AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene034877

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene034877.t1 MTR_1g060120 98.238 227 3 1 1 226 1 227 9.29e-165 454
MS.gene034877.t1 MTR_1g112200 55.665 203 80 1 20 222 17 209 5.66e-80 238
MS.gene034877.t1 MTR_1g085500 38.182 220 126 5 8 224 6 218 5.82e-49 160
MS.gene034877.t1 MTR_2g030855 41.872 203 104 4 23 220 19 212 1.51e-45 151
MS.gene034877.t1 MTR_6g005330 40.271 221 120 6 5 220 2 215 2.86e-45 150
MS.gene034877.t1 MTR_1g023770 40.359 223 109 6 6 220 3 209 2.23e-44 148
MS.gene034877.t1 MTR_6g005360 39.545 220 123 5 5 220 2 215 7.89e-44 147
MS.gene034877.t1 MTR_2g031270 41.837 196 100 4 30 220 27 213 9.76e-44 146
MS.gene034877.t1 MTR_5g036570 40.000 200 110 4 25 220 26 219 2.19e-43 145
MS.gene034877.t1 MTR_1g085140 38.350 206 118 4 22 224 20 219 4.41e-43 145
MS.gene034877.t1 MTR_6g005310 40.476 210 114 5 16 220 12 215 5.28e-43 144
MS.gene034877.t1 MTR_4g017040 39.189 222 120 6 5 219 2 215 8.36e-43 144
MS.gene034877.t1 MTR_6g005340 41.232 211 111 6 16 220 12 215 8.39e-43 144
MS.gene034877.t1 MTR_7g111240 39.109 202 114 4 25 223 19 214 2.18e-42 143
MS.gene034877.t1 MTR_1g079490 37.838 222 121 5 11 220 1 217 2.37e-42 143
MS.gene034877.t1 MTR_7g111240 38.614 202 112 4 25 223 19 211 2.80e-42 142
MS.gene034877.t1 MTR_5g046410 37.838 222 123 6 5 219 2 215 2.61e-41 140
MS.gene034877.t1 MTR_5g046430 37.838 222 123 6 5 219 2 215 2.61e-41 140
MS.gene034877.t1 MTR_4g017030 37.838 222 123 6 5 219 2 215 2.61e-41 140
MS.gene034877.t1 MTR_4g017050 37.838 222 123 6 5 219 2 215 2.66e-41 140
MS.gene034877.t1 MTR_2g019250 38.288 222 122 6 5 219 2 215 2.97e-41 140
MS.gene034877.t1 MTR_2g041550 39.583 192 109 2 30 220 21 206 1.12e-38 133
MS.gene034877.t1 MTR_8g007300 38.119 202 119 3 14 213 14 211 1.40e-38 133
MS.gene034877.t1 MTR_8g020610 36.453 203 116 5 18 217 8 200 6.04e-38 131
MS.gene034877.t1 MTR_8g020590 41.477 176 96 3 30 204 19 188 8.12e-38 131
MS.gene034877.t1 MTR_2g041570 37.563 197 113 4 7 202 1 188 4.08e-37 129
MS.gene034877.t1 MTR_2g041580 37.563 197 113 4 7 202 1 188 4.21e-37 129
MS.gene034877.t1 MTR_6g005350 36.073 219 131 5 5 220 2 214 9.18e-37 129
MS.gene034877.t1 MTR_2g030895 41.860 172 94 4 55 220 7 178 2.35e-36 126
MS.gene034877.t1 MTR_2g030865 41.279 172 95 4 55 220 7 178 8.32e-35 122
MS.gene034877.t1 MTR_3g096330 38.919 185 108 2 1 185 553 732 1.03e-34 130
