Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene33522.t1 | XP_013461377.1 | 98.4 | 380 | 6 | 0 | 1 | 380 | 1 | 380 | 2.10E-220 | 774.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene33522.t1 | P12886 | 95.5 | 380 | 17 | 0 | 1 | 380 | 1 | 380 | 8.3e-218 | 757.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene33522.t1 | A0A072V0U2 | 98.4 | 380 | 6 | 0 | 1 | 380 | 1 | 380 | 1.5e-220 | 774.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049137 | MS.gene33522 | -0.819174 | 1.33E-52 | -1.69E-46 |
| MS.gene050747 | MS.gene33522 | -0.814906 | 1.21E-51 | -1.69E-46 |
| MS.gene050950 | MS.gene33522 | -0.807879 | 4.07E-50 | -1.69E-46 |
| MS.gene051387 | MS.gene33522 | -0.819774 | 9.74E-53 | -1.69E-46 |
| MS.gene051525 | MS.gene33522 | -0.805601 | 1.23E-49 | -1.69E-46 |
| MS.gene051694 | MS.gene33522 | -0.805453 | 1.33E-49 | -1.69E-46 |
| MS.gene052128 | MS.gene33522 | 0.806078 | 9.80E-50 | -1.69E-46 |
| MS.gene053421 | MS.gene33522 | 0.835929 | 1.26E-56 | -1.69E-46 |
| MS.gene053873 | MS.gene33522 | -0.853075 | 3.04E-61 | -1.69E-46 |
| MS.gene055157 | MS.gene33522 | 0.809832 | 1.56E-50 | -1.69E-46 |
| MS.gene055158 | MS.gene33522 | 0.809806 | 1.58E-50 | -1.69E-46 |
| MS.gene055159 | MS.gene33522 | 0.823882 | 1.09E-53 | -1.69E-46 |
| MS.gene056514 | MS.gene33522 | -0.832366 | 9.85E-56 | -1.69E-46 |
| MS.gene056647 | MS.gene33522 | 0.813284 | 2.77E-51 | -1.69E-46 |
| MS.gene057506 | MS.gene33522 | 0.802448 | 5.58E-49 | -1.69E-46 |
| MS.gene058170 | MS.gene33522 | 0.807964 | 3.91E-50 | -1.69E-46 |
| MS.gene058174 | MS.gene33522 | 0.812386 | 4.35E-51 | -1.69E-46 |
| MS.gene058376 | MS.gene33522 | -0.803799 | 2.93E-49 | -1.69E-46 |
| MS.gene058700 | MS.gene33522 | -0.810807 | 9.59E-51 | -1.69E-46 |
| MS.gene059046 | MS.gene33522 | 0.821803 | 3.32E-53 | -1.69E-46 |
| MS.gene059303 | MS.gene33522 | -0.806661 | 7.38E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene010354 | MS.gene33522 | PPI |
| MS.gene069033 | MS.gene33522 | PPI |
| MS.gene33522 | MS.gene042841 | PPI |
| MS.gene33522 | MS.gene73688 | PPI |
| MS.gene33522 | MS.gene49741 | PPI |
| MS.gene33522 | MS.gene011817 | PPI |
| MS.gene33522 | MS.gene95648 | PPI |
| MS.gene33522 | MS.gene000485 | PPI |
| MS.gene33522 | MS.gene70056 | PPI |
| MS.gene33522 | MS.gene79768 | PPI |
| MS.gene037523 | MS.gene33522 | PPI |
| MS.gene047628 | MS.gene33522 | PPI |
| MS.gene99200 | MS.gene33522 | PPI |
| MS.gene56778 | MS.gene33522 | PPI |
| MS.gene33522 | MS.gene83309 | PPI |
| MS.gene33522 | MS.gene77397 | PPI |
| MS.gene041083 | MS.gene33522 | PPI |
| MS.gene33522 | MS.gene77398 | PPI |
| MS.gene33522 | MS.gene90510 | PPI |
| MS.gene015154 | MS.gene33522 | PPI |
| MS.gene33522 | MS.gene000484 | PPI |
| MS.gene50792 | MS.gene33522 | PPI |
| MS.gene33522 | MS.gene95649 | PPI |
| MS.gene030545 | MS.gene33522 | PPI |
| MS.gene33522 | MS.gene70145 | PPI |
| MS.gene33522 | MS.gene069804 | PPI |
| MS.gene33522 | MS.gene89779 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene33522.t1 | MTR_3g089977 | 98.421 | 380 | 6 | 0 | 1 | 380 | 1 | 380 | 0.0 | 778 |
| MS.gene33522.t1 | MTR_3g089940 | 97.632 | 380 | 9 | 0 | 1 | 380 | 1 | 380 | 0.0 | 771 |
| MS.gene33522.t1 | MTR_3g089940 | 97.632 | 380 | 9 | 0 | 1 | 380 | 1 | 380 | 0.0 | 770 |
| MS.gene33522.t1 | MTR_3g089970 | 96.063 | 381 | 14 | 1 | 1 | 380 | 1 | 381 | 0.0 | 755 |
| MS.gene33522.t1 | MTR_3g089940 | 97.661 | 342 | 8 | 0 | 1 | 342 | 1 | 342 | 0.0 | 696 |
| MS.gene33522.t1 | MTR_3g089940 | 97.661 | 342 | 8 | 0 | 1 | 342 | 1 | 342 | 0.0 | 694 |
| MS.gene33522.t1 | MTR_7g099040 | 58.355 | 377 | 157 | 0 | 2 | 378 | 3 | 379 | 1.74e-170 | 481 |
| MS.gene33522.t1 | MTR_1g069430 | 56.533 | 375 | 163 | 0 | 4 | 378 | 3 | 377 | 1.80e-164 | 466 |
| MS.gene33522.t1 | MTR_6g068930 | 50.928 | 377 | 181 | 2 | 2 | 378 | 3 | 375 | 2.81e-142 | 409 |
| MS.gene33522.t1 | MTR_7g068320 | 48.564 | 383 | 191 | 5 | 1 | 378 | 12 | 393 | 2.73e-127 | 372 |
| MS.gene33522.t1 | MTR_7g068330 | 48.556 | 381 | 191 | 4 | 2 | 378 | 6 | 385 | 5.96e-127 | 370 |
| MS.gene33522.t1 | MTR_3g099460 | 49.735 | 378 | 184 | 4 | 6 | 378 | 13 | 389 | 1.11e-120 | 355 |
| MS.gene33522.t1 | MTR_5g087710 | 45.187 | 374 | 203 | 2 | 7 | 378 | 16 | 389 | 1.17e-119 | 352 |
| MS.gene33522.t1 | MTR_3g099460 | 49.206 | 378 | 179 | 5 | 6 | 378 | 13 | 382 | 1.92e-116 | 343 |
| MS.gene33522.t1 | MTR_3g079180 | 42.744 | 379 | 215 | 2 | 2 | 378 | 6 | 384 | 9.83e-110 | 327 |
| MS.gene33522.t1 | MTR_3g099460 | 49.221 | 321 | 159 | 3 | 61 | 378 | 7 | 326 | 9.91e-97 | 291 |
| MS.gene33522.t1 | MTR_0001s0660 | 39.523 | 377 | 218 | 5 | 5 | 378 | 4 | 373 | 6.83e-90 | 278 |
| MS.gene33522.t1 | MTR_5g045710 | 39.474 | 380 | 222 | 6 | 1 | 378 | 1 | 374 | 7.02e-90 | 275 |
