Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene89774.t1 | XP_003604729.1 | 97.7 | 222 | 4 | 1 | 1 | 222 | 1 | 221 | 7.30E-117 | 429.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene89774.t1 | Q9SFF9 | 65.2 | 224 | 69 | 5 | 6 | 222 | 7 | 228 | 1.6e-72 | 273.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene89774.t1 | G7JQ50 | 97.7 | 222 | 4 | 1 | 1 | 222 | 1 | 221 | 5.3e-117 | 429.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene04932 | MS.gene89774 | 0.808829 | 2.55E-50 | -1.69E-46 |
| MS.gene049549 | MS.gene89774 | 0.84442 | 7.65E-59 | -1.69E-46 |
| MS.gene049611 | MS.gene89774 | 0.812702 | 3.71E-51 | -1.69E-46 |
| MS.gene049634 | MS.gene89774 | 0.803235 | 3.84E-49 | -1.69E-46 |
| MS.gene050095 | MS.gene89774 | 0.810663 | 1.03E-50 | -1.69E-46 |
| MS.gene050096 | MS.gene89774 | 0.826533 | 2.58E-54 | -1.69E-46 |
| MS.gene050381 | MS.gene89774 | 0.803981 | 2.69E-49 | -1.69E-46 |
| MS.gene050647 | MS.gene89774 | 0.829104 | 6.20E-55 | -1.69E-46 |
| MS.gene05079 | MS.gene89774 | 0.804282 | 2.33E-49 | -1.69E-46 |
| MS.gene050809 | MS.gene89774 | 0.813199 | 2.89E-51 | -1.69E-46 |
| MS.gene05104 | MS.gene89774 | 0.828359 | 9.39E-55 | -1.69E-46 |
| MS.gene051131 | MS.gene89774 | 0.836958 | 6.89E-57 | -1.69E-46 |
| MS.gene051138 | MS.gene89774 | 0.826812 | 2.21E-54 | -1.69E-46 |
| MS.gene051651 | MS.gene89774 | 0.807998 | 3.84E-50 | -1.69E-46 |
| MS.gene051874 | MS.gene89774 | -0.817363 | 3.43E-52 | -1.69E-46 |
| MS.gene052211 | MS.gene89774 | 0.816111 | 6.54E-52 | -1.69E-46 |
| MS.gene05240 | MS.gene89774 | 0.852298 | 5.06E-61 | -1.69E-46 |
| MS.gene05244 | MS.gene89774 | 0.852323 | 4.98E-61 | -1.69E-46 |
| MS.gene052606 | MS.gene89774 | 0.819448 | 1.16E-52 | -1.69E-46 |
| MS.gene052805 | MS.gene89774 | 0.813212 | 2.87E-51 | -1.69E-46 |
| MS.gene053030 | MS.gene89774 | 0.835078 | 2.07E-56 | -1.69E-46 |
| MS.gene053031 | MS.gene89774 | 0.862405 | 5.19E-64 | -1.69E-46 |
| MS.gene053033 | MS.gene89774 | 0.866022 | 3.86E-65 | -1.69E-46 |
| MS.gene053406 | MS.gene89774 | 0.81 | 1.43E-50 | -1.69E-46 |
| MS.gene053420 | MS.gene89774 | 0.841666 | 4.14E-58 | -1.69E-46 |
| MS.gene054146 | MS.gene89774 | 0.827158 | 1.83E-54 | -1.69E-46 |
| MS.gene054181 | MS.gene89774 | 0.859336 | 4.44E-63 | -1.69E-46 |
| MS.gene054290 | MS.gene89774 | 0.828406 | 9.15E-55 | -1.69E-46 |
| MS.gene054421 | MS.gene89774 | 0.818271 | 2.14E-52 | -1.69E-46 |
| MS.gene054742 | MS.gene89774 | 0.834112 | 3.62E-56 | -1.69E-46 |
| MS.gene05483 | MS.gene89774 | 0.82893 | 6.84E-55 | -1.69E-46 |
| MS.gene054884 | MS.gene89774 | 0.800557 | 1.36E-48 | -1.69E-46 |
| MS.gene055158 | MS.gene89774 | 0.80661 | 7.57E-50 | -1.69E-46 |
| MS.gene055240 | MS.gene89774 | 0.807313 | 5.37E-50 | -1.69E-46 |
| MS.gene055741 | MS.gene89774 | -0.802157 | 6.41E-49 | -1.69E-46 |
| MS.gene055744 | MS.gene89774 | -0.802035 | 6.79E-49 | -1.69E-46 |
| MS.gene05589 | MS.gene89774 | -0.803215 | 3.88E-49 | -1.69E-46 |
| MS.gene055959 | MS.gene89774 | 0.807528 | 4.84E-50 | -1.69E-46 |
| MS.gene056218 | MS.gene89774 | 0.801591 | 8.38E-49 | -1.69E-46 |
| MS.gene056590 | MS.gene89774 | 0.827761 | 1.31E-54 | -1.69E-46 |
| MS.gene056591 | MS.gene89774 | 0.82676 | 2.27E-54 | -1.69E-46 |
