Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene031852.t1 | KEH34846.1 | 92.6 | 502 | 36 | 1 | 1 | 502 | 1 | 501 | 3.40E-258 | 900.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene031852.t1 | Q84VX4 | 42.6 | 523 | 223 | 11 | 21 | 497 | 42 | 533 | 2.9e-93 | 344.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene031852.t1 | A0A072UZL2 | 92.6 | 502 | 36 | 1 | 1 | 502 | 1 | 501 | 2.4e-258 | 900.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene23930 | MS.gene031852 | PPI |
| MS.gene031852 | MS.gene015458 | PPI |
| MS.gene03716 | MS.gene031852 | PPI |
| MS.gene40241 | MS.gene031852 | PPI |
| MS.gene031852 | MS.gene032323 | PPI |
| MS.gene40689 | MS.gene031852 | PPI |
| MS.gene031852 | MS.gene025787 | PPI |
| MS.gene031852 | MS.gene97314 | PPI |
| MS.gene022091 | MS.gene031852 | PPI |
| MS.gene32240 | MS.gene031852 | PPI |
| MS.gene69077 | MS.gene031852 | PPI |
| MS.gene031852 | MS.gene049752 | PPI |
| MS.gene38996 | MS.gene031852 | PPI |
| MS.gene031852 | MS.gene09948 | PPI |
| MS.gene031852 | MS.gene95446 | PPI |
| MS.gene09143 | MS.gene031852 | PPI |
| MS.gene014595 | MS.gene031852 | PPI |
| MS.gene031852 | MS.gene69089 | PPI |
| MS.gene21145 | MS.gene031852 | PPI |
| MS.gene031852 | MS.gene007753 | PPI |
| MS.gene007855 | MS.gene031852 | PPI |
| MS.gene43188 | MS.gene031852 | PPI |
| MS.gene014578 | MS.gene031852 | PPI |
| MS.gene40225 | MS.gene031852 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene031852.t1 | MTR_3g072990 | 92.629 | 502 | 36 | 1 | 1 | 502 | 1 | 501 | 0.0 | 932 |
| MS.gene031852.t1 | MTR_3g072990 | 93.360 | 497 | 32 | 1 | 1 | 497 | 1 | 496 | 0.0 | 928 |
| MS.gene031852.t1 | MTR_3g072990 | 92.231 | 502 | 36 | 2 | 1 | 502 | 1 | 499 | 0.0 | 922 |
| MS.gene031852.t1 | MTR_3g072990 | 92.958 | 497 | 32 | 2 | 1 | 497 | 1 | 494 | 0.0 | 918 |
| MS.gene031852.t1 | MTR_3g072990 | 88.934 | 497 | 31 | 2 | 1 | 497 | 1 | 473 | 0.0 | 872 |
| MS.gene031852.t1 | MTR_3g072990 | 88.531 | 497 | 31 | 3 | 1 | 497 | 1 | 471 | 0.0 | 862 |
| MS.gene031852.t1 | MTR_5g059280 | 56.751 | 511 | 183 | 10 | 1 | 497 | 1 | 487 | 4.12e-177 | 516 |
| MS.gene031852.t1 | MTR_5g059280 | 54.207 | 511 | 173 | 10 | 1 | 497 | 1 | 464 | 5.44e-164 | 481 |
| MS.gene031852.t1 | MTR_5g059280 | 62.827 | 382 | 129 | 4 | 119 | 497 | 9 | 380 | 5.06e-157 | 461 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene031852.t1 | AT1G77720 | 42.586 | 526 | 225 | 11 | 18 | 497 | 39 | 533 | 2.36e-117 | 363 |
Find 119 sgRNAs with CRISPR-Local
Find 176 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGGCTCAACCTGCTGAATTT+TGG | 0.112779 | 3.4:-71812149 | None:intergenic |
| CGTGATTATGCTACTGCTTT+TGG | 0.142785 | 3.4:+71812952 | MS.gene031852:CDS |
| CATCCAGCTCCTTCCACTTC+TGG | 0.167296 | 3.4:-71813452 | None:intergenic |
| AGAAGCATGTTTCGAATTTC+CGG | 0.206618 | 3.4:-71812611 | None:intergenic |
| GGAAGCTTCGATTGGATTAC+AGG | 0.253851 | 3.4:+71812111 | MS.gene031852:CDS |
| TTACTACTCACGGCCTTATC+TGG | 0.297784 | 3.4:-71812757 | None:intergenic |
| GAAAGGCTCTCTTAGTAATA+AGG | 0.302755 | 3.4:+71813353 | MS.gene031852:CDS |
| AAGAGATCGAATATCTAAAT+AGG | 0.303126 | 3.4:+71812983 | MS.gene031852:CDS |
| TCCATCACTCTTTCAGCTAT+AGG | 0.366941 | 3.4:-71812430 | None:intergenic |
| TCAGAAAATACAGATAATTC+TGG | 0.367175 | 3.4:+71812454 | MS.gene031852:CDS |
| GCGTCTTGGCCTAATGATAT+TGG | 0.383887 | 3.4:-71811558 | None:intergenic |
| ATCCAGCTCCTTCCACTTCT+GGG | 0.386417 | 3.4:-71813451 | None:intergenic |
| CAATAAAATGTCAGTTGATA+AGG | 0.390414 | 3.4:+71812486 | MS.gene031852:CDS |
| GTAATAAGGATGGCCGAGTC+AGG | 0.391324 | 3.4:+71813367 | MS.gene031852:CDS |
