AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene96244

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene96244.t1 MTR_2g019250 98.643 221 3 0 1 221 1 221 2.61e-160 442
MS.gene96244.t1 MTR_5g046410 98.190 221 4 0 1 221 1 221 3.15e-160 442
MS.gene96244.t1 MTR_5g046430 98.190 221 4 0 1 221 1 221 3.15e-160 442
MS.gene96244.t1 MTR_4g017030 98.190 221 4 0 1 221 1 221 3.15e-160 442
MS.gene96244.t1 MTR_4g017050 97.738 221 5 0 1 221 1 221 1.25e-159 440
MS.gene96244.t1 MTR_4g017040 96.833 221 7 0 1 221 1 221 6.03e-158 436
MS.gene96244.t1 MTR_1g079490 79.279 222 45 1 1 221 1 222 2.70e-129 363
MS.gene96244.t1 MTR_6g005340 77.523 218 47 2 4 221 5 220 2.38e-118 336
MS.gene96244.t1 MTR_6g005360 75.566 221 53 1 1 221 1 220 2.54e-118 336
MS.gene96244.t1 MTR_6g005330 77.027 222 48 3 1 221 1 220 3.69e-118 335
MS.gene96244.t1 MTR_6g005310 77.419 217 47 2 4 220 5 219 8.39e-118 334
MS.gene96244.t1 MTR_6g005350 63.927 219 76 3 3 221 4 219 9.92e-91 266
MS.gene96244.t1 MTR_6g005380 61.538 208 80 0 1 208 1 208 4.75e-88 259
MS.gene96244.t1 MTR_1g023770 58.986 217 78 3 1 215 1 208 4.38e-81 241
MS.gene96244.t1 MTR_2g030855 60.000 200 70 4 19 215 19 211 8.06e-78 233
MS.gene96244.t1 MTR_2g031270 57.534 219 82 5 1 215 1 212 9.44e-74 223
MS.gene96244.t1 MTR_2g030895 63.584 173 57 4 47 215 7 177 2.25e-71 215
MS.gene96244.t1 MTR_2g030865 63.006 173 58 4 47 215 7 177 1.54e-69 211
MS.gene96244.t1 MTR_1g085500 46.948 213 106 3 5 215 6 213 7.61e-61 190
MS.gene96244.t1 MTR_1g085140 46.500 200 100 3 18 215 20 214 1.06e-53 172
MS.gene96244.t1 MTR_7g111240 47.959 196 95 3 22 215 20 210 4.43e-52 167
MS.gene96244.t1 MTR_2g031300 53.801 171 54 4 47 214 7 155 1.42e-51 164
MS.gene96244.t1 MTR_7g111240 47.959 196 92 3 22 215 20 207 1.12e-50 164
MS.gene96244.t1 MTR_5g036570 44.670 197 101 4 22 215 27 218 9.99e-49 159
MS.gene96244.t1 MTR_1g112200 41.346 208 90 7 19 215 20 206 1.06e-42 143
MS.gene96244.t1 MTR_2g041550 44.149 188 96 4 28 213 23 203 1.24e-41 140
MS.gene96244.t1 MTR_1g060120 37.104 221 127 5 2 215 5 220 3.50e-41 140
MS.gene96244.t1 MTR_2g041570 37.559 213 116 5 4 214 7 204 8.18e-38 130
MS.gene96244.t1 MTR_2g041580 37.736 212 115 5 4 213 7 203 9.51e-38 130
MS.gene96244.t1 MTR_8g007300 38.532 218 118 5 4 219 11 214 3.14e-35 124
MS.gene96244.t1 MTR_8g020750 40.609 197 97 5 1 190 1 184 1.16e-34 122
MS.gene96244.t1 MTR_8g020590 39.303 201 113 5 16 214 9 202 3.78e-34 121
MS.gene96244.t1 MTR_8g020630 39.227 181 97 5 1 179 1 170 2.18e-32 117