| MS.gene056697 | MS.gene89774 | 0.811354 | 7.30E-51 | -1.69E-46 |
| MS.gene056856 | MS.gene89774 | 0.837821 | 4.15E-57 | -1.69E-46 |
| MS.gene056920 | MS.gene89774 | 0.80467 | 1.93E-49 | -1.69E-46 |
| MS.gene057544 | MS.gene89774 | 0.833543 | 5.02E-56 | -1.69E-46 |
| MS.gene057547 | MS.gene89774 | 0.816317 | 5.88E-52 | -1.69E-46 |
| MS.gene057768 | MS.gene89774 | 0.80104 | 1.09E-48 | -1.69E-46 |
| MS.gene058067 | MS.gene89774 | 0.806383 | 8.45E-50 | -1.69E-46 |
| MS.gene058068 | MS.gene89774 | 0.806925 | 6.49E-50 | -1.69E-46 |
| MS.gene058099 | MS.gene89774 | 0.821305 | 4.33E-53 | -1.69E-46 |
| MS.gene058603 | MS.gene89774 | 0.810606 | 1.06E-50 | -1.69E-46 |
| MS.gene059037 | MS.gene89774 | 0.803054 | 4.19E-49 | -1.69E-46 |
| MS.gene059401 | MS.gene89774 | 0.80321 | 3.89E-49 | -1.69E-46 |
| MS.gene059402 | MS.gene89774 | 0.857441 | 1.63E-62 | -1.69E-46 |
| MS.gene059953 | MS.gene89774 | 0.825335 | 4.96E-54 | -1.69E-46 |
| MS.gene059955 | MS.gene89774 | 0.850449 | 1.69E-60 | -1.69E-46 |
| MS.gene06000 | MS.gene89774 | -0.801345 | 9.41E-49 | -1.69E-46 |
| MS.gene060593 | MS.gene89774 | 0.811861 | 5.67E-51 | -1.69E-46 |
PPI:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene89774.t1 | MTR_5g046410 | 97.748 | 222 | 4 | 1 | 1 | 222 | 1 | 221 | 1.63e-157 | 435 |
| MS.gene89774.t1 | MTR_5g046430 | 97.748 | 222 | 4 | 1 | 1 | 222 | 1 | 221 | 1.63e-157 | 435 |
| MS.gene89774.t1 | MTR_4g017030 | 97.748 | 222 | 4 | 1 | 1 | 222 | 1 | 221 | 1.63e-157 | 435 |
| MS.gene89774.t1 | MTR_4g017050 | 97.297 | 222 | 5 | 1 | 1 | 222 | 1 | 221 | 4.78e-157 | 434 |
| MS.gene89774.t1 | MTR_2g019250 | 95.495 | 222 | 9 | 1 | 1 | 222 | 1 | 221 | 2.68e-155 | 429 |
| MS.gene89774.t1 | MTR_4g017040 | 95.946 | 222 | 8 | 1 | 1 | 222 | 1 | 221 | 2.74e-155 | 429 |
| MS.gene89774.t1 | MTR_1g079490 | 79.372 | 223 | 44 | 2 | 1 | 222 | 1 | 222 | 1.58e-126 | 357 |
| MS.gene89774.t1 | MTR_6g005340 | 76.682 | 223 | 48 | 3 | 1 | 222 | 1 | 220 | 1.15e-117 | 334 |
| MS.gene89774.t1 | MTR_6g005330 | 76.233 | 223 | 49 | 3 | 1 | 222 | 1 | 220 | 1.23e-117 | 334 |
| MS.gene89774.t1 | MTR_6g005360 | 74.775 | 222 | 54 | 1 | 1 | 222 | 1 | 220 | 1.24e-117 | 334 |
| MS.gene89774.t1 | MTR_6g005310 | 76.577 | 222 | 48 | 3 | 1 | 221 | 1 | 219 | 2.98e-117 | 333 |
| MS.gene89774.t1 | MTR_6g005350 | 62.162 | 222 | 81 | 2 | 1 | 222 | 1 | 219 | 4.49e-91 | 267 |
| MS.gene89774.t1 | MTR_6g005380 | 60.766 | 209 | 81 | 1 | 1 | 209 | 1 | 208 | 2.63e-87 | 257 |
| MS.gene89774.t1 | MTR_1g023770 | 58.716 | 218 | 78 | 3 | 1 | 216 | 1 | 208 | 2.64e-80 | 239 |
| MS.gene89774.t1 | MTR_2g030855 | 59.701 | 201 | 70 | 4 | 19 | 216 | 19 | 211 | 1.40e-76 | 229 |
| MS.gene89774.t1 | MTR_2g031270 | 56.818 | 220 | 83 | 5 | 1 | 216 | 1 | 212 | 1.39e-72 | 219 |
| MS.gene89774.t1 | MTR_2g030895 | 63.218 | 174 | 57 | 4 | 47 | 216 | 7 | 177 | 4.45e-70 | 212 |
| MS.gene89774.t1 | MTR_2g030865 | 62.644 | 174 | 58 | 4 | 47 | 216 | 7 | 177 | 4.28e-68 | 207 |
| MS.gene89774.t1 | MTR_1g085500 | 46.296 | 216 | 108 | 3 | 3 | 216 | 4 | 213 | 4.68e-61 | 191 |
| MS.gene89774.t1 | MTR_1g085140 | 46.269 | 201 | 100 | 3 | 18 | 216 | 20 | 214 | 2.79e-54 | 173 |
| MS.gene89774.t1 | MTR_7g111240 | 47.716 | 197 | 95 | 3 | 22 | 216 | 20 | 210 | 8.72e-53 | 169 |
