Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene02655.t1 | XP_013461377.1 | 98.4 | 380 | 6 | 0 | 1 | 380 | 1 | 380 | 2.10E-220 | 774.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene02655.t1 | P12886 | 95.5 | 380 | 17 | 0 | 1 | 380 | 1 | 380 | 8.3e-218 | 757.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene02655.t1 | A0A072V0U2 | 98.4 | 380 | 6 | 0 | 1 | 380 | 1 | 380 | 1.5e-220 | 774.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene02655 | MS.gene77398 | PPI |
| MS.gene02655 | MS.gene010354 | PPI |
| MS.gene02655 | MS.gene000484 | PPI |
| MS.gene037523 | MS.gene02655 | PPI |
| MS.gene02655 | MS.gene99200 | PPI |
| MS.gene02655 | MS.gene83309 | PPI |
| MS.gene02655 | MS.gene77397 | PPI |
| MS.gene02655 | MS.gene90510 | PPI |
| MS.gene02655 | MS.gene047628 | PPI |
| MS.gene02655 | MS.gene042841 | PPI |
| MS.gene02655 | MS.gene95649 | PPI |
| MS.gene02655 | MS.gene70145 | PPI |
| MS.gene02655 | MS.gene069804 | PPI |
| MS.gene02655 | MS.gene000485 | PPI |
| MS.gene02655 | MS.gene70056 | PPI |
| MS.gene02655 | MS.gene89779 | PPI |
| MS.gene02655 | MS.gene041083 | PPI |
| MS.gene02655 | MS.gene73688 | PPI |
| MS.gene02655 | MS.gene49741 | PPI |
| MS.gene015154 | MS.gene02655 | PPI |
| MS.gene02655 | MS.gene011817 | PPI |
| MS.gene50792 | MS.gene02655 | PPI |
| MS.gene069033 | MS.gene02655 | PPI |
| MS.gene030545 | MS.gene02655 | PPI |
| MS.gene02655 | MS.gene95648 | PPI |
| MS.gene02655 | MS.gene79768 | PPI |
| MS.gene02655 | MS.gene56778 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene02655.t1 | MTR_3g089977 | 98.421 | 380 | 6 | 0 | 1 | 380 | 1 | 380 | 0.0 | 778 |
| MS.gene02655.t1 | MTR_3g089940 | 97.632 | 380 | 9 | 0 | 1 | 380 | 1 | 380 | 0.0 | 771 |
| MS.gene02655.t1 | MTR_3g089940 | 97.632 | 380 | 9 | 0 | 1 | 380 | 1 | 380 | 0.0 | 770 |
| MS.gene02655.t1 | MTR_3g089970 | 96.063 | 381 | 14 | 1 | 1 | 380 | 1 | 381 | 0.0 | 755 |
| MS.gene02655.t1 | MTR_3g089940 | 97.661 | 342 | 8 | 0 | 1 | 342 | 1 | 342 | 0.0 | 696 |
| MS.gene02655.t1 | MTR_3g089940 | 97.661 | 342 | 8 | 0 | 1 | 342 | 1 | 342 | 0.0 | 694 |
| MS.gene02655.t1 | MTR_7g099040 | 58.355 | 377 | 157 | 0 | 2 | 378 | 3 | 379 | 1.74e-170 | 481 |
| MS.gene02655.t1 | MTR_1g069430 | 56.533 | 375 | 163 | 0 | 4 | 378 | 3 | 377 | 1.80e-164 | 466 |
| MS.gene02655.t1 | MTR_6g068930 | 50.928 | 377 | 181 | 2 | 2 | 378 | 3 | 375 | 2.81e-142 | 409 |
| MS.gene02655.t1 | MTR_7g068320 | 48.564 | 383 | 191 | 5 | 1 | 378 | 12 | 393 | 2.73e-127 | 372 |
| MS.gene02655.t1 | MTR_7g068330 | 48.556 | 381 | 191 | 4 | 2 | 378 | 6 | 385 | 5.96e-127 | 370 |
| MS.gene02655.t1 | MTR_3g099460 | 49.735 | 378 | 184 | 4 | 6 | 378 | 13 | 389 | 1.11e-120 | 355 |
| MS.gene02655.t1 | MTR_5g087710 | 45.187 | 374 | 203 | 2 | 7 | 378 | 16 | 389 | 1.17e-119 | 352 |
| MS.gene02655.t1 | MTR_3g099460 | 49.206 | 378 | 179 | 5 | 6 | 378 | 13 | 382 | 1.92e-116 | 343 |
| MS.gene02655.t1 | MTR_3g079180 | 42.744 | 379 | 215 | 2 | 2 | 378 | 6 | 384 | 9.83e-110 | 327 |
| MS.gene02655.t1 | MTR_3g099460 | 49.221 | 321 | 159 | 3 | 61 | 378 | 7 | 326 | 9.91e-97 | 291 |
| MS.gene02655.t1 | MTR_0001s0660 | 39.523 | 377 | 218 | 5 | 5 | 378 | 4 | 373 | 6.83e-90 | 278 |
| MS.gene02655.t1 | MTR_5g045710 | 39.474 | 380 | 222 | 6 | 1 | 378 | 1 | 374 | 7.02e-90 | 275 |
| MS.gene02655.t1 | MTR_3g099460 | 51.943 | 283 | 130 | 4 | 6 | 283 | 13 | 294 | 7.00e-85 | 261 |
| MS.gene02655.t1 | MTR_3g099460 | 51.237 | 283 | 125 | 5 | 6 | 283 | 13 | 287 | 1.05e-80 | 250 |
| MS.gene02655.t1 | MTR_3g079170 | 41.818 | 275 | 138 | 4 | 101 | 370 | 25 | 282 | 4.75e-69 | 219 |
| MS.gene02655.t1 | MTR_5g045710 | 37.075 | 294 | 181 | 3 | 86 | 378 | 1 | 291 | 2.21e-62 | 202 |
| MS.gene02655.t1 | MTR_8g095220 | 31.579 | 380 | 237 | 15 | 12 | 378 | 55 | 424 | 7.20e-45 | 160 |
| MS.gene02655.t1 | MTR_8g095220 | 31.250 | 256 | 162 | 8 | 12 | 258 | 55 | 305 | 1.27e-31 | 122 |
| MS.gene02655.t1 | MTR_6g465010 | 25.405 | 370 | 224 | 13 | 16 | 369 | 3 | 336 | 5.44e-22 | 96.3 |
| MS.gene02655.t1 | MTR_6g466320 | 25.405 | 370 | 224 | 13 | 16 | 369 | 19 | 352 | 5.87e-22 | 96.3 |
| MS.gene02655.t1 | MTR_6g465010 | 25.405 | 370 | 224 | 13 | 16 | 369 | 19 | 352 | 5.87e-22 | 96.3 |
| MS.gene02655.t1 | MTR_5g031190 | 23.810 | 378 | 244 | 15 | 12 | 379 | 11 | 354 | 8.73e-14 | 72.4 |
| MS.gene02655.t1 | MTR_4g115300 | 26.000 | 350 | 218 | 11 | 37 | 379 | 39 | 354 | 3.34e-13 | 70.5 |
| MS.gene02655.t1 | MTR_5g031390 | 24.642 | 349 | 224 | 10 | 37 | 379 | 39 | 354 | 4.08e-13 | 70.5 |
| MS.gene02655.t1 | MTR_5g031230 | 23.782 | 349 | 227 | 11 | 37 | 379 | 39 | 354 | 7.13e-12 | 66.6 |