| MS.gene33522.t1 | MTR_3g099460 | 51.943 | 283 | 130 | 4 | 6 | 283 | 13 | 294 | 7.00e-85 | 261 |
| MS.gene33522.t1 | MTR_3g099460 | 51.237 | 283 | 125 | 5 | 6 | 283 | 13 | 287 | 1.05e-80 | 250 |
| MS.gene33522.t1 | MTR_3g079170 | 41.818 | 275 | 138 | 4 | 101 | 370 | 25 | 282 | 4.75e-69 | 219 |
| MS.gene33522.t1 | MTR_5g045710 | 37.075 | 294 | 181 | 3 | 86 | 378 | 1 | 291 | 2.21e-62 | 202 |
| MS.gene33522.t1 | MTR_8g095220 | 31.579 | 380 | 237 | 15 | 12 | 378 | 55 | 424 | 7.20e-45 | 160 |
| MS.gene33522.t1 | MTR_8g095220 | 31.250 | 256 | 162 | 8 | 12 | 258 | 55 | 305 | 1.27e-31 | 122 |
| MS.gene33522.t1 | MTR_6g465010 | 25.405 | 370 | 224 | 13 | 16 | 369 | 3 | 336 | 5.44e-22 | 96.3 |
| MS.gene33522.t1 | MTR_6g466320 | 25.405 | 370 | 224 | 13 | 16 | 369 | 19 | 352 | 5.87e-22 | 96.3 |
| MS.gene33522.t1 | MTR_6g465010 | 25.405 | 370 | 224 | 13 | 16 | 369 | 19 | 352 | 5.87e-22 | 96.3 |
| MS.gene33522.t1 | MTR_5g031190 | 23.810 | 378 | 244 | 15 | 12 | 379 | 11 | 354 | 8.73e-14 | 72.4 |
| MS.gene33522.t1 | MTR_4g115300 | 26.000 | 350 | 218 | 11 | 37 | 379 | 39 | 354 | 3.34e-13 | 70.5 |
| MS.gene33522.t1 | MTR_5g031390 | 24.642 | 349 | 224 | 10 | 37 | 379 | 39 | 354 | 4.08e-13 | 70.5 |
| MS.gene33522.t1 | MTR_5g031230 | 23.782 | 349 | 227 | 11 | 37 | 379 | 39 | 354 | 7.13e-12 | 66.6 |
| MS.gene33522.t1 | MTR_5g031210 | 24.566 | 346 | 228 | 11 | 37 | 379 | 39 | 354 | 1.42e-11 | 65.5 |
| MS.gene33522.t1 | MTR_5g031360 | 22.767 | 347 | 233 | 9 | 37 | 379 | 41 | 356 | 4.55e-11 | 63.9 |
| MS.gene33522.t1 | MTR_5g031250 | 22.478 | 347 | 234 | 11 | 37 | 379 | 39 | 354 | 5.31e-11 | 63.9 |
| MS.gene33522.t1 | MTR_5g031180 | 23.262 | 374 | 251 | 13 | 12 | 379 | 11 | 354 | 6.19e-11 | 63.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene33522.t1 | AT1G77120 | 84.350 | 377 | 59 | 0 | 3 | 379 | 2 | 378 | 0.0 | 675 |
| MS.gene33522.t1 | AT5G43940 | 58.713 | 373 | 154 | 0 | 4 | 376 | 3 | 375 | 1.63e-168 | 476 |
| MS.gene33522.t1 | AT5G43940 | 56.623 | 385 | 155 | 1 | 4 | 376 | 3 | 387 | 2.55e-164 | 466 |
| MS.gene33522.t1 | AT5G24760 | 52.151 | 372 | 174 | 2 | 7 | 378 | 12 | 379 | 5.26e-147 | 421 |
| MS.gene33522.t1 | AT1G64710 | 49.206 | 378 | 189 | 2 | 4 | 378 | 3 | 380 | 3.83e-141 | 406 |
| MS.gene33522.t1 | AT1G32780 | 49.487 | 390 | 187 | 2 | 1 | 380 | 1 | 390 | 5.02e-141 | 407 |
| MS.gene33522.t1 | AT5G24760 | 51.130 | 354 | 169 | 2 | 25 | 378 | 1 | 350 | 3.67e-136 | 392 |
| MS.gene33522.t1 | AT5G24760 | 51.130 | 354 | 169 | 2 | 25 | 378 | 1 | 350 | 3.67e-136 | 392 |
| MS.gene33522.t1 | AT1G64710 | 48.179 | 357 | 182 | 2 | 25 | 378 | 1 | 357 | 1.77e-129 | 376 |
| MS.gene33522.t1 | AT5G42250 | 46.524 | 374 | 197 | 3 | 9 | 379 | 17 | 390 | 4.16e-120 | 353 |
| MS.gene33522.t1 | AT1G22440 | 48.831 | 385 | 184 | 6 | 2 | 378 | 5 | 384 | 3.23e-118 | 348 |
| MS.gene33522.t1 | AT1G22430 | 46.719 | 381 | 200 | 3 | 1 | 378 | 6 | 386 | 7.85e-116 | 342 |
| MS.gene33522.t1 | AT1G22430 | 46.719 | 381 | 200 | 3 | 1 | 378 | 6 | 386 | 7.85e-116 | 342 |
| MS.gene33522.t1 | AT4G22110 | 46.719 | 381 | 194 | 4 | 6 | 380 | 12 | 389 | 1.26e-113 | 337 |
| MS.gene33522.t1 | AT4G22110 | 46.719 | 381 | 194 | 4 | 6 | 380 | 12 | 389 | 1.26e-113 | 337 |
| MS.gene33522.t1 | AT1G64710 | 47.059 | 306 | 160 | 1 | 75 | 378 | 6 | 311 | 3.99e-107 | 317 |
| MS.gene33522.t1 | AT5G24760 | 47.368 | 266 | 139 | 1 | 113 | 378 | 1 | 265 | 2.40e-92 | 278 |
| MS.gene33522.t1 | AT1G22430 | 50.000 | 286 | 140 | 3 | 1 | 283 | 6 | 291 | 8.43e-90 | 273 |
| MS.gene33522.t1 | AT1G22430 | 51.406 | 249 | 119 | 2 | 1 | 247 | 6 | 254 | 2.99e-81 | 251 |
| MS.gene33522.t1 | AT1G22430 | 51.406 | 249 | 119 | 2 | 1 | 247 | 6 | 254 | 2.99e-81 | 251 |
| MS.gene33522.t1 | AT4G22110 | 51.626 | 246 | 111 | 3 | 6 | 246 | 12 | 254 | 6.58e-77 | 239 |
| MS.gene33522.t1 | AT5G63620 | 31.016 | 374 | 234 | 14 | 12 | 372 | 57 | 419 | 1.45e-40 | 149 |
| MS.gene33522.t1 | AT5G63620 | 30.376 | 372 | 239 | 12 | 12 | 372 | 57 | 419 | 4.27e-40 | 147 |
| MS.gene33522.t1 | AT5G63620 | 30.800 | 250 | 158 | 8 | 12 | 251 | 57 | 301 | 5.43e-28 | 112 |
| MS.gene33522.t1 | AT5G51970 | 23.454 | 388 | 243 | 14 | 1 | 371 | 6 | 356 | 1.59e-17 | 83.6 |
| MS.gene33522.t1 | AT5G51970 | 23.454 | 388 | 243 | 14 | 1 | 371 | 6 | 356 | 1.59e-17 | 83.6 |
| MS.gene33522.t1 | AT1G72680 | 25.223 | 337 | 217 | 9 | 37 | 370 | 37 | 341 | 1.41e-13 | 71.6 |
| MS.gene33522.t1 | AT4G37990 | 24.444 | 315 | 207 | 8 | 37 | 346 | 35 | 323 | 4.40e-12 | 67.4 |
Find 120 sgRNAs with CRISPR-Local
Find 191 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAGGTTTGTCATGATCTTTC+GGG | 0.232230 | 3.3:+75522779 | None:intergenic |
| GGTTCATCTGTTGCTATCTT+TGG | 0.236969 | 3.3:-75523162 | MS.gene33522:CDS |
| GCTTTGTTAATCTCTGAAAA+TGG | 0.242441 | 3.3:+75522133 | None:intergenic |