MS.gene96244.t1 MTR_3g019710 38.860 193 108 5 7 197 3 187 2.25e-32 117
MS.gene96244.t1 MTR_8g020770 41.341 179 93 4 1 176 1 170 1.81e-30 112
MS.gene96244.t1 MTR_2g036120 36.967 211 117 6 1 206 1 200 2.31e-30 111
MS.gene96244.t1 MTR_8g020650 35.417 192 113 5 26 215 22 204 1.60e-29 109
MS.gene96244.t1 MTR_8g020670 33.641 217 129 6 1 215 1 204 1.54e-28 107
MS.gene96244.t1 MTR_3g019650 38.636 176 98 5 24 197 19 186 1.56e-28 107
MS.gene96244.t1 MTR_0284s0010 37.441 211 116 6 1 206 1 200 2.02e-28 106
MS.gene96244.t1 MTR_2g045100 39.106 179 96 5 1 177 1 168 2.36e-28 106
MS.gene96244.t1 MTR_2g044040 37.430 179 99 5 1 177 1 168 2.99e-28 106
MS.gene96244.t1 MTR_3g019680 36.816 201 108 7 1 197 1 186 4.10e-28 105
MS.gene96244.t1 MTR_2g086640 33.180 217 119 7 2 214 7 201 5.90e-28 105
MS.gene96244.t1 MTR_2g086620 41.985 131 70 3 85 214 77 202 3.93e-27 103
MS.gene96244.t1 MTR_4g052770 34.562 217 115 7 3 214 9 203 4.67e-27 103
MS.gene96244.t1 MTR_4g052780 36.000 200 102 6 20 214 25 203 1.00e-26 102
MS.gene96244.t1 MTR_3g096330 38.202 178 104 3 4 179 559 732 1.16e-26 107
MS.gene96244.t1 MTR_2g086630 41.221 131 71 3 85 214 77 202 1.24e-26 102
MS.gene96244.t1 MTR_5g031460 33.810 210 125 5 1 206 1 200 5.28e-26 100
MS.gene96244.t1 MTR_8g020760 34.562 217 129 6 1 215 1 206 2.15e-25 99.0
MS.gene96244.t1 MTR_8g020610 33.493 209 128 6 7 213 1 200 4.20e-25 98.2
MS.gene96244.t1 MTR_4g010340 35.780 218 115 8 2 215 4 200 1.52e-24 96.7
MS.gene96244.t1 MTR_7g011340 36.559 186 106 5 26 206 22 200 9.72e-24 94.4
MS.gene96244.t1 MTR_8g020763 36.686 169 98 3 43 206 17 181 1.56e-23 93.6
MS.gene96244.t1 MTR_2g019780 31.963 219 133 7 1 215 1 207 8.36e-23 92.0
MS.gene96244.t1 MTR_3g073170 34.946 186 105 6 27 206 26 201 2.39e-22 90.9
MS.gene96244.t1 MTR_3g019810 34.634 205 112 9 1 202 107 292 2.78e-19 84.7
MS.gene96244.t1 MTR_2g030915 50.000 76 23 1 93 168 1 61 1.14e-17 75.5
MS.gene96244.t1 MTR_4g027415 37.500 128 71 4 26 151 22 142 7.27e-16 72.0
MS.gene96244.t1 MTR_2g072560 36.885 122 68 4 1 120 1 115 1.49e-12 63.2
MS.gene96244.t1 MTR_3g019610 38.393 112 60 4 1 110 1 105 8.62e-12 60.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene96244.t1 AT3G05950 65.778 225 69 4 4 221 5 228 4.83e-97 282
MS.gene96244.t1 AT5G39150 63.303 218 77 2 1 215 1 218 5.93e-94 274
MS.gene96244.t1 AT5G39180 63.303 218 77 2 1 215 1 218 1.21e-93 273
MS.gene96244.t1 AT5G39120 64.455 211 72 2 7 215 9 218 2.04e-93 273
