Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene25010.t1 | XP_013444510.1 | 96.2 | 263 | 7 | 1 | 96 | 358 | 92 | 351 | 1.30E-141 | 513.1 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene25010.t1 | Q7TND5 | 52.0 | 252 | 96 | 3 | 96 | 346 | 109 | 336 | 3.2e-64 | 247.3 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene25010.t1 | A0A072TYA8 | 96.2 | 263 | 7 | 1 | 96 | 358 | 92 | 351 | 9.3e-142 | 513.1 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene25010.t1 | MTR_8g023820 | 97.399 | 346 | 5 | 1 | 1 | 346 | 1 | 342 | 0.0 | 689 |
MS.gene25010.t1 | MTR_3g019370 | 32.192 | 292 | 142 | 8 | 70 | 358 | 50 | 288 | 5.13e-37 | 137 |
MS.gene25010.t1 | MTR_1g087510 | 64.103 | 78 | 9 | 2 | 33 | 110 | 2 | 60 | 6.31e-20 | 87.0 |
MS.gene25010.t1 | MTR_1g054855 | 80.357 | 56 | 11 | 0 | 40 | 95 | 1 | 56 | 1.16e-19 | 82.8 |
MS.gene25010.t1 | MTR_8g066245 | 47.436 | 78 | 37 | 1 | 33 | 110 | 2 | 75 | 2.19e-11 | 60.1 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene25010.t1 | AT4G01560 | 72.754 | 345 | 79 | 4 | 3 | 346 | 1 | 331 | 2.14e-178 | 501 |
MS.gene25010.t1 | AT1G63780 | 37.551 | 245 | 122 | 7 | 117 | 358 | 73 | 289 | 1.55e-40 | 146 |
Find 112 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TCAGATGCTCTCTTGATTAT+TGG | 0.136869 | 8.1:-77022440 | MS.gene25010:intron |
CCCCAAGATCCCGAGTTTAA+AGG | 0.228228 | 8.1:-77021534 | MS.gene25010:CDS |
CCCTTTAAACTCGGGATCTT+GGG | 0.231737 | 8.1:+77021533 | None:intergenic |
TTCCGTTTCTGTTTCCGTTC+TGG | 0.284839 | 8.1:+77024661 | None:intergenic |
GCCCTTTAAACTCGGGATCT+TGG | 0.298570 | 8.1:+77021532 | None:intergenic |
TAAAACAATTGCCCGTCTTC+AGG | 0.332177 | 8.1:-77021283 | MS.gene25010:intron |
GCAAGTGGTGATTAATATCT+TGG | 0.337449 | 8.1:+77022995 | None:intergenic |
TGCTGTTCGTCCGAGGTGTC+GGG | 0.340420 | 8.1:-77018737 | MS.gene25010:CDS |
ATTTGTTTGCAGCTATTTGC+TGG | 0.345769 | 8.1:-77023065 | MS.gene25010:intron |
TGTTGAATATGCAAATAAAA+AGG | 0.345995 | 8.1:-77022596 | MS.gene25010:CDS |
GGTCTTCGGCACTTTCTTCT+CGG | 0.348235 | 8.1:+77024360 | None:intergenic |
TTTAATATCAGAATTGCTTC+AGG | 0.350037 | 8.1:-77022747 | MS.gene25010:CDS |
GTGCTGTTCGTCCGAGGTGT+CGG | 0.351623 | 8.1:-77018738 | MS.gene25010:CDS |
AAATGAGCAGTAGGTCCTTC+AGG | 0.362193 | 8.1:+77022413 | None:intergenic |
CTCTTGAAGTAATGTGCATT+TGG | 0.364971 | 8.1:+77022719 | None:intergenic |
CCCAAGATCCCGAGTTTAAA+GGG | 0.366033 | 8.1:-77021533 | MS.gene25010:CDS |