| GTTTCCAGCCGATATGAATT+AGG | 0.257110 | 3.3:-75522940 | MS.gene33522:intron |
| GTCACACTGATGTTTACTTC+TGG | 0.274790 | 3.3:-75524042 | MS.gene33522:CDS |
| TTGTTGGCAGCTAAGAAGTT+TGG | 0.287505 | 3.3:-75522820 | MS.gene33522:intron |
| CCATTGTTTCCTCGTATATT+TGG | 0.294860 | 3.3:-75523800 | MS.gene33522:CDS |
| ACAGGTTTGTCATGATCTTT+CGG | 0.301321 | 3.3:+75522778 | None:intergenic |
| GCAACAGATGAACCGGGTTT+TGG | 0.302998 | 3.3:+75523171 | None:intergenic |
| TCAGTCAAGATTCTCTATTA+AGG | 0.310729 | 3.3:-75523448 | MS.gene33522:CDS |
| GCAACATGTGTGATCTTCTT+AGG | 0.311495 | 3.3:-75523506 | MS.gene33522:CDS |
| TGTTGGCAGCTAAGAAGTTT+GGG | 0.311983 | 3.3:-75522819 | MS.gene33522:intron |
| GCTGAAGGGGCAAGGATGTC+TGG | 0.323064 | 3.3:-75522991 | MS.gene33522:CDS |
| TGGGGTGTTGCTGTACTTGT+TGG | 0.336473 | 3.3:-75522433 | MS.gene33522:CDS |
| GTTGAATGAAAGGACTCTTA+AGG | 0.347627 | 3.3:-75522365 | MS.gene33522:CDS |
| CTTTCATTCAACAAATTCAT+AGG | 0.348960 | 3.3:+75522376 | None:intergenic |
| ATCTTTGGACTTGGAGCTGT+TGG | 0.351212 | 3.3:-75523147 | MS.gene33522:CDS |
| TTGAATGAAAGGACTCTTAA+GGG | 0.375052 | 3.3:-75522364 | MS.gene33522:CDS |
| GTTGAACTAACTTGTTGAAC+AGG | 0.390252 | 3.3:+75522760 | None:intergenic |
| ACTTTGTCAAGAGGTGCATC+AGG | 0.391287 | 3.3:+75523342 | None:intergenic |
| GCTGCGGTTGCATGGGAGGC+GGG | 0.399452 | 3.3:-75524148 | MS.gene33522:CDS |
| TCACACTGATGTTTACTTCT+GGG | 0.404127 | 3.3:-75524041 | MS.gene33522:CDS |
| GGCGGGGAAGCCACTGGTGA+TGG | 0.404743 | 3.3:-75524131 | MS.gene33522:CDS |
| AAAGATAGCAACAGATGAAC+CGG | 0.416086 | 3.3:+75523164 | None:intergenic |
| TGGAACCAGCTGCGGTTGCA+TGG | 0.416145 | 3.3:-75524156 | MS.gene33522:intron |
| TGAAATGCATCGTCTTTGTT+TGG | 0.418800 | 3.3:+75522406 | None:intergenic |
| TCTGTTGCTATCTTTGGACT+TGG | 0.419387 | 3.3:-75523156 | MS.gene33522:CDS |
| GATATTACAGGAACTGGAAC+TGG | 0.426601 | 3.3:-75522179 | MS.gene33522:intron |
| CAGTCAAGATTCTCTATTAA+GGG | 0.430904 | 3.3:-75523447 | MS.gene33522:CDS |
| CGTATATTTGGTCATGAAGC+TGG | 0.431276 | 3.3:-75523788 | MS.gene33522:CDS |
| AGCTGCGGTTGCATGGGAGG+CGG | 0.441799 | 3.3:-75524149 | MS.gene33522:CDS |
| ATCAGATGTATCATACGAAT+GGG | 0.445545 | 3.3:-75522082 | MS.gene33522:CDS |
| TTGTAGAAAAGTACATGAAA+GGG | 0.453615 | 3.3:-75522297 | MS.gene33522:CDS |
| TCTGGTGCATCAAGAATCAT+TGG | 0.470218 | 3.3:-75522973 | MS.gene33522:CDS |
| CCACACTCCCCTGTGAATAC+AGG | 0.474104 | 3.3:+75523558 | None:intergenic |
| CCTGTATTCACAGGGGAGTG+TGG | 0.474817 | 3.3:-75523558 | MS.gene33522:CDS |
| CTATGAATTTGTTGAATGAA+AGG | 0.476135 | 3.3:-75522375 | MS.gene33522:CDS |
| CATGCCCTGCCTGTATTCAC+AGG | 0.480140 | 3.3:-75523567 | MS.gene33522:CDS |
| ACAGGCAGGGCATGATCCCC+TGG | 0.483648 | 3.3:+75523576 | None:intergenic |
| CTGTATTCACAGGGGAGTGT+GGG | 0.483700 | 3.3:-75523557 | MS.gene33522:CDS |
| ACCAGCTGCGGTTGCATGGG+AGG | 0.486050 | 3.3:-75524152 | MS.gene33522:intron |
| ATGGGAGGCGGGGAAGCCAC+TGG | 0.486618 | 3.3:-75524137 | MS.gene33522:CDS |
| TGTACCTAATTCATATCGGC+TGG | 0.489612 | 3.3:+75522936 | None:intergenic |
| ACCAAAATTTAGGCTGCTGA+AGG | 0.497900 | 3.3:-75523006 | MS.gene33522:intron |
| TTCTTAGGATCAACACGGAC+AGG | 0.502318 | 3.3:-75523491 | MS.gene33522:CDS |
| TTAACCATGTCCAACACTGC+TGG | 0.504696 | 3.3:-75524518 | None:intergenic |
| GGAACCAGCTGCGGTTGCAT+GGG | 0.505012 | 3.3:-75524155 | MS.gene33522:intron |
| GCATTGTACCTAATTCATAT+CGG | 0.505878 | 3.3:+75522932 | None:intergenic |
| GTTGTAGAAAAGTACATGAA+AGG | 0.509192 | 3.3:-75522298 | MS.gene33522:CDS |
| AACCTTAGGAAGATCAGTGC+GGG | 0.515441 | 3.3:+75522318 | None:intergenic |
| CCAAAATTTAGGCTGCTGAA+GGG | 0.515926 | 3.3:-75523005 | MS.gene33522:intron |
| ATGTAGATGTACCGACGAAA+TGG | 0.519367 | 3.3:+75523412 | None:intergenic |
| CATTCGTATGATACATCTGA+TGG | 0.531716 | 3.3:+75522084 | None:intergenic |
| CTGCGGTTGCATGGGAGGCG+GGG | 0.533283 | 3.3:-75524147 | MS.gene33522:CDS |
| CTCAGCTGTGGAATATGCAC+AGG | 0.542001 | 3.3:-75523312 | MS.gene33522:intron |
| TGTTTACTTCTGGGAAGCTA+AGG | 0.543162 | 3.3:-75524032 | MS.gene33522:intron |
| AGACGGACTTCACCGGCTTG+TGG | 0.546092 | 3.3:+75524088 | None:intergenic |
| CATCAGATGTATCATACGAA+TGG | 0.550987 | 3.3:-75522083 | MS.gene33522:CDS |
| AGTAAACATCAGTGTGACAA+AGG | 0.551878 | 3.3:+75524047 | None:intergenic |
| TCTAATGTCGATCAGGATTG+TGG | 0.553261 | 3.3:-75523631 | MS.gene33522:intron |
| GTACCGACGAAATGGTGAAT+CGG | 0.555313 | 3.3:+75523420 | None:intergenic |
| AAAGTTTGTATTCTCAGCTG+TGG | 0.560671 | 3.3:-75523324 | MS.gene33522:CDS |
| GTTGGCAGCTAAGAAGTTTG+GGG | 0.561606 | 3.3:-75522818 | MS.gene33522:intron |
| TATCTTGAGACGGACTTCAC+CGG | 0.564597 | 3.3:+75524081 | None:intergenic |
| TGAATGTACCGGTAGCATCC+AGG | 0.564756 | 3.3:-75522589 | MS.gene33522:CDS |
| GATCATAGCCTGGATGCTAC+CGG | 0.570554 | 3.3:+75522581 | None:intergenic |