MS.gene96244.t1 AT5G39110 63.981 211 74 1 7 215 9 219 2.88e-92 270
MS.gene96244.t1 AT5G39160 63.927 219 74 3 1 215 1 218 3.67e-92 270
MS.gene96244.t1 AT5G39130 65.072 209 70 2 9 215 11 218 4.98e-92 269
MS.gene96244.t1 AT5G39190 63.927 219 74 3 1 215 1 218 5.26e-92 269
MS.gene96244.t1 AT4G14630 61.187 219 81 2 1 215 3 221 5.60e-88 259
MS.gene96244.t1 AT5G39160 61.644 219 75 3 1 215 1 214 2.19e-87 257
MS.gene96244.t1 AT3G04200 60.000 215 83 3 1 213 6 219 2.06e-84 250
MS.gene96244.t1 AT5G38910 60.909 220 79 4 1 215 1 218 6.77e-80 238
MS.gene96244.t1 AT5G39190 58.065 217 68 2 1 215 1 196 1.54e-79 237
MS.gene96244.t1 AT5G39160 57.604 217 69 2 1 215 1 196 4.09e-79 236
MS.gene96244.t1 AT5G38940 61.224 196 73 2 22 215 26 220 6.29e-78 233
MS.gene96244.t1 AT5G38930 62.121 198 72 2 20 215 24 220 8.44e-78 233
MS.gene96244.t1 AT5G38940 61.224 196 73 2 22 215 50 244 8.56e-78 234
MS.gene96244.t1 AT5G38960 60.396 202 76 3 17 215 21 221 2.43e-77 232
MS.gene96244.t1 AT3G04170 56.039 207 85 3 10 214 14 216 1.20e-74 225
MS.gene96244.t1 AT3G04190 55.721 201 86 2 15 213 19 218 1.17e-73 223
MS.gene96244.t1 AT3G04150 52.995 217 96 3 3 214 4 219 3.33e-72 219
MS.gene96244.t1 AT3G04150 50.218 229 97 3 3 214 4 232 1.76e-70 215
MS.gene96244.t1 AT3G04180 53.731 201 90 2 15 213 19 218 2.71e-70 214
MS.gene96244.t1 AT1G02335 46.970 198 98 3 20 215 22 214 6.65e-56 177
MS.gene96244.t1 AT5G38910 49.545 220 67 4 1 215 1 181 9.28e-56 176
MS.gene96244.t1 AT3G62020 45.622 217 109 5 2 215 4 214 1.04e-54 174
MS.gene96244.t1 AT1G09560 45.274 201 103 3 17 215 19 214 1.12e-52 169
MS.gene96244.t1 AT3G05930 46.798 203 99 4 3 202 5 201 4.68e-52 167
MS.gene96244.t1 AT5G26700 47.396 192 87 5 26 213 25 206 1.00e-50 164
MS.gene96244.t1 AT1G18970 44.500 200 102 4 18 215 25 217 6.35e-50 162
MS.gene96244.t1 AT1G18980 45.000 200 101 4 18 215 25 217 1.29e-48 159
MS.gene96244.t1 AT3G62020 47.222 180 89 3 39 215 9 185 2.23e-47 155
MS.gene96244.t1 AT1G10460 41.414 198 108 5 22 214 19 213 1.36e-43 146
MS.gene96244.t1 AT3G10080 39.901 203 113 5 17 215 21 218 1.67e-43 146
MS.gene96244.t1 AT3G10080 39.901 203 113 5 17 215 92 289 6.90e-43 146
MS.gene96244.t1 AT5G20630 40.952 210 112 6 1 208 1 200 1.10e-41 140
MS.gene96244.t1 AT5G61750 41.622 185 103 2 4 186 1 182 7.64e-40 136
MS.gene96244.t1 AT1G72610 40.000 190 105 6 26 213 19 201 4.14e-33 119
MS.gene96244.t1 AT1G74820 38.144 194 111 4 24 215 38 224 1.01e-32 118
MS.gene96244.t1 AT5G38950 54.167 72 33 0 145 216 2 73 1.34e-18 78.2
