AlfalfaGEDB | MS.gene50790

M. sativa cultivar XinJiangDaYe / MS.gene50790

KEGG: -
GO: GO:0003674 GO:0005488 GO:0030145 GO:0043167 GO:0043169 GO:0045735 GO:0046872 GO:0046914
PFAM: PF00190.25

Nr:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene50790.t1	XP_003604729.1	98.2	222	3	1	1	222	1	221	2.50E-117	431.4

Swissprot:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene50790.t1	Q9SFF9	65.2	224	69	5	6	222	7	228	2.1e-72	273.5

Trembl:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene50790.t1	G7JQ50	98.2	222	3	1	1	222	1	221	1.8e-117	431.4

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network:

Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene050529	MS.gene50790	-0.805133	1.55E-49	-1.69E-46
MS.gene050971	MS.gene50790	-0.809269	2.06E-50	-1.69E-46
MS.gene051158	MS.gene50790	0.80808	3.69E-50	-1.69E-46
MS.gene052188	MS.gene50790	-0.812683	3.75E-51	-1.69E-46
MS.gene05240	MS.gene50790	0.828601	8.21E-55	-1.69E-46
MS.gene05244	MS.gene50790	0.804288	2.32E-49	-1.69E-46
MS.gene053031	MS.gene50790	0.824298	8.71E-54	-1.69E-46
MS.gene053406	MS.gene50790	0.802173	6.36E-49	-1.69E-46
MS.gene054181	MS.gene50790	0.813716	2.22E-51	-1.69E-46
MS.gene054290	MS.gene50790	0.837964	3.81E-57	-1.69E-46
MS.gene055601	MS.gene50790	0.838658	2.52E-57	-1.69E-46
MS.gene055959	MS.gene50790	0.80687	6.67E-50	-1.69E-46
MS.gene056899	MS.gene50790	0.827944	1.18E-54	-1.69E-46
MS.gene057544	MS.gene50790	0.812448	4.22E-51	-1.69E-46
MS.gene058218	MS.gene50790	0.842636	2.29E-58	-1.69E-46
MS.gene058928	MS.gene50790	-0.82158	3.74E-53	-1.69E-46
MS.gene059043	MS.gene50790	0.824112	9.63E-54	-1.69E-46
MS.gene059294	MS.gene50790	-0.84931	3.51E-60	-1.69E-46
MS.gene059402	MS.gene50790	0.852006	6.13E-61	-1.69E-46

PPI:

Gene1	Gene2	Type
MS.gene50790	MS.gene005041	PPI
MS.gene50790	MS.gene82859	PPI
MS.gene50790	MS.gene89772	PPI
MS.gene037517	MS.gene50790	PPI
MS.gene056870	MS.gene50790	PPI
MS.gene50790	MS.gene07591	PPI
MS.gene50790	MS.gene70062	PPI
MS.gene50790	MS.gene96244	PPI
MS.gene50790	MS.gene004411	PPI
MS.gene50790	MS.gene034877	PPI
MS.gene032598	MS.gene50790	PPI
MS.gene89773	MS.gene50790	PPI
MS.gene50790	MS.gene50786	PPI
MS.gene50790	MS.gene053031	PPI
MS.gene70064	MS.gene50790	PPI
MS.gene74887	MS.gene50790	PPI
MS.gene50790	MS.gene50789	PPI
MS.gene50790	MS.gene70063	PPI
MS.gene50790	MS.gene50788	PPI
MS.gene032599	MS.gene50790	PPI
MS.gene50790	MS.gene037520	PPI
MS.gene053030	MS.gene50790	PPI
MS.gene50790	MS.gene037851	PPI
MS.gene50790	MS.gene82855	PPI
MS.gene50790	MS.gene81739	PPI
MS.gene50790	MS.gene70061	PPI
MS.gene053033	MS.gene50790	PPI
MS.gene053027	MS.gene50790	PPI
MS.gene50790	MS.gene002728	PPI
MS.gene50790	MS.gene032596	PPI
MS.gene50790	MS.gene037518	PPI
MS.gene50790	MS.gene50787	PPI
MS.gene50790	MS.gene037519	PPI
MS.gene50790	MS.gene053029	PPI
MS.gene50790	MS.gene055423	PPI
MS.gene50790	MS.gene047464	PPI
MS.gene50790	MS.gene89774	PPI
MS.gene50790	MS.gene82860	PPI
MS.gene032601	MS.gene50790	PPI
MS.gene50790	MS.gene053026	PPI
MS.gene053026	MS.gene50790	PPI
MS.gene50790	MS.gene032597	PPI
MS.gene50790	MS.gene82857	PPI
MS.gene50790	MS.gene037516	PPI
MS.gene89775	MS.gene50790	PPI
MS.gene82858	MS.gene50790	PPI
MS.gene50790	MS.gene022634	PPI
MS.gene50790	MS.gene99166	PPI

