Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene78232.t1 | XP_003622990.1 | 98.8 | 246 | 3 | 0 | 1 | 246 | 1 | 246 | 1.10E-121 | 446 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene78232.t1 | Q9SAI5 | 47.3 | 245 | 127 | 2 | 4 | 246 | 3 | 247 | 1.5e-55 | 217.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene78232.t1 | G7L2C7 | 98.8 | 246 | 3 | 0 | 1 | 246 | 1 | 246 | 7.9e-122 | 446.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049129 | MS.gene78232 | -0.857046 | 2.13E-62 | -1.69E-46 |
| MS.gene049255 | MS.gene78232 | 0.809161 | 2.17E-50 | -1.69E-46 |
| MS.gene049411 | MS.gene78232 | 0.867805 | 1.04E-65 | -1.69E-46 |
| MS.gene049580 | MS.gene78232 | 0.811723 | 6.07E-51 | -1.69E-46 |
| MS.gene049824 | MS.gene78232 | 0.812556 | 3.99E-51 | -1.69E-46 |
| MS.gene049825 | MS.gene78232 | 0.835828 | 1.34E-56 | -1.69E-46 |
| MS.gene049873 | MS.gene78232 | 0.814642 | 1.39E-51 | -1.69E-46 |
| MS.gene050277 | MS.gene78232 | 0.814417 | 1.56E-51 | -1.69E-46 |
| MS.gene050689 | MS.gene78232 | 0.810263 | 1.26E-50 | -1.69E-46 |
| MS.gene050752 | MS.gene78232 | 0.843325 | 1.50E-58 | -1.69E-46 |
| MS.gene050838 | MS.gene78232 | 0.843717 | 1.18E-58 | -1.69E-46 |
| MS.gene050945 | MS.gene78232 | 0.815804 | 7.66E-52 | -1.69E-46 |
| MS.gene050955 | MS.gene78232 | 0.835454 | 1.66E-56 | -1.69E-46 |
| MS.gene050985 | MS.gene78232 | 0.843861 | 1.08E-58 | -1.69E-46 |
| MS.gene051003 | MS.gene78232 | 0.850117 | 2.09E-60 | -1.69E-46 |
| MS.gene051234 | MS.gene78232 | 0.864695 | 1.01E-64 | -1.69E-46 |
| MS.gene05134 | MS.gene78232 | 0.823708 | 1.20E-53 | -1.69E-46 |
| MS.gene051700 | MS.gene78232 | 0.802868 | 4.57E-49 | -1.69E-46 |
| MS.gene051746 | MS.gene78232 | 0.827674 | 1.37E-54 | -1.69E-46 |
| MS.gene051748 | MS.gene78232 | 0.811905 | 5.54E-51 | -1.69E-46 |
| MS.gene05188 | MS.gene78232 | 0.85189 | 6.61E-61 | -1.69E-46 |
| MS.gene051902 | MS.gene78232 | 0.840072 | 1.08E-57 | -1.69E-46 |
| MS.gene051903 | MS.gene78232 | 0.856162 | 3.88E-62 | -1.69E-46 |
| MS.gene051975 | MS.gene78232 | 0.828249 | 9.98E-55 | -1.69E-46 |
| MS.gene052072 | MS.gene78232 | 0.833564 | 4.96E-56 | -1.69E-46 |
| MS.gene052296 | MS.gene78232 | 0.807635 | 4.59E-50 | -1.69E-46 |
| MS.gene052479 | MS.gene78232 | 0.809877 | 1.52E-50 | -1.69E-46 |
| MS.gene052947 | MS.gene78232 | 0.875407 | 3.16E-68 | -1.69E-46 |
| MS.gene053109 | MS.gene78232 | 0.801008 | 1.10E-48 | -1.69E-46 |
| MS.gene053122 | MS.gene78232 | 0.819273 | 1.27E-52 | -1.69E-46 |
| MS.gene053401 | MS.gene78232 | 0.818151 | 2.28E-52 | -1.69E-46 |
| MS.gene05364 | MS.gene78232 | 0.815814 | 7.62E-52 | -1.69E-46 |
| MS.gene053952 | MS.gene78232 | 0.813494 | 2.49E-51 | -1.69E-46 |
| MS.gene054004 | MS.gene78232 | 0.805867 | 1.08E-49 | -1.69E-46 |
| MS.gene054403 | MS.gene78232 | 0.847 | 1.53E-59 | -1.69E-46 |
| MS.gene054413 | MS.gene78232 | 0.812343 | 4.45E-51 | -1.69E-46 |
| MS.gene055162 | MS.gene78232 | 0.81028 | 1.25E-50 | -1.69E-46 |
| MS.gene055555 | MS.gene78232 | 0.864159 | 1.49E-64 | -1.69E-46 |
| MS.gene055765 | MS.gene78232 | 0.81344 | 2.56E-51 | -1.69E-46 |
