intergenic | 40.0% | |
| ATGTTGGCATGATGTTGATC+AGG | - | chr3.4:82461213-82461232 | MS.gene02488:intron | 40.0% | |
| CAACATTAGGAAGATCAGTG+CGG | + | chr3.4:82462755-82462774 | None:intergenic | 40.0% | |
| CATGATGTTGATCAGGATTG+TGG | - | chr3.4:82461220-82461239 | MS.gene02488:intron | 40.0% | |
| GAACCAGGTGGTATAATTTG+TGG | - | chr3.4:82459923-82459942 | MS.gene02488:intron | 40.0% | |
| GCAACATGTGTGATCTTCTT+AGG | - | chr3.4:82461345-82461364 | MS.gene02488:intron | 40.0% | |
| GCTTCATGACCAAAAATACG+AGG | + | chr3.4:82460827-82460846 | None:intergenic | 40.0% | |
| GGTCAAGTCATCAAATGCAA+AGG | - | chr3.4:82459324-82459343 | MS.gene02488:CDS | 40.0% | |
| GGTTCATCTGTTGCTATCTT+TGG | - | chr3.4:82461969-82461988 | MS.gene02488:intron | 40.0% | |
| GTGGTAAAGTCAAATCCCAA+AGG | - | chr3.4:82459950-82459969 | MS.gene02488:intron | 40.0% | |
| GTTGAACTAACCTGTTGTAC+GGG | + | chr3.4:82462321-82462340 | None:intergenic | 40.0% | |
| TAATTTGATACTGCAGGAGC+TGG | - | chr3.4:82462890-82462909 | MS.gene02488:intron | 40.0% | |
| TACAAATTTCAGGCTGCTGA+AGG | - | chr3.4:82462090-82462109 | MS.gene02488:intron | 40.0% | |
| TAGAAACGAAAAGGAGAACC+AGG | - | chr3.4:82459908-82459927 | MS.gene02488:intron | 40.0% | |
| TATGGATCTAAGGGTCCATT+TGG | - | chr3.4:82460313-82460332 | MS.gene02488:intron | 40.0% | |
| TCTGGTGCATCAAGAATCAT+TGG | - | chr3.4:82462123-82462142 | MS.gene02488:intron | 40.0% | |
| TCTGTTGCTATCTTTGGACT+TGG | - | chr3.4:82461975-82461994 | MS.gene02488:intron | 40.0% | |
| TCTTAGGATCAACACTGACA+GGG | - | chr3.4:82461361-82461380 | MS.gene02488:intron | 40.0% | |
| TGAAATGACAAATGGAGGTG+TGG | - | chr3.4:82462456-82462475 | MS.gene02488:intron | 40.0% | |
| TGGTCTCAGCTAAGAAGTTT+GGG | - | chr3.4:82462259-82462278 | MS.gene02488:intron | 40.0% | |
| TTCTTAGGATCAACACTGAC+AGG | - | chr3.4:82461360-82461379 | MS.gene02488:intron | 40.0% | |
| TTGGTCTCAGCTAAGAAGTT+TGG | - | chr3.4:82462258-82462277 | MS.gene02488:intron | 40.0% | |
| TTTCGGCTTAGCAACATTGA+TGG | + | chr3.4:82461946-82461965 | None:intergenic | 40.0% | |
| ! | ACGGGTTTGTCATGATCTTT+TGG | + | chr3.4:82462303-82462322 | None:intergenic | 40.0% |
| ! | AGGTGGTATAATTTGTGGCT+TGG | - | chr3.4:82459928-82459947 | MS.gene02488:intron | 40.0% |
| ! | ATCGTGCTGTTGAATGTACT+GGG | - | chr3.4:82462479-82462498 | MS.gene02488:intron | 40.0% |
| ! | CGGGTTTGTCATGATCTTTT+GGG | + | chr3.4:82462302-82462321 | None:intergenic | 40.0% |
| ! | GATTATGAGTGAGTTGAGTG+GGG | + | chr3.4:82460178-82460197 | None:intergenic | 40.0% |
| ! | GTGTGACACATCTAAAACCA+GGG | - | chr3.4:82461258-82461277 | MS.gene02488:intron | 40.0% |