MS.gene96244.t1 AT5G39100 72.000 50 14 0 7 56 9 58 2.78e-18 75.9

Find 61 sgRNAs with CRISPR-Local

Find 77 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TATATACATACCACCATCTT+TGG 0.255130 2.2:-65388297 None:intergenic
TTTCAATTGAATGTGGGATA+TGG 0.265965 2.2:+65388882 MS.gene96244:CDS
CCTTGTTAGCATCTTGGCTT+TGG 0.311083 2.2:+65388208 MS.gene96244:CDS
TAACACACTCGGTATATCTT+TGG 0.328336 2.2:+65388671 MS.gene96244:CDS
CTTATCCACTTGAAAAGCTT+TGG 0.335788 2.2:-65389009 None:intergenic
GAGACGATTGTTGTCTTGAT+TGG 0.345597 2.2:-65388802 None:intergenic
TGAAAATGAATAAGACCAAT+TGG 0.350439 2.2:-65388864 None:intergenic
ATACTTCCTTGTTAGCATCT+TGG 0.352953 2.2:+65388202 MS.gene96244:CDS
TCTTCAGCTTTAACAAGCTC+GGG 0.388081 2.2:-65388561 None:intergenic
TTGAGAGCCCAAGGCGTTAG+AGG 0.390678 2.2:-65388613 None:intergenic
GAGTGCCTTCGAGTACTATA+AGG 0.397511 2.2:-65388758 None:intergenic
ATATACATACCACCATCTTT+GGG 0.405165 2.2:-65388296 None:intergenic
GGCAACGCTGTTGCTATTGC+TGG 0.409649 2.2:+65388903 MS.gene96244:CDS
ATCTTCAGCTTTAACAAGCT+CGG 0.417068 2.2:-65388562 None:intergenic
GATGTGTTTGTGTTCCCAAT+TGG 0.424230 2.2:+65388849 MS.gene96244:CDS
CAAAAGTCTTGGAGAGGGCT+GGG 0.429933 2.2:-65388257 None:intergenic
ATTATCTTCAAAAGCAGTCT+TGG 0.442184 2.2:+65389042 MS.gene96244:CDS
CTCGAAGGCACTCTTTATGT+TGG 0.443268 2.2:+65388768 MS.gene96244:CDS
ATCACCCTTGTTTAGCACTT+TGG 0.448300 2.2:-65388829 None:intergenic
AATAGTTGGTCTACGGTGAC+TGG 0.448660 2.2:-65388642 None:intergenic
ACAAAAGTCTTGGAGAGGGC+TGG 0.468953 2.2:-65388258 None:intergenic
CCCTAGGGTGAATGTGAGGT+GGG 0.472883 2.2:-65388725 None:intergenic
GTCACCGTAGACCAACTATT+CGG 0.474963 2.2:+65388645 MS.gene96244:CDS
GGGAATGCCTCTAACGCCTT+GGG 0.476287 2.2:+65388606 MS.gene96244:CDS
TTTGCAACAGTGATAACTCC+TGG 0.481242 2.2:-65388942 None:intergenic
TAATTTGCAGTATTTGTGAA+TGG 0.482769 2.2:+65388522 MS.gene96244:intron
TGATTGCAACACAAAAGTCT+TGG 0.490396 2.2:-65388268 None:intergenic
TGGGAATGCCTCTAACGCCT+TGG 0.492501 2.2:+65388605 MS.gene96244:CDS
GAAAATGAATAAGACCAATT+GGG 0.506436 2.2:-65388863 None:intergenic
AATTTGCAGTATTTGTGAAT+GGG 0.515890 2.2:+65388523 MS.gene96244:intron
ATAAGGATCTCTGTTCCCCT+AGG 0.521648 2.2:-65388741 None:intergenic
GTGTGTTAAGTCCGAATAGT+TGG 0.546999 2.2:-65388656 None:intergenic
TGAGGTGGGTTTAAACCCTT+AGG 0.548128 2.2:-65388711 None:intergenic
GCAATCAAAGACCCCAAAGA+TGG 0.554146 2.2:+65388284 MS.gene96244:CDS
CCCACCTCACATTCACCCTA+GGG 0.554780 2.2:+65388725 MS.gene96244:CDS