| GGTGTGACAGATCTAAAACC+AGG | 0.572762 | 3.3:-75523594 | MS.gene33522:CDS |
| GTAAACATCAGTGTGACAAA+GGG | 0.577816 | 3.3:+75524048 | None:intergenic |
| ACCCCGCACTGATCTTCCTA+AGG | 0.578506 | 3.3:-75522320 | MS.gene33522:CDS |
| CAAAATTTAGGCTGCTGAAG+GGG | 0.579040 | 3.3:-75523004 | MS.gene33522:intron |
| ACTCCCCTGTGAATACAGGC+AGG | 0.579461 | 3.3:+75523562 | None:intergenic |
| GAGTACACTGTGGTTCATGC+CGG | 0.586769 | 3.3:-75523384 | MS.gene33522:CDS |
| AGAATACAAACTTTGTCAAG+AGG | 0.589584 | 3.3:+75523333 | None:intergenic |
| TTTAGGCTGCTGAAGGGGCA+AGG | 0.589857 | 3.3:-75522999 | MS.gene33522:intron |
| CCAAATATACGAGGAAACAA+TGG | 0.590862 | 3.3:+75523800 | None:intergenic |
| TGTATTCACAGGGGAGTGTG+GGG | 0.591767 | 3.3:-75523556 | MS.gene33522:CDS |
| GATTGTGGAGAGCGTAGGCG+AGG | 0.594735 | 3.3:-75523616 | MS.gene33522:CDS |
| TCTTAGGATCAACACGGACA+GGG | 0.595918 | 3.3:-75523490 | MS.gene33522:CDS |
| GAGGTGGCGCCACCACAAGC+CGG | 0.602446 | 3.3:-75524100 | MS.gene33522:CDS |
| GATGATCTGACCAGCAGTGT+TGG | 0.604173 | 3.3:+75524508 | None:intergenic |
| TGTAGAAAAGTACATGAAAG+GGG | 0.605963 | 3.3:-75522296 | MS.gene33522:intron |
| CTTTGTCAAGAGGTGCATCA+GGG | 0.608085 | 3.3:+75523343 | None:intergenic |
| GTGTGACAGATCTAAAACCA+GGG | 0.609191 | 3.3:-75523593 | MS.gene33522:CDS |
| CGAATGCGGAGATCATAGCC+TGG | 0.612238 | 3.3:+75522571 | None:intergenic |
| ACTGGTGATGGAAGAAGTAG+AGG | 0.612676 | 3.3:-75524119 | MS.gene33522:CDS |
| ACTTGGAGCTGTTGGCCTTG+CGG | 0.616948 | 3.3:-75523139 | MS.gene33522:intron |
| TCTACTTCTTCCATCACCAG+TGG | 0.617716 | 3.3:+75524121 | None:intergenic |
| CGGACTTCACCGGCTTGTGG+TGG | 0.618100 | 3.3:+75524091 | None:intergenic |
| CTGTCCACATTGTAAGTCAG+AGG | 0.618115 | 3.3:-75523532 | MS.gene33522:CDS |
| AGCACGATCCACACCTCCGT+TGG | 0.619268 | 3.3:+75522614 | None:intergenic |
| CAGCCGATTCACCATTTCGT+CGG | 0.625858 | 3.3:-75523423 | MS.gene33522:CDS |
| ATCGTGGACACATTCGAATG+CGG | 0.633600 | 3.3:+75522557 | None:intergenic |
| CTCTCCTCTGACTTACAATG+TGG | 0.634714 | 3.3:+75523528 | None:intergenic |
| GATCGTGCTGTTGAATGTAC+CGG | 0.639046 | 3.3:-75522600 | MS.gene33522:CDS |
| ATATTTGGTCATGAAGCTGG+AGG | 0.639817 | 3.3:-75523785 | MS.gene33522:CDS |
| ATGCCCTGCCTGTATTCACA+GGG | 0.640094 | 3.3:-75523566 | MS.gene33522:CDS |
| AACATCAGTGTGACAAAGGG+AGG | 0.641785 | 3.3:+75524051 | None:intergenic |
| AGGTGAAGAGTATCTTGAGA+CGG | 0.642729 | 3.3:+75524071 | None:intergenic |
| TCAGATGTATCATACGAATG+GGG | 0.645185 | 3.3:-75522081 | MS.gene33522:CDS |
| GGTCAGATCATCAAGTGTAG+AGG | 0.647505 | 3.3:-75524497 | MS.gene33522:intron |
| CAGATGTATCATACGAATGG+GGG | 0.655213 | 3.3:-75522080 | MS.gene33522:CDS |
| CTGACCAGCAGTGTTGGACA+TGG | 0.657057 | 3.3:+75524514 | None:intergenic |
| ATCAGGATTGTGGAGAGCGT+AGG | 0.659938 | 3.3:-75523621 | MS.gene33522:intron |
| TATTTGGTCATGAAGCTGGA+GGG | 0.661233 | 3.3:-75523784 | MS.gene33522:intron |
| CTTAGGATCAACACGGACAG+GGG | 0.662424 | 3.3:-75523489 | MS.gene33522:CDS |
| ATTGTGGAGAGCGTAGGCGA+GGG | 0.662603 | 3.3:-75523615 | MS.gene33522:CDS |
| AAGATAGCAACAGATGAACC+GGG | 0.667433 | 3.3:+75523165 | None:intergenic |
| GGTGATGGAAGAAGTAGAGG+TGG | 0.673070 | 3.3:-75524116 | MS.gene33522:CDS |
| CTCCCCTGTGAATACAGGCA+GGG | 0.674123 | 3.3:+75523563 | None:intergenic |
| AATGTTGCTAAACCAAAACC+CGG | 0.674195 | 3.3:-75523183 | MS.gene33522:CDS |
| TGAAATGACCAACGGAGGTG+TGG | 0.677840 | 3.3:-75522622 | MS.gene33522:CDS |
| GTAATTGCTGAAATGACCAA+CGG | 0.682154 | 3.3:-75522630 | MS.gene33522:CDS |
| ACCTTAGGAAGATCAGTGCG+GGG | 0.690568 | 3.3:+75522319 | None:intergenic |
| CAACCTTAGGAAGATCAGTG+CGG | 0.707330 | 3.3:+75522317 | None:intergenic |
| TGTGACAGATCTAAAACCAG+GGG | 0.720106 | 3.3:-75523592 | MS.gene33522:CDS |
| GCTTCATGACCAAATATACG+AGG | 0.725898 | 3.3:+75523791 | None:intergenic |
| TGCCCTGCCTGTATTCACAG+GGG | 0.737931 | 3.3:-75523565 | MS.gene33522:CDS |
| TGATCTTCTTAGGATCAACA+CGG | 0.743683 | 3.3:-75523496 | MS.gene33522:CDS |
| ATTGCTGAAATGACCAACGG+AGG | 0.744796 | 3.3:-75522627 | MS.gene33522:CDS |
| TACATTCAGCGAGTACACTG+TGG | 0.749330 | 3.3:-75523394 | MS.gene33522:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ACTTAAAATTAATTTATAGT+TGG | + | chr3.3:75522217-75522236 | None:intergenic | 10.0% |
| !! | ATATATTAATATCTAAACAT+TGG | + | chr3.3:75523312-75523331 | None:intergenic | 10.0% |
| !!! | TAATTTTAGTTACAAAATAT+TGG | - | chr3.3:75522656-75522675 | MS.gene33522:intron | 10.0% |
| !!! | TTTTTTTTAAACCAAAATTT+AGG | - | chr3.3:75523571-75523590 | MS.gene33522:CDS | 10.0% |
| !! | AAAACAAATAACAATCTAAA+TGG | + | chr3.3:75522183-75522202 | None:intergenic | 15.0% |
| !! | AGATATTAATATATGTTTCT+AGG | - | chr3.3:75523318-75523337 | MS.gene33522:CDS | 15.0% |
| !! | ATTTATGTATAATTCTTCTT+AGG | - | chr3.3:75522631-75522650 | MS.gene33522:CDS | 15.0% |