TAATAAAGTTGTGTTTCATA+AGG | 0.409088 | 8.1:+77016000 | None:intergenic |
GTTGCCTACGCGCTCTCCTA+CGG | 0.415130 | 8.1:+77018776 | None:intergenic |
GTCTTCGGCACTTTCTTCTC+GGG | 0.418907 | 8.1:+77024361 | None:intergenic |
CTTCTAATACTCAGCGCGTA+AGG | 0.419527 | 8.1:-77018816 | MS.gene25010:intron |
AACTCAACCTCTTCATCATC+AGG | 0.420118 | 8.1:+77024298 | None:intergenic |
TGTGTCTCCTTGCAGAATCA+TGG | 0.427442 | 8.1:-77021975 | MS.gene25010:intron |
GAAAGAAATGAAAGAGGAAT+GGG | 0.429855 | 8.1:-77016033 | MS.gene25010:intron |
TCCGGCTGCTGCTCGACATC+AGG | 0.432238 | 8.1:+77018685 | None:intergenic |
TCTATGTCCTCTTGCTGATC+CGG | 0.434784 | 8.1:+77018667 | None:intergenic |
ACTCAGCGCGTAAGGGAGGC+AGG | 0.452895 | 8.1:-77018808 | MS.gene25010:intron |
AGCTCAGGCTGGTGACTGGT+TGG | 0.478829 | 8.1:+77021948 | None:intergenic |
TTGCCTACGCGCTCTCCTAC+GGG | 0.479337 | 8.1:+77018777 | None:intergenic |
CACTTGCCGCTTCAATTCTA+CGG | 0.479733 | 8.1:-77022979 | MS.gene25010:intron |
GCTCAGGCTGGTGACTGGTT+GGG | 0.480294 | 8.1:+77021949 | None:intergenic |
ATACGTTGCAACTCCACATC+AGG | 0.481403 | 8.1:+77018634 | None:intergenic |
TGTCAAATGTTCCATGCTGC+AGG | 0.481553 | 8.1:+77020371 | None:intergenic |
AGAAAGAAATGAAAGAGGAA+TGG | 0.484895 | 8.1:-77016034 | MS.gene25010:intron |
ATATGAAGTCTCTCTGGTTG+TGG | 0.489756 | 8.1:+77021493 | None:intergenic |
AACCAGAACGGAAACAGAAA+CGG | 0.491238 | 8.1:-77024663 | MS.gene25010:CDS |
CGAAGACCATTGAAAATACA+AGG | 0.491940 | 8.1:-77024345 | MS.gene25010:CDS |
AGAGAGACTTCATATTCTTC+CGG | 0.494821 | 8.1:-77021485 | MS.gene25010:CDS |
TACACGTCGCCCTTTAAACT+CGG | 0.500125 | 8.1:+77021524 | None:intergenic |
CACAAGCTCAGGCTGGTGAC+TGG | 0.500662 | 8.1:+77021944 | None:intergenic |
CAAGTGGTGATTAATATCTT+GGG | 0.501651 | 8.1:+77022996 | None:intergenic |
AGTTGTGTTTCATAAGGTCC+AGG | 0.502491 | 8.1:+77016006 | None:intergenic |
CTTCTTCTGATGCTTAAGCT+TGG | 0.508564 | 8.1:+77024577 | None:intergenic |
AAGTTGTTCAACACAAGCTC+AGG | 0.513960 | 8.1:+77021933 | None:intergenic |
CCTTTAAACTCGGGATCTTG+GGG | 0.514110 | 8.1:+77021534 | None:intergenic |
TTGATTATTGGCTTACCTGA+AGG | 0.520117 | 8.1:-77022428 | MS.gene25010:CDS |
CCTACTTGGTTCCCTCCGAT+TGG | 0.521655 | 8.1:+77022546 | None:intergenic |
TCATATTCTTCCGGCATCAT+CGG | 0.521685 | 8.1:-77021476 | MS.gene25010:intron |
GGAAGAATATGAAGTCTCTC+TGG | 0.523080 | 8.1:+77021487 | None:intergenic |
TCCTGATGTCGAGCAGCAGC+CGG | 0.524992 | 8.1:-77018686 | MS.gene25010:CDS |
