Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene81956.t1 | XP_003602130.1 | 95.2 | 378 | 18 | 0 | 10 | 387 | 3 | 380 | 1.10E-211 | 745.7 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene81956.t1 | P12886 | 95.4 | 368 | 17 | 0 | 20 | 387 | 13 | 380 | 3.4e-211 | 735.3 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene81956.t1 | G7J5M7 | 95.2 | 378 | 18 | 0 | 10 | 387 | 3 | 380 | 7.6e-212 | 745.7 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene81956 | MS.gene95649 | PPI |
MS.gene041083 | MS.gene81956 | PPI |
MS.gene81956 | MS.gene70145 | PPI |
MS.gene010354 | MS.gene81956 | PPI |
MS.gene015154 | MS.gene81956 | PPI |
MS.gene81956 | MS.gene069804 | PPI |
MS.gene81956 | MS.gene000485 | PPI |
MS.gene50792 | MS.gene81956 | PPI |
MS.gene81956 | MS.gene89779 | PPI |
MS.gene069033 | MS.gene81956 | PPI |
MS.gene81956 | MS.gene042841 | PPI |
MS.gene030545 | MS.gene81956 | PPI |
MS.gene81956 | MS.gene49741 | PPI |
MS.gene011817 | MS.gene81956 | PPI |
MS.gene81956 | MS.gene95648 | PPI |
MS.gene81956 | MS.gene79768 | PPI |
MS.gene037523 | MS.gene81956 | PPI |
MS.gene047628 | MS.gene81956 | PPI |
MS.gene81956 | MS.gene77398 | PPI |
MS.gene99200 | MS.gene81956 | PPI |
MS.gene70056 | MS.gene81956 | PPI |
MS.gene000484 | MS.gene81956 | PPI |
MS.gene56778 | MS.gene81956 | PPI |
MS.gene73688 | MS.gene81956 | PPI |
MS.gene81956 | MS.gene83309 | PPI |
MS.gene81956 | MS.gene77397 | PPI |
MS.gene81956 | MS.gene90510 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene81956.t1 | MTR_3g089940 | 95.238 | 378 | 18 | 0 | 10 | 387 | 3 | 380 | 0.0 | 748 |
MS.gene81956.t1 | MTR_3g089940 | 97.554 | 368 | 9 | 0 | 20 | 387 | 13 | 380 | 0.0 | 748 |
MS.gene81956.t1 | MTR_3g089977 | 97.011 | 368 | 11 | 0 | 20 | 387 | 13 | 380 | 0.0 | 745 |
MS.gene81956.t1 | MTR_3g089970 | 96.739 | 368 | 12 | 0 | 20 | 387 | 14 | 381 | 0.0 | 741 |
MS.gene81956.t1 | MTR_3g089940 | 95.000 | 340 | 17 | 0 | 10 | 349 | 3 | 342 | 0.0 | 672 |
MS.gene81956.t1 | MTR_3g089940 | 97.576 | 330 | 8 | 0 | 20 | 349 | 13 | 342 | 0.0 | 671 |
MS.gene81956.t1 | MTR_7g099040 | 59.290 | 366 | 149 | 0 | 20 | 385 | 14 | 379 | 1.03e-166 | 471 |
MS.gene81956.t1 | MTR_1g069430 | 57.766 | 367 | 155 | 0 | 20 | 386 | 12 | 378 | 8.20e-162 | 459 |