| TCGAAGCCAGTTCTCATCTA+TGG | 0.394432 | 3.4:-71813487 | None:intergenic |
| TTCACTTGGATTCACAGAAA+TGG | 0.403420 | 3.4:+71812066 | MS.gene031852:CDS |
| TATCAACGTCTTGGCAAGAT+AGG | 0.408350 | 3.4:+71812847 | MS.gene031852:CDS |
| TATACAGCTTATAGATTATG+AGG | 0.416360 | 3.4:+71813026 | MS.gene031852:CDS |
| GCTGAACCTTTAGGAGAGAT+TGG | 0.419631 | 3.4:+71812400 | MS.gene031852:CDS |
| ATCTGCAGGCTCTTTCCCTT+CGG | 0.423208 | 3.4:-71812653 | None:intergenic |
| ACAGAAATGGAGTATATAGA+AGG | 0.428627 | 3.4:+71812079 | MS.gene031852:CDS |
| AGCGACACAGTCTTCGGTTG+TGG | 0.428827 | 3.4:+71812279 | MS.gene031852:CDS |
| CGCGTGGTTGCTGAACCTTT+AGG | 0.429090 | 3.4:+71812391 | MS.gene031852:CDS |
| ACCCGTTTGCATCTAGATAG+TGG | 0.430190 | 3.4:+71812364 | MS.gene031852:CDS |
| TCTGATCTCAAACTGAAATC+AGG | 0.438335 | 3.4:-71812169 | None:intergenic |
| GAGAGGACGGTGACGCTTCA+AGG | 0.442395 | 3.4:-71811440 | None:intergenic |
| CAGGGCAATCCAATATCATT+AGG | 0.447298 | 3.4:+71811549 | MS.gene031852:CDS |
| GCCAGTTCTCATCTATGGTC+TGG | 0.454845 | 3.4:-71813482 | None:intergenic |
| TCGAAACATGCTTCTTCTGA+TGG | 0.455598 | 3.4:+71812619 | MS.gene031852:CDS |
| TGAACGTGGCGGAGGAAGTC+CGG | 0.458954 | 3.4:-71811412 | None:intergenic |
| TGTTGCTCACGTACAGCGTC+AGG | 0.459132 | 3.4:+71812675 | MS.gene031852:CDS |
| TCTTCTTATATGAGTTCACT+TGG | 0.471070 | 3.4:+71812052 | MS.gene031852:CDS |
| GCTCGTCGGTCGCTAAGAAA+AGG | 0.473499 | 3.4:+71812782 | MS.gene031852:CDS |
| TGCAGGGGCCAATGATGAAA+AGG | 0.473794 | 3.4:+71812009 | MS.gene031852:intron |
| GATGGCCGAGTCAGGGATGA+TGG | 0.480498 | 3.4:+71813375 | MS.gene031852:CDS |
| GAATGCATATTAAAAGAATC+CGG | 0.482713 | 3.4:+71812592 | MS.gene031852:CDS |
| CAAGCTTCTGATTCTTGCGT+CGG | 0.486774 | 3.4:+71812523 | MS.gene031852:CDS |
| ACCAGACCATAGATGAGAAC+TGG | 0.487099 | 3.4:+71813481 | MS.gene031852:CDS |
| AAAGCAACCCAAAATTCAGC+AGG | 0.492014 | 3.4:+71812141 | MS.gene031852:CDS |
| GGCAAGCTTTATCAACGTCT+TGG | 0.492893 | 3.4:+71812838 | MS.gene031852:CDS |
| ACCACTATCTAGATGCAAAC+GGG | 0.503818 | 3.4:-71812365 | None:intergenic |
| AACCACTATCTAGATGCAAA+CGG | 0.505881 | 3.4:-71812366 | None:intergenic |
| AACCGAGCGGAAGCTTCGAT+TGG | 0.511352 | 3.4:+71812103 | MS.gene031852:CDS |
| ATATACATGGTACTTGAATA+CGG | 0.511944 | 3.4:+71813402 | MS.gene031852:CDS |
| TGATTCTTCTTCTTCCCCAC+CGG | 0.512407 | 3.4:+71811393 | MS.gene031852:CDS |
| GATAAGGCCGTGAGTAGTAA+AGG | 0.512605 | 3.4:+71812760 | MS.gene031852:CDS |
| TGTTCACAATAAAGTTCCAC+AGG | 0.513170 | 3.4:+71811676 | MS.gene031852:CDS |
| AGAAGGGGCAATAACAGTGC+TGG | 0.520852 | 3.4:-71811642 | None:intergenic |
| TGAACATTTGCATCTTGAGA+AGG | 0.521941 | 3.4:-71811659 | None:intergenic |
| ACGGGTTGTTGAATTCATCA+TGG | 0.524588 | 3.4:-71812347 | None:intergenic |
| AGGCGGCTTGAACGTGGCGG+AGG | 0.527722 | 3.4:-71811420 | None:intergenic |
| TTGAAGCGTCACCGTCCTCT+CGG | 0.528821 | 3.4:+71811442 | MS.gene031852:CDS |
| TAAACACCAATCTCTCCTAA+AGG | 0.534507 | 3.4:-71812406 | None:intergenic |
| GAACATTTGCATCTTGAGAA+GGG | 0.534895 | 3.4:-71811658 | None:intergenic |
| TTCTTGCGTCGGTGCCGAGT+TGG | 0.535688 | 3.4:+71812534 | MS.gene031852:CDS |
| ATTCATCATGGGAGCTGAAG+TGG | 0.537588 | 3.4:-71812335 | None:intergenic |
| CGTGGCGGAGGAAGTCCGGT+GGG | 0.537591 | 3.4:-71811408 | None:intergenic |
| TTGCTTGAAGAAGTTATGAA+AGG | 0.538181 | 3.4:+71813336 | MS.gene031852:CDS |
| ATCTAATTTATTTAGGTACA+GGG | 0.538797 | 3.4:+71811531 | MS.gene031852:intron |
| TGACGAAGAATCGTGCGTCT+TGG | 0.538907 | 3.4:-71811572 | None:intergenic |
| AGACAAATTCTCCAACTCAA+TGG | 0.540361 | 3.4:-71812032 | None:intergenic |