| MS.gene056043 | MS.gene78232 | -0.80333 | 3.67E-49 | -1.69E-46 |
| MS.gene056075 | MS.gene78232 | 0.85953 | 3.88E-63 | -1.69E-46 |
| MS.gene056091 | MS.gene78232 | 0.81191 | 5.53E-51 | -1.69E-46 |
| MS.gene056631 | MS.gene78232 | 0.813195 | 2.89E-51 | -1.69E-46 |
| MS.gene05689 | MS.gene78232 | 0.810911 | 9.11E-51 | -1.69E-46 |
| MS.gene056986 | MS.gene78232 | 0.828568 | 8.36E-55 | -1.69E-46 |
| MS.gene057094 | MS.gene78232 | 0.840065 | 1.09E-57 | -1.69E-46 |
| MS.gene057102 | MS.gene78232 | 0.854089 | 1.55E-61 | -1.69E-46 |
| MS.gene057234 | MS.gene78232 | 0.816748 | 4.71E-52 | -1.69E-46 |
| MS.gene057694 | MS.gene78232 | 0.809732 | 1.64E-50 | -1.69E-46 |
| MS.gene057705 | MS.gene78232 | 0.870269 | 1.66E-66 | -1.69E-46 |
| MS.gene05781 | MS.gene78232 | 0.844759 | 6.19E-59 | -1.69E-46 |
| MS.gene057999 | MS.gene78232 | 0.813758 | 2.18E-51 | -1.69E-46 |
| MS.gene058074 | MS.gene78232 | 0.810177 | 1.31E-50 | -1.69E-46 |
| MS.gene058149 | MS.gene78232 | 0.807619 | 4.63E-50 | -1.69E-46 |
| MS.gene058245 | MS.gene78232 | 0.838982 | 2.08E-57 | -1.69E-46 |
| MS.gene059146 | MS.gene78232 | 0.860441 | 2.06E-63 | -1.69E-46 |
| MS.gene059227 | MS.gene78232 | 0.836637 | 8.33E-57 | -1.69E-46 |
| MS.gene05985 | MS.gene78232 | -0.819051 | 1.42E-52 | -1.69E-46 |
| MS.gene059901 | MS.gene78232 | -0.819972 | 8.77E-53 | -1.69E-46 |
| MS.gene059935 | MS.gene78232 | 0.80363 | 3.18E-49 | -1.69E-46 |
| MS.gene06001 | MS.gene78232 | 0.827813 | 1.27E-54 | -1.69E-46 |
| MS.gene06011 | MS.gene78232 | 0.866118 | 3.60E-65 | -1.69E-46 |
| MS.gene060365 | MS.gene78232 | 0.802761 | 4.81E-49 | -1.69E-46 |
| MS.gene060429 | MS.gene78232 | 0.828184 | 1.03E-54 | -1.69E-46 |
| MS.gene060586 | MS.gene78232 | 0.803296 | 3.73E-49 | -1.69E-46 |
| MS.gene060763 | MS.gene78232 | 0.90511 | 6.07E-80 | -1.69E-46 |
| MS.gene060830 | MS.gene78232 | 0.846349 | 2.30E-59 | -1.69E-46 |
| MS.gene060935 | MS.gene78232 | 0.819045 | 1.43E-52 | -1.69E-46 |
| MS.gene060937 | MS.gene78232 | 0.81819 | 2.23E-52 | -1.69E-46 |
| MS.gene061100 | MS.gene78232 | 0.806764 | 7.02E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene78232 | MS.gene26979 | PPI |
| MS.gene78232 | MS.gene55098 | PPI |
| MS.gene037074 | MS.gene78232 | PPI |
| MS.gene78232 | MS.gene56166 | PPI |
| MS.gene78232 | MS.gene24260 | PPI |
| MS.gene78232 | MS.gene054580 | PPI |
| MS.gene053148 | MS.gene78232 | PPI |
| MS.gene78232 | MS.gene034156 | PPI |
| MS.gene78232 | MS.gene034157 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene78232.t1 | MTR_7g059170 | 98.780 | 246 | 3 | 0 | 1 | 246 | 1 | 246 | 0.0 | 498 |
| MS.gene78232.t1 | MTR_4g008160 | 47.234 | 235 | 123 | 1 | 13 | 246 | 9 | 243 | 7.67e-74 | 225 |
| MS.gene78232.t1 | MTR_1g022385 | 46.383 | 235 | 125 | 1 | 13 | 246 | 41 | 275 | 2.04e-72 | 222 |
| MS.gene78232.t1 | MTR_2g038250 | 45.344 | 247 | 131 | 2 | 1 | 246 | 1 | 244 | 8.02e-72 | 220 |
| MS.gene78232.t1 | MTR_3g029930 | 83.784 | 74 | 11 | 1 | 1 | 74 | 1 | 73 | 4.47e-34 | 117 |
| MS.gene78232.t1 | MTR_1g022375 | 39.216 | 102 | 62 | 0 | 135 | 236 | 55 | 156 | 7.55e-20 | 83.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene78232.t1 | AT1G80750 | 51.210 | 248 | 118 | 3 | 1 | 246 | 1 | 247 | 1.44e-78 | 237 |