| MS.gene02655.t1 | MTR_5g031210 | 24.566 | 346 | 228 | 11 | 37 | 379 | 39 | 354 | 1.42e-11 | 65.5 |
| MS.gene02655.t1 | MTR_5g031360 | 22.767 | 347 | 233 | 9 | 37 | 379 | 41 | 356 | 4.55e-11 | 63.9 |
| MS.gene02655.t1 | MTR_5g031250 | 22.478 | 347 | 234 | 11 | 37 | 379 | 39 | 354 | 5.31e-11 | 63.9 |
| MS.gene02655.t1 | MTR_5g031180 | 23.262 | 374 | 251 | 13 | 12 | 379 | 11 | 354 | 6.19e-11 | 63.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene02655.t1 | AT1G77120 | 84.350 | 377 | 59 | 0 | 3 | 379 | 2 | 378 | 0.0 | 675 |
| MS.gene02655.t1 | AT5G43940 | 58.713 | 373 | 154 | 0 | 4 | 376 | 3 | 375 | 1.63e-168 | 476 |
| MS.gene02655.t1 | AT5G43940 | 56.623 | 385 | 155 | 1 | 4 | 376 | 3 | 387 | 2.55e-164 | 466 |
| MS.gene02655.t1 | AT5G24760 | 52.151 | 372 | 174 | 2 | 7 | 378 | 12 | 379 | 5.26e-147 | 421 |
| MS.gene02655.t1 | AT1G64710 | 49.206 | 378 | 189 | 2 | 4 | 378 | 3 | 380 | 3.83e-141 | 406 |
| MS.gene02655.t1 | AT1G32780 | 49.487 | 390 | 187 | 2 | 1 | 380 | 1 | 390 | 5.02e-141 | 407 |
| MS.gene02655.t1 | AT5G24760 | 51.130 | 354 | 169 | 2 | 25 | 378 | 1 | 350 | 3.67e-136 | 392 |
| MS.gene02655.t1 | AT5G24760 | 51.130 | 354 | 169 | 2 | 25 | 378 | 1 | 350 | 3.67e-136 | 392 |
| MS.gene02655.t1 | AT1G64710 | 48.179 | 357 | 182 | 2 | 25 | 378 | 1 | 357 | 1.77e-129 | 376 |
| MS.gene02655.t1 | AT5G42250 | 46.524 | 374 | 197 | 3 | 9 | 379 | 17 | 390 | 4.16e-120 | 353 |
| MS.gene02655.t1 | AT1G22440 | 48.831 | 385 | 184 | 6 | 2 | 378 | 5 | 384 | 3.23e-118 | 348 |
| MS.gene02655.t1 | AT1G22430 | 46.719 | 381 | 200 | 3 | 1 | 378 | 6 | 386 | 7.85e-116 | 342 |
| MS.gene02655.t1 | AT1G22430 | 46.719 | 381 | 200 | 3 | 1 | 378 | 6 | 386 | 7.85e-116 | 342 |
| MS.gene02655.t1 | AT4G22110 | 46.719 | 381 | 194 | 4 | 6 | 380 | 12 | 389 | 1.26e-113 | 337 |
| MS.gene02655.t1 | AT4G22110 | 46.719 | 381 | 194 | 4 | 6 | 380 | 12 | 389 | 1.26e-113 | 337 |
| MS.gene02655.t1 | AT1G64710 | 47.059 | 306 | 160 | 1 | 75 | 378 | 6 | 311 | 3.99e-107 | 317 |
| MS.gene02655.t1 | AT5G24760 | 47.368 | 266 | 139 | 1 | 113 | 378 | 1 | 265 | 2.40e-92 | 278 |
| MS.gene02655.t1 | AT1G22430 | 50.000 | 286 | 140 | 3 | 1 | 283 | 6 | 291 | 8.43e-90 | 273 |
| MS.gene02655.t1 | AT1G22430 | 51.406 | 249 | 119 | 2 | 1 | 247 | 6 | 254 | 2.99e-81 | 251 |
| MS.gene02655.t1 | AT1G22430 | 51.406 | 249 | 119 | 2 | 1 | 247 | 6 | 254 | 2.99e-81 | 251 |
| MS.gene02655.t1 | AT4G22110 | 51.626 | 246 | 111 | 3 | 6 | 246 | 12 | 254 | 6.58e-77 | 239 |
| MS.gene02655.t1 | AT5G63620 | 31.016 | 374 | 234 | 14 | 12 | 372 | 57 | 419 | 1.45e-40 | 149 |
| MS.gene02655.t1 | AT5G63620 | 30.376 | 372 | 239 | 12 | 12 | 372 | 57 | 419 | 4.27e-40 | 147 |
| MS.gene02655.t1 | AT5G63620 | 30.800 | 250 | 158 | 8 | 12 | 251 | 57 | 301 | 5.43e-28 | 112 |
| MS.gene02655.t1 | AT5G51970 | 23.454 | 388 | 243 | 14 | 1 | 371 | 6 | 356 | 1.59e-17 | 83.6 |
| MS.gene02655.t1 | AT5G51970 | 23.454 | 388 | 243 | 14 | 1 | 371 | 6 | 356 | 1.59e-17 | 83.6 |
| MS.gene02655.t1 | AT1G72680 | 25.223 | 337 | 217 | 9 | 37 | 370 | 37 | 341 | 1.41e-13 | 71.6 |
| MS.gene02655.t1 | AT4G37990 | 24.444 | 315 | 207 | 8 | 37 | 346 | 35 | 323 | 4.40e-12 | 67.4 |
Find 120 sgRNAs with CRISPR-Local
Find 190 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAGGTTTGTCATGATCTTTC+GGG | 0.232230 | 3.1:-72413963 | None:intergenic |
| GGTTCATCTGTTGCTATCTT+TGG | 0.236969 | 3.1:+72413580 | MS.gene02655:CDS |
| GCTTTGTTAATCTCTGAAAA+TGG | 0.242441 | 3.1:-72414609 | None:intergenic |
| GTTTCCAGCCGATATGAATT+AGG | 0.257110 | 3.1:+72413802 | MS.gene02655:CDS |
| GTCACACTGATGTTTACTTC+TGG | 0.274790 | 3.1:+72412700 | MS.gene02655:CDS |
| TTGTTGGCAGCTAAGAAGTT+TGG | 0.287505 | 3.1:+72413922 | MS.gene02655:intron |
| CCATTGTTTCCTCGTATATT+TGG | 0.294860 | 3.1:+72412942 | MS.gene02655:CDS |
| ACAGGTTTGTCATGATCTTT+CGG | 0.301321 | 3.1:-72413964 | None:intergenic |
| GCAACAGATGAACCGGGTTT+TGG | 0.302998 | 3.1:-72413571 | None:intergenic |
| TCAGTCAAGATTCTCTATTA+AGG | 0.310729 | 3.1:+72413294 | MS.gene02655:CDS |
| GCAACATGTGTGATCTTCTT+AGG | 0.311495 | 3.1:+72413236 | MS.gene02655:CDS |
| TGTTGGCAGCTAAGAAGTTT+GGG | 0.311983 | 3.1:+72413923 | MS.gene02655:intron |
| GCTGAAGGGGCAAGGATGTC+TGG | 0.323064 | 3.1:+72413751 | MS.gene02655:CDS |
| TGGGGTGTTGCTGTACTTGT+TGG | 0.336473 | 3.1:+72414309 | MS.gene02655:CDS |
| GTTGAATGAAAGGACTCTTA+AGG | 0.347627 | 3.1:+72414377 | MS.gene02655:CDS |
| CTTTCATTCAACAAATTCAT+AGG | 0.348960 | 3.1:-72414366 | None:intergenic |
| ATCTTTGGACTTGGAGCTGT+TGG | 0.351212 | 3.1:+72413595 | MS.gene02655:CDS |