MS.gene81956.t1 | MTR_6g068930 | 51.359 | 368 | 175 | 2 | 20 | 387 | 14 | 377 | 3.40e-140 | 404 |
MS.gene81956.t1 | MTR_7g068320 | 49.057 | 371 | 183 | 5 | 20 | 385 | 24 | 393 | 4.93e-123 | 361 |
MS.gene81956.t1 | MTR_7g068330 | 49.189 | 370 | 183 | 4 | 20 | 385 | 17 | 385 | 5.78e-123 | 360 |
MS.gene81956.t1 | MTR_5g087710 | 45.946 | 370 | 198 | 2 | 20 | 387 | 22 | 391 | 4.39e-119 | 351 |
MS.gene81956.t1 | MTR_3g099460 | 49.462 | 372 | 182 | 4 | 20 | 386 | 20 | 390 | 6.41e-116 | 343 |
MS.gene81956.t1 | MTR_3g099460 | 49.863 | 365 | 177 | 4 | 27 | 386 | 20 | 383 | 1.53e-114 | 339 |
MS.gene81956.t1 | MTR_3g079180 | 43.360 | 369 | 207 | 2 | 20 | 386 | 17 | 385 | 1.09e-107 | 322 |
MS.gene81956.t1 | MTR_3g099460 | 49.068 | 322 | 160 | 3 | 68 | 386 | 7 | 327 | 5.72e-96 | 290 |
MS.gene81956.t1 | MTR_0001s0660 | 40.108 | 369 | 211 | 5 | 20 | 385 | 12 | 373 | 1.20e-88 | 275 |
MS.gene81956.t1 | MTR_5g045710 | 39.946 | 368 | 214 | 5 | 20 | 385 | 12 | 374 | 3.00e-88 | 271 |
MS.gene81956.t1 | MTR_3g099460 | 52.174 | 276 | 126 | 4 | 20 | 290 | 20 | 294 | 7.14e-81 | 251 |
MS.gene81956.t1 | MTR_3g099460 | 52.788 | 269 | 121 | 4 | 27 | 290 | 20 | 287 | 2.84e-79 | 246 |
MS.gene81956.t1 | MTR_3g079170 | 43.273 | 275 | 134 | 4 | 108 | 377 | 25 | 282 | 1.14e-71 | 226 |
MS.gene81956.t1 | MTR_5g045710 | 38.095 | 294 | 178 | 3 | 93 | 385 | 1 | 291 | 9.52e-65 | 208 |
MS.gene81956.t1 | MTR_8g095220 | 31.217 | 378 | 237 | 15 | 21 | 385 | 57 | 424 | 1.49e-43 | 157 |
MS.gene81956.t1 | MTR_8g095220 | 31.102 | 254 | 161 | 8 | 21 | 265 | 57 | 305 | 1.01e-30 | 119 |
MS.gene81956.t1 | MTR_6g465010 | 24.863 | 366 | 231 | 11 | 23 | 376 | 3 | 336 | 7.57e-22 | 95.9 |
MS.gene81956.t1 | MTR_6g466320 | 24.800 | 375 | 238 | 11 | 14 | 376 | 10 | 352 | 9.00e-22 | 95.9 |
MS.gene81956.t1 | MTR_6g465010 | 24.800 | 375 | 238 | 11 | 14 | 376 | 10 | 352 | 9.00e-22 | 95.9 |
MS.gene81956.t1 | MTR_5g031190 | 23.739 | 337 | 223 | 12 | 44 | 377 | 39 | 344 | 8.08e-14 | 72.4 |
MS.gene81956.t1 | MTR_5g031390 | 24.484 | 339 | 218 | 9 | 44 | 377 | 39 | 344 | 7.91e-13 | 69.3 |
MS.gene81956.t1 | MTR_4g115300 | 25.588 | 340 | 213 | 10 | 44 | 377 | 39 | 344 | 1.92e-12 | 68.2 |
MS.gene81956.t1 | MTR_5g031230 | 23.599 | 339 | 221 | 10 | 44 | 377 | 39 | 344 | 1.85e-11 | 65.5 |