| ! | TGGTATAATTTGTGGCTTGG+TGG | - | chr3.4:82459931-82459950 | MS.gene02488:intron | 40.0% |
| ! | TGTGACACATCTAAAACCAG+GGG | - | chr3.4:82461259-82461278 | MS.gene02488:intron | 40.0% |
| ! | TGTTTACTTCTGGGAAGCTA+AGG | - | chr3.4:82460527-82460546 | MS.gene02488:intron | 40.0% |
| !! | AGGTGAAGAGTATCTTGAGA+CGG | + | chr3.4:82460491-82460510 | None:intergenic | 40.0% |
| !! | AGTATGCTTAAAGAGTGTCC+CGG | - | chr3.4:82459830-82459849 | MS.gene02488:CDS | 40.0% |
| !! | TTTTGAGGGGTTCCTTGTAA+AGG | - | chr3.4:82460918-82460937 | MS.gene02488:CDS | 40.0% |
| !! | TTTTTGGTCATGAAGCTGGA+GGG | - | chr3.4:82460831-82460850 | MS.gene02488:CDS | 40.0% |
| !!! | ATTTTTGGTCATGAAGCTGG+AGG | - | chr3.4:82460830-82460849 | MS.gene02488:CDS | 40.0% |
| !!! | CGTATTTTTGGTCATGAAGC+TGG | - | chr3.4:82460827-82460846 | MS.gene02488:CDS | 40.0% |
| !!! | GCTGTGTCATTTTGTGTGTA+AGG | - | chr3.4:82462426-82462445 | MS.gene02488:intron | 40.0% |
| AAACGAAAAGGAGAACCAGG+TGG | - | chr3.4:82459911-82459930 | MS.gene02488:intron | 45.0% | |
| AAATGTTAACGAGTGTCCCC+GGG | - | chr3.4:82459703-82459722 | MS.gene02488:intron | 45.0% | |
| AATGTTGCTAAGCCGAAACC+CGG | - | chr3.4:82461948-82461967 | MS.gene02488:intron | 45.0% | |
| ACATTAGGAAGATCAGTGCG+GGG | + | chr3.4:82462753-82462772 | None:intergenic | 45.0% | |
| ACTTTGTCAAGTGGTGCATC+AGG | + | chr3.4:82461512-82461531 | None:intergenic | 45.0% | |
| ATCTTTGGACTTGGAGCTGT+TGG | - | chr3.4:82461984-82462003 | MS.gene02488:intron | 45.0% | |
| CAGCCCATTCATCATTTCGT+CGG | - | chr3.4:82461428-82461447 | MS.gene02488:intron | 45.0% | |
| CATCAGATGCATCATCCGAA+TGG | - | chr3.4:82462992-82463011 | MS.gene02488:CDS | 45.0% | |
| CATTCGGATGATGCATCTGA+TGG | + | chr3.4:82462994-82463013 | None:intergenic | 45.0% | |
| CTCTCCTCTGACTTACAATG+TGG | + | chr3.4:82461326-82461345 | None:intergenic | 45.0% | |
| CTGTCCACATTGTAAGTCAG+AGG | - | chr3.4:82461319-82461338 | MS.gene02488:intron | 45.0% | |
| CTTAGGATCAACACTGACAG+GGG | - | chr3.4:82461362-82461381 | MS.gene02488:intron | 45.0% | |
| CTTTGTCAAGTGGTGCATCA+GGG | + | chr3.4:82461511-82461530 | None:intergenic | 45.0% | |
| GAAATGTTAACGAGTGTCCC+CGG | - | chr3.4:82459702-82459721 | MS.gene02488:intron | 45.0% | |
| GAATATGCACAGGTATGAGC+TGG | - | chr3.4:82461549-82461568 | MS.gene02488:intron | 45.0% | |
| GAGTTTGACCCTGAAACAGA+AGG | + | chr3.4:82460796-82460815 | None:intergenic | 45.0% | |
| GCATTCATGGTTGTAGGTCT+TGG | - | chr3.4:82461915-82461934 | MS.gene02488:intron | 45.0% | |
| GGTCTCAGCTAAGAAGTTTG+GGG | - | chr3.4:82462260-82462279 | MS.gene02488:intron | 45.0% | |