| TTGAATGAAAGGACTCTTAA+GGG | 0.375052 | 3.1:+72414378 | MS.gene02655:CDS |
| GTTGAACTAACTTGTTGAAC+AGG | 0.390252 | 3.1:-72413982 | None:intergenic |
| ACTTTGTCAAGAGGTGCATC+AGG | 0.391287 | 3.1:-72413400 | None:intergenic |
| GCTGCGGTTGCATGGGAGGC+GGG | 0.399452 | 3.1:+72412594 | MS.gene02655:intron |
| TCACACTGATGTTTACTTCT+GGG | 0.404127 | 3.1:+72412701 | MS.gene02655:CDS |
| GGCGGGGAAGCCACTGGTGA+TGG | 0.404743 | 3.1:+72412611 | MS.gene02655:CDS |
| AAAGATAGCAACAGATGAAC+CGG | 0.416086 | 3.1:-72413578 | None:intergenic |
| TGGAACCAGCTGCGGTTGCA+TGG | 0.416145 | 3.1:+72412586 | MS.gene02655:intron |
| TGAAATGCATCGTCTTTGTT+TGG | 0.418800 | 3.1:-72414336 | None:intergenic |
| TCTGTTGCTATCTTTGGACT+TGG | 0.419387 | 3.1:+72413586 | MS.gene02655:CDS |
| GATATTACAGGAACTGGAAC+TGG | 0.426601 | 3.1:+72414563 | MS.gene02655:intron |
| CAGTCAAGATTCTCTATTAA+GGG | 0.430904 | 3.1:+72413295 | MS.gene02655:CDS |
| CGTATATTTGGTCATGAAGC+TGG | 0.431276 | 3.1:+72412954 | MS.gene02655:CDS |
| AGCTGCGGTTGCATGGGAGG+CGG | 0.441799 | 3.1:+72412593 | MS.gene02655:intron |
| ATCAGATGTATCATACGAAT+GGG | 0.445545 | 3.1:+72414660 | MS.gene02655:CDS |
| TTGTAGAAAAGTACATGAAA+GGG | 0.453615 | 3.1:+72414445 | MS.gene02655:CDS |
| TCTGGTGCATCAAGAATCAT+TGG | 0.470218 | 3.1:+72413769 | MS.gene02655:CDS |
| CCACACTCCCCTGTGAATAC+AGG | 0.474104 | 3.1:-72413184 | None:intergenic |
| CCTGTATTCACAGGGGAGTG+TGG | 0.474817 | 3.1:+72413184 | MS.gene02655:CDS |
| CTATGAATTTGTTGAATGAA+AGG | 0.476135 | 3.1:+72414367 | MS.gene02655:CDS |
| CATGCCCTGCCTGTATTCAC+AGG | 0.480140 | 3.1:+72413175 | MS.gene02655:CDS |
| ACAGGCAGGGCATGATCCCC+TGG | 0.483648 | 3.1:-72413166 | None:intergenic |
| CTGTATTCACAGGGGAGTGT+GGG | 0.483700 | 3.1:+72413185 | MS.gene02655:CDS |
| ACCAGCTGCGGTTGCATGGG+AGG | 0.486050 | 3.1:+72412590 | MS.gene02655:intron |
| ATGGGAGGCGGGGAAGCCAC+TGG | 0.486618 | 3.1:+72412605 | MS.gene02655:CDS |
| TGTACCTAATTCATATCGGC+TGG | 0.489612 | 3.1:-72413806 | None:intergenic |
| ACCAAAATTTAGGCTGCTGA+AGG | 0.497900 | 3.1:+72413736 | MS.gene02655:intron |
| TTCTTAGGATCAACACGGAC+AGG | 0.502318 | 3.1:+72413251 | MS.gene02655:CDS |
| TTAACCATGTCCAACACTGC+TGG | 0.504696 | 3.1:+72412209 | None:intergenic |
| GGAACCAGCTGCGGTTGCAT+GGG | 0.505012 | 3.1:+72412587 | MS.gene02655:intron |
| GCATTGTACCTAATTCATAT+CGG | 0.505878 | 3.1:-72413810 | None:intergenic |
| GTTGTAGAAAAGTACATGAA+AGG | 0.509192 | 3.1:+72414444 | MS.gene02655:CDS |
| AACCTTAGGAAGATCAGTGC+GGG | 0.515441 | 3.1:-72414424 | None:intergenic |
| CCAAAATTTAGGCTGCTGAA+GGG | 0.515926 | 3.1:+72413737 | MS.gene02655:intron |
| ATGTAGATGTACCGACGAAA+TGG | 0.519367 | 3.1:-72413330 | None:intergenic |
| CATTCGTATGATACATCTGA+TGG | 0.531716 | 3.1:-72414658 | None:intergenic |
| CTGCGGTTGCATGGGAGGCG+GGG | 0.533283 | 3.1:+72412595 | MS.gene02655:CDS |
| CTCAGCTGTGGAATATGCAC+AGG | 0.542001 | 3.1:+72413430 | MS.gene02655:CDS |
| TGTTTACTTCTGGGAAGCTA+AGG | 0.543162 | 3.1:+72412710 | MS.gene02655:CDS |
| AGACGGACTTCACCGGCTTG+TGG | 0.546092 | 3.1:-72412654 | None:intergenic |
| CATCAGATGTATCATACGAA+TGG | 0.550987 | 3.1:+72414659 | MS.gene02655:CDS |
| AGTAAACATCAGTGTGACAA+AGG | 0.551878 | 3.1:-72412695 | None:intergenic |
| TCTAATGTCGATCAGGATTG+TGG | 0.553261 | 3.1:+72413111 | MS.gene02655:intron |
| GTACCGACGAAATGGTGAAT+CGG | 0.555313 | 3.1:-72413322 | None:intergenic |
| AAAGTTTGTATTCTCAGCTG+TGG | 0.560671 | 3.1:+72413418 | MS.gene02655:CDS |
| GTTGGCAGCTAAGAAGTTTG+GGG | 0.561606 | 3.1:+72413924 | MS.gene02655:intron |
| TATCTTGAGACGGACTTCAC+CGG | 0.564597 | 3.1:-72412661 | None:intergenic |
| TGAATGTACCGGTAGCATCC+AGG | 0.564756 | 3.1:+72414153 | MS.gene02655:CDS |
| GGTGTGACAGATCTAAAACC+AGG | 0.570323 | 3.1:+72413148 | MS.gene02655:CDS |
| GATCATAGCCTGGATGCTAC+CGG | 0.570554 | 3.1:-72414161 | None:intergenic |
| GTAAACATCAGTGTGACAAA+GGG | 0.577816 | 3.1:-72412694 | None:intergenic |
| ACCCCGCACTGATCTTCCTA+AGG | 0.578506 | 3.1:+72414422 | MS.gene02655:CDS |
| CAAAATTTAGGCTGCTGAAG+GGG | 0.579040 | 3.1:+72413738 | MS.gene02655:intron |
| ACTCCCCTGTGAATACAGGC+AGG | 0.579461 | 3.1:-72413180 | None:intergenic |
| GAGTACACTGTGGTTCATGC+CGG | 0.586769 | 3.1:+72413358 | MS.gene02655:CDS |
| AGAATACAAACTTTGTCAAG+AGG | 0.589584 | 3.1:-72413409 | None:intergenic |
| TTTAGGCTGCTGAAGGGGCA+AGG | 0.589857 | 3.1:+72413743 | MS.gene02655:intron |
| CCAAATATACGAGGAAACAA+TGG | 0.590862 | 3.1:-72412942 | None:intergenic |
| TGTATTCACAGGGGAGTGTG+GGG | 0.591767 | 3.1:+72413186 | MS.gene02655:CDS |
| GATTGTGGAGAGCGTAGGTG+AGG | 0.594735 | 3.1:+72413126 | MS.gene02655:CDS |