MS.gene81956.t1 | MTR_5g031360 | 23.739 | 337 | 223 | 10 | 44 | 377 | 41 | 346 | 7.53e-11 | 63.5 |
MS.gene81956.t1 | MTR_5g031210 | 24.702 | 336 | 221 | 10 | 44 | 377 | 39 | 344 | 7.53e-11 | 63.5 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene81956.t1 | AT1G77120 | 84.973 | 366 | 55 | 0 | 20 | 385 | 12 | 377 | 0.0 | 658 |
MS.gene81956.t1 | AT5G43940 | 59.341 | 364 | 148 | 0 | 20 | 383 | 12 | 375 | 1.52e-164 | 466 |
MS.gene81956.t1 | AT5G43940 | 58.856 | 367 | 151 | 0 | 17 | 383 | 21 | 387 | 5.54e-164 | 465 |
MS.gene81956.t1 | AT5G24760 | 52.459 | 366 | 170 | 2 | 20 | 385 | 18 | 379 | 7.86e-146 | 419 |
MS.gene81956.t1 | AT5G24760 | 51.412 | 354 | 168 | 2 | 32 | 385 | 1 | 350 | 8.27e-138 | 397 |
MS.gene81956.t1 | AT5G24760 | 51.412 | 354 | 168 | 2 | 32 | 385 | 1 | 350 | 8.27e-138 | 397 |
MS.gene81956.t1 | AT1G32780 | 50.529 | 378 | 177 | 2 | 20 | 387 | 13 | 390 | 3.78e-137 | 397 |
MS.gene81956.t1 | AT1G64710 | 49.051 | 369 | 185 | 2 | 20 | 385 | 12 | 380 | 5.44e-136 | 394 |
MS.gene81956.t1 | AT1G64710 | 47.899 | 357 | 183 | 2 | 32 | 385 | 1 | 357 | 1.82e-128 | 374 |
MS.gene81956.t1 | AT5G42250 | 46.612 | 369 | 194 | 3 | 20 | 385 | 21 | 389 | 1.74e-117 | 347 |
MS.gene81956.t1 | AT1G22440 | 48.670 | 376 | 180 | 6 | 20 | 387 | 16 | 386 | 2.11e-113 | 336 |
MS.gene81956.t1 | AT1G22430 | 46.900 | 371 | 194 | 3 | 20 | 387 | 18 | 388 | 8.31e-112 | 332 |
MS.gene81956.t1 | AT1G22430 | 46.900 | 371 | 194 | 3 | 20 | 387 | 18 | 388 | 8.31e-112 | 332 |
MS.gene81956.t1 | AT4G22110 | 47.733 | 375 | 185 | 5 | 20 | 387 | 19 | 389 | 8.68e-112 | 332 |
MS.gene81956.t1 | AT4G22110 | 47.733 | 375 | 185 | 5 | 20 | 387 | 19 | 389 | 8.68e-112 | 332 |
MS.gene81956.t1 | AT1G64710 | 46.732 | 306 | 161 | 1 | 82 | 385 | 6 | 311 | 4.99e-106 | 315 |
MS.gene81956.t1 | AT5G24760 | 48.120 | 266 | 137 | 1 | 120 | 385 | 1 | 265 | 6.88e-95 | 285 |
MS.gene81956.t1 | AT1G22430 | 51.095 | 274 | 131 | 3 | 20 | 290 | 18 | 291 | 2.76e-86 | 265 |
MS.gene81956.t1 | AT1G22430 | 52.743 | 237 | 110 | 2 | 20 | 254 | 18 | 254 | 4.96e-78 | 243 |
MS.gene81956.t1 | AT1G22430 | 52.743 | 237 | 110 | 2 | 20 | 254 | 18 | 254 | 4.96e-78 | 243 |
MS.gene81956.t1 | AT4G22110 | 53.138 | 239 | 104 | 3 | 20 | 253 | 19 | 254 | 1.63e-75 | 236 |