| TATGTCGAACACTGTTGGTC+AGG | - | chr3.4:82460215-82460234 | MS.gene02488:intron | 45.0% | |
| TCATGACAAACCCGTACAAC+AGG | - | chr3.4:82462308-82462327 | MS.gene02488:intron | 45.0% | |
| TCTTGTTAACGAGTGTCTCC+GGG | + | chr3.4:82459851-82459870 | None:intergenic | 45.0% | |
| TGAAGGTCACTGACAGTAGT+TGG | - | chr3.4:82460150-82460169 | MS.gene02488:intron | 45.0% | |
| ! | ATTTTACCAGCTGCGCCTTT+GGG | + | chr3.4:82459968-82459987 | None:intergenic | 45.0% |
| ! | GATCGTGCTGTTGAATGTAC+TGG | - | chr3.4:82462478-82462497 | MS.gene02488:intron | 45.0% |
| ! | GGTGTGACACATCTAAAACC+AGG | - | chr3.4:82461257-82461276 | MS.gene02488:intron | 45.0% |
| ! | GTCTTGTTAACGAGTGTCTC+CGG | + | chr3.4:82459852-82459871 | None:intergenic | 45.0% |
| ! | GTGCCGACGAAATGATGAAT+GGG | + | chr3.4:82461434-82461453 | None:intergenic | 45.0% |
| ! | TATCTTGAGACGGACTTCAC+CGG | + | chr3.4:82460481-82460500 | None:intergenic | 45.0% |
| ! | TGTGCCGACGAAATGATGAA+TGG | + | chr3.4:82461435-82461454 | None:intergenic | 45.0% |
| !! | ATGTTCCTTAAAGAGTGCCC+CGG | + | chr3.4:82459724-82459743 | None:intergenic | 45.0% |
| !!! | TTTATTTTTATATTTCATTA+TGG | - | chr3.4:82461742-82461761 | MS.gene02488:intron | 5.0% |
| AATGTTAACGAGTGTCCCCG+GGG | - | chr3.4:82459704-82459723 | MS.gene02488:intron | 50.0% | |
| ATGCCCTGCCTGTATTCACA+GGG | - | chr3.4:82461285-82461304 | MS.gene02488:intron | 50.0% | |
| CAGATGCATCATCCGAATGG+AGG | - | chr3.4:82462995-82463014 | MS.gene02488:CDS | 50.0% | |
| CTCAGCTGTGGAATATGCAC+AGG | - | chr3.4:82461539-82461558 | MS.gene02488:intron | 50.0% | |
| GCAACAGATGAACCGGGTTT+CGG | + | chr3.4:82461963-82461982 | None:intergenic | 50.0% | |
| GCTGAAGGAGCAAGGATATC+TGG | - | chr3.4:82462105-82462124 | MS.gene02488:intron | 50.0% | |
| TGCACAGGTATGAGCTGGTT+TGG | - | chr3.4:82461554-82461573 | MS.gene02488:intron | 50.0% | |
| ! | ATCAGGATTGTGGAGAGCGT+AGG | - | chr3.4:82461230-82461249 | MS.gene02488:intron | 50.0% |
| ! | CAAAGGCGCAGCTGGTAAAA+TGG | - | chr3.4:82459967-82459986 | MS.gene02488:intron | 50.0% |
| ! | CATTTTACCAGCTGCGCCTT+TGG | + | chr3.4:82459969-82459988 | None:intergenic | 50.0% |
| ! | CTGTATTCACAGGGGAGTGT+GGG | - | chr3.4:82461294-82461313 | MS.gene02488:intron | 50.0% |
| ! | GCACAGGTATGAGCTGGTTT+GGG | - | chr3.4:82461555-82461574 | MS.gene02488:intron | 50.0% |
| ! | TGTATTCACAGGGGAGTGTG+GGG | - | chr3.4:82461295-82461314 | MS.gene02488:intron | 50.0% |
| !! | TGAATGTACTGGGAGCATCC+AGG | - | chr3.4:82462489-82462508 | MS.gene02488:intron | 50.0% |
| !! | TGGGGTGTTGCTGTACTTGT+TGG | - | chr3.4:82462636-82462655 | MS.gene02488:intron | 50.0% |