| TCTTAGGATCAACACGGACA+GGG | 0.595918 | 3.1:+72413252 | MS.gene02655:CDS |
| GAGGTGGCGCCACCACAAGC+CGG | 0.602446 | 3.1:+72412642 | MS.gene02655:CDS |
| GATGATCTGACCAGCAGTGT+TGG | 0.604173 | 3.1:-72412219 | None:intergenic |
| TGTAGAAAAGTACATGAAAG+GGG | 0.605963 | 3.1:+72414446 | MS.gene02655:CDS |
| CTTTGTCAAGAGGTGCATCA+GGG | 0.608085 | 3.1:-72413399 | None:intergenic |
| GTGTGACAGATCTAAAACCA+GGG | 0.609191 | 3.1:+72413149 | MS.gene02655:CDS |
| CGAATGCGGAGATCATAGCC+TGG | 0.612238 | 3.1:-72414171 | None:intergenic |
| ACTGGTGATGGAAGAAGTAG+AGG | 0.612676 | 3.1:+72412623 | MS.gene02655:CDS |
| ACTTGGAGCTGTTGGCCTTG+CGG | 0.616948 | 3.1:+72413603 | MS.gene02655:CDS |
| TCTACTTCTTCCATCACCAG+TGG | 0.617716 | 3.1:-72412621 | None:intergenic |
| CGGACTTCACCGGCTTGTGG+TGG | 0.618100 | 3.1:-72412651 | None:intergenic |
| CTGTCCACATTGTAAGTCAG+AGG | 0.618115 | 3.1:+72413210 | MS.gene02655:CDS |
| AGCACGATCCACACCTCCGT+TGG | 0.619268 | 3.1:-72414128 | None:intergenic |
| CAGCCGATTCACCATTTCGT+CGG | 0.625858 | 3.1:+72413319 | MS.gene02655:CDS |
| ATCGTGGACACATTCGAATG+CGG | 0.633600 | 3.1:-72414185 | None:intergenic |
| CTCTCCTCTGACTTACAATG+TGG | 0.634714 | 3.1:-72413214 | None:intergenic |
| GATCGTGCTGTTGAATGTAC+CGG | 0.639046 | 3.1:+72414142 | MS.gene02655:CDS |
| ATATTTGGTCATGAAGCTGG+AGG | 0.639817 | 3.1:+72412957 | MS.gene02655:CDS |
| ATGCCCTGCCTGTATTCACA+GGG | 0.640094 | 3.1:+72413176 | MS.gene02655:CDS |
| AACATCAGTGTGACAAAGGG+AGG | 0.641785 | 3.1:-72412691 | None:intergenic |
| ATTGTGGAGAGCGTAGGTGA+GGG | 0.642129 | 3.1:+72413127 | MS.gene02655:CDS |
| AGGTGAAGAGTATCTTGAGA+CGG | 0.642729 | 3.1:-72412671 | None:intergenic |
| TCAGATGTATCATACGAATG+GGG | 0.645185 | 3.1:+72414661 | MS.gene02655:CDS |
| GGTCAGATCATCAAGTGTAG+AGG | 0.647505 | 3.1:+72412230 | MS.gene02655:CDS |
| ATCAGGATTGTGGAGAGCGT+AGG | 0.648130 | 3.1:+72413121 | MS.gene02655:intron |
| CAGATGTATCATACGAATGG+GGG | 0.655213 | 3.1:+72414662 | MS.gene02655:CDS |
| CTGACCAGCAGTGTTGGACA+TGG | 0.657057 | 3.1:-72412213 | None:intergenic |
| TATTTGGTCATGAAGCTGGA+GGG | 0.661233 | 3.1:+72412958 | MS.gene02655:CDS |
| CTTAGGATCAACACGGACAG+GGG | 0.662424 | 3.1:+72413253 | MS.gene02655:CDS |
| AAGATAGCAACAGATGAACC+GGG | 0.667433 | 3.1:-72413577 | None:intergenic |
| GGTGATGGAAGAAGTAGAGG+TGG | 0.673070 | 3.1:+72412626 | MS.gene02655:CDS |
| CTCCCCTGTGAATACAGGCA+GGG | 0.674123 | 3.1:-72413179 | None:intergenic |
| AATGTTGCTAAACCAAAACC+CGG | 0.674195 | 3.1:+72413559 | MS.gene02655:CDS |
| TGAAATGACCAACGGAGGTG+TGG | 0.677840 | 3.1:+72414120 | MS.gene02655:CDS |
| GTAATTGCTGAAATGACCAA+CGG | 0.682154 | 3.1:+72414112 | MS.gene02655:CDS |
| ACCTTAGGAAGATCAGTGCG+GGG | 0.690568 | 3.1:-72414423 | None:intergenic |
| CAACCTTAGGAAGATCAGTG+CGG | 0.707330 | 3.1:-72414425 | None:intergenic |
| TGTGACAGATCTAAAACCAG+GGG | 0.720106 | 3.1:+72413150 | MS.gene02655:CDS |
| GCTTCATGACCAAATATACG+AGG | 0.725898 | 3.1:-72412951 | None:intergenic |
| TGCCCTGCCTGTATTCACAG+GGG | 0.737931 | 3.1:+72413177 | MS.gene02655:CDS |
| TGATCTTCTTAGGATCAACA+CGG | 0.743683 | 3.1:+72413246 | MS.gene02655:CDS |
| ATTGCTGAAATGACCAACGG+AGG | 0.744796 | 3.1:+72414115 | MS.gene02655:CDS |
| TACATTCAGCGAGTACACTG+TGG | 0.749330 | 3.1:+72413348 | MS.gene02655:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAAAATAACAATCTAAA+TGG | - | chr3.1:72412323-72412342 | None:intergenic | 10.0% |
| !! | ACTTAAAATTAATTTATAGT+TGG | - | chr3.1:72412373-72412392 | None:intergenic | 10.0% |
| !! | ATATATTAATATCTAAACAT+TGG | - | chr3.1:72413467-72413486 | None:intergenic | 10.0% |
| !!! | TAATTTTAGTTACAAAATAT+TGG | + | chr3.1:72412811-72412830 | MS.gene02655:intron | 10.0% |
| !! | AGATATTAATATATGTTTCT+TGG | + | chr3.1:72413473-72413492 | MS.gene02655:intron | 15.0% |
| !! | ATTTATGTATAATTCTTCTT+AGG | + | chr3.1:72412786-72412805 | MS.gene02655:intron | 15.0% |
| !! | TTGTAAATTGCAATTATTAT+CGG | + | chr3.1:72413672-72413691 | MS.gene02655:intron | 15.0% |
| !!! | TTCTTTTTAAACCAAAATTT+AGG | + | chr3.1:72413726-72413745 | MS.gene02655:intron | 15.0% |
| !! | AAAATAACAATCTAAATGGA+AGG | - | chr3.1:72412319-72412338 | None:intergenic | 20.0% |
| !! | AGAATTTGAGAAAAAATAGA+TGG | - | chr3.1:72412258-72412277 | None:intergenic | 20.0% |
| !! | TCGAAAATTATTATCAATGT+CGG | + | chr3.1:72412487-72412506 | MS.gene02655:intron | 20.0% |
| !!! | ATGAATGTTATTGATAATTG+TGG | + | chr3.1:72413087-72413106 | MS.gene02655:intron | 20.0% |
| !!! | TCTCTTATTTTTTTTCTTGT+TGG | + | chr3.1:72413906-72413925 | MS.gene02655:intron | 20.0% |
| !!! | TGAATGTTATTGATAATTGT+GGG | + | chr3.1:72413088-72413107 | MS.gene02655:intron | 20.0% |