MS.gene81956.t1 | AT5G63620 | 30.458 | 371 | 236 | 14 | 21 | 379 | 59 | 419 | 1.31e-39 | 146 |
MS.gene81956.t1 | AT5G63620 | 29.810 | 369 | 241 | 12 | 21 | 379 | 59 | 419 | 3.34e-39 | 145 |
MS.gene81956.t1 | AT5G63620 | 30.992 | 242 | 154 | 8 | 21 | 253 | 59 | 296 | 1.10e-27 | 111 |
MS.gene81956.t1 | AT1G72680 | 24.523 | 367 | 239 | 10 | 17 | 377 | 7 | 341 | 1.54e-13 | 71.6 |
MS.gene81956.t1 | AT4G37990 | 24.281 | 313 | 210 | 8 | 44 | 353 | 35 | 323 | 3.53e-13 | 70.5 |
Find 120 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CCATTGTTTCCTAGAATATT+TGG | 0.189532 | 3.2:+76283872 | MS.gene81956:CDS |
ATTAAGTTGTTGTATGTATA+TGG | 0.230206 | 3.2:-76283202 | None:intergenic |
GGTTCATCTGTTGCTATCTT+TGG | 0.236969 | 3.2:+76284470 | MS.gene81956:CDS |
GCTTTGTTAATCTCTGAAAA+TGG | 0.242441 | 3.2:-76294155 | None:intergenic |
CAGGTTTGTTATGATCTTTC+GGG | 0.250765 | 3.2:-76293523 | None:intergenic |
CTGTTGGCAGCTAAGAAGTT+TGG | 0.260729 | 3.2:+76293482 | MS.gene81956:intron |
GTTTCCAGCCGATTTGAATT+AGG | 0.266295 | 3.2:+76284692 | MS.gene81956:CDS |
TGTACCGACGAAATGATAAA+TGG | 0.267199 | 3.2:-76284213 | None:intergenic |
GTCACACTGATGTTTACTTC+TGG | 0.274790 | 3.2:+76283358 | MS.gene81956:CDS |
ACAGGTTTGTTATGATCTTT+CGG | 0.289608 | 3.2:-76293524 | None:intergenic |
GGGTTTGTAGTTACCATAAA+AGG | 0.296012 | 3.2:-76293949 | None:intergenic |
GCAACAGATGAACCGGGTTT+TGG | 0.302998 | 3.2:-76284461 | None:intergenic |
GCTTCATGACCAAATATTCT+AGG | 0.304788 | 3.2:-76283881 | None:intergenic |
GCAACATGTGCGATCTTCTT+AGG | 0.308863 | 3.2:+76284126 | MS.gene81956:CDS |
TGTTGGCAGCTAAGAAGTTT+GGG | 0.311983 | 3.2:+76293483 | MS.gene81956:intron |
CCAGTCAAGATTCTCTATTA+AGG | 0.317764 | 3.2:+76284184 | MS.gene81956:CDS |
TGGGGTGTTGCTGTACTTGT+TGG | 0.336473 | 3.2:+76293855 | MS.gene81956:CDS |
TGAATCCCTTGATTGTGTTT+TGG | 0.339358 | 3.2:+76283224 | MS.gene81956:CDS |
GTTGAATGAAAGGACTCTTA+AGG | 0.347627 | 3.2:+76293923 | MS.gene81956:CDS |
CTTTCATTCAACAAATTCAT+AGG | 0.348960 | 3.2:-76293912 | None:intergenic |
ATCTTTGGACTTGGAGCTGT+TGG | 0.351212 | 3.2:+76284485 | MS.gene81956:CDS |
ACTTTGTCAAGTGGTGCGTC+AGG | 0.363668 | 3.2:-76284290 | None:intergenic |
AATGAACTAACTTGTTGAAC+AGG | 0.369416 | 3.2:-76293542 | None:intergenic |
TTGAATGAAAGGACTCTTAA+GGG | 0.375052 | 3.2:+76293924 | MS.gene81956:CDS |