| !! | TTGTAAATTGCAATTATTAT+CGG | - | chr3.3:75523517-75523536 | MS.gene33522:CDS | 15.0% |
| !! | AGAATTTGAGAAAAAATAGA+TGG | + | chr3.3:75522118-75522137 | None:intergenic | 20.0% |
| !! | CGAAAAATTATTATCAATGT+CGG | - | chr3.3:75522332-75522351 | MS.gene33522:CDS | 20.0% |
| !!! | ATGAATGTTATTGATAATTG+TGG | - | chr3.3:75522932-75522951 | MS.gene33522:intron | 20.0% |
| !!! | TCTCTTATTTTTTTTCTTGT+TGG | - | chr3.3:75523751-75523770 | MS.gene33522:intron | 20.0% |
| !!! | TGAATGTTATTGATAATTGT+GGG | - | chr3.3:75522933-75522952 | MS.gene33522:intron | 20.0% |
| !!! | TTGACTTTTTGTTTTTCTAA+GGG | - | chr3.3:75524130-75524149 | MS.gene33522:CDS | 20.0% |
| ! | ATTGCAATTATTATCGGAAA+TGG | - | chr3.3:75523523-75523542 | MS.gene33522:CDS | 25.0% |
| ! | CAAATAACAATCTAAATGGA+AGG | + | chr3.3:75522179-75522198 | None:intergenic | 25.0% |
| ! | CTTAGAAAAACAAAAAGTCA+AGG | + | chr3.3:75524131-75524150 | None:intergenic | 25.0% |
| ! | CTTTCATTCAACAAATTCAT+AGG | + | chr3.3:75524214-75524233 | None:intergenic | 25.0% |
| ! | TATGCTTTGATTACATAACA+CGG | - | chr3.3:75522578-75522597 | MS.gene33522:CDS | 25.0% |
| ! | TGATATTACTGTGATATTAC+AGG | - | chr3.3:75524396-75524415 | MS.gene33522:intron | 25.0% |
| !! | AACTTCAATCTTAAAGCATT+TGG | + | chr3.3:75523694-75523713 | None:intergenic | 25.0% |
| !! | GAATTTGAAGTATGATTCTA+TGG | - | chr3.3:75523876-75523895 | MS.gene33522:intron | 25.0% |
| !! | TCTTATATTCCTTTGTTTCA+GGG | - | chr3.3:75522757-75522776 | MS.gene33522:intron | 25.0% |
| !! | TTCTTATATTCCTTTGTTTC+AGG | - | chr3.3:75522756-75522775 | MS.gene33522:intron | 25.0% |
| !! | TTGTAGAAAAGTACATGAAA+GGG | - | chr3.3:75524290-75524309 | MS.gene33522:intron | 25.0% |
| !! | TTTGGTTTAAAAAAAAGAGC+AGG | + | chr3.3:75523567-75523586 | None:intergenic | 25.0% |
| !!! | AATATTGGCATACTAGTTTT+TGG | - | chr3.3:75522671-75522690 | MS.gene33522:intron | 25.0% |
| !!! | ATTTTGTTTAACATACATCG+TGG | + | chr3.3:75524049-75524068 | None:intergenic | 25.0% |
| !!! | CTATGAATTTGTTGAATGAA+AGG | - | chr3.3:75524212-75524231 | MS.gene33522:intron | 25.0% |
| !!! | CTTGACTTTTTGTTTTTCTA+AGG | - | chr3.3:75524129-75524148 | MS.gene33522:CDS | 25.0% |
| !!! | CTTTTGATTACATGTTGAAA+GGG | - | chr3.3:75524476-75524495 | MS.gene33522:intron | 25.0% |
| !!! | TGATGTTTGATTTTTATACG+AGG | - | chr3.3:75523906-75523925 | MS.gene33522:intron | 25.0% |
| !!! | TTTTGATTACATGTTGAAAG+GGG | - | chr3.3:75524477-75524496 | MS.gene33522:intron | 25.0% |
| !!! | TTTTTGTTTTTCTAAGGGTT+GGG | - | chr3.3:75524135-75524154 | MS.gene33522:CDS | 25.0% |
| AAAAGAGCAGGAGTTAATAA+TGG | + | chr3.3:75523555-75523574 | None:intergenic | 30.0% | |
| AAGTAGTATGATATGAAGCA+CGG | + | chr3.3:75522385-75522404 | None:intergenic | 30.0% | |
| AGAATACAAACTTTGTCAAG+AGG | + | chr3.3:75523257-75523276 | None:intergenic | 30.0% | |
| ATCAGATGTATCATACGAAT+GGG | - | chr3.3:75524505-75524524 | MS.gene33522:CDS | 30.0% | |
| CAGTCAAGATTCTCTATTAA+GGG | - | chr3.3:75523140-75523159 | MS.gene33522:CDS | 30.0% | |
| GAATTAGGAAAACATAGACT+CGG | + | chr3.3:75523344-75523363 | None:intergenic | 30.0% | |
| GCATTGTACCTAATTCATAT+CGG | + | chr3.3:75523658-75523677 | None:intergenic | 30.0% | |
| TCAGTCAAGATTCTCTATTA+AGG | - | chr3.3:75523139-75523158 | MS.gene33522:intron | 30.0% | |
| TGCATTGCAGTGATTTAATA+TGG | - | chr3.3:75522731-75522750 | MS.gene33522:intron | 30.0% | |
| TTGAATGAAAGGACTCTTAA+GGG | - | chr3.3:75524223-75524242 | MS.gene33522:intron | 30.0% | |
| ! | ATGTACTTTTCTACAACCTT+AGG | + | chr3.3:75524286-75524305 | None:intergenic | 30.0% |
| ! | GCTTTGTTAATCTCTGAAAA+TGG | + | chr3.3:75524457-75524476 | None:intergenic | 30.0% |
| ! | GTTGTAGAAAAGTACATGAA+AGG | - | chr3.3:75524289-75524308 | MS.gene33522:intron | 30.0% |
| ! | TGTAGAAAAGTACATGAAAG+GGG | - | chr3.3:75524291-75524310 | MS.gene33522:intron | 30.0% |
| ! | TTCAATCTTAAAGCATTTGG+TGG | + | chr3.3:75523691-75523710 | None:intergenic | 30.0% |
| !! | ACTCTTAAGGGTACATTTTA+TGG | - | chr3.3:75524235-75524254 | MS.gene33522:intron | 30.0% |
| !! | GCTTTTGATTACATGTTGAA+AGG | - | chr3.3:75524475-75524494 | MS.gene33522:intron | 30.0% |
| !!! | CTTTTTGTTTTTCTAAGGGT+TGG | - | chr3.3:75524134-75524153 | MS.gene33522:CDS | 30.0% |
| !!! | TTTCTAGCTTTTGCTTTTTC+AGG | - | chr3.3:75522151-75522170 | MS.gene33522:CDS | 30.0% |
| !!! | TTTTGTTTTTCTAAGGGTTG+GGG | - | chr3.3:75524136-75524155 | MS.gene33522:CDS | 30.0% |
| AAAGATAGCAACAGATGAAC+CGG | + | chr3.3:75523426-75523445 | None:intergenic | 35.0% | |
| AAAGTTTGTATTCTCAGCTG+TGG | - | chr3.3:75523263-75523282 | MS.gene33522:intron | 35.0% | |
| AATGTTGCTAAACCAAAACC+CGG | - | chr3.3:75523404-75523423 | MS.gene33522:CDS | 35.0% | |
| ACAGGTTTGTCATGATCTTT+CGG | + | chr3.3:75523812-75523831 | None:intergenic | 35.0% | |