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene50790.t1	MTR_5g046410	98.198	222	3	1	1	222	1	221	3.87e-158	436
MS.gene50790.t1	MTR_5g046430	98.198	222	3	1	1	222	1	221	3.87e-158	436
MS.gene50790.t1	MTR_4g017030	98.198	222	3	1	1	222	1	221	3.87e-158	436
MS.gene50790.t1	MTR_4g017050	97.748	222	4	1	1	222	1	221	1.32e-157	435
MS.gene50790.t1	MTR_2g019250	95.946	222	8	1	1	222	1	221	6.23e-156	431
MS.gene50790.t1	MTR_4g017040	96.396	222	7	1	1	222	1	221	6.80e-156	431
MS.gene50790.t1	MTR_1g079490	79.372	223	44	2	1	222	1	222	6.96e-127	357
MS.gene50790.t1	MTR_6g005340	76.712	219	48	2	4	222	5	220	4.28e-117	333
MS.gene50790.t1	MTR_6g005330	76.233	223	49	3	1	222	1	220	6.41e-117	332
MS.gene50790.t1	MTR_6g005360	74.324	222	55	1	1	222	1	220	7.00e-117	332
MS.gene50790.t1	MTR_6g005310	76.606	218	48	2	4	221	5	219	1.66e-116	331
MS.gene50790.t1	MTR_6g005350	63.182	220	77	3	3	222	4	219	1.40e-90	265
MS.gene50790.t1	MTR_6g005380	60.766	209	81	1	1	209	1	208	8.48e-87	256
MS.gene50790.t1	MTR_1g023770	58.716	218	78	3	1	216	1	208	7.88e-80	238
MS.gene50790.t1	MTR_2g030855	59.701	201	70	4	19	216	19	211	1.34e-76	230
MS.gene50790.t1	MTR_2g031270	58.911	202	71	5	19	216	19	212	3.25e-72	219
MS.gene50790.t1	MTR_2g030895	63.218	174	57	4	47	216	7	177	4.60e-70	212
MS.gene50790.t1	MTR_2g030865	62.644	174	58	4	47	216	7	177	3.63e-68	207
MS.gene50790.t1	MTR_1g085500	46.262	214	107	3	5	216	6	213	5.69e-61	190
MS.gene50790.t1	MTR_1g085140	46.269	201	100	3	18	216	20	214	2.39e-54	173
MS.gene50790.t1	MTR_7g111240	47.716	197	95	3	22	216	20	210	8.34e-53	169
MS.gene50790.t1	MTR_7g111240	47.716	197	92	3	22	216	20	207	1.49e-51	166
MS.gene50790.t1	MTR_2g031300	53.488	172	54	4	47	215	7	155	1.72e-50	161
MS.gene50790.t1	MTR_5g036570	45.455	198	99	4	22	216	27	218	1.43e-48	159
MS.gene50790.t1	MTR_1g112200	41.500	200	102	5	19	216	20	206	3.77e-44	147
MS.gene50790.t1	MTR_1g060120	36.036	222	129	5	2	216	5	220	6.98e-41	139
MS.gene50790.t1	MTR_2g041550	40.845	213	108	5	4	214	7	203	1.79e-40	137
MS.gene50790.t1	MTR_2g041570	37.850	214	115	5	4	215	7	204	3.10e-38	132
MS.gene50790.t1	MTR_2g041580	38.028	213	114	5	4	214	7	203	3.38e-38	132
MS.gene50790.t1	MTR_8g007300	40.299	201	106	4	22	220	26	214	1.79e-36	127
MS.gene50790.t1	MTR_8g020750	40.404	198	97	5	1	191	1	184	2.92e-35	124
MS.gene50790.t1	MTR_8g020630	40.110	182	95	5	1	180	1	170	1.17e-33	120
MS.gene50790.t1	MTR_3g019710	40.500	200	104	6	1	198	1	187	1.65e-33	120
MS.gene50790.t1	MTR_8g020590	36.866	217	119	6	1	215	2	202	3.25e-33	119
MS.gene50790.t1	MTR_2g036120	37.736	212	115	6	1	207	1	200	5.24e-32	116
MS.gene50790.t1	MTR_8g020770	41.111	180	93	4	1	177	1	170	3.96e-31	114
MS.gene50790.t1	MTR_8g020650	35.321	218	125	6	1	216	1	204	4.69e-31	113
MS.gene50790.t1	MTR_8g020670	34.404	218	127	6	1	216	1	204	2.76e-30	111
MS.gene50790.t1	MTR_3g019650	38.119	202	105	7	1	198	1	186	6.13e-30	110
MS.gene50790.t1	MTR_3g019680	38.119	202	105	7	1	198	1	186	6.19e-30	110
MS.gene50790.t1	MTR_0284s0010	37.736	212	115	6	1	207	1	200	6.22e-30	110
MS.gene50790.t1	MTR_2g044040	37.778	180	98	5	1	178	1	168	1.52e-29	109
MS.gene50790.t1	MTR_2g086640	34.404	218	116	7	2	215	7	201	4.41e-29	108
MS.gene50790.t1	MTR_2g086620	43.182	132	68	3	85	215	77	202	1.36e-28	107
MS.gene50790.t1	MTR_2g045100	38.889	180	96	5	1	178	1	168	1.37e-28	107
MS.gene50790.t1	MTR_4g052770	34.862	218	114	7	3	215	9	203	1.65e-28	107
MS.gene50790.t1	MTR_4g052780	36.585	205	103	6	16	215	21	203	1.81e-28	107
MS.gene50790.t1	MTR_2g086630	42.424	132	69	3	85	215	77	202	4.56e-28	105
MS.gene50790.t1	MTR_3g096330	38.764	178	102	3	5	180	560	732	1.33e-27	110
MS.gene50790.t1	MTR_5g031460	35.071	211	122	5	1	207	1	200	1.60e-27	104
MS.gene50790.t1	MTR_8g020760	34.404	218	129	6	1	216	1	206	3.01e-26	101
MS.gene50790.t1	MTR_7g011340	35.849	212	119	6	1	207	1	200	1.89e-25	99.0
MS.gene50790.t1	MTR_4g010340	35.160	219	116	8	2	216	4	200	2.96e-25	98.6
MS.gene50790.t1	MTR_2g019780	32.727	220	131	7	1	216	1	207	1.13e-24	97.1
MS.gene50790.t1	MTR_8g020763	35.795	176	104	3	43	216	17	185	1.66e-24	95.9
MS.gene50790.t1	MTR_8g020610	33.333	216	126	7	1	214	1	200	4.01e-24	95.5
MS.gene50790.t1	MTR_3g073170	34.896	192	109	6	28	216	27	205	5.08e-24	95.5
MS.gene50790.t1	MTR_3g019810	33.981	206	113	9	1	203	107	292	1.82e-18	82.4
MS.gene50790.t1	MTR_2g030915	48.052	77	24	1	93	169	1	61	9.75e-18	75.9
MS.gene50790.t1	MTR_4g027415	35.714	154	85	5	1	152	1	142	1.12e-16	74.3
MS.gene50790.t1	MTR_2g072560	36.885	122	68	4	1	120	1	115	2.58e-13	65.5
MS.gene50790.t1	MTR_3g019610	38.393	112	60	4	1	110	1	105	4.19e-11	58.5