| !! | TGTTCCTTAAAGAGTGCCCC+GGG | + | chr3.4:82459723-82459742 | None:intergenic | 50.0% |
| ACTCCCCTGTGAATACAGGC+AGG | + | chr3.4:82461292-82461311 | None:intergenic | 55.0% | |
| ATCTGCAGCTGCGGTTGCAT+GGG | - | chr3.4:82460404-82460423 | MS.gene02488:intron | 55.0% | |
| CATGCCCTGCCTGTATTCAC+AGG | - | chr3.4:82461284-82461303 | MS.gene02488:intron | 55.0% | |
| CCACACTCCCCTGTGAATAC+AGG | + | chr3.4:82461296-82461315 | None:intergenic | 55.0% | |
| CCTGTATTCACAGGGGAGTG+TGG | - | chr3.4:82461293-82461312 | MS.gene02488:intron | 55.0% | |
| CGAAAGCTGAGATCATGGCC+TGG | + | chr3.4:82462510-82462529 | None:intergenic | 55.0% | |
| CTCCCCTGTGAATACAGGCA+GGG | + | chr3.4:82461291-82461310 | None:intergenic | 55.0% | |
| GGTCAGGTCATCAAGTGCAG+AGG | - | chr3.4:82460231-82460250 | MS.gene02488:intron | 55.0% | |
| TATCTGCAGCTGCGGTTGCA+TGG | - | chr3.4:82460403-82460422 | MS.gene02488:intron | 55.0% | |
| TCCACTTCCTCCATCACCAG+CGG | + | chr3.4:82460441-82460460 | None:intergenic | 55.0% | |
| TGCCCTGCCTGTATTCACAG+GGG | - | chr3.4:82461286-82461305 | MS.gene02488:intron | 55.0% | |
| TTCAGGCTGCTGAAGGAGCA+AGG | - | chr3.4:82462097-82462116 | MS.gene02488:intron | 55.0% | |
| ! | ATTGTGGAGAGCGTAGGCGA+GGG | - | chr3.4:82461236-82461255 | MS.gene02488:intron | 55.0% |
| ! | TCAAATCCCAAAGGCGCAGC+TGG | - | chr3.4:82459959-82459978 | MS.gene02488:intron | 55.0% |
| !! | GTTCCTTAAAGAGTGCCCCG+GGG | + | chr3.4:82459722-82459741 | None:intergenic | 55.0% |
| ! | GATTGTGGAGAGCGTAGGCG+AGG | - | chr3.4:82461235-82461254 | MS.gene02488:intron | 60.0% |
| ! | TGTCCCCGGGGCACTCTTTA+AGG | - | chr3.4:82459716-82459735 | MS.gene02488:intron | 60.0% |
| !! | AGACGGACTTCACCGGCTTG+TGG | + | chr3.4:82460474-82460493 | None:intergenic | 60.0% |
| !! | GCTGGTGATGGAGGAAGTGG+AGG | - | chr3.4:82460440-82460459 | MS.gene02488:intron | 60.0% |
| !! | GGTGATGGAGGAAGTGGAGG+TGG | - | chr3.4:82460443-82460462 | MS.gene02488:intron | 60.0% |
| ACAGGCAGGGCATGATCCCC+TGG | + | chr3.4:82461278-82461297 | None:intergenic | 65.0% | |
| AGCTGCGGTTGCATGGGAGG+CGG | - | chr3.4:82460410-82460429 | MS.gene02488:intron | 65.0% | |
| TGCAGCTGCGGTTGCATGGG+AGG | - | chr3.4:82460407-82460426 | MS.gene02488:intron | 65.0% | |
| !! | CGGACTTCACCGGCTTGTGG+TGG | + | chr3.4:82460471-82460490 | None:intergenic | 65.0% |
| !! | GCCGCTGGTGATGGAGGAAG+TGG | - | chr3.4:82460437-82460456 | MS.gene02488:intron | 65.0% |
| CTGCGGTTGCATGGGAGGCG+GGG | - | chr3.4:82460412-82460431 | MS.gene02488:intron | 70.0% | |
| GAGGTGGCGCCACCACAAGC+CGG | - | chr3.4:82460459-82460478 | MS.gene02488:intron | 70.0% | |