| MS.gene78232.t1 | AT2G01250 | 48.101 | 237 | 118 | 2 | 13 | 246 | 8 | 242 | 1.07e-73 | 224 |
| MS.gene78232.t1 | AT2G44120 | 47.257 | 237 | 120 | 2 | 13 | 246 | 8 | 242 | 1.26e-73 | 224 |
| MS.gene78232.t1 | AT2G44120 | 47.257 | 237 | 120 | 2 | 13 | 246 | 13 | 247 | 1.47e-73 | 224 |
| MS.gene78232.t1 | AT3G13580 | 46.383 | 235 | 125 | 1 | 13 | 246 | 10 | 244 | 5.89e-73 | 223 |
| MS.gene78232.t1 | AT3G13580 | 46.383 | 235 | 125 | 1 | 13 | 246 | 10 | 244 | 5.89e-73 | 223 |
| MS.gene78232.t1 | AT3G13580 | 46.383 | 235 | 125 | 1 | 13 | 246 | 10 | 244 | 5.89e-73 | 223 |
| MS.gene78232.t1 | AT3G13580 | 46.383 | 235 | 125 | 1 | 13 | 246 | 10 | 244 | 5.89e-73 | 223 |
| MS.gene78232.t1 | AT3G13580 | 46.383 | 235 | 125 | 1 | 13 | 246 | 10 | 244 | 5.89e-73 | 223 |
| MS.gene78232.t1 | AT3G13580 | 46.383 | 235 | 125 | 1 | 13 | 246 | 10 | 244 | 5.89e-73 | 223 |
| MS.gene78232.t1 | AT3G13580 | 46.383 | 235 | 125 | 1 | 13 | 246 | 10 | 244 | 5.89e-73 | 223 |
| MS.gene78232.t1 | AT3G13580 | 46.383 | 235 | 125 | 1 | 13 | 246 | 10 | 244 | 5.89e-73 | 223 |
| MS.gene78232.t1 | AT3G13580 | 46.383 | 235 | 125 | 1 | 13 | 246 | 10 | 244 | 5.89e-73 | 223 |
| MS.gene78232.t1 | AT2G01250 | 43.605 | 172 | 92 | 2 | 13 | 181 | 8 | 177 | 9.04e-39 | 133 |
Find 58 sgRNAs with CRISPR-Local
Find 127 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAAACTGAACAAGTGCTTTC+TGG | 0.154170 | 7.4:-44363198 | None:intergenic |
| CTGAATACGAATGACTATTA+TGG | 0.199323 | 7.4:-44363064 | None:intergenic |
| CTTGTAAATCAGCTCCTTTA+TGG | 0.209662 | 7.4:-44364246 | None:intergenic |
| TACAAGGATGGTGGAGATTC+AGG | 0.234481 | 7.4:+44364586 | MS.gene78232:CDS |
| CATAATAGTCATTCGTATTC+AGG | 0.240399 | 7.4:+44363065 | MS.gene78232:CDS |
| CAGAAAGCACTTGTTCAGTT+TGG | 0.268658 | 7.4:+44363199 | MS.gene78232:CDS |
| ACTATTATGGGCTTGTTCTT+TGG | 0.268791 | 7.4:-44363051 | None:intergenic |
| CCCTTCGTTTCATTCTAATA+AGG | 0.310268 | 7.4:-44362999 | None:intergenic |
| AAGCCAGCAGAGGGATTAAA+AGG | 0.319017 | 7.4:+44364550 | MS.gene78232:CDS |
| GGAATATAGTTGAGATCCTT+TGG | 0.341292 | 7.4:-44362678 | None:intergenic |
| AGAAAGCACTTGTTCAGTTT+GGG | 0.353399 | 7.4:+44363200 | MS.gene78232:CDS |
| TTGTAGGAATTGGGTAAGTT+TGG | 0.369563 | 7.4:+44364433 | MS.gene78232:intron |
| TGCTGGCTTGTTCAGTTCAA+AGG | 0.372394 | 7.4:-44364536 | None:intergenic |
| TGAATACGAATGACTATTAT+GGG | 0.384437 | 7.4:-44363063 | None:intergenic |
| CTCTTCTTCAATATAACCTC+AGG | 0.413339 | 7.4:-44362699 | None:intergenic |
| TGCAAATCTTAAAACCATAA+AGG | 0.425498 | 7.4:+44364232 | MS.gene78232:CDS |
| GTTCAAAGGGCCACATAAAT+CGG | 0.432282 | 7.4:-44364522 | None:intergenic |
| TATGTATTACCTGCTCAATA+AGG | 0.444502 | 7.4:-44364319 | None:intergenic |
| GCTGGCTTGTTCAGTTCAAA+GGG | 0.448912 | 7.4:-44364535 | None:intergenic |
| GTTGAACCATATGTCACCTA+TGG | 0.470090 | 7.4:+44363290 | MS.gene78232:CDS |
| CAATGTTGGTCCACACTTCA+AGG | 0.470139 | 7.4:+44364492 | MS.gene78232:CDS |
| ATAATAGTCATTCGTATTCA+GGG | 0.488242 | 7.4:+44363066 | MS.gene78232:CDS |