| MS.gene89774.t1 | MTR_7g111240 | 47.716 | 197 | 92 | 3 | 22 | 216 | 20 | 207 | 1.72e-51 | 166 |
| MS.gene89774.t1 | MTR_2g031300 | 53.488 | 172 | 54 | 4 | 47 | 215 | 7 | 155 | 1.88e-50 | 161 |
| MS.gene89774.t1 | MTR_5g036570 | 45.455 | 198 | 99 | 4 | 22 | 216 | 27 | 218 | 1.51e-48 | 159 |
| MS.gene89774.t1 | MTR_1g112200 | 41.500 | 200 | 102 | 5 | 19 | 216 | 20 | 206 | 4.02e-44 | 147 |
| MS.gene89774.t1 | MTR_1g060120 | 36.036 | 222 | 129 | 5 | 2 | 216 | 5 | 220 | 2.71e-41 | 140 |
| MS.gene89774.t1 | MTR_2g041550 | 40.845 | 213 | 108 | 5 | 4 | 214 | 7 | 203 | 1.85e-40 | 137 |
| MS.gene89774.t1 | MTR_2g041570 | 38.140 | 215 | 115 | 5 | 3 | 215 | 6 | 204 | 6.23e-39 | 134 |
| MS.gene89774.t1 | MTR_2g041580 | 38.318 | 214 | 114 | 5 | 3 | 214 | 6 | 203 | 6.64e-39 | 134 |
| MS.gene89774.t1 | MTR_8g007300 | 40.299 | 201 | 106 | 4 | 22 | 220 | 26 | 214 | 1.85e-36 | 127 |
| MS.gene89774.t1 | MTR_8g020750 | 40.404 | 198 | 97 | 5 | 1 | 191 | 1 | 184 | 4.74e-35 | 124 |
| MS.gene89774.t1 | MTR_3g019710 | 39.691 | 194 | 106 | 5 | 7 | 198 | 3 | 187 | 1.85e-33 | 119 |
| MS.gene89774.t1 | MTR_8g020590 | 37.788 | 217 | 118 | 6 | 1 | 215 | 1 | 202 | 2.57e-33 | 119 |
| MS.gene89774.t1 | MTR_8g020630 | 39.205 | 176 | 97 | 4 | 7 | 180 | 3 | 170 | 5.53e-33 | 118 |
| MS.gene89774.t1 | MTR_2g036120 | 37.264 | 212 | 116 | 6 | 1 | 207 | 1 | 200 | 4.26e-31 | 113 |
| MS.gene89774.t1 | MTR_8g020650 | 36.269 | 193 | 111 | 5 | 26 | 216 | 22 | 204 | 7.35e-31 | 113 |
| MS.gene89774.t1 | MTR_8g020770 | 41.111 | 180 | 93 | 4 | 1 | 177 | 1 | 170 | 8.09e-31 | 113 |
| MS.gene89774.t1 | MTR_8g020670 | 34.419 | 215 | 123 | 6 | 4 | 216 | 6 | 204 | 8.03e-30 | 110 |
| MS.gene89774.t1 | MTR_3g019650 | 40.000 | 175 | 94 | 5 | 26 | 198 | 21 | 186 | 1.14e-29 | 110 |
| MS.gene89774.t1 | MTR_3g019680 | 37.563 | 197 | 105 | 6 | 4 | 198 | 6 | 186 | 1.24e-29 | 109 |
| MS.gene89774.t1 | MTR_0284s0010 | 36.893 | 206 | 117 | 5 | 7 | 207 | 3 | 200 | 2.65e-29 | 108 |
| MS.gene89774.t1 | MTR_2g044040 | 36.782 | 174 | 100 | 4 | 7 | 178 | 3 | 168 | 9.53e-29 | 107 |
| MS.gene89774.t1 | MTR_2g086640 | 34.404 | 218 | 116 | 7 | 2 | 215 | 7 | 201 | 1.24e-28 | 107 |
| MS.gene89774.t1 | MTR_2g086620 | 43.182 | 132 | 68 | 3 | 85 | 215 | 77 | 202 | 1.56e-28 | 107 |
| MS.gene89774.t1 | MTR_4g052780 | 36.585 | 205 | 103 | 6 | 16 | 215 | 21 | 203 | 1.87e-28 | 106 |
| MS.gene89774.t1 | MTR_2g045100 | 41.290 | 155 | 81 | 4 | 26 | 178 | 22 | 168 | 3.61e-28 | 106 |
| MS.gene89774.t1 | MTR_4g052770 | 36.098 | 205 | 104 | 6 | 16 | 215 | 21 | 203 | 3.62e-28 | 105 |
| MS.gene89774.t1 | MTR_2g086630 | 42.424 | 132 | 69 | 3 | 85 | 215 | 77 | 202 | 4.87e-28 | 105 |
| MS.gene89774.t1 | MTR_3g096330 | 38.333 | 180 | 104 | 3 | 3 | 180 | 558 | 732 | 1.19e-27 | 110 |
| MS.gene89774.t1 | MTR_5g031460 | 34.597 | 211 | 123 | 5 | 1 | 207 | 1 | 200 | 8.04e-27 | 102 |
| MS.gene89774.t1 | MTR_4g010340 | 35.000 | 220 | 118 | 7 | 1 | 216 | 2 | 200 | 1.74e-25 | 99.0 |
| MS.gene89774.t1 | MTR_8g020760 | 33.945 | 218 | 130 | 6 | 1 | 216 | 1 | 206 | 1.98e-25 | 99.0 |
| MS.gene89774.t1 | MTR_7g011340 | 37.433 | 187 | 104 | 5 | 26 | 207 | 22 | 200 | 2.92e-25 | 98.6 |
| MS.gene89774.t1 | MTR_8g020763 | 36.471 | 170 | 98 | 3 | 43 | 207 | 17 | 181 | 1.66e-24 | 95.9 |