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene50790.t1	AT3G05950	64.602	226	71	5	4	222	5	228	1.23e-94	276
MS.gene50790.t1	AT5G39150	62.557	219	78	3	1	216	1	218	3.53e-92	270
MS.gene50790.t1	AT5G39180	62.557	219	78	3	1	216	1	218	7.92e-92	269
MS.gene50790.t1	AT5G39120	63.679	212	73	3	7	216	9	218	1.12e-91	268
MS.gene50790.t1	AT5G39110	63.208	212	75	2	7	216	9	219	4.68e-90	264
MS.gene50790.t1	AT5G39160	63.182	220	75	4	1	216	1	218	4.95e-90	264
MS.gene50790.t1	AT5G39190	63.182	220	75	4	1	216	1	218	9.13e-90	263
MS.gene50790.t1	AT5G39130	63.810	210	72	3	9	216	11	218	2.78e-89	262
MS.gene50790.t1	AT5G39160	60.909	220	76	4	1	216	1	214	3.15e-85	252
MS.gene50790.t1	AT4G14630	59.545	220	84	3	1	216	3	221	4.29e-85	252
MS.gene50790.t1	AT3G04200	59.722	216	83	4	1	214	6	219	1.40e-82	246
MS.gene50790.t1	AT5G38910	59.276	221	82	4	1	216	1	218	6.59e-79	236
MS.gene50790.t1	AT5G39190	57.339	218	69	3	1	216	1	196	1.11e-77	232
MS.gene50790.t1	AT5G38930	61.307	199	73	2	20	216	24	220	1.30e-77	233
MS.gene50790.t1	AT5G38940	60.406	197	74	2	22	216	26	220	1.30e-77	233
MS.gene50790.t1	AT5G38940	60.406	197	74	2	22	216	50	244	1.93e-77	233
MS.gene50790.t1	AT5G39160	56.881	218	70	3	1	216	1	196	2.94e-77	231
MS.gene50790.t1	AT5G38960	59.406	202	77	3	18	216	22	221	4.17e-77	231
MS.gene50790.t1	AT3G04170	55.238	210	87	4	8	215	12	216	8.65e-73	221
MS.gene50790.t1	AT3G04150	53.670	218	94	4	3	215	4	219	2.75e-72	219
MS.gene50790.t1	AT3G04190	55.446	202	86	3	15	214	19	218	3.18e-72	219
MS.gene50790.t1	AT3G04150	50.870	230	95	4	3	215	4	232	1.86e-70	215
MS.gene50790.t1	AT3G04180	53.960	202	89	3	15	214	19	218	3.16e-69	211
MS.gene50790.t1	AT1G02335	43.721	215	113	3	4	216	6	214	8.45e-57	180
MS.gene50790.t1	AT3G62020	46.262	214	105	5	6	216	8	214	1.21e-55	177
MS.gene50790.t1	AT5G38910	48.416	221	69	4	1	216	1	181	2.59e-55	175
MS.gene50790.t1	AT3G05930	47.549	204	97	4	3	203	5	201	1.22e-53	172
MS.gene50790.t1	AT1G09560	45.050	202	103	3	17	216	19	214	1.66e-53	171
MS.gene50790.t1	AT5G26700	49.457	184	78	5	26	205	25	197	3.25e-51	165
MS.gene50790.t1	AT1G18970	45.274	201	100	4	18	216	25	217	6.85e-50	162
MS.gene50790.t1	AT1G18980	45.771	201	99	4	18	216	25	217	1.20e-48	159
MS.gene50790.t1	AT3G62020	46.961	181	89	3	39	216	9	185	5.28e-48	156
MS.gene50790.t1	AT1G10460	41.709	199	107	5	22	215	19	213	5.49e-45	149
MS.gene50790.t1	AT3G10080	39.409	203	113	5	18	216	22	218	1.69e-43	146
MS.gene50790.t1	AT3G10080	39.409	203	113	5	18	216	93	289	9.21e-43	146
MS.gene50790.t1	AT5G61750	41.398	186	103	2	4	187	1	182	1.98e-40	137
MS.gene50790.t1	AT5G20630	40.758	211	112	6	1	209	1	200	3.42e-40	137
MS.gene50790.t1	AT1G72610	40.314	191	104	6	26	214	19	201	7.86e-33	118
MS.gene50790.t1	AT1G74820	39.175	194	108	4	25	216	39	224	7.96e-33	118
MS.gene50790.t1	AT5G38950	54.167	72	33	0	146	217	2	73	1.30e-18	78.2
MS.gene50790.t1	AT5G39100	72.000	50	14	0	7	56	9	58	7.86e-18	74.7