MS.gene034877.t1 MTR_2g086620 34.091 220 120 4 2 218 5 202 1.66e-33 120
MS.gene034877.t1 MTR_2g045100 34.731 167 108 1 54 220 40 205 4.10e-33 119
MS.gene034877.t1 MTR_3g019650 31.308 214 135 5 7 220 3 204 1.09e-32 117
MS.gene034877.t1 MTR_8g020630 32.020 203 131 3 18 220 10 205 1.72e-32 117
MS.gene034877.t1 MTR_2g086640 34.101 217 118 4 5 218 7 201 2.21e-32 117
MS.gene034877.t1 MTR_0284s0010 33.000 200 127 3 18 217 10 202 2.87e-32 117
MS.gene034877.t1 MTR_2g086630 33.182 220 122 4 2 218 5 202 2.93e-32 116
MS.gene034877.t1 MTR_8g020750 35.961 203 119 5 18 217 11 205 2.94e-32 117
MS.gene034877.t1 MTR_3g019710 32.984 191 121 3 30 220 22 205 4.22e-32 116
MS.gene034877.t1 MTR_6g005380 37.264 212 120 6 5 210 2 206 5.97e-32 116
MS.gene034877.t1 MTR_4g010340 31.343 201 130 3 21 221 10 202 1.53e-31 114
MS.gene034877.t1 MTR_3g019680 32.461 191 122 3 30 220 21 204 2.45e-31 114
MS.gene034877.t1 MTR_2g036120 32.461 191 122 3 30 220 22 205 7.98e-31 113
MS.gene034877.t1 MTR_8g020650 33.508 191 120 3 30 220 22 205 1.65e-30 112
MS.gene034877.t1 MTR_7g011340 33.511 188 118 3 30 217 22 202 3.03e-30 111
MS.gene034877.t1 MTR_8g020670 31.754 211 133 4 10 220 6 205 3.10e-30 111
MS.gene034877.t1 MTR_8g020763 33.333 171 112 2 54 223 20 189 4.03e-30 110
MS.gene034877.t1 MTR_5g031460 31.383 188 122 3 30 217 22 202 4.59e-30 111
MS.gene034877.t1 MTR_4g052770 33.023 215 120 4 7 218 10 203 5.96e-30 110
MS.gene034877.t1 MTR_2g031300 41.509 159 68 4 55 208 7 145 7.73e-30 108
MS.gene034877.t1 MTR_4g052780 32.057 209 120 3 13 218 14 203 4.37e-29 108
MS.gene034877.t1 MTR_8g020770 31.776 214 135 4 10 221 3 207 5.08e-28 105
MS.gene034877.t1 MTR_3g073170 32.461 191 120 4 31 221 26 207 6.25e-28 105
MS.gene034877.t1 MTR_8g020760 30.556 216 136 5 7 220 4 207 9.28e-28 105
MS.gene034877.t1 MTR_2g044040 28.837 215 139 4 6 220 5 205 2.67e-27 103
MS.gene034877.t1 MTR_2g019780 32.812 192 116 4 31 220 28 208 1.36e-25 99.8
MS.gene034877.t1 MTR_3g019810 27.700 213 132 7 9 220 114 305 1.37e-18 82.8
MS.gene034877.t1 MTR_4g027415 35.938 128 75 3 30 157 22 142 1.08e-17 77.0
MS.gene034877.t1 MTR_3g019610 32.456 114 64 3 6 119 5 105 7.12e-12 60.5
MS.gene034877.t1 MTR_2g072560 35.000 100 59 2 30 129 22 115 4.50e-11 59.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene034877.t1 AT3G10080 68.159 201 63 1 22 222 22 221 2.34e-106 306
MS.gene034877.t1 AT3G10080 68.159 201 63 1 22 222 93 292 2.41e-105 306