TTGTAGTTGTACACACCAAT+CGG | 0.528856 | 8.1:-77022561 | MS.gene25010:CDS |
GAAAGAGGAATGGGACAACC+TGG | 0.531755 | 8.1:-77016024 | MS.gene25010:CDS |
AGCAATTCTGATATTAAAGC+AGG | 0.533676 | 8.1:+77022752 | None:intergenic |
AGGCAACAGATGGAGGTTGA+AGG | 0.536362 | 8.1:-77018760 | MS.gene25010:CDS |
AACAACTTCACAACACGCCT+AGG | 0.543084 | 8.1:-77021918 | MS.gene25010:CDS |
TCTTTGTTCTTAATCATCGA+AGG | 0.545212 | 8.1:+77024620 | None:intergenic |
GGAACATTTGACACTAAAAG+TGG | 0.547527 | 8.1:-77020361 | MS.gene25010:CDS |
TTTATTAAGCTCCCACAGCT+AGG | 0.547610 | 8.1:-77015984 | MS.gene25010:CDS |
CTAAAAGTGGAGAATATGAG+TGG | 0.547620 | 8.1:-77020348 | MS.gene25010:CDS |
GAGAGCGCGTAGGCAACAGA+TGG | 0.549926 | 8.1:-77018770 | MS.gene25010:CDS |
ATTGACACCAACCTGAAGAC+GGG | 0.550528 | 8.1:+77021272 | None:intergenic |
TATCCGTGTGGACCTAGCTG+TGG | 0.558789 | 8.1:+77015972 | None:intergenic |
ATCCGTGTGGACCTAGCTGT+GGG | 0.560558 | 8.1:+77015973 | None:intergenic |
TTCTAATACTCAGCGCGTAA+GGG | 0.563393 | 8.1:-77018815 | MS.gene25010:intron |
CAATGGCGATCGGTGGAAAG+AGG | 0.566083 | 8.1:-77024733 | MS.gene25010:CDS |
GTGAGTTTGAAATGAGCAGT+AGG | 0.571962 | 8.1:+77022404 | None:intergenic |
TCAGCAAGAGGACATAGAGC+AGG | 0.573205 | 8.1:-77018662 | MS.gene25010:CDS |
TTCGGCACTTTCTTCTCGGG+AGG | 0.582321 | 8.1:+77024364 | None:intergenic |
AAGAATTGTACCGATGATGC+CGG | 0.586114 | 8.1:+77021466 | None:intergenic |
GTTAAAAGAGCTATTGAGCT+CGG | 0.586757 | 8.1:-77024515 | MS.gene25010:CDS |
AATTGACACCAACCTGAAGA+CGG | 0.586946 | 8.1:+77021271 | None:intergenic |
TGTTCTTAATCATCGAAGGA+CGG | 0.587385 | 8.1:+77024624 | None:intergenic |
CCGAGGTGTCGGGGTGCTAG+AGG | 0.593742 | 8.1:-77018727 | MS.gene25010:CDS |
TTGCAAGCCTGATGATGAAG+AGG | 0.594460 | 8.1:-77024305 | MS.gene25010:intron |
GAAGTCTCTCTGGTTGTGGA+AGG | 0.594781 | 8.1:+77021497 | None:intergenic |
TGTTCAACACAAGCTCAGGC+TGG | 0.595435 | 8.1:+77021937 | None:intergenic |
AATTCAGTTCAATATTAAAG+CGG | 0.596200 | 8.1:-77023028 | MS.gene25010:CDS |
ACCTTCCAACTCGATGCCCT+AGG | 0.597115 | 8.1:+77021901 | None:intergenic |
AGAATATGAGTGGGTTCACA+AGG | 0.597660 | 8.1:-77020338 | MS.gene25010:intron |
GCAGCAGCCGGATCAGCAAG+AGG | 0.600033 | 8.1:-77018674 | MS.gene25010:CDS |
TGTTTAGAAAGAAATGAAAG+AGG | 0.601940 | 8.1:-77016039 | MS.gene25010:intron |
TTGAAGGTGCTGTTCGTCCG+AGG | 0.605997 | 8.1:-77018744 | MS.gene25010:CDS |
TTAATCATCGAAGGACGGAA+CGG | 0.607288 | 8.1:+77024629 | None:intergenic |