Find 57 sgRNAs with CRISPR-Local

Find 129 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
TATATACATACCACCATCTT+TGG	0.255130	4.1:-80373233	None:intergenic
CCTTGTTAGCATCTTGGCTT+TGG	0.311083	4.1:+80373144	MS.gene50790:CDS
TTGAGAGCCTAGTGCGTTAG+AGG	0.314204	4.1:-80374385	None:intergenic
CTTATCCACTTGAAAAGCTT+TGG	0.335788	4.1:-80374784	None:intergenic
CAACACACTTGGGATATCTT+TGG	0.340651	4.1:+80374443	MS.gene50790:CDS
ACCATCTTTGGGGTCTTTGA+TGG	0.343346	4.1:-80373221	None:intergenic
TGAAAATGAATAAGACCAAT+TGG	0.356438	4.1:-80374639	None:intergenic
GACTGCCTTCAAGTACTATA+AGG	0.359669	4.1:-80374530	None:intergenic
ACGATTGTTGTTGTCTTGAT+TGG	0.375547	4.1:-80374574	None:intergenic
ATACTTCCTTGTTAGCATCT+TGG	0.401215	4.1:+80373138	MS.gene50790:CDS
TTCTTCAAACATGTTGAAGC+TGG	0.402098	4.1:+80374357	MS.gene50790:CDS
ATATACATACCACCATCTTT+GGG	0.405165	4.1:-80373232	None:intergenic
GGCAACGCTGTTGCTATTGC+TGG	0.408860	4.1:+80374678	MS.gene50790:CDS
AATTTGCAGTGTTTGTGAAC+GGG	0.408992	4.1:+80374295	MS.gene50790:intron
ATTATCTTCAAAAGCAGTCT+TGG	0.442184	4.1:+80374817	MS.gene50790:CDS
CAAAAGTCTTGGAGAGGGCT+AGG	0.443544	4.1:-80373193	None:intergenic
GTCACTGTAGACCAACTATT+CGG	0.446134	4.1:+80374417	MS.gene50790:CDS
GATGTGTTTGTGTTCCCAAT+TGG	0.446317	4.1:+80374624	MS.gene50790:CDS
TTTGCAACGGTGATAACTCC+TGG	0.470922	4.1:-80374717	None:intergenic
TGATGGCAACGCAAAAGTCT+TGG	0.475943	4.1:-80373204	None:intergenic
ATAAGGATTTCCGTTCCTCT+AGG	0.478305	4.1:-80374513	None:intergenic
GAAATCCTTATAGTACTTGA+AGG	0.481512	4.1:+80374525	MS.gene50790:CDS
TCTTCAGCTTTAACTAGCGC+GGG	0.484814	4.1:-80374333	None:intergenic
CTTGAAGGCAGTCTTTATGT+TGG	0.489113	4.1:+80374540	MS.gene50790:CDS
CTCTAGGGTGAATGTGAGGT+GGG	0.498933	4.1:-80374497	None:intergenic
TCTTCAAACATGTTGAAGCT+GGG	0.501315	4.1:+80374358	MS.gene50790:CDS
GAAAATGAATAAGACCAATT+GGG	0.510497	4.1:-80374638	None:intergenic
AGAACTTCGTCGGAAATAAG+AGG	0.511108	4.1:-80374759	None:intergenic
CTATTCGGACTCAACACACT+TGG	0.521532	4.1:+80374432	MS.gene50790:CDS
TGAGGTGGGTTTAAACCCTT+AGG	0.539104	4.1:-80374483	None:intergenic
TTTCAACTGAATGTGGGCTA+TGG	0.539971	4.1:+80374657	MS.gene50790:CDS
GTGTGTTGAGTCCGAATAGT+TGG	0.540274	4.1:-80374428	None:intergenic
ATCTTCAGCTTTAACTAGCG+CGG	0.543736	4.1:-80374334	None:intergenic
TAAGGATTTCCGTTCCTCTA+GGG	0.546102	4.1:-80374512	None:intergenic
TAATTTGCAGTGTTTGTGAA+CGG	0.551349	4.1:+80374294	MS.gene50790:intron
GCCATCAAAGACCCCAAAGA+TGG	0.552100	4.1:+80373220	MS.gene50790:CDS
AGCTTTGGTAAGAACTTCGT+CGG	0.555884	4.1:-80374769	None:intergenic
CCAAAGCCAAGATGCTAACA+AGG	0.556137	4.1:-80373144	None:intergenic
CCTCTAGGGTGAATGTGAGG+TGG	0.565620	4.1:-80374498	None:intergenic
AAAAGTCTTGGAGAGGGCTA+GGG	0.571621	4.1:-80373192	None:intergenic
GGGAATGCCTCTAACGCACT+AGG	0.573570	4.1:+80374378	MS.gene50790:CDS
GGACTTAGCAGTCAAAATCC+AGG	0.578792	4.1:+80374699	MS.gene50790:CDS
TATTCGGACTCAACACACTT+GGG	0.584132	4.1:+80374433	MS.gene50790:CDS
TTTAAACAAAGCATTTGCAA+CGG	0.590900	4.1:-80374730	None:intergenic
TTCACCAAAGTTCTCAACAA+GGG	0.595598	4.1:+80374600	MS.gene50790:CDS
CTTCACCAAAGTTCTCAACA+AGG	0.598137	4.1:+80374599	MS.gene50790:CDS
TCACCAAAGTTCTCAACAAG+GGG	0.602098	4.1:+80374601	MS.gene50790:CDS
AGGGCTAGGGTCATAAGCAA+AGG	0.622370	4.1:-80373179	None:intergenic
TCACATTCACCCTAGAGGAA+CGG	0.635178	4.1:+80374503	MS.gene50790:CDS
ATCAAAGACCCCAAAGATGG+TGG	0.635231	4.1:+80373223	MS.gene50790:CDS
TATACATACCACCATCTTTG+GGG	0.639620	4.1:-80373231	None:intergenic
CAACGCAAAAGTCTTGGAGA+GGG	0.643972	4.1:-80373198	None:intergenic
GCAACGCAAAAGTCTTGGAG+AGG	0.646350	4.1:-80373199	None:intergenic
CTTCAGCTTTAACTAGCGCG+GGG	0.662073	4.1:-80374332	None:intergenic
GTTCCTCTAGGGTGAATGTG+AGG	0.681575	4.1:-80374501	None:intergenic
CCACCTCACATTCACCCTAG+AGG	0.685266	4.1:+80374498	MS.gene50790:CDS
CACCAAAGTTCTCAACAAGG+GGG	0.737020	4.1:+80374602	MS.gene50790:CDS