| MS.gene89774.t1 | MTR_2g019780 | 32.727 | 220 | 131 | 7 | 1 | 216 | 1 | 207 | 2.41e-24 | 96.3 |
| MS.gene89774.t1 | MTR_3g073170 | 34.896 | 192 | 109 | 6 | 28 | 216 | 27 | 205 | 5.65e-24 | 95.1 |
| MS.gene89774.t1 | MTR_8g020610 | 33.333 | 216 | 126 | 7 | 1 | 214 | 1 | 200 | 1.03e-23 | 94.4 |
| MS.gene89774.t1 | MTR_2g030915 | 48.052 | 77 | 24 | 1 | 93 | 169 | 1 | 61 | 9.85e-18 | 75.9 |
| MS.gene89774.t1 | MTR_3g019810 | 33.495 | 206 | 114 | 9 | 1 | 203 | 107 | 292 | 1.13e-17 | 80.1 |
| MS.gene89774.t1 | MTR_4g027415 | 37.984 | 129 | 70 | 4 | 26 | 152 | 22 | 142 | 1.85e-16 | 73.6 |
| MS.gene89774.t1 | MTR_2g072560 | 36.066 | 122 | 69 | 4 | 1 | 120 | 1 | 115 | 1.79e-12 | 63.2 |
| MS.gene89774.t1 | MTR_3g019610 | 37.736 | 106 | 61 | 3 | 7 | 110 | 3 | 105 | 8.61e-11 | 57.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene89774.t1 | AT3G05950 | 64.602 | 226 | 71 | 5 | 4 | 222 | 5 | 228 | 9.99e-95 | 276 |
| MS.gene89774.t1 | AT5G39150 | 63.679 | 212 | 73 | 3 | 7 | 216 | 9 | 218 | 5.17e-92 | 269 |
| MS.gene89774.t1 | AT5G39120 | 63.679 | 212 | 73 | 3 | 7 | 216 | 9 | 218 | 1.03e-91 | 268 |
| MS.gene89774.t1 | AT5G39180 | 63.679 | 212 | 73 | 3 | 7 | 216 | 9 | 218 | 1.19e-91 | 268 |
| MS.gene89774.t1 | AT5G39110 | 63.208 | 212 | 75 | 2 | 7 | 216 | 9 | 219 | 4.39e-90 | 264 |
| MS.gene89774.t1 | AT5G39160 | 64.762 | 210 | 70 | 3 | 9 | 216 | 11 | 218 | 4.63e-90 | 264 |
| MS.gene89774.t1 | AT5G39190 | 64.762 | 210 | 70 | 3 | 9 | 216 | 11 | 218 | 9.54e-90 | 263 |
| MS.gene89774.t1 | AT5G39130 | 63.810 | 210 | 72 | 3 | 9 | 216 | 11 | 218 | 2.75e-89 | 262 |
| MS.gene89774.t1 | AT4G14630 | 59.545 | 220 | 84 | 3 | 1 | 216 | 3 | 221 | 9.80e-86 | 253 |
| MS.gene89774.t1 | AT5G39160 | 62.381 | 210 | 71 | 3 | 9 | 216 | 11 | 214 | 3.67e-85 | 252 |
| MS.gene89774.t1 | AT3G04200 | 61.722 | 209 | 76 | 4 | 8 | 214 | 13 | 219 | 4.05e-82 | 244 |
| MS.gene89774.t1 | AT5G38910 | 59.276 | 221 | 82 | 4 | 1 | 216 | 1 | 218 | 2.55e-79 | 237 |
| MS.gene89774.t1 | AT5G39190 | 58.654 | 208 | 64 | 2 | 9 | 216 | 11 | 196 | 1.34e-77 | 232 |
| MS.gene89774.t1 | AT5G38930 | 61.307 | 199 | 73 | 2 | 20 | 216 | 24 | 220 | 1.43e-77 | 233 |
| MS.gene89774.t1 | AT5G38940 | 60.406 | 197 | 74 | 2 | 22 | 216 | 26 | 220 | 1.45e-77 | 233 |
| MS.gene89774.t1 | AT5G38940 | 60.406 | 197 | 74 | 2 | 22 | 216 | 50 | 244 | 2.25e-77 | 233 |
| MS.gene89774.t1 | AT5G39160 | 58.173 | 208 | 65 | 2 | 9 | 216 | 11 | 196 | 2.88e-77 | 231 |
| MS.gene89774.t1 | AT5G38960 | 59.406 | 202 | 77 | 3 | 18 | 216 | 22 | 221 | 3.70e-77 | 231 |
| MS.gene89774.t1 | AT3G04170 | 55.238 | 210 | 87 | 4 | 8 | 215 | 12 | 216 | 8.29e-73 | 221 |
| MS.gene89774.t1 | AT3G04190 | 55.446 | 202 | 86 | 3 | 15 | 214 | 19 | 218 | 2.94e-72 | 219 |
| MS.gene89774.t1 | AT3G04150 | 53.917 | 217 | 93 | 4 | 4 | 215 | 5 | 219 | 3.45e-72 | 219 |
| MS.gene89774.t1 | AT3G04150 | 51.092 | 229 | 94 | 4 | 4 | 215 | 5 | 232 | 3.51e-70 | 214 |
| MS.gene89774.t1 | AT3G04180 | 53.960 | 202 | 89 | 3 | 15 | 214 | 19 | 218 | 2.69e-69 | 211 |
| MS.gene89774.t1 | AT1G02335 | 43.721 | 215 | 113 | 3 | 4 | 216 | 6 | 214 | 9.63e-57 | 179 |
| MS.gene89774.t1 | AT5G38910 | 48.416 | 221 | 69 | 4 | 1 | 216 | 1 | 181 | 7.98e-56 | 176 |