CCAAAGCCAAGATGCTAACA+AGG 0.556137 2.2:-65388208 None:intergenic
CCCCTAGGGTGAATGTGAGG+TGG 0.562730 2.2:-65388726 None:intergenic
AAAAGTCTTGGAGAGGGCTG+GGG 0.564168 2.2:-65388256 None:intergenic
TTGCAACAGTGATAACTCCT+GGG 0.567087 2.2:-65388941 None:intergenic
GAACCTCGTCGGAAATAAGC+GGG 0.573571 2.2:-65388983 None:intergenic
CTTCACCAAAGTGCTAAACA+AGG 0.580133 2.2:+65388824 MS.gene96244:CDS
GTCATAAGCAAAGGCAAGAG+AGG 0.587461 2.2:-65388234 None:intergenic
AGAACCTCGTCGGAAATAAG+CGG 0.593140 2.2:-65388984 None:intergenic
TGGAGTCACTTGAGAGCCCA+AGG 0.593611 2.2:-65388622 None:intergenic
ACCCACCTCACATTCACCCT+AGG 0.594952 2.2:+65388724 MS.gene96244:CDS
CTATTCGGACTTAACACACT+CGG 0.606951 2.2:+65388660 MS.gene96244:CDS
AGCTTTGGTAAGAACCTCGT+CGG 0.612864 2.2:-65388994 None:intergenic
AAGTCCGAATAGTTGGTCTA+CGG 0.617492 2.2:-65388649 None:intergenic
TAAGGATCTCTGTTCCCCTA+GGG 0.621607 2.2:-65388740 None:intergenic
ATCAAAGACCCCAAAGATGG+TGG 0.628410 2.2:+65388287 MS.gene96244:CDS
AGGGCTGGGGTCATAAGCAA+AGG 0.629845 2.2:-65388243 None:intergenic
CAACACAAAAGTCTTGGAGA+GGG 0.634245 2.2:-65388262 None:intergenic
TATACATACCACCATCTTTG+GGG 0.639620 2.2:-65388295 None:intergenic
GTTCCCCTAGGGTGAATGTG+AGG 0.650118 2.2:-65388729 None:intergenic
GCAACACAAAAGTCTTGGAG+AGG 0.651085 2.2:-65388263 None:intergenic
CTTCAGCTTTAACAAGCTCG+GGG 0.658116 2.2:-65388560 None:intergenic
GAGATCCTTATAGTACTCGA+AGG 0.666965 2.2:+65388753 MS.gene96244:CDS
TTCACCAAAGTGCTAAACAA+GGG 0.675942 2.2:+65388825 MS.gene96244:CDS
GGACTTAGCAGTCAAAACCC+AGG 0.692136 2.2:+65388924 MS.gene96244:CDS
TGACCCGCTTATTTCCGACG+AGG 0.709948 2.2:+65388980 MS.gene96244:CDS
CCACCTCACATTCACCCTAG+GGG 0.723455 2.2:+65388726 MS.gene96244:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ACCATAAAAATATATTTGTA+AGG - chr2.2:65388381-65388400 None:intergenic 15.0%
!!! ATATATAGAATCTTTTGTTT+TGG + chr2.2:65388413-65388432 MS.gene96244:intron 15.0%
!!! TCCTTACAAATATATTTTTA+TGG + chr2.2:65388377-65388396 MS.gene96244:intron 15.0%
!! GTAATTAAGACTTAAAGTTA+AGG - chr2.2:65388325-65388344 None:intergenic 20.0%
!! TTATATCAAAGAAATTTCAG+TGG - chr2.2:65388486-65388505 None:intergenic 20.0%
!!! ATTCATTTTCAATTGAATGT+GGG + chr2.2:65388876-65388895 MS.gene96244:CDS 20.0%
!!! TATTCATTTTCAATTGAATG+TGG + chr2.2:65388875-65388894 MS.gene96244:CDS 20.0%
! AATTTGCAGTATTTGTGAAT+GGG + chr2.2:65388523-65388542 MS.gene96244:intron 25.0%
! CAAAAGATTCTATATATACG+AGG - chr2.2:65388410-65388429 None:intergenic 25.0%