GCTGCGGTTGCATGGGAGGC+GGG | 0.399452 | 3.2:+76283252 | MS.gene81956:CDS |
TGAAATGCATCATCTTTGTT+TGG | 0.400997 | 3.2:-76293882 | None:intergenic |
TCACACTGATGTTTACTTCT+GGG | 0.404127 | 3.2:+76283359 | MS.gene81956:CDS |
GGCGGGGAAGCCACTGGTGA+TGG | 0.404743 | 3.2:+76283269 | MS.gene81956:CDS |
GCCTCCCATGCAACCGCAGC+TGG | 0.405818 | 3.2:-76283249 | None:intergenic |
AAAGATAGCAACAGATGAAC+CGG | 0.416086 | 3.2:-76284468 | None:intergenic |
TGGAACCAGCTGCGGTTGCA+TGG | 0.416145 | 3.2:+76283244 | MS.gene81956:CDS |
TCTGTTGCTATCTTTGGACT+TGG | 0.419387 | 3.2:+76284476 | MS.gene81956:CDS |
GATCGTGCTGTTGAATGTAC+TGG | 0.423698 | 3.2:+76293692 | MS.gene81956:CDS |
CAGTCAAGATTCTCTATTAA+GGG | 0.427468 | 3.2:+76284185 | MS.gene81956:CDS |
GTAATTGCTGAAATGACTAA+TGG | 0.428220 | 3.2:+76293662 | MS.gene81956:CDS |
AGCTGCGGTTGCATGGGAGG+CGG | 0.441799 | 3.2:+76283251 | MS.gene81956:CDS |
CCAGTGTTCACAGGGGAGTG+TGG | 0.446920 | 3.2:+76284074 | MS.gene81956:CDS |
ACTCCCCTGTGAACACTGGC+AGG | 0.449227 | 3.2:-76284070 | None:intergenic |
TTGTAGAAAAGTACATGAAA+GGG | 0.451176 | 3.2:+76293991 | MS.gene81956:CDS |
GCTGAAGGGGCAAGGATGTC+CGG | 0.456856 | 3.2:+76284641 | MS.gene81956:CDS |
TCCGGTGCATCAAGAATCAT+TGG | 0.459319 | 3.2:+76284659 | MS.gene81956:CDS |
AGAATATTTGGTCATGAAGC+TGG | 0.461626 | 3.2:+76283884 | MS.gene81956:CDS |
GTTGATCTTTGCAACACATC+CGG | 0.462591 | 3.2:-76284267 | None:intergenic |
ACTGGCAGGGCATGATCCCC+TGG | 0.467690 | 3.2:-76284056 | None:intergenic |
TGTACCTAATTCAAATCGGC+TGG | 0.473734 | 3.2:-76284696 | None:intergenic |
CTATGAATTTGTTGAATGAA+AGG | 0.476135 | 3.2:+76293913 | MS.gene81956:CDS |
CATGCCCTGCCAGTGTTCAC+AGG | 0.477691 | 3.2:+76284065 | MS.gene81956:CDS |
TTCTTAGGATCAACACTGAC+AGG | 0.485136 | 3.2:+76284141 | MS.gene81956:CDS |
ACCAGCTGCGGTTGCATGGG+AGG | 0.486050 | 3.2:+76283248 | MS.gene81956:CDS |
ATGGGAGGCGGGGAAGCCAC+TGG | 0.486618 | 3.2:+76283263 | MS.gene81956:CDS |
ACCAAAATTTAGGCTGCTGA+AGG | 0.497900 | 3.2:+76284626 | MS.gene81956:intron |
GGAACCAGCTGCGGTTGCAT+GGG | 0.505012 | 3.2:+76283245 | MS.gene81956:CDS |
AGTAGATGTGGCACCACCGC+AGG | 0.506193 | 3.2:+76283296 | MS.gene81956:CDS |
GTTGTAGAAAAGTACATGAA+AGG | 0.506752 | 3.2:+76293990 | MS.gene81956:CDS |
CTGGTTCCAAAACACAATCA+AGG | 0.509234 | 3.2:-76283230 | None:intergenic |