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!	AAAAAAAAAATACATATTGT+AGG	-	chr4.1:80374057-80374076	None:intergenic	10.0%
!!	ATATTTAGTATTATAGTATA+TGG	+	chr4.1:80374087-80374106	MS.gene50790:intron	10.0%
!!	ATTAAAATGATGATTAAATT+TGG	-	chr4.1:80373600-80373619	None:intergenic	10.0%
!!!	TAATTTTTTACTAAATAATG+GGG	-	chr4.1:80373448-80373467	None:intergenic	10.0%
!!	ACCTTATAGTAATATATAAA+TGG	-	chr4.1:80374014-80374033	None:intergenic	15.0%
!!	ATACTAAAATTAATAAGTAG+TGG	-	chr4.1:80373396-80373415	None:intergenic	15.0%
!!	ATTATTTGTATGTACTTAAT+AGG	-	chr4.1:80373860-80373879	None:intergenic	15.0%
!!	TAAATGAAATATGAATTAGT+TGG	-	chr4.1:80373501-80373520	None:intergenic	15.0%
!!	TCCATTTATATATTACTATA+AGG	+	chr4.1:80374010-80374029	MS.gene50790:intron	15.0%
!!!	AAATATAGAATCTTTTGTTT+TGG	+	chr4.1:80374192-80374211	MS.gene50790:intron	15.0%
!!!	AATTTTTTACTAAATAATGG+GGG	-	chr4.1:80373447-80373466	None:intergenic	15.0%
!!!	TTATTTTACTATAGTAAAGT+TGG	+	chr4.1:80373474-80373493	MS.gene50790:intron	15.0%
!!	AAAGAAAATTTATGTAGAGT+CGG	-	chr4.1:80374150-80374169	None:intergenic	20.0%
!!	CCTATTTAACTAAAAAAGTT+AGG	+	chr4.1:80373793-80373812	MS.gene50790:intron	20.0%
!!	CCTGTTAAACAAAAAAAAAT+GGG	-	chr4.1:80373751-80373770	None:intergenic	20.0%
!!	TAATCATGACTTAAAAGTTA+AGG	-	chr4.1:80373261-80373280	None:intergenic	20.0%
!!!	AATAGGCTTCTAAAAAATAT+TGG	-	chr4.1:80373779-80373798	None:intergenic	20.0%
!!!	CCATTTTTTTTTGTTTAACA+GGG	+	chr4.1:80373749-80373768	MS.gene50790:intron	20.0%
!!!	CCTAACTTTTTTAGTTAAAT+AGG	-	chr4.1:80373796-80373815	None:intergenic	20.0%
!	ACATTTCAATAAATACCAAG+TGG	-	chr4.1:80373940-80373959	None:intergenic	25.0%
!	CAAAAAGTCTAATATTTGCA+GGG	-	chr4.1:80373322-80373341	None:intergenic	25.0%
!	CCCTGTTAAACAAAAAAAAA+TGG	-	chr4.1:80373752-80373771	None:intergenic	25.0%
!	CTAAAATTAATAAGTAGTGG+AGG	-	chr4.1:80373393-80373412	None:intergenic	25.0%
!	GAAAATGAATAAGACCAATT+GGG	-	chr4.1:80374641-80374660	None:intergenic	25.0%
!	TGAAAATGAATAAGACCAAT+TGG	-	chr4.1:80374642-80374661	None:intergenic	25.0%
!!	AACCATAGATAAAGTCTTTT+AGG	+	chr4.1:80373821-80373840	MS.gene50790:intron	25.0%
!!	ATTCATTTTCAACTGAATGT+GGG	+	chr4.1:80374651-80374670	MS.gene50790:CDS	25.0%
!!	TATTCATTTTCAACTGAATG+TGG	+	chr4.1:80374650-80374669	MS.gene50790:CDS	25.0%
!!	TTTAAACAAAGCATTTGCAA+CGG	-	chr4.1:80374733-80374752	None:intergenic	25.0%
!!!	CCCATTTTTTTTTGTTTAAC+AGG	+	chr4.1:80373748-80373767	MS.gene50790:intron	25.0%
	AAGACTTTATCTATGGTTTG+TGG	-	chr4.1:80373819-80373838	None:intergenic	30.0%
	AGCCAGAAATATTAGATTGT+GGG	-	chr4.1:80374121-80374140	None:intergenic	30.0%
	ATATACATACCACCATCTTT+GGG	-	chr4.1:80373235-80373254	None:intergenic	30.0%
	ATTATCTTCAAAAGCAGTCT+TGG	+	chr4.1:80374817-80374836	MS.gene50790:CDS	30.0%
	CCAAAAAGTCTAATATTTGC+AGG	-	chr4.1:80373323-80373342	None:intergenic	30.0%
	GAAATCCTTATAGTACTTGA+AGG	+	chr4.1:80374525-80374544	MS.gene50790:CDS	30.0%
	TATATACATACCACCATCTT+TGG	-	chr4.1:80373236-80373255	None:intergenic	30.0%
!	CCTGCAAATATTAGACTTTT+TGG	+	chr4.1:80373320-80373339	MS.gene50790:intron	30.0%
!	TAATTTGCAGTGTTTGTGAA+CGG	+	chr4.1:80374294-80374313	MS.gene50790:intron	30.0%
!!!	GAATCTTTTGTTTTGGTTCA+CGG	+	chr4.1:80374199-80374218	MS.gene50790:intron	30.0%
	AATTTGCAGTGTTTGTGAAC+GGG	+	chr4.1:80374295-80374314	MS.gene50790:intron	35.0%
	ATACTTCCTTGTTAGCATCT+TGG	+	chr4.1:80373138-80373157	MS.gene50790:CDS	35.0%