! GAAAATGAATAAGACCAATT+GGG - chr2.2:65388866-65388885 None:intergenic 25.0%
! TGAAAATGAATAAGACCAAT+TGG - chr2.2:65388867-65388886 None:intergenic 25.0%
!! TAATTTGCAGTATTTGTGAA+TGG + chr2.2:65388522-65388541 MS.gene96244:intron 25.0%
ATATACATACCACCATCTTT+GGG - chr2.2:65388299-65388318 None:intergenic 30.0%
ATTATCTTCAAAAGCAGTCT+TGG + chr2.2:65389042-65389061 MS.gene96244:CDS 30.0%
TATATACATACCACCATCTT+TGG - chr2.2:65388300-65388319 None:intergenic 30.0%
TTTCAATTGAATGTGGGATA+TGG + chr2.2:65388882-65388901 MS.gene96244:CDS 30.0%
! TTTTCAAACATGTTGAAGCT+GGG + chr2.2:65388586-65388605 MS.gene96244:CDS 30.0%
! TTTTGGTCCTTAGTGATTTA+TGG + chr2.2:65388430-65388449 MS.gene96244:intron 30.0%
!! TTTTTCAAACATGTTGAAGC+TGG + chr2.2:65388585-65388604 MS.gene96244:CDS 30.0%
AGCTGAACCATAAATCACTA+AGG - chr2.2:65388440-65388459 None:intergenic 35.0%
ATACTTCCTTGTTAGCATCT+TGG + chr2.2:65388202-65388221 MS.gene96244:CDS 35.0%
CTTATCCACTTGAAAAGCTT+TGG - chr2.2:65389012-65389031 None:intergenic 35.0%
TAACACACTCGGTATATCTT+TGG + chr2.2:65388671-65388690 MS.gene96244:CDS 35.0%
TAGTGATTTATGGTTCAGCT+AGG + chr2.2:65388440-65388459 MS.gene96244:intron 35.0%
TATACATACCACCATCTTTG+GGG - chr2.2:65388298-65388317 None:intergenic 35.0%
TGATTGCAACACAAAAGTCT+TGG - chr2.2:65388271-65388290 None:intergenic 35.0%
! ATCTTCAGCTTTAACAAGCT+CGG - chr2.2:65388565-65388584 None:intergenic 35.0%
! TTCACCAAAGTGCTAAACAA+GGG + chr2.2:65388825-65388844 MS.gene96244:CDS 35.0%
!! TCTTACCAAAGCTTTTCAAG+TGG + chr2.2:65389004-65389023 MS.gene96244:CDS 35.0%
CAACACAAAAGTCTTGGAGA+GGG - chr2.2:65388265-65388284 None:intergenic 40.0%
CTATTCGGACTTAACACACT+CGG + chr2.2:65388660-65388679 MS.gene96244:CDS 40.0%
GAGACGATTGTTGTCTTGAT+TGG - chr2.2:65388805-65388824 None:intergenic 40.0%
GAGATCCTTATAGTACTCGA+AGG + chr2.2:65388753-65388772 MS.gene96244:CDS 40.0%
GATGTGTTTGTGTTCCCAAT+TGG + chr2.2:65388849-65388868 MS.gene96244:CDS 40.0%
GTGTGTTAAGTCCGAATAGT+TGG - chr2.2:65388659-65388678 None:intergenic 40.0%
TTGCAACAGTGATAACTCCT+GGG - chr2.2:65388944-65388963 None:intergenic 40.0%
TTTGCAACAGTGATAACTCC+TGG - chr2.2:65388945-65388964 None:intergenic 40.0%
! AAGTCCGAATAGTTGGTCTA+CGG - chr2.2:65388652-65388671 None:intergenic 40.0%
! ATCACCCTTGTTTAGCACTT+TGG - chr2.2:65388832-65388851 None:intergenic 40.0%
! CTTCACCAAAGTGCTAAACA+AGG + chr2.2:65388824-65388843 MS.gene96244:CDS 40.0%
! TCTTCAGCTTTAACAAGCTC+GGG - chr2.2:65388564-65388583 None:intergenic 40.0%