| AGTAAACATCAGTGTGACAA+AGG | + | chr3.3:75522543-75522562 | None:intergenic | 35.0% | |
| ATTTGCTTCCATGCTTCTAT+AGG | - | chr3.3:75523365-75523384 | MS.gene33522:CDS | 35.0% | |
| CAGAAAATGCATAGAAATCG+TGG | + | chr3.3:75523852-75523871 | None:intergenic | 35.0% | |
| CATCAGATGTATCATACGAA+TGG | - | chr3.3:75524504-75524523 | MS.gene33522:CDS | 35.0% | |
| CATTCGTATGATACATCTGA+TGG | + | chr3.3:75524506-75524525 | None:intergenic | 35.0% | |
| CCAAATATACGAGGAAACAA+TGG | + | chr3.3:75522790-75522809 | None:intergenic | 35.0% | |
| CCATTGTTTCCTCGTATATT+TGG | - | chr3.3:75522787-75522806 | MS.gene33522:CDS | 35.0% | |
| GAAGTATGTTAGTGCTTCAT+AGG | + | chr3.3:75522255-75522274 | None:intergenic | 35.0% | |
| GCACTAACATACTTCAGATT+AGG | - | chr3.3:75522260-75522279 | MS.gene33522:intron | 35.0% | |
| GCATGGAAGCAAATTGAATT+AGG | + | chr3.3:75523359-75523378 | None:intergenic | 35.0% | |
| GTAAACATCAGTGTGACAAA+GGG | + | chr3.3:75522542-75522561 | None:intergenic | 35.0% | |
| GTAATTGCTGAAATGACCAA+CGG | - | chr3.3:75523957-75523976 | MS.gene33522:intron | 35.0% | |
| GTTGAATGAAAGGACTCTTA+AGG | - | chr3.3:75524222-75524241 | MS.gene33522:intron | 35.0% | |
| TACTGTGATATTACAGGAAC+TGG | - | chr3.3:75524402-75524421 | MS.gene33522:intron | 35.0% | |
| TCAATGAAATCATATGCGTC+AGG | + | chr3.3:75522299-75522318 | None:intergenic | 35.0% | |
| TCACACTGATGTTTACTTCT+GGG | - | chr3.3:75522546-75522565 | MS.gene33522:intron | 35.0% | |
| TCAGATGTATCATACGAATG+GGG | - | chr3.3:75524506-75524525 | MS.gene33522:CDS | 35.0% | |
| TGAAATGCATCGTCTTTGTT+TGG | + | chr3.3:75524184-75524203 | None:intergenic | 35.0% | |
| TGATCTTCTTAGGATCAACA+CGG | - | chr3.3:75523091-75523110 | MS.gene33522:intron | 35.0% | |
| TGGTTCCAAAACACAATCAA+GGG | + | chr3.3:75522419-75522438 | None:intergenic | 35.0% | |
| ! | TGAATCCCTTGATTGTGTTT+TGG | - | chr3.3:75522411-75522430 | MS.gene33522:CDS | 35.0% |
| !! | GGTTCTGTTTGTTTTCTTCA+AGG | - | chr3.3:75522692-75522711 | MS.gene33522:intron | 35.0% |
| !! | GTTGAACTAACTTGTTGAAC+AGG | + | chr3.3:75523830-75523849 | None:intergenic | 35.0% |
| !! | GTTGATTTTTGCAACACATC+CGG | + | chr3.3:75523225-75523244 | None:intergenic | 35.0% |
| !! | TCTTTTTAGCAACAAGCAAG+AGG | + | chr3.3:75524078-75524097 | None:intergenic | 35.0% |
| AAGATAGCAACAGATGAACC+GGG | + | chr3.3:75523425-75523444 | None:intergenic | 40.0% | |
| ACCAAAATTTAGGCTGCTGA+AGG | - | chr3.3:75523581-75523600 | MS.gene33522:CDS | 40.0% | |
| ATATTTGGTCATGAAGCTGG+AGG | - | chr3.3:75522802-75522821 | MS.gene33522:CDS | 40.0% | |
| CAAAATTTAGGCTGCTGAAG+GGG | - | chr3.3:75523583-75523602 | MS.gene33522:CDS | 40.0% | |
| CAGATGTATCATACGAATGG+GGG | - | chr3.3:75524507-75524526 | MS.gene33522:CDS | 40.0% | |
| CAGGTTTGTCATGATCTTTC+GGG | + | chr3.3:75523811-75523830 | None:intergenic | 40.0% | |
| CCAAAATTTAGGCTGCTGAA+GGG | - | chr3.3:75523582-75523601 | MS.gene33522:CDS | 40.0% | |
| CGTATATTTGGTCATGAAGC+TGG | - | chr3.3:75522799-75522818 | MS.gene33522:CDS | 40.0% | |
| CTGGTTCCAAAACACAATCA+AGG | + | chr3.3:75522420-75522439 | None:intergenic | 40.0% | |
| CTTTGATTACATAACACGGC+GGG | - | chr3.3:75522582-75522601 | MS.gene33522:CDS | 40.0% | |
| GATATTACAGGAACTGGAAC+TGG | - | chr3.3:75524408-75524427 | MS.gene33522:intron | 40.0% | |
| GCAACATGTGTGATCTTCTT+AGG | - | chr3.3:75523081-75523100 | MS.gene33522:intron | 40.0% | |
| GCTTCATGACCAAATATACG+AGG | + | chr3.3:75522799-75522818 | None:intergenic | 40.0% | |
| GCTTTGATTACATAACACGG+CGG | - | chr3.3:75522581-75522600 | MS.gene33522:CDS | 40.0% | |
| GGAGATTGAGATGTGAACAT+TGG | - | chr3.3:75523927-75523946 | MS.gene33522:intron | 40.0% | |
| GGTTCAGCTTAGCTTAAGTA+AGG | + | chr3.3:75524110-75524129 | None:intergenic | 40.0% | |
| GGTTCATCTGTTGCTATCTT+TGG | - | chr3.3:75523425-75523444 | MS.gene33522:CDS | 40.0% | |
| GTCACACTGATGTTTACTTC+TGG | - | chr3.3:75522545-75522564 | MS.gene33522:intron | 40.0% | |
| GTTTCCAGCCGATATGAATT+AGG | - | chr3.3:75523647-75523666 | MS.gene33522:intron | 40.0% | |
| TACAAGAGTAACATACCGCA+AGG | + | chr3.3:75523466-75523485 | None:intergenic | 40.0% | |
| TATTTGGTCATGAAGCTGGA+GGG | - | chr3.3:75522803-75522822 | MS.gene33522:CDS | 40.0% | |
| TCTAATGTCGATCAGGATTG+TGG | - | chr3.3:75522956-75522975 | MS.gene33522:CDS | 40.0% | |
| TCTGGTGCATCAAGAATCAT+TGG | - | chr3.3:75523614-75523633 | MS.gene33522:CDS | 40.0% | |
| TCTGTTGCTATCTTTGGACT+TGG | - | chr3.3:75523431-75523450 | MS.gene33522:CDS | 40.0% | |
| TGTACCTAATTCATATCGGC+TGG | + | chr3.3:75523654-75523673 | None:intergenic | 40.0% | |
| TGTTGGCAGCTAAGAAGTTT+GGG | - | chr3.3:75523768-75523787 | MS.gene33522:intron | 40.0% | |
| TTCCATGCTTCTATAGGTCT+TGG | - | chr3.3:75523371-75523390 | MS.gene33522:CDS | 40.0% | |
| TTGTTGGCAGCTAAGAAGTT+TGG | - | chr3.3:75523767-75523786 | MS.gene33522:intron | 40.0% | |