| GATTTCAGTTTGAGATCAGA+CGG | 0.541511 | 3.4:+71812172 | MS.gene031852:CDS |
| TCAACCAGCGACACAGTCTT+CGG | 0.541575 | 3.4:+71812273 | MS.gene031852:CDS |
| AAGGTTAGACTTCCCATCCA+TGG | 0.543192 | 3.4:-71811359 | None:intergenic |
| TGATGAAAAGGCCATTGAGT+TGG | 0.543682 | 3.4:+71812021 | MS.gene031852:CDS |
| CGGGTTGTTGAATTCATCAT+GGG | 0.548757 | 3.4:-71812346 | None:intergenic |
| ATTTCAGTTTGAGATCAGAC+GGG | 0.549156 | 3.4:+71812173 | MS.gene031852:CDS |
| CGAGGAGAGCTACGGTTACA+CGG | 0.549879 | 3.4:+71812218 | MS.gene031852:CDS |
| TCCTATAGCTGAAAGAGTGA+TGG | 0.553171 | 3.4:+71812429 | MS.gene031852:CDS |
| GAAGAAGAATCAGACTTGAT+CGG | 0.557672 | 3.4:-71811382 | None:intergenic |
| CTCACATGTTGTCCCAGAAG+TGG | 0.558692 | 3.4:+71813439 | MS.gene031852:CDS |
| ACAACCGAAGACTGTGTCGC+TGG | 0.559947 | 3.4:-71812277 | None:intergenic |
| TGTACGTGAGCAACATCTGC+AGG | 0.565622 | 3.4:-71812667 | None:intergenic |
| AACATTTGCATCTTGAGAAG+GGG | 0.575571 | 3.4:-71811657 | None:intergenic |
| CACTTAAGAAGATCAAACTC+AGG | 0.575749 | 3.4:+71812926 | MS.gene031852:CDS |
| GCGACACAGTCTTCGGTTGT+GGG | 0.577333 | 3.4:+71812280 | MS.gene031852:CDS |
| CGTCTTGGCAAGATAGGCAG+TGG | 0.580059 | 3.4:+71812853 | MS.gene031852:CDS |
| TTCGAGATTGAATCATGCGT+TGG | 0.581661 | 3.4:-71811596 | None:intergenic |
| CAGAAGTGGAAGGAGCTGGA+TGG | 0.581825 | 3.4:+71813453 | MS.gene031852:CDS |
| GTCCCAGAAGTGGAAGGAGC+TGG | 0.589721 | 3.4:+71813449 | MS.gene031852:CDS |
| ACTCTCTTTAGATGCCAACT+CGG | 0.590583 | 3.4:-71812548 | None:intergenic |
| CATGTTGTCCCAGAAGTGGA+AGG | 0.590690 | 3.4:+71813443 | MS.gene031852:CDS |
| GGGAATAAATACCGAGAGGA+CGG | 0.591139 | 3.4:-71811453 | None:intergenic |
| TAATAAGGATGGCCGAGTCA+GGG | 0.591503 | 3.4:+71813368 | MS.gene031852:CDS |
| GGCTCTCTTAGTAATAAGGA+TGG | 0.595780 | 3.4:+71813357 | MS.gene031852:CDS |
| ATCCAATCGAAGCTTCCGCT+CGG | 0.603075 | 3.4:-71812105 | None:intergenic |
| TATATCCATCATCCCTGACT+CGG | 0.603166 | 3.4:-71813380 | None:intergenic |
| GTGGAGATTGTTCCATGGAT+GGG | 0.605130 | 3.4:+71811347 | None:intergenic |
| AAGAATCAGACTTGATCGGA+AGG | 0.605161 | 3.4:-71811378 | None:intergenic |
| GCTTCAAGGCGGCTTGAACG+TGG | 0.610273 | 3.4:-71811426 | None:intergenic |
| GGTGGAGATTGTTCCATGGA+TGG | 0.615431 | 3.4:+71811346 | None:intergenic |
| GATGGTGACAAGTTAACCGA+AGG | 0.619313 | 3.4:+71812637 | MS.gene031852:CDS |
| TATGTTGCCGAGGAGAGCTA+CGG | 0.620209 | 3.4:+71812210 | MS.gene031852:CDS |
| CGTGTAACCGTAGCTCTCCT+CGG | 0.621401 | 3.4:-71812217 | None:intergenic |
| ACGTGGCGGAGGAAGTCCGG+TGG | 0.629067 | 3.4:-71811409 | None:intergenic |
| CTTGGCAAGATAGGCAGTGG+TGG | 0.631587 | 3.4:+71812856 | MS.gene031852:CDS |
| TCTAGATAGTGGTTTGCGCG+TGG | 0.636186 | 3.4:+71812375 | MS.gene031852:CDS |
| ACTTAAGAAGATCAAACTCA+GGG | 0.638163 | 3.4:+71812927 | MS.gene031852:CDS |
| GGATGATGGATATATATACA+TGG | 0.641730 | 3.4:+71813389 | MS.gene031852:CDS |
| TGAGTTGCTCTATGTTGCCG+AGG | 0.641925 | 3.4:+71812200 | MS.gene031852:CDS |
| TGGAAGCAGTGAGGTGCACA+AGG | 0.643394 | 3.4:+71812876 | MS.gene031852:CDS |
| TTGTATTTAGGTGACTGACA+AGG | 0.644007 | 3.4:+71813311 | MS.gene031852:intron |
| GGAATGAACCGATGTAGTTG+TGG | 0.646819 | 3.4:-71812314 | None:intergenic |
| TTCGTGTGCCACAACTACAT+CGG | 0.654597 | 3.4:+71812306 | MS.gene031852:CDS |
| GTGGCGGAGGAAGTCCGGTG+GGG | 0.675364 | 3.4:-71811407 | None:intergenic |
| CGTGAGTAGTAAAGGCTCGT+CGG | 0.676103 | 3.4:+71812768 | MS.gene031852:CDS |
| ATGGTGACAAGTTAACCGAA+GGG | 0.676778 | 3.4:+71812638 | MS.gene031852:CDS |
| CGACGAGCCTTTACTACTCA+CGG | 0.678410 | 3.4:-71812767 | None:intergenic |
| GAGGAGAGCTACGGTTACAC+GGG | 0.678632 | 3.4:+71812219 | MS.gene031852:CDS |