| GCTTACCCATAGGTGACATA+TGG | 0.491527 | 7.4:-44363296 | None:intergenic |
| AGTCCTTGCTCTTCCTGAGT+TGG | 0.493159 | 7.4:-44362779 | None:intergenic |
| ACGAAGGGTCAAGTGGAGAC+GGG | 0.493528 | 7.4:+44363014 | MS.gene78232:CDS |
| TTGGCCATCACTCCATCAGT+TGG | 0.498511 | 7.4:-44363257 | None:intergenic |
| GTCTTTGTGAAGCCAACTGA+TGG | 0.503340 | 7.4:+44363245 | MS.gene78232:CDS |
| AGCATGGGCCTTGAGTAAAA+AGG | 0.505209 | 7.4:+44362734 | MS.gene78232:CDS |
| ACAAGGATGGTGGAGATTCA+GGG | 0.513757 | 7.4:+44364587 | MS.gene78232:CDS |
| CTGAGGTTATATTGAAGAAG+AGG | 0.519905 | 7.4:+44362700 | MS.gene78232:CDS |
| AGGAAGTTGTCCGATTTATG+TGG | 0.520802 | 7.4:+44364512 | MS.gene78232:CDS |
| AAAGGAGCTGATTTACAAGA+AGG | 0.528892 | 7.4:+44364250 | MS.gene78232:CDS |
| AACGAAGGGTCAAGTGGAGA+CGG | 0.529927 | 7.4:+44363013 | MS.gene78232:CDS |
| AATCTCCACCATCCTTGTAT+CGG | 0.534716 | 7.4:-44364582 | None:intergenic |
| TGATGGAGTGATGGCCAAGC+TGG | 0.538270 | 7.4:+44363262 | MS.gene78232:CDS |
| AGAGGAAACACAGTGAAGCA+TGG | 0.551237 | 7.4:+44362718 | MS.gene78232:CDS |
| ATAAGGTTATTGTCTGTCAA+AGG | 0.552916 | 7.4:-44364302 | None:intergenic |
| AGACAATAACCTTATTGAGC+AGG | 0.555591 | 7.4:+44364310 | MS.gene78232:CDS |
| GAGGAAACACAGTGAAGCAT+GGG | 0.567999 | 7.4:+44362719 | MS.gene78232:CDS |
| GTGCATCAAATTGACAATGT+TGG | 0.571611 | 7.4:+44364478 | MS.gene78232:CDS |
| CGAAGGGTCAAGTGGAGACG+GGG | 0.582255 | 7.4:+44363015 | MS.gene78232:CDS |
| GAACTGAACAAGCCAGCAGA+GGG | 0.584219 | 7.4:+44364541 | MS.gene78232:CDS |
| TGGTTCAACTCTCGCCAGCT+TGG | 0.586026 | 7.4:-44363276 | None:intergenic |
| TTGAACCATATGTCACCTAT+GGG | 0.596680 | 7.4:+44363291 | MS.gene78232:CDS |
| GAATGAAACGAAGGGTCAAG+TGG | 0.608473 | 7.4:+44363007 | MS.gene78232:CDS |
| GGCTGAAGAAGAACAACCAA+AGG | 0.610086 | 7.4:+44362662 | MS.gene78232:CDS |
| AAGGAGCTGATTTACAAGAA+GGG | 0.610645 | 7.4:+44364251 | MS.gene78232:CDS |
| CGGACAACTTCCTTGAAGTG+TGG | 0.624573 | 7.4:-44364502 | None:intergenic |
| ACCTTATTAGAATGAAACGA+AGG | 0.629621 | 7.4:+44362998 | MS.gene78232:CDS |
| CAAGGATGGTGGAGATTCAG+GGG | 0.643297 | 7.4:+44364588 | MS.gene78232:CDS |
| TGAACTGAACAAGCCAGCAG+AGG | 0.646369 | 7.4:+44364540 | MS.gene78232:CDS |
| TTTCCAACTCAGGAAGAGCA+AGG | 0.646700 | 7.4:+44362776 | MS.gene78232:CDS |
| CCTTATTAGAATGAAACGAA+GGG | 0.647440 | 7.4:+44362999 | MS.gene78232:CDS |
| GAAGCCAACTGATGGAGTGA+TGG | 0.656585 | 7.4:+44363253 | MS.gene78232:CDS |
| TAATAGTCATTCGTATTCAG+GGG | 0.663363 | 7.4:+44363067 | MS.gene78232:CDS |
| GGATCTCAACTATATTCCTG+AGG | 0.677649 | 7.4:+44362683 | MS.gene78232:CDS |
| GCTCGTTGATGAGATCCTCA+CGG | 0.699479 | 7.4:-44364612 | None:intergenic |
| TGGAGATTCAGGGGACCGTG+AGG | 0.708623 | 7.4:+44364597 | MS.gene78232:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATATAACAAAATAAAAGGA+GGG | - | chr7.4:44362871-44362890 | None:intergenic | 15.0% |
| !! | AGTGAATATAACAAAATAAA+AGG | - | chr7.4:44362875-44362894 | None:intergenic | 15.0% |
| !!! | TTTATGAAGTTTTTTTGAAA+AGG | - | chr7.4:44363781-44363800 | None:intergenic | 15.0% |
| !! | AAAACTTCATAAATTGTTTG+TGG | + | chr7.4:44363788-44363807 | MS.gene78232:intron | 20.0% |