| ! | ATGTAGATGTACCGACGAAA+TGG | + | chr3.3:75523178-75523197 | None:intergenic | 40.0% |
| ! | GTGTGACAGATCTAAAACCA+GGG | - | chr3.3:75522994-75523013 | MS.gene33522:CDS | 40.0% |
| ! | TGTGACAGATCTAAAACCAG+GGG | - | chr3.3:75522995-75523014 | MS.gene33522:CDS | 40.0% |
| ! | TGTTTACTTCTGGGAAGCTA+AGG | - | chr3.3:75522555-75522574 | MS.gene33522:intron | 40.0% |
| !! | AGATGTGAACATTGGTTTGC+AGG | - | chr3.3:75523935-75523954 | MS.gene33522:intron | 40.0% |
| !! | AGGTGAAGAGTATCTTGAGA+CGG | + | chr3.3:75522519-75522538 | None:intergenic | 40.0% |
| AACATCAGTGTGACAAAGGG+AGG | + | chr3.3:75522539-75522558 | None:intergenic | 45.0% | |
| AACATGCGCATACACACTCA+AGG | + | chr3.3:75523489-75523508 | None:intergenic | 45.0% | |
| AACCTTAGGAAGATCAGTGC+GGG | + | chr3.3:75524272-75524291 | None:intergenic | 45.0% | |
| ATCGTGGACACATTCGAATG+CGG | + | chr3.3:75524033-75524052 | None:intergenic | 45.0% | |
| ATCTTTGGACTTGGAGCTGT+TGG | - | chr3.3:75523440-75523459 | MS.gene33522:CDS | 45.0% | |
| ATTGCTGAAATGACCAACGG+AGG | - | chr3.3:75523960-75523979 | MS.gene33522:intron | 45.0% | |
| CAACCTTAGGAAGATCAGTG+CGG | + | chr3.3:75524273-75524292 | None:intergenic | 45.0% | |
| CACCAAGACCTATAGAAGCA+TGG | + | chr3.3:75523376-75523395 | None:intergenic | 45.0% | |
| CATCGAATCGTGCACAGTTA+CGG | - | chr3.3:75524326-75524345 | MS.gene33522:intron | 45.0% | |
| CTCTCCTCTGACTTACAATG+TGG | + | chr3.3:75523062-75523081 | None:intergenic | 45.0% | |
| CTGTCCACATTGTAAGTCAG+AGG | - | chr3.3:75523055-75523074 | MS.gene33522:intron | 45.0% | |
| GGTCAGATCATCAAGTGTAG+AGG | - | chr3.3:75522090-75522109 | MS.gene33522:CDS | 45.0% | |
| GTTGGCAGCTAAGAAGTTTG+GGG | - | chr3.3:75523769-75523788 | MS.gene33522:intron | 45.0% | |
| TACATTCAGCGAGTACACTG+TGG | - | chr3.3:75523193-75523212 | MS.gene33522:CDS | 45.0% | |
| TATGAAGCACGGATACACAC+CGG | + | chr3.3:75522374-75522393 | None:intergenic | 45.0% | |
| TCTACTTCTTCCATCACCAG+TGG | + | chr3.3:75522469-75522488 | None:intergenic | 45.0% | |
| TCTTAGGATCAACACGGACA+GGG | - | chr3.3:75523097-75523116 | MS.gene33522:intron | 45.0% | |
| TTCTTAGGATCAACACGGAC+AGG | - | chr3.3:75523096-75523115 | MS.gene33522:intron | 45.0% | |
| TTGTGGGTCTAATGTCGATC+AGG | - | chr3.3:75522949-75522968 | MS.gene33522:CDS | 45.0% | |
| ! | ACTTTGTCAAGAGGTGCATC+AGG | + | chr3.3:75523248-75523267 | None:intergenic | 45.0% |
| ! | CCCTTCAGCAGCCTAAATTT+TGG | + | chr3.3:75523585-75523604 | None:intergenic | 45.0% |
| ! | CTTTGTCAAGAGGTGCATCA+GGG | + | chr3.3:75523247-75523266 | None:intergenic | 45.0% |
| ! | GATCGTGCTGTTGAATGTAC+CGG | - | chr3.3:75523987-75524006 | MS.gene33522:intron | 45.0% |
| ! | GGTGTGACAGATCTAAAACC+AGG | - | chr3.3:75522993-75523012 | MS.gene33522:CDS | 45.0% |
| ! | GTACCGACGAAATGGTGAAT+CGG | + | chr3.3:75523170-75523189 | None:intergenic | 45.0% |
| ! | TATCTTGAGACGGACTTCAC+CGG | + | chr3.3:75522509-75522528 | None:intergenic | 45.0% |
| !! | ACTGGTGATGGAAGAAGTAG+AGG | - | chr3.3:75522468-75522487 | MS.gene33522:intron | 45.0% |
| !!! | TTGTGTTTTGGAACCAGCTG+CGG | - | chr3.3:75522423-75522442 | MS.gene33522:CDS | 45.0% |
| ACCTTAGGAAGATCAGTGCG+GGG | + | chr3.3:75524271-75524290 | None:intergenic | 50.0% | |
| ATGCCCTGCCTGTATTCACA+GGG | - | chr3.3:75523021-75523040 | MS.gene33522:intron | 50.0% | |
| CTCAGCTGTGGAATATGCAC+AGG | - | chr3.3:75523275-75523294 | MS.gene33522:intron | 50.0% | |
| CTTAGGATCAACACGGACAG+GGG | - | chr3.3:75523098-75523117 | MS.gene33522:intron | 50.0% | |
| GAGTACACTGTGGTTCATGC+CGG | - | chr3.3:75523203-75523222 | MS.gene33522:CDS | 50.0% | |
| GATACACACCGGACACAACA+TGG | + | chr3.3:75522363-75522382 | None:intergenic | 50.0% | |
| GATCATAGCCTGGATGCTAC+CGG | + | chr3.3:75524009-75524028 | None:intergenic | 50.0% | |
| GATGATCTGACCAGCAGTGT+TGG | + | chr3.3:75522082-75522101 | None:intergenic | 50.0% | |
| GGAGTCTGACCCTGAAACAA+AGG | + | chr3.3:75522769-75522788 | None:intergenic | 50.0% | |
| TGAAATGACCAACGGAGGTG+TGG | - | chr3.3:75523965-75523984 | MS.gene33522:intron | 50.0% | |
| ! | ATCAGGATTGTGGAGAGCGT+AGG | - | chr3.3:75522966-75522985 | MS.gene33522:CDS | 50.0% |
| ! | CAGCCGATTCACCATTTCGT+CGG | - | chr3.3:75523164-75523183 | MS.gene33522:CDS | 50.0% |
| ! | CTGTATTCACAGGGGAGTGT+GGG | - | chr3.3:75523030-75523049 | MS.gene33522:intron | 50.0% |
| ! | GCAACAGATGAACCGGGTTT+TGG | + | chr3.3:75523419-75523438 | None:intergenic | 50.0% |
| ! | TGAATGTACCGGTAGCATCC+AGG | - | chr3.3:75523998-75524017 | MS.gene33522:intron | 50.0% |
| ! | TGTATTCACAGGGGAGTGTG+GGG | - | chr3.3:75523031-75523050 | MS.gene33522:intron | 50.0% |
| !! | GGTGATGGAAGAAGTAGAGG+TGG | - | chr3.3:75522471-75522490 | MS.gene33522:intron | 50.0% |
| !! | TGGGGTGTTGCTGTACTTGT+TGG | - | chr3.3:75524154-75524173 | MS.gene33522:intron | 50.0% |