| TCAAGGCGGCTTGAACGTGG+CGG | 0.679591 | 3.4:-71811423 | None:intergenic |
| TTTCAGTTTGAGATCAGACG+GGG | 0.686391 | 3.4:+71812174 | MS.gene031852:CDS |
| GAATATCTAAATAGGCTGAG+AGG | 0.686764 | 3.4:+71812991 | MS.gene031852:CDS |
| GATGTAGTTGTGGCACACGA+AGG | 0.697677 | 3.4:-71812304 | None:intergenic |
| AGGCAGTGGTGGAAGCAGTG+AGG | 0.705092 | 3.4:+71812867 | MS.gene031852:CDS |
| GTTCACAATAAAGTTCCACA+GGG | 0.719306 | 3.4:+71811677 | MS.gene031852:CDS |
| AGGACGGTGACGCTTCAAGG+CGG | 0.730343 | 3.4:-71811437 | None:intergenic |
| GTATATAGAAGGCAACCGAG+CGG | 0.739222 | 3.4:+71812090 | MS.gene031852:CDS |
| TTCAGTTTGAGATCAGACGG+GGG | 0.744679 | 3.4:+71812175 | MS.gene031852:CDS |
| CTTAAGAAGATCAAACTCAG+GGG | 0.774854 | 3.4:+71812928 | MS.gene031852:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTCAGTAATAATTTTTTTT+GGG | + | chr3.4:71813209-71813228 | MS.gene031852:intron | 10.0% |
| !!! | TTTTCAGTAATAATTTTTTT+TGG | + | chr3.4:71813208-71813227 | MS.gene031852:intron | 10.0% |
| !! | GTTTCTAATCTAATTTATTT+AGG | + | chr3.4:71811524-71811543 | MS.gene031852:intron | 15.0% |
| !! | AATCTAATTTATTTAGGTAC+AGG | + | chr3.4:71811530-71811549 | MS.gene031852:intron | 20.0% |
| !! | ATCTAATTTATTTAGGTACA+GGG | + | chr3.4:71811531-71811550 | MS.gene031852:intron | 20.0% |
| !! | TGCATTGTTAAAAACATATT+TGG | - | chr3.4:71811993-71812012 | None:intergenic | 20.0% |
| !! | TTAACCTTGAAAAATAAATC+AGG | - | chr3.4:71812817-71812836 | None:intergenic | 20.0% |
| !!! | AAATATGTTTTTAACAATGC+AGG | + | chr3.4:71811992-71812011 | MS.gene031852:intron | 20.0% |
| !!! | AATATGTTTTTAACAATGCA+GGG | + | chr3.4:71811993-71812012 | MS.gene031852:intron | 20.0% |
| !!! | ATACTCATTGTCAATTTTTT+GGG | + | chr3.4:71813169-71813188 | MS.gene031852:intron | 20.0% |
| !!! | ATTCTTTTAATATGCATTCT+TGG | - | chr3.4:71812591-71812610 | None:intergenic | 20.0% |
| !!! | ATTTTTGTCACTTACTTAAT+TGG | + | chr3.4:71811863-71811882 | MS.gene031852:intron | 20.0% |
| !!! | CTTTTTTAATAAACCCAATT+TGG | + | chr3.4:71811707-71811726 | MS.gene031852:intron | 20.0% |
| !!! | GATTTATTTTTCAAGGTTAA+TGG | + | chr3.4:71812817-71812836 | MS.gene031852:CDS | 20.0% |
| !!! | TTTTTGTCACTTACTTAATT+GGG | + | chr3.4:71811864-71811883 | MS.gene031852:intron | 20.0% |
| ! | AAAGTTAGAAAAACCAGATA+AGG | + | chr3.4:71812744-71812763 | MS.gene031852:CDS | 25.0% |
| ! | AAGACAGTAAAGATTCAATT+TGG | - | chr3.4:71811911-71811930 | None:intergenic | 25.0% |
| ! | AAGAGATCGAATATCTAAAT+AGG | + | chr3.4:71812983-71813002 | MS.gene031852:CDS | 25.0% |
| ! | AAGTTGAATTGAAAAGGAAA+AGG | - | chr3.4:71811477-71811496 | None:intergenic | 25.0% |
| ! | AGTTGAATTGAAAAGGAAAA+GGG | - | chr3.4:71811476-71811495 | None:intergenic | 25.0% |
| ! | ATATACATGGTACTTGAATA+CGG | + | chr3.4:71813402-71813421 | MS.gene031852:CDS | 25.0% |
| ! | GAAAAATAAATCAGGATCAT+AGG | - | chr3.4:71812809-71812828 | None:intergenic | 25.0% |
| ! | GAATGCATATTAAAAGAATC+CGG | + | chr3.4:71812592-71812611 | MS.gene031852:CDS | 25.0% |
| ! | TAAAAAAGAAAATTACCCTG+TGG | - | chr3.4:71811695-71811714 | None:intergenic | 25.0% |
| ! | TATACAGCTTATAGATTATG+AGG | + | chr3.4:71813026-71813045 | MS.gene031852:CDS | 25.0% |
| ! | TCAGAAAATACAGATAATTC+TGG | + | chr3.4:71812454-71812473 | MS.gene031852:CDS | 25.0% |
| ! | TGAGCAAAAATTTAATTCAC+TGG | - | chr3.4:71813288-71813307 | None:intergenic | 25.0% |
| ! | TGTGAAGCATAAATAACTAA+AGG | - | chr3.4:71813101-71813120 | None:intergenic | 25.0% |
| !! | ACATCCAAAAATGATGTTTT+GGG | - | chr3.4:71812709-71812728 | None:intergenic | 25.0% |