| !! | AATTTATGAAGTTAACTTTC+TGG | - | chr7.4:44363755-44363774 | None:intergenic | 20.0% |
| !! | ATTATGAACTTTCATATAGT+TGG | + | chr7.4:44363371-44363390 | MS.gene78232:intron | 20.0% |
| !! | ATTGGAATAAATTTAGTTAC+AGG | - | chr7.4:44363701-44363720 | None:intergenic | 20.0% |
| !! | GAATATAACAAAATAAAAGG+AGG | - | chr7.4:44362872-44362891 | None:intergenic | 20.0% |
| !!! | AAACACTATTTTTAGGTTAA+AGG | + | chr7.4:44363628-44363647 | MS.gene78232:intron | 20.0% |
| !!! | AAACAGATTTTCACAAAATT+AGG | - | chr7.4:44364200-44364219 | None:intergenic | 20.0% |
| !!! | AACACTATTTTTAGGTTAAA+GGG | + | chr7.4:44363629-44363648 | MS.gene78232:intron | 20.0% |
| !!! | TACTGTCTATAAATACTTTT+TGG | + | chr7.4:44363824-44363843 | MS.gene78232:intron | 20.0% |
| !!! | TTGAACTTTCATATAGTTTT+AGG | + | chr7.4:44363440-44363459 | MS.gene78232:intron | 20.0% |
| !!! | TTTTTGGTTTAGAATATTCA+CGG | + | chr7.4:44363840-44363859 | MS.gene78232:intron | 20.0% |
| ! | AAATATGTTATGACTGTACA+CGG | - | chr7.4:44363133-44363152 | None:intergenic | 25.0% |
| ! | ATAATAGTCATTCGTATTCA+GGG | + | chr7.4:44363066-44363085 | MS.gene78232:CDS | 25.0% |
| ! | GACAAAAAATCAAAACATCA+AGG | - | chr7.4:44363111-44363130 | None:intergenic | 25.0% |
| ! | TATTCAAAAATGAAATCCTC+AGG | - | chr7.4:44362816-44362835 | None:intergenic | 25.0% |
| ! | TGAATACGAATGACTATTAT+GGG | - | chr7.4:44363066-44363085 | None:intergenic | 25.0% |
| ! | TGCAAATCTTAAAACCATAA+AGG | + | chr7.4:44364232-44364251 | MS.gene78232:CDS | 25.0% |
| ! | TTGTCAATCGAGAAATATAT+CGG | - | chr7.4:44363610-44363629 | None:intergenic | 25.0% |
| ! | TTGTTGAACTTTCATATAGT+TGG | + | chr7.4:44363404-44363423 | MS.gene78232:intron | 25.0% |
| !! | AACCAGTTTTTCTAATAAAG+TGG | - | chr7.4:44364104-44364123 | None:intergenic | 25.0% |
| !!! | GATTGACAAACACTATTTTT+AGG | + | chr7.4:44363621-44363640 | MS.gene78232:intron | 25.0% |
| ACACTATTTAGTACAGATAG+AGG | + | chr7.4:44363549-44363568 | MS.gene78232:intron | 30.0% | |
| ACCTTATTAGAATGAAACGA+AGG | + | chr7.4:44362998-44363017 | MS.gene78232:CDS | 30.0% | |
| AGAAAAAAAGTTTCCAACTC+AGG | + | chr7.4:44362766-44362785 | MS.gene78232:CDS | 30.0% | |
| ATAAGGTTATTGTCTGTCAA+AGG | - | chr7.4:44364305-44364324 | None:intergenic | 30.0% | |
| CACCACTTTATTAGAAAAAC+TGG | + | chr7.4:44364099-44364118 | MS.gene78232:intron | 30.0% | |
| CATAATAGTCATTCGTATTC+AGG | + | chr7.4:44363065-44363084 | MS.gene78232:CDS | 30.0% | |
| CCTTATTAGAATGAAACGAA+GGG | + | chr7.4:44362999-44363018 | MS.gene78232:CDS | 30.0% | |
| CTCTACTATTAGTACACATA+AGG | - | chr7.4:44363945-44363964 | None:intergenic | 30.0% | |
| CTGAATACGAATGACTATTA+TGG | - | chr7.4:44363067-44363086 | None:intergenic | 30.0% | |
| GAACTTTCATATAGTTGGAA+GGG | + | chr7.4:44363376-44363395 | MS.gene78232:intron | 30.0% | |
| TAATAGTCATTCGTATTCAG+GGG | + | chr7.4:44363067-44363086 | MS.gene78232:CDS | 30.0% | |
| TACAAAAACAATTCAGTGAG+TGG | - | chr7.4:44364395-44364414 | None:intergenic | 30.0% | |
| TATGTAAAGTAGTGCACATA+TGG | + | chr7.4:44364069-44364088 | MS.gene78232:intron | 30.0% | |
| TATGTATTACCTGCTCAATA+AGG | - | chr7.4:44364322-44364341 | None:intergenic | 30.0% | |