CTCAGCGCGTAAGGGAGGCA+GGG | 0.608325 | 8.1:-77018807 | MS.gene25010:intron |
CGTAGAATTGAAGCGGCAAG+TGG | 0.609118 | 8.1:+77022980 | None:intergenic |
GTTATTCCTACAATGGCGAT+CGG | 0.609248 | 8.1:-77024743 | None:intergenic |
AGCTATTGAGCTCGGCGAAG+AGG | 0.611918 | 8.1:-77024507 | MS.gene25010:intron |
GGAAACAGAAACGGAAACGA+AGG | 0.613209 | 8.1:-77024654 | MS.gene25010:CDS |
GCTGTTCGTCCGAGGTGTCG+GGG | 0.613830 | 8.1:-77018736 | MS.gene25010:CDS |
AACATACCGTAGAATTGAAG+CGG | 0.614066 | 8.1:+77022973 | None:intergenic |
CTCCCACAGCTAGGTCCACA+CGG | 0.615154 | 8.1:-77015975 | MS.gene25010:CDS |
AGAGCAGGAGATGCCTGATG+TGG | 0.621665 | 8.1:-77018647 | MS.gene25010:CDS |
TAATACTCAGCGCGTAAGGG+AGG | 0.622483 | 8.1:-77018812 | MS.gene25010:intron |
TTAACTTCAATGTGAAACGA+GGG | 0.623098 | 8.1:+77020398 | None:intergenic |
ACACGTCGCCCTTTAAACTC+GGG | 0.626716 | 8.1:+77021525 | None:intergenic |
GCCTAGGGCATCGAGTTGGA+AGG | 0.627771 | 8.1:-77021902 | MS.gene25010:intron |
ACACGCCTAGGGCATCGAGT+TGG | 0.629464 | 8.1:-77021906 | MS.gene25010:CDS |
ACAACTTCACAACACGCCTA+GGG | 0.637320 | 8.1:-77021917 | MS.gene25010:CDS |
AGGCAGGGCATGCTTCCCGT+AGG | 0.639626 | 8.1:-77018792 | MS.gene25010:CDS |
AGCGCGTAGGCAACAGATGG+AGG | 0.639644 | 8.1:-77018767 | MS.gene25010:CDS |
CCTCTAGCACCCCGACACCT+CGG | 0.645603 | 8.1:+77018727 | None:intergenic |
ATTCCTACAATGGCGATCGG+TGG | 0.646182 | 8.1:-77024740 | None:intergenic |
AATGCACATTACTTCAAGAG+AGG | 0.646448 | 8.1:-77022716 | MS.gene25010:CDS |
AAGCGCAACAATGATTCAGA+CGG | 0.648847 | 8.1:-77024710 | MS.gene25010:CDS |
CTCCTTCAAGCTTATCCGTG+TGG | 0.660323 | 8.1:+77015960 | None:intergenic |
TAGTTGTACACACCAATCGG+AGG | 0.665484 | 8.1:-77022558 | MS.gene25010:CDS |
TAAAAGTGGAGAATATGAGT+GGG | 0.666851 | 8.1:-77020347 | MS.gene25010:CDS |
CTTTAAACTCGGGATCTTGG+GGG | 0.666978 | 8.1:+77021535 | None:intergenic |
CATCAGGATCGACATCAGCA+TGG | 0.669016 | 8.1:+77018701 | None:intergenic |
TTTAACTTCAATGTGAAACG+AGG | 0.679925 | 8.1:+77020397 | None:intergenic |
AGTTGTACACACCAATCGGA+GGG | 0.688476 | 8.1:-77022557 | MS.gene25010:CDS |
GAAGACCATTGAAAATACAA+GGG | 0.689678 | 8.1:-77024344 | MS.gene25010:CDS |
CTTCCCGTAGGAGAGCGCGT+AGG | 0.735711 | 8.1:-77018780 | MS.gene25010:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr8.1 | gene | 77015971 | 77024753 | 77015971 | ID=MS.gene25010 |
chr8.1 | mRNA | 77015971 | 77024753 | 77015971 | ID=MS.gene25010.t1;Parent=MS.gene25010 |