| !! | AGGGTTTTCAATTTTCAATT+AGG | + | chr3.4:71811501-71811520 | MS.gene031852:intron | 25.0% |
| !! | CAATAAAATGTCAGTTGATA+AGG | + | chr3.4:71812486-71812505 | MS.gene031852:CDS | 25.0% |
| !! | GGGTTTTCAATTTTCAATTA+GGG | + | chr3.4:71811502-71811521 | MS.gene031852:intron | 25.0% |
| !! | TTTTCAATTCAACTTAGCTA+GGG | + | chr3.4:71811482-71811501 | MS.gene031852:intron | 25.0% |
| !! | TTTTGCTCAATCTTGTATTT+AGG | + | chr3.4:71813299-71813318 | MS.gene031852:intron | 25.0% |
| !!! | ATATGTTTTTAACAATGCAG+GGG | + | chr3.4:71811994-71812013 | MS.gene031852:intron | 25.0% |
| !!! | CATACTCATTGTCAATTTTT+TGG | + | chr3.4:71813168-71813187 | MS.gene031852:intron | 25.0% |
| !!! | TACTCATTGTCAATTTTTTG+GGG | + | chr3.4:71813170-71813189 | MS.gene031852:intron | 25.0% |
| !!! | TGATCCTGATTTATTTTTCA+AGG | + | chr3.4:71812810-71812829 | MS.gene031852:CDS | 25.0% |
| !!! | TTAGTACTTTTTTCTGTTAG+TGG | - | chr3.4:71811765-71811784 | None:intergenic | 25.0% |
| ACAGAAATGGAGTATATAGA+AGG | + | chr3.4:71812079-71812098 | MS.gene031852:CDS | 30.0% | |
| ACTTAAGAAGATCAAACTCA+GGG | + | chr3.4:71812927-71812946 | MS.gene031852:CDS | 30.0% | |
| TCTTCTTATATGAGTTCACT+TGG | + | chr3.4:71812052-71812071 | MS.gene031852:CDS | 30.0% | |
| TTGCTTGAAGAAGTTATGAA+AGG | + | chr3.4:71813336-71813355 | MS.gene031852:CDS | 30.0% | |
| ! | AGTCTCTCACATTTTCATAT+GGG | - | chr3.4:71811831-71811850 | None:intergenic | 30.0% |
| ! | CACATCCAAAAATGATGTTT+TGG | - | chr3.4:71812710-71812729 | None:intergenic | 30.0% |
| ! | CTAGCTAAGTTGAATTGAAA+AGG | - | chr3.4:71811483-71811502 | None:intergenic | 30.0% |
| ! | CTTTTCAATTCAACTTAGCT+AGG | + | chr3.4:71811481-71811500 | MS.gene031852:intron | 30.0% |
| ! | TAGTCTCTCACATTTTCATA+TGG | - | chr3.4:71811832-71811851 | None:intergenic | 30.0% |
| !! | GGATGATGGATATATATACA+TGG | + | chr3.4:71813389-71813408 | MS.gene031852:CDS | 30.0% |
| !! | TTCTGTTAGTGGACTAAATT+GGG | - | chr3.4:71811754-71811773 | None:intergenic | 30.0% |
| !! | TTTCTGTTAGTGGACTAAAT+TGG | - | chr3.4:71811755-71811774 | None:intergenic | 30.0% |
| AAAAGGGAATAAATACCGAG+AGG | - | chr3.4:71811460-71811479 | None:intergenic | 35.0% | |
| AACATTTGCATCTTGAGAAG+GGG | - | chr3.4:71811660-71811679 | None:intergenic | 35.0% | |
| AACCACTATCTAGATGCAAA+CGG | - | chr3.4:71812369-71812388 | None:intergenic | 35.0% | |
| AGACAAATTCTCCAACTCAA+TGG | - | chr3.4:71812035-71812054 | None:intergenic | 35.0% | |
| CACTTAAGAAGATCAAACTC+AGG | + | chr3.4:71812926-71812945 | MS.gene031852:CDS | 35.0% | |
| CTACCAAGTATATCATGACA+TGG | - | chr3.4:71813072-71813091 | None:intergenic | 35.0% | |
| CTTAAGAAGATCAAACTCAG+GGG | + | chr3.4:71812928-71812947 | MS.gene031852:CDS | 35.0% | |
| GAAAGGCTCTCTTAGTAATA+AGG | + | chr3.4:71813353-71813372 | MS.gene031852:CDS | 35.0% | |
| GAACATTTGCATCTTGAGAA+GGG | - | chr3.4:71811661-71811680 | None:intergenic | 35.0% | |
| GAAGAAGAATCAGACTTGAT+CGG | - | chr3.4:71811385-71811404 | None:intergenic | 35.0% | |
| GAATATCTAAATAGGCTGAG+AGG | + | chr3.4:71812991-71813010 | MS.gene031852:CDS | 35.0% | |
| GTTCACAATAAAGTTCCACA+GGG | + | chr3.4:71811677-71811696 | MS.gene031852:CDS | 35.0% | |
| GTTCCATGTCATGATATACT+TGG | + | chr3.4:71813066-71813085 | MS.gene031852:intron | 35.0% | |
| TAAACACCAATCTCTCCTAA+AGG | - | chr3.4:71812409-71812428 | None:intergenic | 35.0% | |
| TCTGATCTCAAACTGAAATC+AGG | - | chr3.4:71812172-71812191 | None:intergenic | 35.0% | |
| TGAACATTTGCATCTTGAGA+AGG | - | chr3.4:71811662-71811681 | None:intergenic | 35.0% | |
| TGTTCACAATAAAGTTCCAC+AGG | + | chr3.4:71811676-71811695 | MS.gene031852:CDS | 35.0% | |
| TTCACTTGGATTCACAGAAA+TGG | + | chr3.4:71812066-71812085 | MS.gene031852:CDS | 35.0% | |