TCCAATGATTCTTGATGCAC+CGG | 0.509781 | 3.2:-76284660 | None:intergenic |
CCAAAATTTAGGCTGCTGAA+GGG | 0.515926 | 3.2:+76284627 | MS.gene81956:intron |
GTACCGACGAAATGATAAAT+GGG | 0.516638 | 3.2:-76284212 | None:intergenic |
AACATTAGGAAGATCAGTGC+GGG | 0.517924 | 3.2:-76293970 | None:intergenic |
GCATTGTACCTAATTCAAAT+CGG | 0.523873 | 3.2:-76284700 | None:intergenic |
CAGTGTTCACAGGGGAGTGT+GGG | 0.526107 | 3.2:+76284075 | MS.gene81956:CDS |
CTCTCCTCTGACTTACAATG+TGG | 0.529398 | 3.2:-76284104 | None:intergenic |
CTGCGGTTGCATGGGAGGCG+GGG | 0.533283 | 3.2:+76283253 | MS.gene81956:CDS |
CCAAATATTCTAGGAAACAA+TGG | 0.540108 | 3.2:-76283872 | None:intergenic |
CTCAGCTGTGGAATATGCAC+AGG | 0.542001 | 3.2:+76284320 | MS.gene81956:CDS |
TGTTTACTTCTGGGAAGCTA+AGG | 0.543162 | 3.2:+76283368 | MS.gene81956:CDS |
CACAATGTTGATCAGGATTG+TGG | 0.548924 | 3.2:+76284001 | MS.gene81956:intron |
CAACCCATTTATCATTTCGT+CGG | 0.549525 | 3.2:+76284209 | MS.gene81956:CDS |
CCACACTCCCCTGTGAACAC+TGG | 0.550623 | 3.2:-76284074 | None:intergenic |
AGTAAACATCAGTGTGACAA+AGG | 0.551878 | 3.2:-76283353 | None:intergenic |
AAAGTTTGTATTCTCAGCTG+TGG | 0.560671 | 3.2:+76284308 | MS.gene81956:CDS |
ATGCCCTGCCAGTGTTCACA+GGG | 0.569963 | 3.2:+76284066 | MS.gene81956:CDS |
TGAATGTACTGGGAGCGTCC+AGG | 0.577302 | 3.2:+76293703 | MS.gene81956:CDS |
GTAAACATCAGTGTGACAAA+GGG | 0.577816 | 3.2:-76283352 | None:intergenic |
GTGTGACTAATCTGAAACCA+GGG | 0.577827 | 3.2:+76284039 | MS.gene81956:CDS |
GATGTGGCACCACCGCAGGC+CGG | 0.577946 | 3.2:+76283300 | MS.gene81956:CDS |
CAAAATTTAGGCTGCTGAAG+GGG | 0.579040 | 3.2:+76284628 | MS.gene81956:intron |
TATCTTGAGACGGACTTCAC+CGG | 0.582479 | 3.2:-76283319 | None:intergenic |
TGGTTCCAAAACACAATCAA+GGG | 0.585807 | 3.2:-76283229 | None:intergenic |
GAGTACACTGTGGTTCATGC+CGG | 0.586769 | 3.2:+76284248 | MS.gene81956:CDS |
ATTGCTGAAATGACTAATGG+AGG | 0.589764 | 3.2:+76293665 | MS.gene81956:CDS |
TTTAGGCTGCTGAAGGGGCA+AGG | 0.589857 | 3.2:+76284633 | MS.gene81956:intron |
CCTTAATAGAGAATCTTGAC+TGG | 0.590298 | 3.2:-76284184 | None:intergenic |
GGTGTGACTAATCTGAAACC+AGG | 0.590607 | 3.2:+76284038 | MS.gene81956:CDS |
GTTGGCAGCTAAGAAGTTTG+GGG | 0.590624 | 3.2:+76293484 | MS.gene81956:intron |
GATTGTGGAGAGTGTAGGTG+AGG | 0.592687 | 3.2:+76284016 | MS.gene81956:CDS |