| MS.gene89774.t1 | AT3G62020 | 46.262 | 214 | 105 | 5 | 6 | 216 | 8 | 214 | 1.22e-55 | 177 |
| MS.gene89774.t1 | AT1G09560 | 45.050 | 202 | 103 | 3 | 17 | 216 | 19 | 214 | 1.79e-53 | 171 |
| MS.gene89774.t1 | AT3G05930 | 47.783 | 203 | 96 | 4 | 4 | 203 | 6 | 201 | 2.53e-53 | 171 |
| MS.gene89774.t1 | AT5G26700 | 49.457 | 184 | 78 | 5 | 26 | 205 | 25 | 197 | 3.08e-51 | 165 |
| MS.gene89774.t1 | AT1G18970 | 45.274 | 201 | 100 | 4 | 18 | 216 | 25 | 217 | 7.40e-50 | 162 |
| MS.gene89774.t1 | AT1G18980 | 45.771 | 201 | 99 | 4 | 18 | 216 | 25 | 217 | 1.47e-48 | 159 |
| MS.gene89774.t1 | AT3G62020 | 46.961 | 181 | 89 | 3 | 39 | 216 | 9 | 185 | 4.25e-48 | 157 |
| MS.gene89774.t1 | AT1G10460 | 41.709 | 199 | 107 | 5 | 22 | 215 | 19 | 213 | 6.12e-45 | 149 |
| MS.gene89774.t1 | AT3G10080 | 39.409 | 203 | 113 | 5 | 18 | 216 | 22 | 218 | 1.67e-43 | 146 |
| MS.gene89774.t1 | AT3G10080 | 39.409 | 203 | 113 | 5 | 18 | 216 | 93 | 289 | 8.02e-43 | 146 |
| MS.gene89774.t1 | AT5G61750 | 41.398 | 186 | 103 | 2 | 4 | 187 | 1 | 182 | 1.94e-40 | 137 |
| MS.gene89774.t1 | AT5G20630 | 40.758 | 211 | 112 | 6 | 1 | 209 | 1 | 200 | 7.36e-40 | 136 |
| MS.gene89774.t1 | AT1G74820 | 39.175 | 194 | 108 | 4 | 25 | 216 | 39 | 224 | 8.30e-33 | 118 |
| MS.gene89774.t1 | AT1G72610 | 40.314 | 191 | 104 | 6 | 26 | 214 | 19 | 201 | 8.47e-33 | 118 |
| MS.gene89774.t1 | AT5G38950 | 54.167 | 72 | 33 | 0 | 146 | 217 | 2 | 73 | 1.25e-18 | 78.2 |
| MS.gene89774.t1 | AT5G39100 | 72.000 | 50 | 14 | 0 | 7 | 56 | 9 | 58 | 7.94e-18 | 74.7 |
Find 57 sgRNAs with CRISPR-Local
Find 71 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTTCAACTGAATGTTGGATA+TGG | 0.274546 | 4.4:+83688955 | MS.gene89774:CDS |
| TATATGCATACCACCATCTT+TGG | 0.276500 | 4.4:-83688379 | None:intergenic |
| TAACACTCTTGGTATATCTT+TGG | 0.286436 | 4.4:+83688741 | MS.gene89774:CDS |
| CCTTGTTAGCATCCTGGCTT+TGG | 0.313379 | 4.4:+83688290 | MS.gene89774:CDS |
| CTTATCCACTTGAAAAGCTT+TGG | 0.335788 | 4.4:-83689082 | None:intergenic |
| TGAAAATGAATGAGACCAAT+TGG | 0.343118 | 4.4:-83688937 | None:intergenic |
| GACTGCCTTCAAGTACTATA+AGG | 0.359669 | 4.4:-83688828 | None:intergenic |
| ATATGCATACCACCATCTTT+GGG | 0.396736 | 4.4:-83688378 | None:intergenic |
| TTGAGAGCCTAGTGCGTTTG+AGG | 0.397728 | 4.4:-83688683 | None:intergenic |
| TTCTTCAAACATGTTGAAGC+TGG | 0.402098 | 4.4:+83688655 | MS.gene89774:CDS |
| CTCTAGGGTGGATGTGAGGT+GGG | 0.411548 | 4.4:-83688795 | None:intergenic |
| TTGGAGAGGGCTAGGGTCAT+AGG | 0.420416 | 4.4:-83688331 | None:intergenic |
| GATGTGTTTGTGTTCCCAAT+TGG | 0.424230 | 4.4:+83688922 | MS.gene89774:CDS |
| GGCAACGCGGTTGCTATCGC+TGG | 0.429748 | 4.4:+83688976 | MS.gene89774:CDS |
| CAAAAGTCTTGGAGAGGGCT+AGG | 0.434671 | 4.4:-83688339 | None:intergenic |
| CATCCTGGCTTTGGCATCCT+CGG | 0.435136 | 4.4:+83688299 | MS.gene89774:CDS |
| ATTATCTTCAAAAGCAGTCT+TGG | 0.442184 | 4.4:+83689115 | MS.gene89774:CDS |
| TCTTCAGCTTTAACAAGTGC+GGG | 0.444792 | 4.4:-83688631 | None:intergenic |
| GTCACTGTAGACCAACTATT+CGG | 0.446134 | 4.4:+83688715 | MS.gene89774:CDS |
| GAGATCCTTATAGTACTTGA+AGG | 0.457154 | 4.4:+83688823 | MS.gene89774:CDS |
| TACTTTGCAGTATTTGTGAA+TGG | 0.463825 | 4.4:+83688592 | MS.gene89774:intron |
| TTTGCAACTGTGATAACTCC+TGG | 0.466515 | 4.4:-83689015 | None:intergenic |