	ATGTAAGCTAGGTTAAAGGT+TGG	-	chr4.1:80373720-80373739	None:intergenic	35.0%
	CCAGAAATATTAGATTGTGG+GGG	-	chr4.1:80374119-80374138	None:intergenic	35.0%
	CCTAATGTAAGCTAGGTTAA+AGG	-	chr4.1:80373724-80373743	None:intergenic	35.0%
	CCTTTAACCTAGCTTACATT+AGG	+	chr4.1:80373721-80373740	MS.gene50790:intron	35.0%
	CTTATCCACTTGAAAAGCTT+TGG	-	chr4.1:80374787-80374806	None:intergenic	35.0%
	GAAAATTTATGTAGAGTCGG+TGG	-	chr4.1:80374147-80374166	None:intergenic	35.0%
	GAGCCAGAAATATTAGATTG+TGG	-	chr4.1:80374122-80374141	None:intergenic	35.0%
	GCCAGAAATATTAGATTGTG+GGG	-	chr4.1:80374120-80374139	None:intergenic	35.0%
	GGCCTAAAAGACTTTATCTA+TGG	-	chr4.1:80373826-80373845	None:intergenic	35.0%
	TATACATACCACCATCTTTG+GGG	-	chr4.1:80373234-80373253	None:intergenic	35.0%
	TCTTCAAACATGTTGAAGCT+GGG	+	chr4.1:80374358-80374377	MS.gene50790:CDS	35.0%
	TGTAAGCTAGGTTAAAGGTT+GGG	-	chr4.1:80373719-80373738	None:intergenic	35.0%
	TTCACCAAAGTTCTCAACAA+GGG	+	chr4.1:80374600-80374619	MS.gene50790:CDS	35.0%
	TTCTTCAAACATGTTGAAGC+TGG	+	chr4.1:80374357-80374376	MS.gene50790:CDS	35.0%
!	AAATAATGGGGGCATAAAGT+TGG	-	chr4.1:80373436-80373455	None:intergenic	35.0%
!	ACGATTGTTGTTGTCTTGAT+TGG	-	chr4.1:80374577-80374596	None:intergenic	35.0%
!	TAAAGTCTTTTAGGCCAACA+AGG	+	chr4.1:80373830-80373849	MS.gene50790:intron	35.0%
!!	TCTTACCAAAGCTTTTCAAG+TGG	+	chr4.1:80374779-80374798	MS.gene50790:CDS	35.0%
!!!	ATTTTAGCAGTTTCTAGCCA+TGG	-	chr4.1:80374245-80374264	None:intergenic	35.0%
!!!	CTTTTTGGTTTTACTCCATG+TGG	+	chr4.1:80373335-80373354	MS.gene50790:intron	35.0%
	AATTTATGTAGAGTCGGTGG+CGG	-	chr4.1:80374144-80374163	None:intergenic	40.0%
	ACTTAATAGGCCAACCTTGT+TGG	-	chr4.1:80373847-80373866	None:intergenic	40.0%
	AGAACTTCGTCGGAAATAAG+AGG	-	chr4.1:80374762-80374781	None:intergenic	40.0%
	ATAAGGATTTCCGTTCCTCT+AGG	-	chr4.1:80374516-80374535	None:intergenic	40.0%
	CAACACACTTGGGATATCTT+TGG	+	chr4.1:80374443-80374462	MS.gene50790:CDS	40.0%
	CCCCCACAATCTAATATTTC+TGG	+	chr4.1:80374116-80374135	MS.gene50790:intron	40.0%
	CTTCACCAAAGTTCTCAACA+AGG	+	chr4.1:80374599-80374618	MS.gene50790:CDS	40.0%
	CTTGAAGGCAGTCTTTATGT+TGG	+	chr4.1:80374540-80374559	MS.gene50790:CDS	40.0%
	GACTGCCTTCAAGTACTATA+AGG	-	chr4.1:80374533-80374552	None:intergenic	40.0%
	GATGTGTTTGTGTTCCCAAT+TGG	+	chr4.1:80374624-80374643	MS.gene50790:CDS	40.0%
	GTCACTGTAGACCAACTATT+CGG	+	chr4.1:80374417-80374436	MS.gene50790:CDS	40.0%
	TAAGGATTTCCGTTCCTCTA+GGG	-	chr4.1:80374515-80374534	None:intergenic	40.0%
	TATTCGGACTCAACACACTT+GGG	+	chr4.1:80374433-80374452	MS.gene50790:CDS	40.0%
	TCACCAAAGTTCTCAACAAG+GGG	+	chr4.1:80374601-80374620	MS.gene50790:CDS	40.0%
!	AGCTTTGGTAAGAACTTCGT+CGG	-	chr4.1:80374772-80374791	None:intergenic	40.0%
!	ATCTTCAGCTTTAACTAGCG+CGG	-	chr4.1:80374337-80374356	None:intergenic	40.0%
!	TTTCAACTGAATGTGGGCTA+TGG	+	chr4.1:80374657-80374676	MS.gene50790:CDS	40.0%
!!	GAAGTCACTGACTTGAGAAT+TGG	-	chr4.1:80373918-80373937	None:intergenic	40.0%
!!!	TTTGGTTTTACTCCATGTGG+CGG	+	chr4.1:80373338-80373357	MS.gene50790:intron	40.0%
	AAAAGTCTTGGAGAGGGCTA+GGG	-	chr4.1:80373195-80373214	None:intergenic	45.0%
	AGCTACATGTACCCTTGTGT+GGG	+	chr4.1:80373361-80373380	MS.gene50790:intron	45.0%
	ATCAAAGACCCCAAAGATGG+TGG	+	chr4.1:80373223-80373242	MS.gene50790:CDS	45.0%
	ATCCCCCTTGTTGAGAACTT+TGG	-	chr4.1:80374607-80374626	None:intergenic	45.0%
	CAACGCAAAAGTCTTGGAGA+GGG	-	chr4.1:80373201-80373220	None:intergenic	45.0%