| TTGTATTTAGGTGACTGACA+AGG | + | chr3.4:71813311-71813330 | MS.gene031852:intron | 35.0% | |
| ! | AGAAGCATGTTTCGAATTTC+CGG | - | chr3.4:71812614-71812633 | None:intergenic | 35.0% |
| ! | AGTGCCCAAAACATCATTTT+TGG | + | chr3.4:71812702-71812721 | MS.gene031852:CDS | 35.0% |
| ! | ATTTCAGTTTGAGATCAGAC+GGG | + | chr3.4:71812173-71812192 | MS.gene031852:CDS | 35.0% |
| ! | GATTTCAGTTTGAGATCAGA+CGG | + | chr3.4:71812172-71812191 | MS.gene031852:CDS | 35.0% |
| !! | AAAAATGATGTTTTGGGCAC+TGG | - | chr3.4:71812703-71812722 | None:intergenic | 35.0% |
| !! | AGAACTGGCTTCGATTTTAT+TGG | + | chr3.4:71813496-71813515 | MS.gene031852:CDS | 35.0% |
| !! | GGTTGATACTTGATTTTCAC+GGG | + | chr3.4:71813230-71813249 | MS.gene031852:intron | 35.0% |
| !! | GTGATTATGCTACTGCTTTT+GGG | + | chr3.4:71812953-71812972 | MS.gene031852:CDS | 35.0% |
| !!! | GGGTTGATACTTGATTTTCA+CGG | + | chr3.4:71813229-71813248 | MS.gene031852:intron | 35.0% |
| !!! | TTGTCAATTTTTTGGGGCTT+TGG | + | chr3.4:71813176-71813195 | MS.gene031852:intron | 35.0% |
| AAAGCAACCCAAAATTCAGC+AGG | + | chr3.4:71812141-71812160 | MS.gene031852:CDS | 40.0% | |
| AAGAATCAGACTTGATCGGA+AGG | - | chr3.4:71811381-71811400 | None:intergenic | 40.0% | |
| ACCACTATCTAGATGCAAAC+GGG | - | chr3.4:71812368-71812387 | None:intergenic | 40.0% | |
| ACTCTCTTTAGATGCCAACT+CGG | - | chr3.4:71812551-71812570 | None:intergenic | 40.0% | |
| ACTTACTTAATTGGGTCGCA+AGG | + | chr3.4:71811872-71811891 | MS.gene031852:intron | 40.0% | |
| ATGGTGACAAGTTAACCGAA+GGG | + | chr3.4:71812638-71812657 | MS.gene031852:CDS | 40.0% | |
| CAGGGCAATCCAATATCATT+AGG | + | chr3.4:71811549-71811568 | MS.gene031852:CDS | 40.0% | |
| CGGGTTGTTGAATTCATCAT+GGG | - | chr3.4:71812349-71812368 | None:intergenic | 40.0% | |
| GGCTCTCTTAGTAATAAGGA+TGG | + | chr3.4:71813357-71813376 | MS.gene031852:CDS | 40.0% | |
| TATATCCATCATCCCTGACT+CGG | - | chr3.4:71813383-71813402 | None:intergenic | 40.0% | |
| TATCAACGTCTTGGCAAGAT+AGG | + | chr3.4:71812847-71812866 | MS.gene031852:CDS | 40.0% | |
| TCCATCACTCTTTCAGCTAT+AGG | - | chr3.4:71812433-71812452 | None:intergenic | 40.0% | |
| TCCTATAGCTGAAAGAGTGA+TGG | + | chr3.4:71812429-71812448 | MS.gene031852:CDS | 40.0% | |
| TCGAAACATGCTTCTTCTGA+TGG | + | chr3.4:71812619-71812638 | MS.gene031852:CDS | 40.0% | |
| TGATGAAAAGGCCATTGAGT+TGG | + | chr3.4:71812021-71812040 | MS.gene031852:CDS | 40.0% | |
| TTCGAGATTGAATCATGCGT+TGG | - | chr3.4:71811599-71811618 | None:intergenic | 40.0% | |
| ! | AAAGTTGCGAGGTACCAAAT+TGG | - | chr3.4:71811724-71811743 | None:intergenic | 40.0% |
| ! | AAGTTGCGAGGTACCAAATT+GGG | - | chr3.4:71811723-71811742 | None:intergenic | 40.0% |
| ! | ACGGGTTGTTGAATTCATCA+TGG | - | chr3.4:71812350-71812369 | None:intergenic | 40.0% |
| ! | CGTGATTATGCTACTGCTTT+TGG | + | chr3.4:71812952-71812971 | MS.gene031852:CDS | 40.0% |
| ! | CTCAATGGCCTTTTCATCAT+TGG | - | chr3.4:71812020-71812039 | None:intergenic | 40.0% |
| ! | GATTTTCACGGGAATGTGTT+TGG | + | chr3.4:71813241-71813260 | MS.gene031852:intron | 40.0% |
| ! | TTTCAGTTTGAGATCAGACG+GGG | + | chr3.4:71812174-71812193 | MS.gene031852:CDS | 40.0% |
| ACCAGACCATAGATGAGAAC+TGG | + | chr3.4:71813481-71813500 | MS.gene031852:CDS | 45.0% | |
| ACCCGTTTGCATCTAGATAG+TGG | + | chr3.4:71812364-71812383 | MS.gene031852:CDS | 45.0% | |
| ATTCATCATGGGAGCTGAAG+TGG | - | chr3.4:71812338-71812357 | None:intergenic | 45.0% | |
| CAAGCTTCTGATTCTTGCGT+CGG | + | chr3.4:71812523-71812542 | MS.gene031852:CDS | 45.0% | |
| GATAAGGCCGTGAGTAGTAA+AGG | + | chr3.4:71812760-71812779 | MS.gene031852:CDS | 45.0% | |