| ATAAGGATCTCTGTTCCTCT+AGG | 0.468428 | 4.4:-83688811 | None:intergenic |
| ATACTTCCTTGTTAGCATCC+TGG | 0.478166 | 4.4:+83688284 | MS.gene89774:CDS |
| CTATTCGGACTTAACACTCT+TGG | 0.480493 | 4.4:+83688730 | MS.gene89774:CDS |
| CTTGAAGGCAGTCTTTATGT+TGG | 0.489113 | 4.4:+83688838 | MS.gene89774:CDS |
| TGATTGCAACACAAAAGTCT+TGG | 0.490396 | 4.4:-83688350 | None:intergenic |
| CCTCTAGGGTGGATGTGAGG+TGG | 0.496940 | 4.4:-83688796 | None:intergenic |
| TCTTCAAACATGTTGAAGCT+GGG | 0.501315 | 4.4:+83688656 | MS.gene89774:CDS |
| CAACCGAGGATGCCAAAGCC+AGG | 0.505056 | 4.4:-83688302 | None:intergenic |
| AGAACTTCGTCGGAAATAAG+AGG | 0.511108 | 4.4:-83689057 | None:intergenic |
| GAAAATGAATGAGACCAATT+GGG | 0.515333 | 4.4:-83688936 | None:intergenic |
| CCAAAGCCAGGATGCTAACA+AGG | 0.515624 | 4.4:-83688290 | None:intergenic |
| GAGTGTTAAGTCCGAATAGT+TGG | 0.535207 | 4.4:-83688726 | None:intergenic |
| TGAGGTGGGTTTAAACCCTT+AGG | 0.537084 | 4.4:-83688781 | None:intergenic |
| ATCTTCAGCTTTAACAAGTG+CGG | 0.543612 | 4.4:-83688632 | None:intergenic |
| CTTTACCAAGGTGCTCAACA+AGG | 0.544491 | 4.4:+83688897 | MS.gene89774:CDS |
| GGGAATGCCTCAAACGCACT+AGG | 0.554068 | 4.4:+83688676 | MS.gene89774:CDS |
| GCAATCAAAGACCCCAAAGA+TGG | 0.554146 | 4.4:+83688366 | MS.gene89774:CDS |
| AGCTTTGGTAAGAACTTCGT+CGG | 0.555884 | 4.4:-83689067 | None:intergenic |
| AAAAGTCTTGGAGAGGGCTA+GGG | 0.564154 | 4.4:-83688338 | None:intergenic |
| ATCACCCTTGTTGAGCACCT+TGG | 0.567836 | 4.4:-83688902 | None:intergenic |
| TAAGGATCTCTGTTCCTCTA+GGG | 0.571738 | 4.4:-83688810 | None:intergenic |
| GGACTTAGCAGTCAAAATCC+AGG | 0.578792 | 4.4:+83688997 | MS.gene89774:CDS |
| GGATCTCTGTTCCTCTAGGG+TGG | 0.590427 | 4.4:-83688807 | None:intergenic |
| AGGGCTAGGGTCATAGGCAA+AGG | 0.609226 | 4.4:-83688325 | None:intergenic |
| ATCAAAGACCCCAAAGATGG+TGG | 0.628410 | 4.4:+83688369 | MS.gene89774:CDS |
| TATGCATACCACCATCTTTG+GGG | 0.639622 | 4.4:-83688377 | None:intergenic |
| CAACACAAAAGTCTTGGAGA+GGG | 0.641422 | 4.4:-83688344 | None:intergenic |
| GTTCCTCTAGGGTGGATGTG+AGG | 0.650118 | 4.4:-83688799 | None:intergenic |
| GCAACACAAAAGTCTTGGAG+AGG | 0.651085 | 4.4:-83688345 | None:intergenic |
| GTCATAGGCAAAGGCAACCG+AGG | 0.652490 | 4.4:-83688316 | None:intergenic |
| TTTACCAAGGTGCTCAACAA+GGG | 0.659466 | 4.4:+83688898 | MS.gene89774:CDS |
| CCACCTCACATCCACCCTAG+AGG | 0.660499 | 4.4:+83688796 | MS.gene89774:CDS |
| CTTCAGCTTTAACAAGTGCG+GGG | 0.662073 | 4.4:-83688630 | None:intergenic |
| CAATAATCGTCTCTTTACCA+AGG | 0.672342 | 4.4:+83688885 | MS.gene89774:CDS |
| GAATGTTGGATATGGCAACG+CGG | 0.840401 | 4.4:+83688963 | MS.gene89774:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAAAAAAAAAAATTTAT+AGG | - | chr4.4:83688495-83688514 | None:intergenic | 0.0% |
| !! | AAAAAAAAAAAAAATTTATA+GGG | - | chr4.4:83688494-83688513 | None:intergenic | 0.0% |
| !!! | ATAAATTTTTTTTTTTTTTT+TGG | + | chr4.4:83688495-83688514 | MS.gene89774:intron | 0.0% |
| !! | TCTACAAATATTAGACTTAT+TGG | + | chr4.4:83688461-83688480 | MS.gene89774:intron | 20.0% |
| !!! | AGATATAGAATCTTTTGTTT+TGG | + | chr4.4:83688531-83688550 | MS.gene89774:intron | 20.0% |
| ! | AATCATAGTTTAGTTAAACC+AGG | - | chr4.4:83688569-83688588 | None:intergenic | 25.0% |