AGAATACAAACTTTGTCAAG+TGG | 0.596408 | 3.2:-76284299 | None:intergenic |
CTTTGTCAAGTGGTGCGTCA+GGG | 0.597350 | 3.2:-76284289 | None:intergenic |
CGAAAGCTGAGATCATAGCC+TGG | 0.605828 | 3.2:-76293721 | None:intergenic |
TTGCTGAAATGACTAATGGA+GGG | 0.607238 | 3.2:+76293666 | MS.gene81956:CDS |
ATCGTGCTGTTGAATGTACT+GGG | 0.609310 | 3.2:+76293693 | MS.gene81956:CDS |
CGGACTTCACCGGCCTGCGG+TGG | 0.612360 | 3.2:-76283309 | None:intergenic |
CATCAGATGTATCATCCGAA+TGG | 0.612483 | 3.2:+76294205 | MS.gene81956:CDS |
ACTTGGAGCTGTTGGCCTTG+CGG | 0.616948 | 3.2:+76284493 | MS.gene81956:CDS |
TGTAGAAAAGTACATGAAAG+GGG | 0.619536 | 3.2:+76293992 | MS.gene81956:CDS |
CTCCCCTGTGAACACTGGCA+GGG | 0.622511 | 3.2:-76284069 | None:intergenic |
CAGATGTATCATCCGAATGG+AGG | 0.627558 | 3.2:+76294208 | MS.gene81956:CDS |
AGACGGACTTCACCGGCCTG+CGG | 0.628272 | 3.2:-76283312 | None:intergenic |
TCTCCTCTGACTTACAATGT+GGG | 0.629740 | 3.2:-76284103 | None:intergenic |
ATATTTGGTCATGAAGCTGG+AGG | 0.631481 | 3.2:+76283887 | MS.gene81956:CDS |
AGTGTTCACAGGGGAGTGTG+GGG | 0.635095 | 3.2:+76284076 | MS.gene81956:CDS |
ATGCCCACATTGTAAGTCAG+AGG | 0.639191 | 3.2:+76284100 | MS.gene81956:CDS |
AACATCAGTGTGACAAAGGG+AGG | 0.641785 | 3.2:-76283349 | None:intergenic |
AGGTGAAGAGTATCTTGAGA+CGG | 0.642729 | 3.2:-76283329 | None:intergenic |
TCTTAGGATCAACACTGACA+GGG | 0.645688 | 3.2:+76284142 | MS.gene81956:CDS |
ATCAGGATTGTGGAGAGTGT+AGG | 0.653420 | 3.2:+76284011 | MS.gene81956:intron |
TATTTGGTCATGAAGCTGGA+GGG | 0.656045 | 3.2:+76283888 | MS.gene81956:CDS |
TCTACTTCTTCCATCACCAG+TGG | 0.659374 | 3.2:-76283279 | None:intergenic |
ATTGTGGAGAGTGTAGGTGA+GGG | 0.662015 | 3.2:+76284017 | MS.gene81956:CDS |
TGCTGAAATGACTAATGGAG+GGG | 0.663023 | 3.2:+76293667 | MS.gene81956:CDS |
AAGATAGCAACAGATGAACC+GGG | 0.667433 | 3.2:-76284467 | None:intergenic |
CTTAGGATCAACACTGACAG+GGG | 0.684115 | 3.2:+76284143 | MS.gene81956:CDS |
AATGTTGCTAAACCAAAACC+CGG | 0.696734 | 3.2:+76284449 | MS.gene81956:CDS |
TGAAATGACTAATGGAGGGG+TGG | 0.702939 | 3.2:+76293670 | MS.gene81956:CDS |
GGTGATGGAAGAAGTAGATG+TGG | 0.706146 | 3.2:+76283284 | MS.gene81956:CDS |
CAACATTAGGAAGATCAGTG+CGG | 0.707517 | 3.2:-76293971 | None:intergenic |