| !!! | TTGACTTTTTGTTTTTCTAA+GGG | + | chr3.1:72414285-72414304 | MS.gene02655:intron | 20.0% |
| ! | CTTAGAAAAACAAAAAGTCA+AGG | - | chr3.1:72414286-72414305 | None:intergenic | 25.0% |
| ! | CTTTCATTCAACAAATTCAT+AGG | - | chr3.1:72414369-72414388 | None:intergenic | 25.0% |
| ! | TATGCTTTGATTACATAACA+CGG | + | chr3.1:72412733-72412752 | MS.gene02655:intron | 25.0% |
| ! | TGATATTACTGTGATATTAC+AGG | + | chr3.1:72414551-72414570 | MS.gene02655:intron | 25.0% |
| !! | AACTTCAATCTTAAAGCATT+TGG | - | chr3.1:72413849-72413868 | None:intergenic | 25.0% |
| !! | GAATTTGAAGTATGATTCTA+TGG | + | chr3.1:72414031-72414050 | MS.gene02655:intron | 25.0% |
| !! | TCTTATATTCCTTTGTTTCA+GGG | + | chr3.1:72412912-72412931 | MS.gene02655:intron | 25.0% |
| !! | TTCTTATATTCCTTTGTTTC+AGG | + | chr3.1:72412911-72412930 | MS.gene02655:intron | 25.0% |
| !! | TTGTAGAAAAGTACATGAAA+GGG | + | chr3.1:72414445-72414464 | MS.gene02655:CDS | 25.0% |
| !!! | AATATTGGCATACTAGTTTT+TGG | + | chr3.1:72412826-72412845 | MS.gene02655:intron | 25.0% |
| !!! | ATTTTGTTTAACATACATCG+TGG | - | chr3.1:72414204-72414223 | None:intergenic | 25.0% |
| !!! | CTATGAATTTGTTGAATGAA+AGG | + | chr3.1:72414367-72414386 | MS.gene02655:CDS | 25.0% |
| !!! | CTTGACTTTTTGTTTTTCTA+AGG | + | chr3.1:72414284-72414303 | MS.gene02655:intron | 25.0% |
| !!! | TGATGTTTGATTTTTATACG+AGG | + | chr3.1:72414061-72414080 | MS.gene02655:intron | 25.0% |
| !!! | TTTTTGTTTTTCTAAGGGTT+GGG | + | chr3.1:72414290-72414309 | MS.gene02655:intron | 25.0% |
| AAGTAGTATGATATGAAGCA+CGG | - | chr3.1:72412540-72412559 | None:intergenic | 30.0% | |
| AGAATACAAACTTTGTCAAG+AGG | - | chr3.1:72413412-72413431 | None:intergenic | 30.0% | |
| ATCAGATGTATCATACGAAT+GGG | + | chr3.1:72414660-72414679 | MS.gene02655:CDS | 30.0% | |
| CAGTCAAGATTCTCTATTAA+GGG | + | chr3.1:72413295-72413314 | MS.gene02655:CDS | 30.0% | |
| GAATTAGGAAAACATAGACT+CGG | - | chr3.1:72413499-72413518 | None:intergenic | 30.0% | |
| GCATTGTACCTAATTCATAT+CGG | - | chr3.1:72413813-72413832 | None:intergenic | 30.0% | |
| TCAGTCAAGATTCTCTATTA+AGG | + | chr3.1:72413294-72413313 | MS.gene02655:CDS | 30.0% | |
| TGCATTGCAGTGATTTAATA+TGG | + | chr3.1:72412886-72412905 | MS.gene02655:intron | 30.0% | |
| TTGAATGAAAGGACTCTTAA+GGG | + | chr3.1:72414378-72414397 | MS.gene02655:CDS | 30.0% | |
| ! | ATGTACTTTTCTACAACCTT+AGG | - | chr3.1:72414441-72414460 | None:intergenic | 30.0% |
| ! | GCTTTGTTAATCTCTGAAAA+TGG | - | chr3.1:72414612-72414631 | None:intergenic | 30.0% |
| ! | GTTGTAGAAAAGTACATGAA+AGG | + | chr3.1:72414444-72414463 | MS.gene02655:CDS | 30.0% |
| ! | TGTAGAAAAGTACATGAAAG+GGG | + | chr3.1:72414446-72414465 | MS.gene02655:CDS | 30.0% |
| ! | TTCAATCTTAAAGCATTTGG+TGG | - | chr3.1:72413846-72413865 | None:intergenic | 30.0% |
| ! | TTTGGTTTAAAAAGAAGAGC+AGG | - | chr3.1:72413722-72413741 | None:intergenic | 30.0% |
| !! | ACTCTTAAGGGTACATTTTA+TGG | + | chr3.1:72414390-72414409 | MS.gene02655:CDS | 30.0% |
| !! | CTTTTGATTACATGCTGAAA+GGG | + | chr3.1:72414631-72414650 | MS.gene02655:CDS | 30.0% |
| !! | TTTTGATTACATGCTGAAAG+GGG | + | chr3.1:72414632-72414651 | MS.gene02655:CDS | 30.0% |
| !!! | CTTTTTGTTTTTCTAAGGGT+TGG | + | chr3.1:72414289-72414308 | MS.gene02655:intron | 30.0% |
| !!! | TTTCTAGCTTTTGCTTTTTC+AGG | + | chr3.1:72412291-72412310 | MS.gene02655:intron | 30.0% |
| !!! | TTTTGTTTTTCTAAGGGTTG+GGG | + | chr3.1:72414291-72414310 | MS.gene02655:intron | 30.0% |
| AAAGATAGCAACAGATGAAC+CGG | - | chr3.1:72413581-72413600 | None:intergenic | 35.0% | |
| AAAGTTTGTATTCTCAGCTG+TGG | + | chr3.1:72413418-72413437 | MS.gene02655:CDS | 35.0% | |
| AATGTTGCTAAACCAAAACC+CGG | + | chr3.1:72413559-72413578 | MS.gene02655:CDS | 35.0% | |
| ACAGGTTTGTCATGATCTTT+CGG | - | chr3.1:72413967-72413986 | None:intergenic | 35.0% | |
| AGAAGAGCAGGAGTTAATAA+TGG | - | chr3.1:72413710-72413729 | None:intergenic | 35.0% | |
| AGTAAACATCAGTGTGACAA+AGG | - | chr3.1:72412698-72412717 | None:intergenic | 35.0% | |
| ATTTGCTTCCATGCTTCTAT+AGG | + | chr3.1:72413520-72413539 | MS.gene02655:intron | 35.0% | |
| CAGAAAATGCATAGAAATCG+TGG | - | chr3.1:72414007-72414026 | None:intergenic | 35.0% | |
| CATCAGATGTATCATACGAA+TGG | + | chr3.1:72414659-72414678 | MS.gene02655:CDS | 35.0% | |
| CATTCGTATGATACATCTGA+TGG | - | chr3.1:72414661-72414680 | None:intergenic | 35.0% | |
| CCAAATATACGAGGAAACAA+TGG | - | chr3.1:72412945-72412964 | None:intergenic | 35.0% | |
| CCATTGTTTCCTCGTATATT+TGG | + | chr3.1:72412942-72412961 | MS.gene02655:CDS | 35.0% | |
| GAAGTATGTTAGTGCTTCAT+AGG | - | chr3.1:72412411-72412430 | None:intergenic | 35.0% | |