| TGAACTTTCATATAGTTGGA+AGG | + | chr7.4:44363375-44363394 | MS.gene78232:intron | 30.0% | |
| TTAGAATATTCACGGAAGAT+TGG | + | chr7.4:44363848-44363867 | MS.gene78232:intron | 30.0% | |
| ! | CATTTTTGAATATCGCAACA+GGG | + | chr7.4:44362824-44362843 | MS.gene78232:CDS | 30.0% |
| !! | CTTTTGCTCTATTTGCTTTT+AGG | + | chr7.4:44363153-44363172 | MS.gene78232:intron | 30.0% |
| !! | TCATTTTTGAATATCGCAAC+AGG | + | chr7.4:44362823-44362842 | MS.gene78232:CDS | 30.0% |
| !!! | TGAGTTGGAAACTTTTTTTC+TGG | - | chr7.4:44362767-44362786 | None:intergenic | 30.0% |
| AAACTTACCCAATTCCTACA+AGG | - | chr7.4:44364434-44364453 | None:intergenic | 35.0% | |
| AATTCCTACAAGGCAAAAAG+TGG | - | chr7.4:44364424-44364443 | None:intergenic | 35.0% | |
| AGACAATAACCTTATTGAGC+AGG | + | chr7.4:44364310-44364329 | MS.gene78232:CDS | 35.0% | |
| AGGATTGAAAAACCGATACA+AGG | + | chr7.4:44364570-44364589 | MS.gene78232:CDS | 35.0% | |
| ATCCTCAGCAAACTGAAATT+TGG | - | chr7.4:44364173-44364192 | None:intergenic | 35.0% | |
| CAAAGGAAAACTAGGAATCT+AGG | - | chr7.4:44364354-44364373 | None:intergenic | 35.0% | |
| CCCTTCGTTTCATTCTAATA+AGG | - | chr7.4:44363002-44363021 | None:intergenic | 35.0% | |
| CTCTTCTTCAATATAACCTC+AGG | - | chr7.4:44362702-44362721 | None:intergenic | 35.0% | |
| CTGAGGTTATATTGAAGAAG+AGG | + | chr7.4:44362700-44362719 | MS.gene78232:CDS | 35.0% | |
| CTTGTAAATCAGCTCCTTTA+TGG | - | chr7.4:44364249-44364268 | None:intergenic | 35.0% | |
| GGAATATAGTTGAGATCCTT+TGG | - | chr7.4:44362681-44362700 | None:intergenic | 35.0% | |
| GTGCATCAAATTGACAATGT+TGG | + | chr7.4:44364478-44364497 | MS.gene78232:CDS | 35.0% | |
| TTAACTTTCTGGACAGAAGA+AGG | - | chr7.4:44363744-44363763 | None:intergenic | 35.0% | |
| TTGAAAAACCGATACAAGGA+TGG | + | chr7.4:44364574-44364593 | MS.gene78232:CDS | 35.0% | |
| TTGAACCATATGTCACCTAT+GGG | + | chr7.4:44363291-44363310 | MS.gene78232:CDS | 35.0% | |
| TTGAGCAGGTAATACATACA+CGG | + | chr7.4:44364324-44364343 | MS.gene78232:intron | 35.0% | |
| TTGTAGGAATTGGGTAAGTT+TGG | + | chr7.4:44364433-44364452 | MS.gene78232:intron | 35.0% | |
| ! | AAAGGAGCTGATTTACAAGA+AGG | + | chr7.4:44364250-44364269 | MS.gene78232:CDS | 35.0% |
| ! | AAGGAGCTGATTTACAAGAA+GGG | + | chr7.4:44364251-44364270 | MS.gene78232:CDS | 35.0% |
| ! | ACTATTATGGGCTTGTTCTT+TGG | - | chr7.4:44363054-44363073 | None:intergenic | 35.0% |
| ! | ACTTTTTGCCTTGTAGGAAT+TGG | + | chr7.4:44364423-44364442 | MS.gene78232:intron | 35.0% |
| ! | CTTTTTGCCTTGTAGGAATT+GGG | + | chr7.4:44364424-44364443 | MS.gene78232:intron | 35.0% |
| !! | AGAAAGCACTTGTTCAGTTT+GGG | + | chr7.4:44363200-44363219 | MS.gene78232:CDS | 35.0% |
| AAAAACCGATACAAGGATGG+TGG | + | chr7.4:44364577-44364596 | MS.gene78232:CDS | 40.0% | |
| AATCTCCACCATCCTTGTAT+CGG | - | chr7.4:44364585-44364604 | None:intergenic | 40.0% | |
| ACTATTGTGCTATAGCGTAG+AGG | + | chr7.4:44363496-44363515 | MS.gene78232:intron | 40.0% | |
| AGGAAGTTGTCCGATTTATG+TGG | + | chr7.4:44364512-44364531 | MS.gene78232:CDS | 40.0% | |
| ATGACTTCTATCACTTGTGC+AGG | + | chr7.4:44362969-44362988 | MS.gene78232:intron | 40.0% | |