ACATTAGGAAGATCAGTGCG+GGG | 0.718262 | 3.2:-76293969 | None:intergenic |
TGTGACTAATCTGAAACCAG+GGG | 0.722750 | 3.2:+76284040 | MS.gene81956:CDS |
TGCCCTGCCAGTGTTCACAG+GGG | 0.747042 | 3.2:+76284067 | MS.gene81956:CDS |
TACATTCAGCGAGTACACTG+TGG | 0.749330 | 3.2:+76284238 | MS.gene81956:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr3.2 | gene | 76283195 | 76294235 | 76283195 | ID=MS.gene81956 |
chr3.2 | mRNA | 76283195 | 76294235 | 76283195 | ID=MS.gene81956.t1;Parent=MS.gene81956 |
chr3.2 | exon | 76283195 | 76283389 | 76283195 | ID=MS.gene81956.t1.exon1;Parent=MS.gene81956.t1 |
chr3.2 | CDS | 76283195 | 76283389 | 76283195 | ID=cds.MS.gene81956.t1;Parent=MS.gene81956.t1 |
chr3.2 | exon | 76283863 | 76283909 | 76283863 | ID=MS.gene81956.t1.exon2;Parent=MS.gene81956.t1 |
chr3.2 | CDS | 76283863 | 76283909 | 76283863 | ID=cds.MS.gene81956.t1;Parent=MS.gene81956.t1 |
chr3.2 | exon | 76284016 | 76284341 | 76284016 | ID=MS.gene81956.t1.exon3;Parent=MS.gene81956.t1 |
chr3.2 | CDS | 76284016 | 76284341 | 76284016 | ID=cds.MS.gene81956.t1;Parent=MS.gene81956.t1 |
chr3.2 | exon | 76284432 | 76284514 | 76284432 | ID=MS.gene81956.t1.exon4;Parent=MS.gene81956.t1 |
chr3.2 | CDS | 76284432 | 76284514 | 76284432 | ID=cds.MS.gene81956.t1;Parent=MS.gene81956.t1 |
chr3.2 | exon | 76284638 | 76284713 | 76284638 | ID=MS.gene81956.t1.exon5;Parent=MS.gene81956.t1 |
chr3.2 | CDS | 76284638 | 76284713 | 76284638 | ID=cds.MS.gene81956.t1;Parent=MS.gene81956.t1 |
chr3.2 | exon | 76293492 | 76293553 | 76293492 | ID=MS.gene81956.t1.exon6;Parent=MS.gene81956.t1 |
chr3.2 | CDS | 76293492 | 76293553 | 76293492 | ID=cds.MS.gene81956.t1;Parent=MS.gene81956.t1 |
chr3.2 | exon | 76293662 | 76293757 | 76293662 | ID=MS.gene81956.t1.exon7;Parent=MS.gene81956.t1 |
chr3.2 | CDS | 76293662 | 76293757 | 76293662 | ID=cds.MS.gene81956.t1;Parent=MS.gene81956.t1 |
chr3.2 | exon | 76293852 | 76294013 | 76293852 | ID=MS.gene81956.t1.exon8;Parent=MS.gene81956.t1 |
chr3.2 | CDS | 76293852 | 76294013 | 76293852 | ID=cds.MS.gene81956.t1;Parent=MS.gene81956.t1 |
chr3.2 | exon | 76294119 | 76294235 | 76294119 | ID=MS.gene81956.t1.exon9;Parent=MS.gene81956.t1 |
chr3.2 | CDS | 76294119 | 76294235 | 76294119 | ID=cds.MS.gene81956.t1;Parent=MS.gene81956.t1 |
Gene Sequence |
Protein sequence |