| GCACTAACATACTTCAGATT+AGG | + | chr3.1:72412416-72412435 | MS.gene02655:intron | 35.0% | |
| GCATGGAAGCAAATTGAATT+AGG | - | chr3.1:72413514-72413533 | None:intergenic | 35.0% | |
| GTAAACATCAGTGTGACAAA+GGG | - | chr3.1:72412697-72412716 | None:intergenic | 35.0% | |
| GTAATTGCTGAAATGACCAA+CGG | + | chr3.1:72414112-72414131 | MS.gene02655:CDS | 35.0% | |
| GTTGAATGAAAGGACTCTTA+AGG | + | chr3.1:72414377-72414396 | MS.gene02655:CDS | 35.0% | |
| TACTGTGATATTACAGGAAC+TGG | + | chr3.1:72414557-72414576 | MS.gene02655:intron | 35.0% | |
| TCAATGAAATCATATGCGTC+AGG | - | chr3.1:72412455-72412474 | None:intergenic | 35.0% | |
| TCACACTGATGTTTACTTCT+GGG | + | chr3.1:72412701-72412720 | MS.gene02655:CDS | 35.0% | |
| TCAGATGTATCATACGAATG+GGG | + | chr3.1:72414661-72414680 | MS.gene02655:CDS | 35.0% | |
| TGAAATGCATCGTCTTTGTT+TGG | - | chr3.1:72414339-72414358 | None:intergenic | 35.0% | |
| TGATCTTCTTAGGATCAACA+CGG | + | chr3.1:72413246-72413265 | MS.gene02655:CDS | 35.0% | |
| TGGTTCCAAAACACAATCAA+GGG | - | chr3.1:72412574-72412593 | None:intergenic | 35.0% | |
| ! | TGAATCCCTTGATTGTGTTT+TGG | + | chr3.1:72412566-72412585 | MS.gene02655:intron | 35.0% |
| !! | GCTTTTGATTACATGCTGAA+AGG | + | chr3.1:72414630-72414649 | MS.gene02655:CDS | 35.0% |
| !! | GGTTCTGTTTGTTTTCTTCA+AGG | + | chr3.1:72412847-72412866 | MS.gene02655:intron | 35.0% |
| !! | GTTGAACTAACTTGTTGAAC+AGG | - | chr3.1:72413985-72414004 | None:intergenic | 35.0% |
| !! | GTTGATTTTTGCAACACATC+CGG | - | chr3.1:72413380-72413399 | None:intergenic | 35.0% |
| !! | TCTTTTTAGCAACAAGCAAG+AGG | - | chr3.1:72414233-72414252 | None:intergenic | 35.0% |
| AAGATAGCAACAGATGAACC+GGG | - | chr3.1:72413580-72413599 | None:intergenic | 40.0% | |
| ACCAAAATTTAGGCTGCTGA+AGG | + | chr3.1:72413736-72413755 | MS.gene02655:intron | 40.0% | |
| ATATTTGGTCATGAAGCTGG+AGG | + | chr3.1:72412957-72412976 | MS.gene02655:CDS | 40.0% | |
| CAAAATTTAGGCTGCTGAAG+GGG | + | chr3.1:72413738-72413757 | MS.gene02655:intron | 40.0% | |
| CAGATGTATCATACGAATGG+GGG | + | chr3.1:72414662-72414681 | MS.gene02655:CDS | 40.0% | |
| CAGGTTTGTCATGATCTTTC+GGG | - | chr3.1:72413966-72413985 | None:intergenic | 40.0% | |
| CCAAAATTTAGGCTGCTGAA+GGG | + | chr3.1:72413737-72413756 | MS.gene02655:intron | 40.0% | |
| CGTATATTTGGTCATGAAGC+TGG | + | chr3.1:72412954-72412973 | MS.gene02655:CDS | 40.0% | |
| CTGGTTCCAAAACACAATCA+AGG | - | chr3.1:72412575-72412594 | None:intergenic | 40.0% | |
| CTTTGATTACATAACACGGC+GGG | + | chr3.1:72412737-72412756 | MS.gene02655:intron | 40.0% | |
| GATATTACAGGAACTGGAAC+TGG | + | chr3.1:72414563-72414582 | MS.gene02655:intron | 40.0% | |
| GCAACATGTGTGATCTTCTT+AGG | + | chr3.1:72413236-72413255 | MS.gene02655:CDS | 40.0% | |
| GCTTCATGACCAAATATACG+AGG | - | chr3.1:72412954-72412973 | None:intergenic | 40.0% | |
| GCTTTGATTACATAACACGG+CGG | + | chr3.1:72412736-72412755 | MS.gene02655:intron | 40.0% | |
| GGAGATTGAGATGTGAACAT+TGG | + | chr3.1:72414082-72414101 | MS.gene02655:intron | 40.0% | |
| GGTTCAGCTTAGCTTAAGTA+AGG | - | chr3.1:72414265-72414284 | None:intergenic | 40.0% | |
| GGTTCATCTGTTGCTATCTT+TGG | + | chr3.1:72413580-72413599 | MS.gene02655:CDS | 40.0% | |
| GTCACACTGATGTTTACTTC+TGG | + | chr3.1:72412700-72412719 | MS.gene02655:CDS | 40.0% | |
| GTTTCCAGCCGATATGAATT+AGG | + | chr3.1:72413802-72413821 | MS.gene02655:CDS | 40.0% | |
| TACAAGAGTAACATACCGCA+AGG | - | chr3.1:72413621-72413640 | None:intergenic | 40.0% | |
| TATTTGGTCATGAAGCTGGA+GGG | + | chr3.1:72412958-72412977 | MS.gene02655:CDS | 40.0% | |
| TCTAATGTCGATCAGGATTG+TGG | + | chr3.1:72413111-72413130 | MS.gene02655:intron | 40.0% | |
| TCTGGTGCATCAAGAATCAT+TGG | + | chr3.1:72413769-72413788 | MS.gene02655:CDS | 40.0% | |
| TCTGTTGCTATCTTTGGACT+TGG | + | chr3.1:72413586-72413605 | MS.gene02655:CDS | 40.0% | |
| TGTACCTAATTCATATCGGC+TGG | - | chr3.1:72413809-72413828 | None:intergenic | 40.0% | |
| TGTTGGCAGCTAAGAAGTTT+GGG | + | chr3.1:72413923-72413942 | MS.gene02655:intron | 40.0% | |
| TTCCATGCTTCTATAGGTCT+TGG | + | chr3.1:72413526-72413545 | MS.gene02655:intron | 40.0% | |
| TTGTTGGCAGCTAAGAAGTT+TGG | + | chr3.1:72413922-72413941 | MS.gene02655:intron | 40.0% | |
| ! | ATGTAGATGTACCGACGAAA+TGG | - | chr3.1:72413333-72413352 | None:intergenic | 40.0% |
| ! | GTGTGACAGATCTAAAACCA+GGG | + | chr3.1:72413149-72413168 | MS.gene02655:CDS | 40.0% |
| ! | TGTGACAGATCTAAAACCAG+GGG | + | chr3.1:72413150-72413169 | MS.gene02655:CDS | 40.0% |
| ! | TGTTTACTTCTGGGAAGCTA+AGG | + | chr3.1:72412710-72412729 | MS.gene02655:CDS | 40.0% |