| CAAACTGAACAAGTGCTTTC+TGG | - | chr7.4:44363201-44363220 | None:intergenic | 40.0% | |
| CACAGGAAAGTAAAGATGCA+AGG | - | chr7.4:44364136-44364155 | None:intergenic | 40.0% | |
| CAGATGCTTGCAACTATGTT+AGG | + | chr7.4:44363903-44363922 | MS.gene78232:intron | 40.0% | |
| GCTTGCAACTATGTTAGGAA+AGG | + | chr7.4:44363908-44363927 | MS.gene78232:intron | 40.0% | |
| GGACTTCATAAAAAAGCCTG+AGG | + | chr7.4:44362797-44362816 | MS.gene78232:CDS | 40.0% | |
| GGATCTCAACTATATTCCTG+AGG | + | chr7.4:44362683-44362702 | MS.gene78232:CDS | 40.0% | |
| GTTCAAAGGGCCACATAAAT+CGG | - | chr7.4:44364525-44364544 | None:intergenic | 40.0% | |
| GTTGAACCATATGTCACCTA+TGG | + | chr7.4:44363290-44363309 | MS.gene78232:CDS | 40.0% | |
| TCAATCTATCGCTTACCCAT+AGG | - | chr7.4:44363309-44363328 | None:intergenic | 40.0% | |
| TGGCGATAATGCATATACAC+AGG | - | chr7.4:44364153-44364172 | None:intergenic | 40.0% | |
| TTCAAATTTCGCTACCCACA+CGG | - | chr7.4:44363583-44363602 | None:intergenic | 40.0% | |
| ! | AATCCTTTTAATCCCTCTGC+TGG | - | chr7.4:44364556-44364575 | None:intergenic | 40.0% |
| ! | GATTGGTTACTTGGAGATCA+AGG | + | chr7.4:44363865-44363884 | MS.gene78232:intron | 40.0% |
| ! | TTCACGGAAGATTGGTTACT+TGG | + | chr7.4:44363856-44363875 | MS.gene78232:intron | 40.0% |
| !! | CAGAAAGCACTTGTTCAGTT+TGG | + | chr7.4:44363199-44363218 | MS.gene78232:CDS | 40.0% |
| !!! | TGTTCCACTTTTTGCCTTGT+AGG | + | chr7.4:44364417-44364436 | MS.gene78232:intron | 40.0% |
| AAGCCAGCAGAGGGATTAAA+AGG | + | chr7.4:44364550-44364569 | MS.gene78232:CDS | 45.0% | |
| AGAGGAAACACAGTGAAGCA+TGG | + | chr7.4:44362718-44362737 | MS.gene78232:CDS | 45.0% | |
| AGCATGGGCCTTGAGTAAAA+AGG | + | chr7.4:44362734-44362753 | MS.gene78232:CDS | 45.0% | |
| CAATGTTGGTCCACACTTCA+AGG | + | chr7.4:44364492-44364511 | MS.gene78232:CDS | 45.0% | |
| CAATTCAGTGAGTGGGTCAA+AGG | - | chr7.4:44364371-44364390 | None:intergenic | 45.0% | |
| GAATGAAACGAAGGGTCAAG+TGG | + | chr7.4:44363007-44363026 | MS.gene78232:CDS | 45.0% | |
| GAGGAAACACAGTGAAGCAT+GGG | + | chr7.4:44362719-44362738 | MS.gene78232:CDS | 45.0% | |
| GAGTGGACAATTCAGTGAGT+GGG | - | chr7.4:44364378-44364397 | None:intergenic | 45.0% | |
| GAGTGGGTCAAAGGAAAACT+AGG | - | chr7.4:44364362-44364381 | None:intergenic | 45.0% | |
| GCATCATGTGTGACATGCAT+AGG | - | chr7.4:44363972-44363991 | None:intergenic | 45.0% | |
| GCTTACCCATAGGTGACATA+TGG | - | chr7.4:44363299-44363318 | None:intergenic | 45.0% | |
| GGACAGAAGAAGGATATGAG+AGG | - | chr7.4:44363734-44363753 | None:intergenic | 45.0% | |
| GGCTGAAGAAGAACAACCAA+AGG | + | chr7.4:44362662-44362681 | MS.gene78232:CDS | 45.0% | |
| GTCTTTGTGAAGCCAACTGA+TGG | + | chr7.4:44363245-44363264 | MS.gene78232:CDS | 45.0% | |
| TGAGTGGACAATTCAGTGAG+TGG | - | chr7.4:44364379-44364398 | None:intergenic | 45.0% | |
| TTTCCAACTCAGGAAGAGCA+AGG | + | chr7.4:44362776-44362795 | MS.gene78232:CDS | 45.0% | |
| ! | ATGAGAGGCAGCTAGTCTAT+TGG | - | chr7.4:44363719-44363738 | None:intergenic | 45.0% |
| ! | GAGTTGCGCCTTTTTACTCA+AGG | - | chr7.4:44362745-44362764 | None:intergenic | 45.0% |