MS.gene034877.t1 AT1G02335 39.171 217 121 4 13 224 9 219 1.17e-49 162
MS.gene034877.t1 AT3G04200 41.553 219 107 6 9 213 4 215 4.39e-48 158
MS.gene034877.t1 AT1G18980 42.466 219 111 6 5 220 12 218 7.91e-48 157
MS.gene034877.t1 AT1G18970 40.183 219 116 6 5 220 12 218 3.09e-47 155
MS.gene034877.t1 AT3G62020 40.187 214 116 6 16 224 13 219 3.68e-46 152
MS.gene034877.t1 AT1G09560 38.647 207 118 4 21 224 19 219 2.67e-44 148
MS.gene034877.t1 AT5G26700 36.735 196 116 3 30 224 25 213 1.00e-43 146
MS.gene034877.t1 AT5G38940 40.796 201 110 4 25 220 25 221 1.68e-43 146
MS.gene034877.t1 AT5G38940 40.796 201 110 4 25 220 49 245 2.98e-43 146
MS.gene034877.t1 AT3G04170 38.565 223 119 5 14 225 8 223 3.71e-43 145
MS.gene034877.t1 AT5G39190 38.889 216 120 5 11 220 10 219 6.73e-43 144
MS.gene034877.t1 AT5G39160 38.889 216 120 5 11 220 10 219 8.81e-43 144
MS.gene034877.t1 AT5G39130 38.426 216 121 5 11 220 10 219 9.00e-43 144
MS.gene034877.t1 AT3G05950 39.614 207 114 4 26 226 26 227 1.13e-42 144
MS.gene034877.t1 AT5G38960 41.463 205 110 4 22 220 22 222 1.64e-42 143
MS.gene034877.t1 AT5G38910 39.631 217 119 6 10 220 9 219 3.50e-42 142
MS.gene034877.t1 AT4G14630 38.496 226 126 6 3 220 2 222 5.06e-42 142
MS.gene034877.t1 AT3G05930 38.140 215 122 5 14 224 12 219 8.06e-42 141
MS.gene034877.t1 AT5G20630 39.062 192 110 2 30 220 22 207 9.50e-42 141
MS.gene034877.t1 AT5G38930 39.706 204 114 4 22 220 22 221 1.17e-41 141
MS.gene034877.t1 AT5G39160 39.352 216 115 6 11 220 10 215 2.16e-41 140
MS.gene034877.t1 AT5G61750 41.398 186 97 5 21 203 14 190 1.07e-40 138
MS.gene034877.t1 AT3G04150 41.206 199 106 4 26 218 26 219 3.26e-40 138
MS.gene034877.t1 AT3G62020 41.714 175 96 4 55 224 17 190 3.33e-40 136
MS.gene034877.t1 AT5G39110 37.387 222 120 6 14 220 3 220 3.72e-40 137
MS.gene034877.t1 AT3G04150 37.555 229 123 5 10 218 4 232 6.57e-40 137
MS.gene034877.t1 AT1G72610 39.062 192 110 2 30 220 19 204 6.49e-39 134
MS.gene034877.t1 AT3G04180 37.879 198 112 4 26 217 26 218 1.89e-38 133
MS.gene034877.t1 AT5G39120 37.321 209 121 4 18 220 15 219 2.54e-38 132
MS.gene034877.t1 AT5G39150 37.915 211 117 5 18 220 15 219 2.80e-38 132
MS.gene034877.t1 AT5G39180 37.915 211 117 5 18 220 15 219 4.85e-38 132
MS.gene034877.t1 AT3G04190 38.660 194 108 4 26 213 26 214 6.58e-38 132
MS.gene034877.t1 AT5G39190 35.185 216 106 5 11 220 10 197 2.06e-34 122