	CACCAAAGTTCTCAACAAGG+GGG	+	chr4.1:80374602-80374621	MS.gene50790:CDS	45.0%
	CCAAAGCCAAGATGCTAACA+AGG	-	chr4.1:80373147-80373166	None:intergenic	45.0%
	CCTTGTTAGCATCTTGGCTT+TGG	+	chr4.1:80373144-80373163	MS.gene50790:CDS	45.0%
	CTATTCGGACTCAACACACT+TGG	+	chr4.1:80374432-80374451	MS.gene50790:CDS	45.0%
	GGAATAGGCTGAGTCAAGTT+AGG	-	chr4.1:80373891-80373910	None:intergenic	45.0%
	GGACTTAGCAGTCAAAATCC+AGG	+	chr4.1:80374699-80374718	MS.gene50790:CDS	45.0%
	GTGTGTTGAGTCCGAATAGT+TGG	-	chr4.1:80374431-80374450	None:intergenic	45.0%
	TCAAGTCAGTGACTTCCACT+TGG	+	chr4.1:80373922-80373941	MS.gene50790:intron	45.0%
	TCACATTCACCCTAGAGGAA+CGG	+	chr4.1:80374503-80374522	MS.gene50790:CDS	45.0%
	TGATGGCAACGCAAAAGTCT+TGG	-	chr4.1:80373207-80373226	None:intergenic	45.0%
	TTGAGAATTGGAGCGGGAAT+AGG	-	chr4.1:80373906-80373925	None:intergenic	45.0%
	TTTGCAACGGTGATAACTCC+TGG	-	chr4.1:80374720-80374739	None:intergenic	45.0%
!	GTCTTTTAGGCCAACAAGGT+TGG	+	chr4.1:80373834-80373853	MS.gene50790:intron	45.0%
!	TCTTCAGCTTTAACTAGCGC+GGG	-	chr4.1:80374336-80374355	None:intergenic	45.0%
!	TGAGGTGGGTTTAAACCCTT+AGG	-	chr4.1:80374486-80374505	None:intergenic	45.0%
!!	ACCATCTTTGGGGTCTTTGA+TGG	-	chr4.1:80373224-80373243	None:intergenic	45.0%
!!	ACTGACTTGAGAATTGGAGC+GGG	-	chr4.1:80373912-80373931	None:intergenic	45.0%
!!	CACTGACTTGAGAATTGGAG+CGG	-	chr4.1:80373913-80373932	None:intergenic	45.0%
!!!	TTTTGGTTCACGGTGTTTCC+TGG	+	chr4.1:80374209-80374228	MS.gene50790:intron	45.0%
!!!	TTAATTTTTTACTAAATAAT+GGG	-	chr4.1:80373449-80373468	None:intergenic	5.0%
!!!	TTTAATTTTTTACTAAATAA+TGG	-	chr4.1:80373450-80373469	None:intergenic	5.0%
	AGGGCTAGGGTCATAAGCAA+AGG	-	chr4.1:80373182-80373201	None:intergenic	50.0%
	CAAAAGTCTTGGAGAGGGCT+AGG	-	chr4.1:80373196-80373215	None:intergenic	50.0%
	CGGTGTTTCCTGGTTTAGCT+AGG	+	chr4.1:80374219-80374238	MS.gene50790:intron	50.0%
	GAGCTACATGTACCCTTGTG+TGG	+	chr4.1:80373360-80373379	MS.gene50790:intron	50.0%
	GCAACGCAAAAGTCTTGGAG+AGG	-	chr4.1:80373202-80373221	None:intergenic	50.0%
	GCCATCAAAGACCCCAAAGA+TGG	+	chr4.1:80373220-80373239	MS.gene50790:CDS	50.0%
	GGGCTCACCTAATGTAAGCT+AGG	-	chr4.1:80373731-80373750	None:intergenic	50.0%
	TTCCTGGTTTAGCTAGGCCA+TGG	+	chr4.1:80374225-80374244	MS.gene50790:intron	50.0%
	TTGAGAGCCTAGTGCGTTAG+AGG	-	chr4.1:80374388-80374407	None:intergenic	50.0%
!	CTTCAGCTTTAACTAGCGCG+GGG	-	chr4.1:80374335-80374354	None:intergenic	50.0%
!!	CTCTAGGGTGAATGTGAGGT+GGG	-	chr4.1:80374500-80374519	None:intergenic	50.0%
!!	GTTCCTCTAGGGTGAATGTG+AGG	-	chr4.1:80374504-80374523	None:intergenic	50.0%
!!!	CGCGTTGATTTTGCGCCTAA+GGG	+	chr4.1:80374468-80374487	MS.gene50790:CDS	50.0%
!!!	TCGCGTTGATTTTGCGCCTA+AGG	+	chr4.1:80374467-80374486	MS.gene50790:CDS	50.0%
	AGCCATGGCCTAGCTAAACC+AGG	-	chr4.1:80374230-80374249	None:intergenic	55.0%
	CCACCTCACATTCACCCTAG+AGG	+	chr4.1:80374498-80374517	MS.gene50790:CDS	55.0%
	GGGAATGCCTCTAACGCACT+AGG	+	chr4.1:80374378-80374397	MS.gene50790:CDS	55.0%
	GTACATGTAGCTCCGCCACA+TGG	-	chr4.1:80373353-80373372	None:intergenic	55.0%
!	GGCAACGCTGTTGCTATTGC+TGG	+	chr4.1:80374678-80374697	MS.gene50790:CDS	55.0%
!!	CCTCTAGGGTGAATGTGAGG+TGG	-	chr4.1:80374501-80374520	None:intergenic	55.0%
!	GGAGGCACATGCCCACACAA+GGG	-	chr4.1:80373375-80373394	None:intergenic	60.0%
!	TGGAGGCACATGCCCACACA+AGG	-	chr4.1:80373376-80373395	None:intergenic	60.0%