| !! | ACAAGGATGGTGGAGATTCA+GGG | + | chr7.4:44364587-44364606 | MS.gene78232:CDS | 45.0% |
| !! | CGCCAAATTTCAGTTTGCTG+AGG | + | chr7.4:44364168-44364187 | MS.gene78232:intron | 45.0% |
| !! | GCTGGCTTGTTCAGTTCAAA+GGG | - | chr7.4:44364538-44364557 | None:intergenic | 45.0% |
| !! | TACAAGGATGGTGGAGATTC+AGG | + | chr7.4:44364586-44364605 | MS.gene78232:CDS | 45.0% |
| !! | TGCTGGCTTGTTCAGTTCAA+AGG | - | chr7.4:44364539-44364558 | None:intergenic | 45.0% |
| AACGAAGGGTCAAGTGGAGA+CGG | + | chr7.4:44363013-44363032 | MS.gene78232:CDS | 50.0% | |
| AGTCCTTGCTCTTCCTGAGT+TGG | - | chr7.4:44362782-44362801 | None:intergenic | 50.0% | |
| CGGACAACTTCCTTGAAGTG+TGG | - | chr7.4:44364505-44364524 | None:intergenic | 50.0% | |
| GAACTGAACAAGCCAGCAGA+GGG | + | chr7.4:44364541-44364560 | MS.gene78232:CDS | 50.0% | |
| GAAGCCAACTGATGGAGTGA+TGG | + | chr7.4:44363253-44363272 | MS.gene78232:CDS | 50.0% | |
| TGAACTGAACAAGCCAGCAG+AGG | + | chr7.4:44364540-44364559 | MS.gene78232:CDS | 50.0% | |
| TTGGCCATCACTCCATCAGT+TGG | - | chr7.4:44363260-44363279 | None:intergenic | 50.0% | |
| ! | GCTCGTTGATGAGATCCTCA+CGG | - | chr7.4:44364615-44364634 | None:intergenic | 50.0% |
| !! | ATAGAGGCACTATAGCCGTG+TGG | + | chr7.4:44363565-44363584 | MS.gene78232:intron | 50.0% |
| !! | CAAGGATGGTGGAGATTCAG+GGG | + | chr7.4:44364588-44364607 | MS.gene78232:CDS | 50.0% |
| !! | TAGAGGCACTATAGCCGTGT+GGG | + | chr7.4:44363566-44363585 | MS.gene78232:intron | 50.0% |
| ACGAAGGGTCAAGTGGAGAC+GGG | + | chr7.4:44363014-44363033 | MS.gene78232:CDS | 55.0% | |
| TGATGGAGTGATGGCCAAGC+TGG | + | chr7.4:44363262-44363281 | MS.gene78232:CDS | 55.0% | |
| TGGTTCAACTCTCGCCAGCT+TGG | - | chr7.4:44363279-44363298 | None:intergenic | 55.0% | |
| CGAAGGGTCAAGTGGAGACG+GGG | + | chr7.4:44363015-44363034 | MS.gene78232:CDS | 60.0% | |
| TGGAGATTCAGGGGACCGTG+AGG | + | chr7.4:44364597-44364616 | MS.gene78232:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.4 | gene | 44362660 | 44364654 | 44362660 | ID=MS.gene78232 |
| chr7.4 | mRNA | 44362660 | 44364654 | 44362660 | ID=MS.gene78232.t1;Parent=MS.gene78232 |
| chr7.4 | exon | 44362660 | 44362845 | 44362660 | ID=MS.gene78232.t1.exon1;Parent=MS.gene78232.t1 |
| chr7.4 | CDS | 44362660 | 44362845 | 44362660 | ID=cds.MS.gene78232.t1;Parent=MS.gene78232.t1 |
| chr7.4 | exon | 44362991 | 44363088 | 44362991 | ID=MS.gene78232.t1.exon2;Parent=MS.gene78232.t1 |
| chr7.4 | CDS | 44362991 | 44363088 | 44362991 | ID=cds.MS.gene78232.t1;Parent=MS.gene78232.t1 |
| chr7.4 | exon | 44363175 | 44363312 | 44363175 | ID=MS.gene78232.t1.exon3;Parent=MS.gene78232.t1 |
| chr7.4 | CDS | 44363175 | 44363312 | 44363175 | ID=cds.MS.gene78232.t1;Parent=MS.gene78232.t1 |
| chr7.4 | exon | 44364229 | 44364331 | 44364229 | ID=MS.gene78232.t1.exon4;Parent=MS.gene78232.t1 |
| chr7.4 | CDS | 44364229 | 44364331 | 44364229 | ID=cds.MS.gene78232.t1;Parent=MS.gene78232.t1 |
| chr7.4 | exon | 44364439 | 44364654 | 44364439 | ID=MS.gene78232.t1.exon5;Parent=MS.gene78232.t1 |
| chr7.4 | CDS | 44364439 | 44364654 | 44364439 | ID=cds.MS.gene78232.t1;Parent=MS.gene78232.t1 |
| Gene Sequence |
| Protein sequence |