| GATGGTGACAAGTTAACCGA+AGG | + | chr3.4:71812637-71812656 | MS.gene031852:CDS | 45.0% | |
| GCGTCTTGGCCTAATGATAT+TGG | - | chr3.4:71811561-71811580 | None:intergenic | 45.0% | |
| GGAAGCTTCGATTGGATTAC+AGG | + | chr3.4:71812111-71812130 | MS.gene031852:CDS | 45.0% | |
| GGAATGAACCGATGTAGTTG+TGG | - | chr3.4:71812317-71812336 | None:intergenic | 45.0% | |
| GGGAATAAATACCGAGAGGA+CGG | - | chr3.4:71811456-71811475 | None:intergenic | 45.0% | |
| GTATATAGAAGGCAACCGAG+CGG | + | chr3.4:71812090-71812109 | MS.gene031852:CDS | 45.0% | |
| TAATAAGGATGGCCGAGTCA+GGG | + | chr3.4:71813368-71813387 | MS.gene031852:CDS | 45.0% | |
| TCGAAGCCAGTTCTCATCTA+TGG | - | chr3.4:71813490-71813509 | None:intergenic | 45.0% | |
| TGATTCTTCTTCTTCCCCAC+CGG | + | chr3.4:71811393-71811412 | MS.gene031852:CDS | 45.0% | |
| TTCGTGTGCCACAACTACAT+CGG | + | chr3.4:71812306-71812325 | MS.gene031852:CDS | 45.0% | |
| ! | AGGCTCAACCTGCTGAATTT+TGG | - | chr3.4:71812152-71812171 | None:intergenic | 45.0% |
| ! | CTGGCTTCGATTTTATTGGC+AGG | + | chr3.4:71813500-71813519 | MS.gene031852:CDS | 45.0% |
| ! | GCTGAACCTTTAGGAGAGAT+TGG | + | chr3.4:71812400-71812419 | MS.gene031852:CDS | 45.0% |
| ! | GGCAAGCTTTATCAACGTCT+TGG | + | chr3.4:71812838-71812857 | MS.gene031852:CDS | 45.0% |
| ! | GGCTCAACCTGCTGAATTTT+GGG | - | chr3.4:71812151-71812170 | None:intergenic | 45.0% |
| ! | TTACTACTCACGGCCTTATC+TGG | - | chr3.4:71812760-71812779 | None:intergenic | 45.0% |
| ! | TTCAGTTTGAGATCAGACGG+GGG | + | chr3.4:71812175-71812194 | MS.gene031852:CDS | 45.0% |
| AGAAGGGGCAATAACAGTGC+TGG | - | chr3.4:71811645-71811664 | None:intergenic | 50.0% | |
| ATCCAATCGAAGCTTCCGCT+CGG | - | chr3.4:71812108-71812127 | None:intergenic | 50.0% | |
| ATCCAGCTCCTTCCACTTCT+GGG | - | chr3.4:71813454-71813473 | None:intergenic | 50.0% | |
| ATCTGCAGGCTCTTTCCCTT+CGG | - | chr3.4:71812656-71812675 | None:intergenic | 50.0% | |
| CATGTTGTCCCAGAAGTGGA+AGG | + | chr3.4:71813443-71813462 | MS.gene031852:CDS | 50.0% | |
| CGACGAGCCTTTACTACTCA+CGG | - | chr3.4:71812770-71812789 | None:intergenic | 50.0% | |
| CGTGAGTAGTAAAGGCTCGT+CGG | + | chr3.4:71812768-71812787 | MS.gene031852:CDS | 50.0% | |
| CTCACATGTTGTCCCAGAAG+TGG | + | chr3.4:71813439-71813458 | MS.gene031852:CDS | 50.0% | |
| GATGTAGTTGTGGCACACGA+AGG | - | chr3.4:71812307-71812326 | None:intergenic | 50.0% | |
| GCCAGTTCTCATCTATGGTC+TGG | - | chr3.4:71813485-71813504 | None:intergenic | 50.0% | |
| GGGTCGCAAGGAAATTGTCA+GGG | + | chr3.4:71811884-71811903 | MS.gene031852:intron | 50.0% | |
| GGTACCTCGCAACTTTCTTG+CGG | + | chr3.4:71811728-71811747 | MS.gene031852:intron | 50.0% | |
| GTAATAAGGATGGCCGAGTC+AGG | + | chr3.4:71813367-71813386 | MS.gene031852:CDS | 50.0% | |
| TATGTTGCCGAGGAGAGCTA+CGG | + | chr3.4:71812210-71812229 | MS.gene031852:CDS | 50.0% | |
| TCAACCAGCGACACAGTCTT+CGG | + | chr3.4:71812273-71812292 | MS.gene031852:CDS | 50.0% | |
| TGACGAAGAATCGTGCGTCT+TGG | - | chr3.4:71811575-71811594 | None:intergenic | 50.0% | |
| TGAGTTGCTCTATGTTGCCG+AGG | + | chr3.4:71812200-71812219 | MS.gene031852:CDS | 50.0% | |
| TGCAGGGGCCAATGATGAAA+AGG | + | chr3.4:71812009-71812028 | MS.gene031852:intron | 50.0% | |
| TGGGTCGCAAGGAAATTGTC+AGG | + | chr3.4:71811883-71811902 | MS.gene031852:intron | 50.0% | |
| TGTACGTGAGCAACATCTGC+AGG | - | chr3.4:71812670-71812689 | None:intergenic | 50.0% | |
| ! | TCTAGATAGTGGTTTGCGCG+TGG | + | chr3.4:71812375-71812394 | MS.gene031852:CDS | 50.0% |
| AACCGAGCGGAAGCTTCGAT+TGG | + | chr3.4:71812103-71812122 | MS.gene031852:CDS | 55.0% | |
| ACAACCGAAGACTGTGTCGC+TGG | - | chr3.4:71812280-71812299 | None:intergenic | 55.0% | |