MS.gene034877.t1 AT5G39160 35.185 216 106 5 11 220 10 197 2.93e-34 121
MS.gene034877.t1 AT1G10460 34.146 205 125 5 23 221 16 216 3.91e-34 122
MS.gene034877.t1 AT1G74820 35.586 222 122 7 11 219 11 224 6.59e-31 114
MS.gene034877.t1 AT5G38910 33.023 215 99 6 10 220 9 182 4.53e-24 95.1

Find 49 sgRNAs with CRISPR-Local

Find 60 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCTTCTGCTGTGTTTGGTTC+AGG 0.218464 1.4:+49140430 MS.gene034877:CDS
CTAATCTACCTTTCTTGTTT+AGG 0.257806 1.4:-49140529 None:intergenic
ATTTGTTGATTCTAACAATA+AGG 0.272659 1.4:+49140270 MS.gene034877:CDS
GCAAGAACAGATATTGAAAT+TGG 0.290715 1.4:+49140172 MS.gene034877:CDS
GGAAAATTTGCAGGGTTTGC+AGG 0.296484 1.4:-49140121 None:intergenic
TCTTCTGCACTCCAGGATTC+TGG 0.310068 1.4:-49140405 None:intergenic
GATGAAGTTGTTACTTTGTT+TGG 0.346407 1.4:+49140370 MS.gene034877:CDS
AAGATACCTTCTGCTGTGTT+TGG 0.348538 1.4:+49140424 MS.gene034877:CDS
CAGAAGTCTTGGACTGGATC+AGG 0.360758 1.4:-49139944 None:intergenic
GATTCAAGGAAAAGTGTATT+CGG 0.369070 1.4:+49140246 MS.gene034877:CDS
CTTCTGCTGTGTTTGGTTCA+GGG 0.370663 1.4:+49140431 MS.gene034877:CDS
ATGGAAGCTAATATTGGGTT+TGG 0.377081 1.4:-49139971 None:intergenic
TCAGGAAACTTCTCAGAAAC+AGG 0.378732 1.4:+49140085 MS.gene034877:CDS
TTGAGACCTGGAAAATTTGC+AGG 0.399479 1.4:-49140130 None:intergenic
TGTCTACACAAAAGAACCTT+TGG 0.410688 1.4:+49139867 MS.gene034877:CDS
ATTCAAGGAAAAGTGTATTC+GGG 0.423411 1.4:+49140247 MS.gene034877:CDS
GGATTGAGTTCTAAACAGAT+TGG 0.444234 1.4:+49140484 MS.gene034877:CDS
TGTATTAGTTCAGTGGCTCT+TGG 0.445377 1.4:-49140220 None:intergenic
ACTTGAACAAGGTGAGGTTA+TGG 0.446223 1.4:+49140306 MS.gene034877:CDS
GAACTAATACATGTGATTCA+AGG 0.461345 1.4:+49140232 MS.gene034877:CDS
GAAGGTATCTTCTGCACTCC+AGG 0.463615 1.4:-49140412 None:intergenic
TTCTCCAACATGAAAACATC+AGG 0.464520 1.4:+49140067 MS.gene034877:CDS
GGTTTGGTATGCAGAAGTCT+TGG 0.489442 1.4:-49139955 None:intergenic
GTTGGAGAAGATAAAGTCAT+TGG 0.494642 1.4:-49140053 None:intergenic
ATAAAATGAACAAGTCCTCT+AGG 0.516601 1.4:-49140334 None:intergenic
ATCCCTAGTGTGTTGAGACC+TGG 0.521742 1.4:-49140142 None:intergenic
AGAACAGATATTGAAATTGG+AGG 0.530145 1.4:+49140175 MS.gene034877:CDS
TTTCCAGGTCTCAACACACT+AGG 0.535831 1.4:+49140139 MS.gene034877:CDS
TGTGATGATGGCTAGGTTGA+GGG 0.537524 1.4:-49139909 None:intergenic
AATTAGATCCTAAACAAGAA+AGG 0.545557 1.4:+49140521 MS.gene034877:CDS
GTCTGAGGCTAATGTGATGA+TGG 0.546476 1.4:-49139921 None:intergenic