chr8.1 | exon | 77024508 | 77024753 | 77024508 | ID=MS.gene25010.t1.exon1;Parent=MS.gene25010.t1 |
chr8.1 | CDS | 77024508 | 77024753 | 77024508 | ID=cds.MS.gene25010.t1;Parent=MS.gene25010.t1 |
chr8.1 | exon | 77024306 | 77024386 | 77024306 | ID=MS.gene25010.t1.exon2;Parent=MS.gene25010.t1 |
chr8.1 | CDS | 77024306 | 77024386 | 77024306 | ID=cds.MS.gene25010.t1;Parent=MS.gene25010.t1 |
chr8.1 | exon | 77022980 | 77023075 | 77022980 | ID=MS.gene25010.t1.exon3;Parent=MS.gene25010.t1 |
chr8.1 | CDS | 77022980 | 77023075 | 77022980 | ID=cds.MS.gene25010.t1;Parent=MS.gene25010.t1 |
chr8.1 | exon | 77022697 | 77022780 | 77022697 | ID=MS.gene25010.t1.exon4;Parent=MS.gene25010.t1 |
chr8.1 | CDS | 77022697 | 77022780 | 77022697 | ID=cds.MS.gene25010.t1;Parent=MS.gene25010.t1 |
chr8.1 | exon | 77022551 | 77022620 | 77022551 | ID=MS.gene25010.t1.exon5;Parent=MS.gene25010.t1 |
chr8.1 | CDS | 77022551 | 77022620 | 77022551 | ID=cds.MS.gene25010.t1;Parent=MS.gene25010.t1 |
chr8.1 | exon | 77022376 | 77022458 | 77022376 | ID=MS.gene25010.t1.exon6;Parent=MS.gene25010.t1 |
chr8.1 | CDS | 77022376 | 77022458 | 77022376 | ID=cds.MS.gene25010.t1;Parent=MS.gene25010.t1 |
chr8.1 | exon | 77021903 | 77021982 | 77021903 | ID=MS.gene25010.t1.exon7;Parent=MS.gene25010.t1 |
chr8.1 | CDS | 77021903 | 77021982 | 77021903 | ID=cds.MS.gene25010.t1;Parent=MS.gene25010.t1 |
chr8.1 | exon | 77021477 | 77021575 | 77021477 | ID=MS.gene25010.t1.exon8;Parent=MS.gene25010.t1 |
chr8.1 | CDS | 77021477 | 77021575 | 77021477 | ID=cds.MS.gene25010.t1;Parent=MS.gene25010.t1 |
chr8.1 | exon | 77021284 | 77021392 | 77021284 | ID=MS.gene25010.t1.exon9;Parent=MS.gene25010.t1 |
chr8.1 | CDS | 77021284 | 77021392 | 77021284 | ID=cds.MS.gene25010.t1;Parent=MS.gene25010.t1 |
chr8.1 | exon | 77020339 | 77020428 | 77020339 | ID=MS.gene25010.t1.exon10;Parent=MS.gene25010.t1 |
chr8.1 | CDS | 77020339 | 77020428 | 77020339 | ID=cds.MS.gene25010.t1;Parent=MS.gene25010.t1 |
chr8.1 | exon | 77018638 | 77018824 | 77018638 | ID=MS.gene25010.t1.exon11;Parent=MS.gene25010.t1 |
chr8.1 | CDS | 77018638 | 77018824 | 77018638 | ID=cds.MS.gene25010.t1;Parent=MS.gene25010.t1 |
chr8.1 | exon | 77015971 | 77016050 | 77015971 | ID=MS.gene25010.t1.exon12;Parent=MS.gene25010.t1 |
chr8.1 | CDS | 77015971 | 77016050 | 77015971 | ID=cds.MS.gene25010.t1;Parent=MS.gene25010.t1 |
Gene Sequence |
Protein sequence |