| ACTCCCCTGTGAATACAGGC+AGG | + | chr3.3:75523028-75523047 | None:intergenic | 55.0% | |
| CATGCCCTGCCTGTATTCAC+AGG | - | chr3.3:75523020-75523039 | MS.gene33522:intron | 55.0% | |
| CCACACTCCCCTGTGAATAC+AGG | + | chr3.3:75523032-75523051 | None:intergenic | 55.0% | |
| CCTGTATTCACAGGGGAGTG+TGG | - | chr3.3:75523029-75523048 | MS.gene33522:intron | 55.0% | |
| CGAATGCGGAGATCATAGCC+TGG | + | chr3.3:75524019-75524038 | None:intergenic | 55.0% | |
| CGGTGTGTCCATGTTGTGTC+CGG | - | chr3.3:75522352-75522371 | MS.gene33522:CDS | 55.0% | |
| CTCCCCTGTGAATACAGGCA+GGG | + | chr3.3:75523027-75523046 | None:intergenic | 55.0% | |
| TGCCCTGCCTGTATTCACAG+GGG | - | chr3.3:75523022-75523041 | MS.gene33522:intron | 55.0% | |
| TTTAGGCTGCTGAAGGGGCA+AGG | - | chr3.3:75523588-75523607 | MS.gene33522:CDS | 55.0% | |
| ! | ACCCCGCACTGATCTTCCTA+AGG | - | chr3.3:75524267-75524286 | MS.gene33522:intron | 55.0% |
| ! | ATTGTGGAGAGCGTAGGCGA+GGG | - | chr3.3:75522972-75522991 | MS.gene33522:CDS | 55.0% |
| !! | ACTTGGAGCTGTTGGCCTTG+CGG | - | chr3.3:75523448-75523467 | MS.gene33522:CDS | 55.0% |
| AGCACGATCCACACCTCCGT+TGG | + | chr3.3:75523976-75523995 | None:intergenic | 60.0% | |
| GCTGAAGGGGCAAGGATGTC+TGG | - | chr3.3:75523596-75523615 | MS.gene33522:CDS | 60.0% | |
| GGAACCAGCTGCGGTTGCAT+GGG | - | chr3.3:75522432-75522451 | MS.gene33522:CDS | 60.0% | |
| TGGAACCAGCTGCGGTTGCA+TGG | - | chr3.3:75522431-75522450 | MS.gene33522:CDS | 60.0% | |
| ! | GATTGTGGAGAGCGTAGGCG+AGG | - | chr3.3:75522971-75522990 | MS.gene33522:CDS | 60.0% |
| !! | AGACGGACTTCACCGGCTTG+TGG | + | chr3.3:75522502-75522521 | None:intergenic | 60.0% |
| ACAGGCAGGGCATGATCCCC+TGG | + | chr3.3:75523014-75523033 | None:intergenic | 65.0% | |
| ACCAGCTGCGGTTGCATGGG+AGG | - | chr3.3:75522435-75522454 | MS.gene33522:CDS | 65.0% | |
| AGCTGCGGTTGCATGGGAGG+CGG | - | chr3.3:75522438-75522457 | MS.gene33522:CDS | 65.0% | |
| !! | CGGACTTCACCGGCTTGTGG+TGG | + | chr3.3:75522499-75522518 | None:intergenic | 65.0% |
| ATGGGAGGCGGGGAAGCCAC+TGG | - | chr3.3:75522450-75522469 | MS.gene33522:intron | 70.0% | |
| CTGCGGTTGCATGGGAGGCG+GGG | - | chr3.3:75522440-75522459 | MS.gene33522:intron | 70.0% | |
| GAGGTGGCGCCACCACAAGC+CGG | - | chr3.3:75522487-75522506 | MS.gene33522:intron | 70.0% | |
| GCCTCCCATGCAACCGCAGC+TGG | + | chr3.3:75522439-75522458 | None:intergenic | 70.0% | |
| GCTGCGGTTGCATGGGAGGC+GGG | - | chr3.3:75522439-75522458 | MS.gene33522:CDS | 70.0% | |
| GGCGGGGAAGCCACTGGTGA+TGG | - | chr3.3:75522456-75522475 | MS.gene33522:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.3 | gene | 75522075 | 75524534 | 75522075 | ID=MS.gene33522 |
| chr3.3 | mRNA | 75522075 | 75524534 | 75522075 | ID=MS.gene33522.t1;Parent=MS.gene33522 |
| chr3.3 | exon | 75524498 | 75524534 | 75524498 | ID=MS.gene33522.t1.exon1;Parent=MS.gene33522.t1 |
| chr3.3 | CDS | 75524498 | 75524534 | 75524498 | ID=cds.MS.gene33522.t1;Parent=MS.gene33522.t1 |
| chr3.3 | exon | 75524033 | 75524169 | 75524033 | ID=MS.gene33522.t1.exon2;Parent=MS.gene33522.t1 |
| chr3.3 | CDS | 75524033 | 75524169 | 75524033 | ID=cds.MS.gene33522.t1;Parent=MS.gene33522.t1 |
| chr3.3 | exon | 75523785 | 75523831 | 75523785 | ID=MS.gene33522.t1.exon3;Parent=MS.gene33522.t1 |
| chr3.3 | CDS | 75523785 | 75523831 | 75523785 | ID=cds.MS.gene33522.t1;Parent=MS.gene33522.t1 |
| chr3.3 | exon | 75523313 | 75523638 | 75523313 | ID=MS.gene33522.t1.exon4;Parent=MS.gene33522.t1 |
| chr3.3 | CDS | 75523313 | 75523638 | 75523313 | ID=cds.MS.gene33522.t1;Parent=MS.gene33522.t1 |
| chr3.3 | exon | 75523140 | 75523222 | 75523140 | ID=MS.gene33522.t1.exon5;Parent=MS.gene33522.t1 |
| chr3.3 | CDS | 75523140 | 75523222 | 75523140 | ID=cds.MS.gene33522.t1;Parent=MS.gene33522.t1 |
| chr3.3 | exon | 75522941 | 75523016 | 75522941 | ID=MS.gene33522.t1.exon6;Parent=MS.gene33522.t1 |
| chr3.3 | CDS | 75522941 | 75523016 | 75522941 | ID=cds.MS.gene33522.t1;Parent=MS.gene33522.t1 |
| chr3.3 | exon | 75522771 | 75522832 | 75522771 | ID=MS.gene33522.t1.exon7;Parent=MS.gene33522.t1 |
| chr3.3 | CDS | 75522771 | 75522832 | 75522771 | ID=cds.MS.gene33522.t1;Parent=MS.gene33522.t1 |
| chr3.3 | exon | 75522557 | 75522652 | 75522557 | ID=MS.gene33522.t1.exon8;Parent=MS.gene33522.t1 |
| chr3.3 | CDS | 75522557 | 75522652 | 75522557 | ID=cds.MS.gene33522.t1;Parent=MS.gene33522.t1 |
| chr3.3 | exon | 75522297 | 75522458 | 75522297 | ID=MS.gene33522.t1.exon9;Parent=MS.gene33522.t1 |
| chr3.3 | CDS | 75522297 | 75522458 | 75522297 | ID=cds.MS.gene33522.t1;Parent=MS.gene33522.t1 |
| chr3.3 | exon | 75522075 | 75522191 | 75522075 | ID=MS.gene33522.t1.exon10;Parent=MS.gene33522.t1 |
| chr3.3 | CDS | 75522075 | 75522191 | 75522075 | ID=cds.MS.gene33522.t1;Parent=MS.gene33522.t1 |
| Gene Sequence |
| Protein sequence |