AATCACATGTATTAGTTCAG+TGG 0.548042 1.4:-49140227 None:intergenic
AGGCTAATGTGATGATGGCT+AGG 0.566181 1.4:-49139916 None:intergenic
GGTATGCAGAAGTCTTGGAC+TGG 0.567898 1.4:-49139950 None:intergenic
AGAAGTCTTGGACTGGATCA+GGG 0.575199 1.4:-49139943 None:intergenic
TTCCAGGTCTCAACACACTA+GGG 0.576341 1.4:+49140140 MS.gene034877:CDS
GCATGGGAGAATGGTGTGAA+AGG 0.587406 1.4:-49140008 None:intergenic
ATGTGATGATGGCTAGGTTG+AGG 0.590660 1.4:-49139910 None:intergenic
TTGGACTGGATCAGGGTCTG+AGG 0.592207 1.4:-49139936 None:intergenic
AAATAGAGAGCAAAAGCCAA+AGG 0.599549 1.4:-49139883 None:intergenic
CCTGAACCAAACACAGCAGA+AGG 0.603153 1.4:-49140430 None:intergenic
TAGAATACTTGAACAAGGTG+AGG 0.623266 1.4:+49140300 MS.gene034877:CDS
TGAGACCTGGAAAATTTGCA+GGG 0.626115 1.4:-49140129 None:intergenic
GTTTGGTTCAGGGATTGATG+AGG 0.628382 1.4:+49140441 MS.gene034877:CDS
GAGGTTATGGTGTTTCCTAG+AGG 0.631010 1.4:+49140319 MS.gene034877:CDS
TTTGCTAGAATACTTGAACA+AGG 0.648470 1.4:+49140295 MS.gene034877:CDS
GTGGCTCTTGGATGAAAATG+TGG 0.649171 1.4:-49140208 None:intergenic
GTCATTGGTGATGACTTCTG+AGG 0.664085 1.4:-49140038 None:intergenic
GCTCTTGGATGAAAATGTGG+TGG 0.675073 1.4:-49140205 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTTGTTGATTCTAACAATA+AGG + chr1.4:49140270-49140289 MS.gene034877:CDS 20.0%
!!! TTTTAATGGAAGCTAATATT+GGG - chr1.4:49139979-49139998 None:intergenic 20.0%
! AATTAGATCCTAAACAAGAA+AGG + chr1.4:49140521-49140540 MS.gene034877:CDS 25.0%
!! AGGATCTAATTTTCTTTTCA+TGG - chr1.4:49140512-49140531 None:intergenic 25.0%
!! GTTCATTTTATGATGAATGT+TGG + chr1.4:49140346-49140365 MS.gene034877:CDS 25.0%
!!! GTTTTAATGGAAGCTAATAT+TGG - chr1.4:49139980-49139999 None:intergenic 25.0%
AATCACATGTATTAGTTCAG+TGG - chr1.4:49140230-49140249 None:intergenic 30.0%
AGAACAGATATTGAAATTGG+AGG + chr1.4:49140175-49140194 MS.gene034877:CDS 30.0%
ATAAAATGAACAAGTCCTCT+AGG - chr1.4:49140337-49140356 None:intergenic 30.0%
GAACTAATACATGTGATTCA+AGG + chr1.4:49140232-49140251 MS.gene034877:CDS 30.0%
GCAAGAACAGATATTGAAAT+TGG + chr1.4:49140172-49140191 MS.gene034877:CDS 30.0%
TTTGCTAGAATACTTGAACA+AGG + chr1.4:49140295-49140314 MS.gene034877:CDS 30.0%
! ATTCAAGGAAAAGTGTATTC+GGG + chr1.4:49140247-49140266 MS.gene034877:CDS 30.0%
! GAGCTTTTACAAAAAGCTTT+TGG + chr1.4:49140463-49140482 MS.gene034877:CDS 30.0%
! GATTCAAGGAAAAGTGTATT+CGG + chr1.4:49140246-49140265 MS.gene034877:CDS 30.0%