| !! | AGATGTGAACATTGGTTTGC+AGG | + | chr3.1:72414090-72414109 | MS.gene02655:intron | 40.0% |
| !! | AGGTGAAGAGTATCTTGAGA+CGG | - | chr3.1:72412674-72412693 | None:intergenic | 40.0% |
| AACATCAGTGTGACAAAGGG+AGG | - | chr3.1:72412694-72412713 | None:intergenic | 45.0% | |
| AACATGCGCATACACACTCA+AGG | - | chr3.1:72413644-72413663 | None:intergenic | 45.0% | |
| AACCTTAGGAAGATCAGTGC+GGG | - | chr3.1:72414427-72414446 | None:intergenic | 45.0% | |
| ATCGTGGACACATTCGAATG+CGG | - | chr3.1:72414188-72414207 | None:intergenic | 45.0% | |
| ATCTTTGGACTTGGAGCTGT+TGG | + | chr3.1:72413595-72413614 | MS.gene02655:CDS | 45.0% | |
| ATTGCTGAAATGACCAACGG+AGG | + | chr3.1:72414115-72414134 | MS.gene02655:CDS | 45.0% | |
| CAACCTTAGGAAGATCAGTG+CGG | - | chr3.1:72414428-72414447 | None:intergenic | 45.0% | |
| CACCAAGACCTATAGAAGCA+TGG | - | chr3.1:72413531-72413550 | None:intergenic | 45.0% | |
| CATCGAATCGTGCACAGTTA+CGG | + | chr3.1:72414481-72414500 | MS.gene02655:intron | 45.0% | |
| CTCTCCTCTGACTTACAATG+TGG | - | chr3.1:72413217-72413236 | None:intergenic | 45.0% | |
| CTGTCCACATTGTAAGTCAG+AGG | + | chr3.1:72413210-72413229 | MS.gene02655:CDS | 45.0% | |
| GGTCAGATCATCAAGTGTAG+AGG | + | chr3.1:72412230-72412249 | MS.gene02655:CDS | 45.0% | |
| GTTGGCAGCTAAGAAGTTTG+GGG | + | chr3.1:72413924-72413943 | MS.gene02655:intron | 45.0% | |
| TACATTCAGCGAGTACACTG+TGG | + | chr3.1:72413348-72413367 | MS.gene02655:CDS | 45.0% | |
| TATGAAGCACGGATACACAC+CGG | - | chr3.1:72412529-72412548 | None:intergenic | 45.0% | |
| TCTACTTCTTCCATCACCAG+TGG | - | chr3.1:72412624-72412643 | None:intergenic | 45.0% | |
| TCTTAGGATCAACACGGACA+GGG | + | chr3.1:72413252-72413271 | MS.gene02655:CDS | 45.0% | |
| TTCTTAGGATCAACACGGAC+AGG | + | chr3.1:72413251-72413270 | MS.gene02655:CDS | 45.0% | |
| TTGTGGGTCTAATGTCGATC+AGG | + | chr3.1:72413104-72413123 | MS.gene02655:intron | 45.0% | |
| ! | ACTTTGTCAAGAGGTGCATC+AGG | - | chr3.1:72413403-72413422 | None:intergenic | 45.0% |
| ! | CCCTTCAGCAGCCTAAATTT+TGG | - | chr3.1:72413740-72413759 | None:intergenic | 45.0% |
| ! | CTTTGTCAAGAGGTGCATCA+GGG | - | chr3.1:72413402-72413421 | None:intergenic | 45.0% |
| ! | GATCGTGCTGTTGAATGTAC+CGG | + | chr3.1:72414142-72414161 | MS.gene02655:CDS | 45.0% |
| ! | GGTGTGACAGATCTAAAACC+AGG | + | chr3.1:72413148-72413167 | MS.gene02655:CDS | 45.0% |
| ! | GTACCGACGAAATGGTGAAT+CGG | - | chr3.1:72413325-72413344 | None:intergenic | 45.0% |
| ! | TATCTTGAGACGGACTTCAC+CGG | - | chr3.1:72412664-72412683 | None:intergenic | 45.0% |
| !! | ACTGGTGATGGAAGAAGTAG+AGG | + | chr3.1:72412623-72412642 | MS.gene02655:CDS | 45.0% |
| !!! | TTGTGTTTTGGAACCAGCTG+CGG | + | chr3.1:72412578-72412597 | MS.gene02655:intron | 45.0% |
| ACCTTAGGAAGATCAGTGCG+GGG | - | chr3.1:72414426-72414445 | None:intergenic | 50.0% | |
| ATGCCCTGCCTGTATTCACA+GGG | + | chr3.1:72413176-72413195 | MS.gene02655:CDS | 50.0% | |
| CTCAGCTGTGGAATATGCAC+AGG | + | chr3.1:72413430-72413449 | MS.gene02655:CDS | 50.0% | |
| CTTAGGATCAACACGGACAG+GGG | + | chr3.1:72413253-72413272 | MS.gene02655:CDS | 50.0% | |
| GAGTACACTGTGGTTCATGC+CGG | + | chr3.1:72413358-72413377 | MS.gene02655:CDS | 50.0% | |
| GATACACACCGGACACAACA+TGG | - | chr3.1:72412518-72412537 | None:intergenic | 50.0% | |
| GATCATAGCCTGGATGCTAC+CGG | - | chr3.1:72414164-72414183 | None:intergenic | 50.0% | |
| GATGATCTGACCAGCAGTGT+TGG | - | chr3.1:72412222-72412241 | None:intergenic | 50.0% | |
| GGAGTCTGACCCTGAAACAA+AGG | - | chr3.1:72412924-72412943 | None:intergenic | 50.0% | |
| TGAAATGACCAACGGAGGTG+TGG | + | chr3.1:72414120-72414139 | MS.gene02655:CDS | 50.0% | |
| ! | ATCAGGATTGTGGAGAGCGT+AGG | + | chr3.1:72413121-72413140 | MS.gene02655:intron | 50.0% |
| ! | ATTGTGGAGAGCGTAGGTGA+GGG | + | chr3.1:72413127-72413146 | MS.gene02655:CDS | 50.0% |
| ! | CAGCCGATTCACCATTTCGT+CGG | + | chr3.1:72413319-72413338 | MS.gene02655:CDS | 50.0% |
| ! | CTGTATTCACAGGGGAGTGT+GGG | + | chr3.1:72413185-72413204 | MS.gene02655:CDS | 50.0% |
| ! | GCAACAGATGAACCGGGTTT+TGG | - | chr3.1:72413574-72413593 | None:intergenic | 50.0% |
| ! | TGAATGTACCGGTAGCATCC+AGG | + | chr3.1:72414153-72414172 | MS.gene02655:CDS | 50.0% |
| ! | TGTATTCACAGGGGAGTGTG+GGG | + | chr3.1:72413186-72413205 | MS.gene02655:CDS | 50.0% |
| !! | GGTGATGGAAGAAGTAGAGG+TGG | + | chr3.1:72412626-72412645 | MS.gene02655:CDS | 50.0% |
| !! | TGGGGTGTTGCTGTACTTGT+TGG | + | chr3.1:72414309-72414328 | MS.gene02655:CDS | 50.0% |
| ACTCCCCTGTGAATACAGGC+AGG | - | chr3.1:72413183-72413202 | None:intergenic | 55.0% | |