| AGCGACACAGTCTTCGGTTG+TGG | + | chr3.4:71812279-71812298 | MS.gene031852:CDS | 55.0% | |
| CAGAAGTGGAAGGAGCTGGA+TGG | + | chr3.4:71813453-71813472 | MS.gene031852:CDS | 55.0% | |
| CATCCAGCTCCTTCCACTTC+TGG | - | chr3.4:71813455-71813474 | None:intergenic | 55.0% | |
| CGAGGAGAGCTACGGTTACA+CGG | + | chr3.4:71812218-71812237 | MS.gene031852:CDS | 55.0% | |
| CGCGTGGTTGCTGAACCTTT+AGG | + | chr3.4:71812391-71812410 | MS.gene031852:CDS | 55.0% | |
| CGTCTTGGCAAGATAGGCAG+TGG | + | chr3.4:71812853-71812872 | MS.gene031852:CDS | 55.0% | |
| CGTGTAACCGTAGCTCTCCT+CGG | - | chr3.4:71812220-71812239 | None:intergenic | 55.0% | |
| CTTGGCAAGATAGGCAGTGG+TGG | + | chr3.4:71812856-71812875 | MS.gene031852:CDS | 55.0% | |
| GAGGAGAGCTACGGTTACAC+GGG | + | chr3.4:71812219-71812238 | MS.gene031852:CDS | 55.0% | |
| GCGACACAGTCTTCGGTTGT+GGG | + | chr3.4:71812280-71812299 | MS.gene031852:CDS | 55.0% | |
| GCTCGTCGGTCGCTAAGAAA+AGG | + | chr3.4:71812782-71812801 | MS.gene031852:CDS | 55.0% | |
| TGGAAGCAGTGAGGTGCACA+AGG | + | chr3.4:71812876-71812895 | MS.gene031852:CDS | 55.0% | |
| TGTTGCTCACGTACAGCGTC+AGG | + | chr3.4:71812675-71812694 | MS.gene031852:CDS | 55.0% | |
| ! | TTGAAGCGTCACCGTCCTCT+CGG | + | chr3.4:71811442-71811461 | MS.gene031852:CDS | 55.0% |
| AGGACGGTGACGCTTCAAGG+CGG | - | chr3.4:71811440-71811459 | None:intergenic | 60.0% | |
| GAGAGGACGGTGACGCTTCA+AGG | - | chr3.4:71811443-71811462 | None:intergenic | 60.0% | |
| GATGGCCGAGTCAGGGATGA+TGG | + | chr3.4:71813375-71813394 | MS.gene031852:CDS | 60.0% | |
| GCTTCAAGGCGGCTTGAACG+TGG | - | chr3.4:71811429-71811448 | None:intergenic | 60.0% | |
| GTCCCAGAAGTGGAAGGAGC+TGG | + | chr3.4:71813449-71813468 | MS.gene031852:CDS | 60.0% | |
| TCAAGGCGGCTTGAACGTGG+CGG | - | chr3.4:71811426-71811445 | None:intergenic | 60.0% | |
| TGGGCCGCAAGAAAGTTGCG+AGG | - | chr3.4:71811735-71811754 | None:intergenic | 60.0% | |
| ! | AGGCAGTGGTGGAAGCAGTG+AGG | + | chr3.4:71812867-71812886 | MS.gene031852:CDS | 60.0% |
| ! | TGAACGTGGCGGAGGAAGTC+CGG | - | chr3.4:71811415-71811434 | None:intergenic | 60.0% |
| !! | TTCTTGCGTCGGTGCCGAGT+TGG | + | chr3.4:71812534-71812553 | MS.gene031852:CDS | 60.0% |
| AGGCGGCTTGAACGTGGCGG+AGG | - | chr3.4:71811423-71811442 | None:intergenic | 70.0% | |
| ! | ACGTGGCGGAGGAAGTCCGG+TGG | - | chr3.4:71811412-71811431 | None:intergenic | 70.0% |
| ! | CGTGGCGGAGGAAGTCCGGT+GGG | - | chr3.4:71811411-71811430 | None:intergenic | 70.0% |
| ! | GTGGCGGAGGAAGTCCGGTG+GGG | - | chr3.4:71811410-71811429 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.4 | gene | 71811361 | 71813557 | 71811361 | ID=MS.gene031852 |
| chr3.4 | mRNA | 71811361 | 71813557 | 71811361 | ID=MS.gene031852.t1;Parent=MS.gene031852 |
| chr3.4 | exon | 71811361 | 71811463 | 71811361 | ID=MS.gene031852.t1.exon1;Parent=MS.gene031852.t1 |
| chr3.4 | CDS | 71811361 | 71811463 | 71811361 | ID=cds.MS.gene031852.t1;Parent=MS.gene031852.t1 |
| chr3.4 | exon | 71811546 | 71811698 | 71811546 | ID=MS.gene031852.t1.exon2;Parent=MS.gene031852.t1 |
| chr3.4 | CDS | 71811546 | 71811698 | 71811546 | ID=cds.MS.gene031852.t1;Parent=MS.gene031852.t1 |
| chr3.4 | exon | 71812014 | 71813047 | 71812014 | ID=MS.gene031852.t1.exon3;Parent=MS.gene031852.t1 |
| chr3.4 | CDS | 71812014 | 71813047 | 71812014 | ID=cds.MS.gene031852.t1;Parent=MS.gene031852.t1 |
| chr3.4 | exon | 71813321 | 71813557 | 71813321 | ID=MS.gene031852.t1.exon4;Parent=MS.gene031852.t1 |
| chr3.4 | CDS | 71813321 | 71813557 | 71813321 | ID=cds.MS.gene031852.t1;Parent=MS.gene031852.t1 |
| Gene Sequence |
| Protein sequence |