Chromosome	Type	Strat	End	Strand	Name
chr4.1	gene	80373127	80374854	80373127	ID=MS.gene50790
chr4.1	mRNA	80373127	80374854	80373127	ID=MS.gene50790.t1;Parent=MS.gene50790
chr4.1	exon	80373127	80373244	80373127	ID=MS.gene50790.t1.exon1;Parent=MS.gene50790.t1
chr4.1	CDS	80373127	80373244	80373127	ID=cds.MS.gene50790.t1;Parent=MS.gene50790.t1
chr4.1	exon	80374304	80374854	80374304	ID=MS.gene50790.t1.exon2;Parent=MS.gene50790.t1
chr4.1	CDS	80374304	80374854	80374304	ID=cds.MS.gene50790.t1;Parent=MS.gene50790.t1

Gene Sequence

>MS.gene50790

ATGAAGATTATATACTTCCTTGTTAGCATCTTGGCTTTGGCATCATCTGTTGCCTTTGCTTATGACCCTAGCCCTCTCCAAGACTTTTGCGTTGCCATCAAAGACCCCAAAGATGGTGGTATGTATATATTCCTTAACTTTTAAGTCATGATTAATTACTACTCAATTTTTAAGCTTAAATATGCAAATGTTCCCTGCAAATATTAGACTTTTTGGTTTTACTCCATGTGGCGGAGCTACATGTACCCTTGTGTGGGCATGTGCCTCCACTACTTATTAATTTTAGTATATAACATTATTGTTAAGCCAACTTTATGCCCCCATTATTTAGTAAAAAATTAAAAAATTTATTTTACTATAGTAAAGTTGGTCCAACTAATTCATATTTCATTTATTGATAAATTGATTCATTAATCATAACATATATTTCTTTTGTGCTATAAGTGATTCATTTGTAATAAAAATTTGTTCCAAATTTAATCATCATTTTAATTTTCAATGCAATCATAAACACTTTTTTATTTATTTATTAATATACACTAATAGTTGCATTATTTGCATTTTGCAAGTACATGTGACAACACGTCAGCCCAACCTTTAACCTAGCTTACATTAGGTGAGCCCATTTTTTTTTGTTTAACAGGGAATACCAATATTTTTTAGAAGCCTATTTAACTAAAAAAGTTAGGCCACAAACCATAGATAAAGTCTTTTAGGCCAACAAGGTTGGCCTATTAAGTACATACAAATAATTTGCAAAACCTAACTTGACTCAGCCTATTCCCGCTCCAATTCTCAAGTCAGTGACTTCCACTTGGTATTTATTGAAATGTAAATAAATTAATATTTGATAAGAGTAATTTTGAAAAAGTATTATTTCACTTCCATTTATATATTACTATAAGGTTATTATTTTACTTTCATCTTCCTACAATATGTATTTTTTTTTTGTAAAATAACATATTTAGTATTATAGTATATGGATATCGCCCCCACAATCTAATATTTCTGGCTCCGCCACCGACTCTACATAAATTTTCTTTTTTTGTTTGTTTTAGTCTTTGTAAATATAGAATCTTTTGTTTTGGTTCACGGTGTTTCCTGGTTTAGCTAGGCCATGGCTAGAAACTGCTAAAATTTCTTTGATATAACAAAACTATGATGTAATAATTTGCAGTGTTTGTGAACGGGAAATTCTGTAAAGACCCCGCGCTAGTTAAAGCTGAAGATTTCTTCAAACATGTTGAAGCTGGGAATGCCTCTAACGCACTAGGCTCTCAAGTAACTCAAGTCACTGTAGACCAACTATTCGGACTCAACACACTTGGGATATCTTTGGCTCGCGTTGATTTTGCGCCTAAGGGTTTAAACCCACCTCACATTCACCCTAGAGGAACGGAAATCCTTATAGTACTTGAAGGCAGTCTTTATGTTGGATTTGTCACATCCAATCAAGACAACAACAATCGTCTCTTCACCAAAGTTCTCAACAAGGGGGATGTGTTTGTGTTCCCAATTGGTCTTATTCATTTTCAACTGAATGTGGGCTATGGCAACGCTGTTGCTATTGCTGGACTTAGCAGTCAAAATCCAGGAGTTATCACCGTTGCAAATGCTTTGTTTAAATCTGATCCTCTTATTTCCGACGAAGTTCTTACCAAAGCTTTTCAAGTGGATAAGAGCATAATTGATTATCTTCAAAAGCAGTCTTGGTATGACAACAACTAG

Protein sequence

>MS.gene50790.t1

MKIIYFLVSILALASSVAFAYDPSPLQDFCVAIKDPKDGVFVNGKFCKDPALVKAEDFFKHVEAGNASNALGSQVTQVTVDQLFGLNTLGISLARVDFAPKGLNPPHIHPRGTEILIVLEGSLYVGFVTSNQDNNNRLFTKVLNKGDVFVFPIGLIHFQLNVGYGNAVAIAGLSSQNPGVITVANALFKSDPLISDEVLTKAFQVDKSIIDYLQKQSWYDNN