!! AAAGGTGTGATGTGTTTTAA+TGG - chr1.4:49139993-49140012 None:intergenic 30.0%
!! GATGAAGTTGTTACTTTGTT+TGG + chr1.4:49140370-49140389 MS.gene034877:CDS 30.0%
AAATAGAGAGCAAAAGCCAA+AGG - chr1.4:49139886-49139905 None:intergenic 35.0%
ATGGAAGCTAATATTGGGTT+TGG - chr1.4:49139974-49139993 None:intergenic 35.0%
GTTGGAGAAGATAAAGTCAT+TGG - chr1.4:49140056-49140075 None:intergenic 35.0%
TAGAATACTTGAACAAGGTG+AGG + chr1.4:49140300-49140319 MS.gene034877:CDS 35.0%
TGTCTACACAAAAGAACCTT+TGG + chr1.4:49139867-49139886 MS.gene034877:CDS 35.0%
TTCTCCAACATGAAAACATC+AGG + chr1.4:49140067-49140086 MS.gene034877:CDS 35.0%
! GTTTCCTGATGTTTTCATGT+TGG - chr1.4:49140074-49140093 None:intergenic 35.0%
!! AGTTTTAATAGCCAGAATCC+TGG + chr1.4:49140394-49140413 MS.gene034877:CDS 35.0%
!! GGATTGAGTTCTAAACAGAT+TGG + chr1.4:49140484-49140503 MS.gene034877:CDS 35.0%
AAGATACCTTCTGCTGTGTT+TGG + chr1.4:49140424-49140443 MS.gene034877:CDS 40.0%
ACTTGAACAAGGTGAGGTTA+TGG + chr1.4:49140306-49140325 MS.gene034877:CDS 40.0%
TCAGGAAACTTCTCAGAAAC+AGG + chr1.4:49140085-49140104 MS.gene034877:CDS 40.0%
TGAGACCTGGAAAATTTGCA+GGG - chr1.4:49140132-49140151 None:intergenic 40.0%
TGTATTAGTTCAGTGGCTCT+TGG - chr1.4:49140223-49140242 None:intergenic 40.0%
TTGAGACCTGGAAAATTTGC+AGG - chr1.4:49140133-49140152 None:intergenic 40.0%
!! ACTTCTGAGGAGTTTTTGCA+TGG - chr1.4:49140028-49140047 None:intergenic 40.0%
!! CTTCTGAGGAGTTTTTGCAT+GGG - chr1.4:49140027-49140046 None:intergenic 40.0%
GAGGTTATGGTGTTTCCTAG+AGG + chr1.4:49140319-49140338 MS.gene034877:CDS 45.0%
GCTCTTGGATGAAAATGTGG+TGG - chr1.4:49140208-49140227 None:intergenic 45.0%
GGAAAATTTGCAGGGTTTGC+AGG - chr1.4:49140124-49140143 None:intergenic 45.0%
GTGGCTCTTGGATGAAAATG+TGG - chr1.4:49140211-49140230 None:intergenic 45.0%
TTCCAGGTCTCAACACACTA+GGG + chr1.4:49140140-49140159 MS.gene034877:CDS 45.0%
TTTCCAGGTCTCAACACACT+AGG + chr1.4:49140139-49140158 MS.gene034877:CDS 45.0%
! AGAAGTCTTGGACTGGATCA+GGG - chr1.4:49139946-49139965 None:intergenic 45.0%
! CTTCTGCTGTGTTTGGTTCA+GGG + chr1.4:49140431-49140450 MS.gene034877:CDS 45.0%
! GCAAACCCTGCAAATTTTCC+AGG + chr1.4:49140124-49140143 MS.gene034877:CDS 45.0%
! GGAGTTTTTGCATGGGAGAA+TGG - chr1.4:49140020-49140039 None:intergenic 45.0%
! GGTTTGGTATGCAGAAGTCT+TGG - chr1.4:49139958-49139977 None:intergenic 45.0%
! GTCTGAGGCTAATGTGATGA+TGG - chr1.4:49139924-49139943 None:intergenic 45.0%