| ! | CAAAAGATTCTATATCTACA+TGG | - | chr4.4:83688528-83688547 | None:intergenic | 25.0% |
| ! | GTAATCAAGACTTAAAGTTA+AGG | - | chr4.4:83688407-83688426 | None:intergenic | 25.0% |
| !! | ATTCATTTTCAACTGAATGT+TGG | + | chr4.4:83688949-83688968 | MS.gene89774:CDS | 25.0% |
| ATTATCTTCAAAAGCAGTCT+TGG | + | chr4.4:83689115-83689134 | MS.gene89774:CDS | 30.0% | |
| GAAAATGAATGAGACCAATT+GGG | - | chr4.4:83688939-83688958 | None:intergenic | 30.0% | |
| TAACACTCTTGGTATATCTT+TGG | + | chr4.4:83688741-83688760 | MS.gene89774:CDS | 30.0% | |
| TACTTTGCAGTATTTGTGAA+TGG | + | chr4.4:83688592-83688611 | MS.gene89774:intron | 30.0% | |
| TGAAAATGAATGAGACCAAT+TGG | - | chr4.4:83688940-83688959 | None:intergenic | 30.0% | |
| TTTCAACTGAATGTTGGATA+TGG | + | chr4.4:83688955-83688974 | MS.gene89774:CDS | 30.0% | |
| !!! | GAATCTTTTGTTTTGGTTCA+TGG | + | chr4.4:83688538-83688557 | MS.gene89774:intron | 30.0% |
| ATATGCATACCACCATCTTT+GGG | - | chr4.4:83688381-83688400 | None:intergenic | 35.0% | |
| CAATAATCGTCTCTTTACCA+AGG | + | chr4.4:83688885-83688904 | MS.gene89774:CDS | 35.0% | |
| CTTATCCACTTGAAAAGCTT+TGG | - | chr4.4:83689085-83689104 | None:intergenic | 35.0% | |
| GAGATCCTTATAGTACTTGA+AGG | + | chr4.4:83688823-83688842 | MS.gene89774:CDS | 35.0% | |
| TATATGCATACCACCATCTT+TGG | - | chr4.4:83688382-83688401 | None:intergenic | 35.0% | |
| TCTTCAAACATGTTGAAGCT+GGG | + | chr4.4:83688656-83688675 | MS.gene89774:CDS | 35.0% | |
| TGATTGCAACACAAAAGTCT+TGG | - | chr4.4:83688353-83688372 | None:intergenic | 35.0% | |
| TTCTTCAAACATGTTGAAGC+TGG | + | chr4.4:83688655-83688674 | MS.gene89774:CDS | 35.0% | |
| ! | ATCTTCAGCTTTAACAAGTG+CGG | - | chr4.4:83688635-83688654 | None:intergenic | 35.0% |
| !! | TCTTACCAAAGCTTTTCAAG+TGG | + | chr4.4:83689077-83689096 | MS.gene89774:CDS | 35.0% |
| AGAACTTCGTCGGAAATAAG+AGG | - | chr4.4:83689060-83689079 | None:intergenic | 40.0% | |
| ATAAGGATCTCTGTTCCTCT+AGG | - | chr4.4:83688814-83688833 | None:intergenic | 40.0% | |
| ATACTTCCTTGTTAGCATCC+TGG | + | chr4.4:83688284-83688303 | MS.gene89774:CDS | 40.0% | |
| CAACACAAAAGTCTTGGAGA+GGG | - | chr4.4:83688347-83688366 | None:intergenic | 40.0% | |
| CTATTCGGACTTAACACTCT+TGG | + | chr4.4:83688730-83688749 | MS.gene89774:CDS | 40.0% | |
| CTTGAAGGCAGTCTTTATGT+TGG | + | chr4.4:83688838-83688857 | MS.gene89774:CDS | 40.0% | |
| GACTGCCTTCAAGTACTATA+AGG | - | chr4.4:83688831-83688850 | None:intergenic | 40.0% | |
| GAGTGTTAAGTCCGAATAGT+TGG | - | chr4.4:83688729-83688748 | None:intergenic | 40.0% | |
| GATGTGTTTGTGTTCCCAAT+TGG | + | chr4.4:83688922-83688941 | MS.gene89774:CDS | 40.0% | |
| GTCACTGTAGACCAACTATT+CGG | + | chr4.4:83688715-83688734 | MS.gene89774:CDS | 40.0% | |
| TAAGGATCTCTGTTCCTCTA+GGG | - | chr4.4:83688813-83688832 | None:intergenic | 40.0% | |
| TATGCATACCACCATCTTTG+GGG | - | chr4.4:83688380-83688399 | None:intergenic | 40.0% | |
| TTTGCAACTGTGATAACTCC+TGG | - | chr4.4:83689018-83689037 | None:intergenic | 40.0% | |
| ! | AGCTTTGGTAAGAACTTCGT+CGG | - | chr4.4:83689070-83689089 | None:intergenic | 40.0% |
| ! | TCTTCAGCTTTAACAAGTGC+GGG | - | chr4.4:83688634-83688653 | None:intergenic | 40.0% |
| ! | TTTACCAAGGTGCTCAACAA+GGG | + | chr4.4:83688898-83688917 | MS.gene89774:CDS | 40.0% |