| GCTGCGGTTGCATGGGAGGC+GGG | - | chr3.4:82460411-82460430 | MS.gene02488:intron | 70.0% | |
| !! | GGGGAAGCCGCTGGTGATGG+AGG | - | chr3.4:82460431-82460450 | MS.gene02488:intron | 70.0% |
| ATGGGAGGCGGGGAAGCCGC+TGG | - | chr3.4:82460422-82460441 | MS.gene02488:intron | 75.0% | |
| GGCGGGGAAGCCGCTGGTGA+TGG | - | chr3.4:82460428-82460447 | MS.gene02488:intron | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.4 | gene | 82459309 | 82463022 | 82459309 | ID=MS.gene02488 |
| chr3.4 | mRNA | 82459309 | 82463022 | 82459309 | ID=MS.gene02488.t1;Parent=MS.gene02488 |
| chr3.4 | exon | 82462986 | 82463022 | 82462986 | ID=MS.gene02488.t1.exon1;Parent=MS.gene02488.t1 |
| chr3.4 | CDS | 82462986 | 82463022 | 82462986 | ID=cds.MS.gene02488.t1;Parent=MS.gene02488.t1 |
| chr3.4 | exon | 82461783 | 82461919 | 82461783 | ID=MS.gene02488.t1.exon2;Parent=MS.gene02488.t1 |
| chr3.4 | CDS | 82461783 | 82461919 | 82461783 | ID=cds.MS.gene02488.t1;Parent=MS.gene02488.t1 |
| chr3.4 | exon | 82461479 | 82461525 | 82461479 | ID=MS.gene02488.t1.exon3;Parent=MS.gene02488.t1 |
| chr3.4 | CDS | 82461479 | 82461525 | 82461479 | ID=cds.MS.gene02488.t1;Parent=MS.gene02488.t1 |
| chr3.4 | exon | 82460771 | 82461096 | 82460771 | ID=MS.gene02488.t1.exon4;Parent=MS.gene02488.t1 |
| chr3.4 | CDS | 82460771 | 82461096 | 82460771 | ID=cds.MS.gene02488.t1;Parent=MS.gene02488.t1 |
| chr3.4 | exon | 82460318 | 82460400 | 82460318 | ID=MS.gene02488.t1.exon5;Parent=MS.gene02488.t1 |
| chr3.4 | CDS | 82460318 | 82460400 | 82460318 | ID=cds.MS.gene02488.t1;Parent=MS.gene02488.t1 |
| chr3.4 | exon | 82460154 | 82460229 | 82460154 | ID=MS.gene02488.t1.exon6;Parent=MS.gene02488.t1 |
| chr3.4 | CDS | 82460154 | 82460229 | 82460154 | ID=cds.MS.gene02488.t1;Parent=MS.gene02488.t1 |
| chr3.4 | exon | 82460002 | 82460063 | 82460002 | ID=MS.gene02488.t1.exon7;Parent=MS.gene02488.t1 |
| chr3.4 | CDS | 82460002 | 82460063 | 82460002 | ID=cds.MS.gene02488.t1;Parent=MS.gene02488.t1 |
| chr3.4 | exon | 82459788 | 82459883 | 82459788 | ID=MS.gene02488.t1.exon8;Parent=MS.gene02488.t1 |
| chr3.4 | CDS | 82459788 | 82459883 | 82459788 | ID=cds.MS.gene02488.t1;Parent=MS.gene02488.t1 |
| chr3.4 | exon | 82459537 | 82459698 | 82459537 | ID=MS.gene02488.t1.exon9;Parent=MS.gene02488.t1 |
| chr3.4 | CDS | 82459537 | 82459698 | 82459537 | ID=cds.MS.gene02488.t1;Parent=MS.gene02488.t1 |
| chr3.4 | exon | 82459309 | 82459425 | 82459309 | ID=MS.gene02488.t1.exon10;Parent=MS.gene02488.t1 |
| chr3.4 | CDS | 82459309 | 82459425 | 82459309 | ID=cds.MS.gene02488.t1;Parent=MS.gene02488.t1 |
| Gene Sequence |
| Protein sequence |