! GTTTGGTTCAGGGATTGATG+AGG + chr1.4:49140441-49140460 MS.gene034877:CDS 45.0%
!! AGGCTAATGTGATGATGGCT+AGG - chr1.4:49139919-49139938 None:intergenic 45.0%
!! ATGTGATGATGGCTAGGTTG+AGG - chr1.4:49139913-49139932 None:intergenic 45.0%
!! GTCATTGGTGATGACTTCTG+AGG - chr1.4:49140041-49140060 None:intergenic 45.0%
!! TGTGATGATGGCTAGGTTGA+GGG - chr1.4:49139912-49139931 None:intergenic 45.0%
ATCCCTAGTGTGTTGAGACC+TGG - chr1.4:49140145-49140164 None:intergenic 50.0%
CCTGAACCAAACACAGCAGA+AGG - chr1.4:49140433-49140452 None:intergenic 50.0%
GCATGGGAGAATGGTGTGAA+AGG - chr1.4:49140011-49140030 None:intergenic 50.0%
GGTATGCAGAAGTCTTGGAC+TGG - chr1.4:49139953-49139972 None:intergenic 50.0%
TCTTCTGCACTCCAGGATTC+TGG - chr1.4:49140408-49140427 None:intergenic 50.0%
! CAGAAGTCTTGGACTGGATC+AGG - chr1.4:49139947-49139966 None:intergenic 50.0%
! CCTTCTGCTGTGTTTGGTTC+AGG + chr1.4:49140430-49140449 MS.gene034877:CDS 50.0%
!! GAAGGTATCTTCTGCACTCC+AGG - chr1.4:49140415-49140434 None:intergenic 50.0%
! TTGGACTGGATCAGGGTCTG+AGG - chr1.4:49139939-49139958 None:intergenic 55.0%


Chromosome Type Strat End Strand Name
chr1.4 gene 49139866 49140546 49139866 ID=MS.gene034877
chr1.4 mRNA 49139866 49140546 49139866 ID=MS.gene034877.t1;Parent=MS.gene034877
chr1.4 exon 49139866 49140546 49139866 ID=MS.gene034877.t1.exon1;Parent=MS.gene034877.t1
chr1.4 CDS 49139866 49140546 49139866 ID=cds.MS.gene034877.t1;Parent=MS.gene034877.t1
Gene Sequence

>MS.gene034877

ATGTCTACACAAAAGAACCTTTGGCTTTTGCTCTCTATTTTCTCCCTCAACCTAGCCATCATCACATTAGCCTCAGACCCTGATCCAGTCCAAGACTTCTGCATACCAAACCCAATATTAGCTTCCATTAAAACACATCACACCTTTCACACCATTCTCCCATGCAAAAACTCCTCAGAAGTCATCACCAATGACTTTATCTTCTCCAACATGAAAACATCAGGAAACTTCTCAGAAACAGGTTTAGCAGTAATACCTGCAAACCCTGCAAATTTTCCAGGTCTCAACACACTAGGGATGTCGTTTGCAAGAACAGATATTGAAATTGGAGGAATCAATCCACCACATTTTCATCCAAGAGCCACTGAACTAATACATGTGATTCAAGGAAAAGTGTATTCGGGATTTGTTGATTCTAACAATAAGGTTTTTGCTAGAATACTTGAACAAGGTGAGGTTATGGTGTTTCCTAGAGGACTTGTTCATTTTATGATGAATGTTGGTGATGAAGTTGTTACTTTGTTTGGTAGTTTTAATAGCCAGAATCCTGGAGTGCAGAAGATACCTTCTGCTGTGTTTGGTTCAGGGATTGATGAGGAGCTTTTACAAAAAGCTTTTGGATTGAGTTCTAAACAGATTGGAACCATGAAAAGAAAATTAGATCCTAAACAAGAAAGGTAG
Protein sequence

>MS.gene034877.t1

MSTQKNLWLLLSIFSLNLAIITLASDPDPVQDFCIPNPILASIKTHHTFHTILPCKNSSEVITNDFIFSNMKTSGNFSETGLAVIPANPANFPGLNTLGMSFARTDIEIGGINPPHFHPRATELIHVIQGKVYSGFVDSNNKVFARILEQGEVMVFPRGLVHFMMNVGDEVVTLFGSFNSQNPGVQKIPSAVFGSGIDEELLQKAFGLSSKQIGTMKRKLDPKQER