| CATGCCCTGCCTGTATTCAC+AGG | + | chr3.1:72413175-72413194 | MS.gene02655:CDS | 55.0% | |
| CCACACTCCCCTGTGAATAC+AGG | - | chr3.1:72413187-72413206 | None:intergenic | 55.0% | |
| CCTGTATTCACAGGGGAGTG+TGG | + | chr3.1:72413184-72413203 | MS.gene02655:CDS | 55.0% | |
| CGAATGCGGAGATCATAGCC+TGG | - | chr3.1:72414174-72414193 | None:intergenic | 55.0% | |
| CGGTGTGTCCATGTTGTGTC+CGG | + | chr3.1:72412507-72412526 | MS.gene02655:intron | 55.0% | |
| CTCCCCTGTGAATACAGGCA+GGG | - | chr3.1:72413182-72413201 | None:intergenic | 55.0% | |
| TGCCCTGCCTGTATTCACAG+GGG | + | chr3.1:72413177-72413196 | MS.gene02655:CDS | 55.0% | |
| TTTAGGCTGCTGAAGGGGCA+AGG | + | chr3.1:72413743-72413762 | MS.gene02655:intron | 55.0% | |
| ! | ACCCCGCACTGATCTTCCTA+AGG | + | chr3.1:72414422-72414441 | MS.gene02655:CDS | 55.0% |
| ! | GATTGTGGAGAGCGTAGGTG+AGG | + | chr3.1:72413126-72413145 | MS.gene02655:CDS | 55.0% |
| !! | ACTTGGAGCTGTTGGCCTTG+CGG | + | chr3.1:72413603-72413622 | MS.gene02655:CDS | 55.0% |
| AGCACGATCCACACCTCCGT+TGG | - | chr3.1:72414131-72414150 | None:intergenic | 60.0% | |
| GCTGAAGGGGCAAGGATGTC+TGG | + | chr3.1:72413751-72413770 | MS.gene02655:CDS | 60.0% | |
| GGAACCAGCTGCGGTTGCAT+GGG | + | chr3.1:72412587-72412606 | MS.gene02655:intron | 60.0% | |
| TGGAACCAGCTGCGGTTGCA+TGG | + | chr3.1:72412586-72412605 | MS.gene02655:intron | 60.0% | |
| !! | AGACGGACTTCACCGGCTTG+TGG | - | chr3.1:72412657-72412676 | None:intergenic | 60.0% |
| ACAGGCAGGGCATGATCCCC+TGG | - | chr3.1:72413169-72413188 | None:intergenic | 65.0% | |
| ACCAGCTGCGGTTGCATGGG+AGG | + | chr3.1:72412590-72412609 | MS.gene02655:intron | 65.0% | |
| AGCTGCGGTTGCATGGGAGG+CGG | + | chr3.1:72412593-72412612 | MS.gene02655:intron | 65.0% | |
| !! | CGGACTTCACCGGCTTGTGG+TGG | - | chr3.1:72412654-72412673 | None:intergenic | 65.0% |
| ATGGGAGGCGGGGAAGCCAC+TGG | + | chr3.1:72412605-72412624 | MS.gene02655:CDS | 70.0% | |
| CTGCGGTTGCATGGGAGGCG+GGG | + | chr3.1:72412595-72412614 | MS.gene02655:CDS | 70.0% | |
| GAGGTGGCGCCACCACAAGC+CGG | + | chr3.1:72412642-72412661 | MS.gene02655:CDS | 70.0% | |
| GCCTCCCATGCAACCGCAGC+TGG | - | chr3.1:72412594-72412613 | None:intergenic | 70.0% | |
| GCTGCGGTTGCATGGGAGGC+GGG | + | chr3.1:72412594-72412613 | MS.gene02655:intron | 70.0% | |
| GGCGGGGAAGCCACTGGTGA+TGG | + | chr3.1:72412611-72412630 | MS.gene02655:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.1 | gene | 72412215 | 72414689 | 72412215 | ID=MS.gene02655 |
| chr3.1 | mRNA | 72412215 | 72414689 | 72412215 | ID=MS.gene02655.t1;Parent=MS.gene02655 |
| chr3.1 | exon | 72412215 | 72412251 | 72412215 | ID=MS.gene02655.t1.exon1;Parent=MS.gene02655.t1 |
| chr3.1 | CDS | 72412215 | 72412251 | 72412215 | ID=cds.MS.gene02655.t1;Parent=MS.gene02655.t1 |
| chr3.1 | exon | 72412595 | 72412731 | 72412595 | ID=MS.gene02655.t1.exon2;Parent=MS.gene02655.t1 |
| chr3.1 | CDS | 72412595 | 72412731 | 72412595 | ID=cds.MS.gene02655.t1;Parent=MS.gene02655.t1 |
| chr3.1 | exon | 72412933 | 72412979 | 72412933 | ID=MS.gene02655.t1.exon3;Parent=MS.gene02655.t1 |
| chr3.1 | CDS | 72412933 | 72412979 | 72412933 | ID=cds.MS.gene02655.t1;Parent=MS.gene02655.t1 |
| chr3.1 | exon | 72413126 | 72413451 | 72413126 | ID=MS.gene02655.t1.exon4;Parent=MS.gene02655.t1 |
| chr3.1 | CDS | 72413126 | 72413451 | 72413126 | ID=cds.MS.gene02655.t1;Parent=MS.gene02655.t1 |
| chr3.1 | exon | 72413542 | 72413624 | 72413542 | ID=MS.gene02655.t1.exon5;Parent=MS.gene02655.t1 |
| chr3.1 | CDS | 72413542 | 72413624 | 72413542 | ID=cds.MS.gene02655.t1;Parent=MS.gene02655.t1 |
| chr3.1 | exon | 72413748 | 72413823 | 72413748 | ID=MS.gene02655.t1.exon6;Parent=MS.gene02655.t1 |
| chr3.1 | CDS | 72413748 | 72413823 | 72413748 | ID=cds.MS.gene02655.t1;Parent=MS.gene02655.t1 |
| chr3.1 | exon | 72413932 | 72413993 | 72413932 | ID=MS.gene02655.t1.exon7;Parent=MS.gene02655.t1 |
| chr3.1 | CDS | 72413932 | 72413993 | 72413932 | ID=cds.MS.gene02655.t1;Parent=MS.gene02655.t1 |
| chr3.1 | exon | 72414112 | 72414207 | 72414112 | ID=MS.gene02655.t1.exon8;Parent=MS.gene02655.t1 |
| chr3.1 | CDS | 72414112 | 72414207 | 72414112 | ID=cds.MS.gene02655.t1;Parent=MS.gene02655.t1 |
| chr3.1 | exon | 72414306 | 72414467 | 72414306 | ID=MS.gene02655.t1.exon9;Parent=MS.gene02655.t1 |
| chr3.1 | CDS | 72414306 | 72414467 | 72414306 | ID=cds.MS.gene02655.t1;Parent=MS.gene02655.t1 |
| chr3.1 | exon | 72414573 | 72414689 | 72414573 | ID=MS.gene02655.t1.exon10;Parent=MS.gene02655.t1 |
| chr3.1 | CDS | 72414573 | 72414689 | 72414573 | ID=cds.MS.gene02655.t1;Parent=MS.gene02655.t1 |
| Gene Sequence |
| Protein sequence |