| !!! | TTTTGGTTCATGGTGTTTCC+TGG | + | chr4.4:83688548-83688567 | MS.gene89774:intron | 40.0% |
| AAAAGTCTTGGAGAGGGCTA+GGG | - | chr4.4:83688341-83688360 | None:intergenic | 45.0% | |
| ATCAAAGACCCCAAAGATGG+TGG | + | chr4.4:83688369-83688388 | MS.gene89774:CDS | 45.0% | |
| GAATGTTGGATATGGCAACG+CGG | + | chr4.4:83688963-83688982 | MS.gene89774:CDS | 45.0% | |
| GCAACACAAAAGTCTTGGAG+AGG | - | chr4.4:83688348-83688367 | None:intergenic | 45.0% | |
| GCAATCAAAGACCCCAAAGA+TGG | + | chr4.4:83688366-83688385 | MS.gene89774:CDS | 45.0% | |
| GGACTTAGCAGTCAAAATCC+AGG | + | chr4.4:83688997-83689016 | MS.gene89774:CDS | 45.0% | |
| ! | CTTCAGCTTTAACAAGTGCG+GGG | - | chr4.4:83688633-83688652 | None:intergenic | 45.0% |
| ! | CTTTACCAAGGTGCTCAACA+AGG | + | chr4.4:83688897-83688916 | MS.gene89774:CDS | 45.0% |
| ! | TGAGGTGGGTTTAAACCCTT+AGG | - | chr4.4:83688784-83688803 | None:intergenic | 45.0% |
| ATCACCCTTGTTGAGCACCT+TGG | - | chr4.4:83688905-83688924 | None:intergenic | 50.0% | |
| CAAAAGTCTTGGAGAGGGCT+AGG | - | chr4.4:83688342-83688361 | None:intergenic | 50.0% | |
| CCAAAGCCAGGATGCTAACA+AGG | - | chr4.4:83688293-83688312 | None:intergenic | 50.0% | |
| CCTTGTTAGCATCCTGGCTT+TGG | + | chr4.4:83688290-83688309 | MS.gene89774:CDS | 50.0% | |
| TTGAGAGCCTAGTGCGTTTG+AGG | - | chr4.4:83688686-83688705 | None:intergenic | 50.0% | |
| !!! | CGCGTTGATTTTGCGCCTAA+GGG | + | chr4.4:83688766-83688785 | MS.gene89774:CDS | 50.0% |
| !!! | TCGCGTTGATTTTGCGCCTA+AGG | + | chr4.4:83688765-83688784 | MS.gene89774:CDS | 50.0% |
| AGGGCTAGGGTCATAGGCAA+AGG | - | chr4.4:83688328-83688347 | None:intergenic | 55.0% | |
| GGGAATGCCTCAAACGCACT+AGG | + | chr4.4:83688676-83688695 | MS.gene89774:CDS | 55.0% | |
| GTCATAGGCAAAGGCAACCG+AGG | - | chr4.4:83688319-83688338 | None:intergenic | 55.0% | |
| TTGGAGAGGGCTAGGGTCAT+AGG | - | chr4.4:83688334-83688353 | None:intergenic | 55.0% | |
| ! | GGATCTCTGTTCCTCTAGGG+TGG | - | chr4.4:83688810-83688829 | None:intergenic | 55.0% |
| !! | CATCCTGGCTTTGGCATCCT+CGG | + | chr4.4:83688299-83688318 | MS.gene89774:CDS | 55.0% |
| !! | CTCTAGGGTGGATGTGAGGT+GGG | - | chr4.4:83688798-83688817 | None:intergenic | 55.0% |
| !! | GTTCCTCTAGGGTGGATGTG+AGG | - | chr4.4:83688802-83688821 | None:intergenic | 55.0% |
| CAACCGAGGATGCCAAAGCC+AGG | - | chr4.4:83688305-83688324 | None:intergenic | 60.0% | |
| CCACCTCACATCCACCCTAG+AGG | + | chr4.4:83688796-83688815 | MS.gene89774:CDS | 60.0% | |
| !! | CCTCTAGGGTGGATGTGAGG+TGG | - | chr4.4:83688799-83688818 | None:intergenic | 60.0% |
| GGCAACGCGGTTGCTATCGC+TGG | + | chr4.4:83688976-83688995 | MS.gene89774:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.4 | gene | 83688273 | 83689152 | 83688273 | ID=MS.gene89774 |
| chr4.4 | mRNA | 83688273 | 83689152 | 83688273 | ID=MS.gene89774.t1;Parent=MS.gene89774 |
| chr4.4 | exon | 83688273 | 83688390 | 83688273 | ID=MS.gene89774.t1.exon1;Parent=MS.gene89774.t1 |
| chr4.4 | CDS | 83688273 | 83688390 | 83688273 | ID=cds.MS.gene89774.t1;Parent=MS.gene89774.t1 |
| chr4.4 | exon | 83688602 | 83689152 | 83688602 | ID=MS.gene89774.t1.exon2;Parent=MS.gene89774.t1 |
| chr4.4 | CDS | 83688602 | 83689152 | 83688602 | ID=cds.MS.gene89774.t1;Parent=MS.gene89774.t1 |
| Gene Sequence |
| Protein sequence |