!!! CGCATTGATTTTGTGCCTAA+GGG + chr2.2:65388696-65388715 MS.gene96244:CDS 40.0%
!!! TCGCATTGATTTTGTGCCTA+AGG + chr2.2:65388695-65388714 MS.gene96244:CDS 40.0%
AGAACCTCGTCGGAAATAAG+CGG - chr2.2:65388987-65389006 None:intergenic 45.0%
ATAAGGATCTCTGTTCCCCT+AGG - chr2.2:65388744-65388763 None:intergenic 45.0%
ATCAAAGACCCCAAAGATGG+TGG + chr2.2:65388287-65388306 MS.gene96244:CDS 45.0%
CCAAAGCCAAGATGCTAACA+AGG - chr2.2:65388211-65388230 None:intergenic 45.0%
CCTTGTTAGCATCTTGGCTT+TGG + chr2.2:65388208-65388227 MS.gene96244:CDS 45.0%
GAGTGCCTTCGAGTACTATA+AGG - chr2.2:65388761-65388780 None:intergenic 45.0%
GCAACACAAAAGTCTTGGAG+AGG - chr2.2:65388266-65388285 None:intergenic 45.0%
GCAATCAAAGACCCCAAAGA+TGG + chr2.2:65388284-65388303 MS.gene96244:CDS 45.0%
GTCACCGTAGACCAACTATT+CGG + chr2.2:65388645-65388664 MS.gene96244:CDS 45.0%
GTCATAAGCAAAGGCAAGAG+AGG - chr2.2:65388237-65388256 None:intergenic 45.0%
TAAGGATCTCTGTTCCCCTA+GGG - chr2.2:65388743-65388762 None:intergenic 45.0%
! AATAGTTGGTCTACGGTGAC+TGG - chr2.2:65388645-65388664 None:intergenic 45.0%
! AGCTTTGGTAAGAACCTCGT+CGG - chr2.2:65388997-65389016 None:intergenic 45.0%
! CTTCAGCTTTAACAAGCTCG+GGG - chr2.2:65388563-65388582 None:intergenic 45.0%
! TGAGGTGGGTTTAAACCCTT+AGG - chr2.2:65388714-65388733 None:intergenic 45.0%
!! CTCGAAGGCACTCTTTATGT+TGG + chr2.2:65388768-65388787 MS.gene96244:CDS 45.0%
AAAAGTCTTGGAGAGGGCTG+GGG - chr2.2:65388259-65388278 None:intergenic 50.0%
ACAAAAGTCTTGGAGAGGGC+TGG - chr2.2:65388261-65388280 None:intergenic 50.0%
CAAAAGTCTTGGAGAGGGCT+GGG - chr2.2:65388260-65388279 None:intergenic 50.0%
GAACCTCGTCGGAAATAAGC+GGG - chr2.2:65388986-65389005 None:intergenic 50.0%
GGACTTAGCAGTCAAAACCC+AGG + chr2.2:65388924-65388943 MS.gene96244:CDS 50.0%
ACCCACCTCACATTCACCCT+AGG + chr2.2:65388724-65388743 MS.gene96244:CDS 55.0%
AGGGCTGGGGTCATAAGCAA+AGG - chr2.2:65388246-65388265 None:intergenic 55.0%
CCACCTCACATTCACCCTAG+GGG + chr2.2:65388726-65388745 MS.gene96244:CDS 55.0%
CCCACCTCACATTCACCCTA+GGG + chr2.2:65388725-65388744 MS.gene96244:CDS 55.0%
CCCTAGGGTGAATGTGAGGT+GGG - chr2.2:65388728-65388747 None:intergenic 55.0%
GGGAATGCCTCTAACGCCTT+GGG + chr2.2:65388606-65388625 MS.gene96244:CDS 55.0%
GTTCCCCTAGGGTGAATGTG+AGG - chr2.2:65388732-65388751 None:intergenic 55.0%
TGACCCGCTTATTTCCGACG+AGG + chr2.2:65388980-65388999 MS.gene96244:CDS 55.0%
TGGAGTCACTTGAGAGCCCA+AGG - chr2.2:65388625-65388644 None:intergenic 55.0%
TGGGAATGCCTCTAACGCCT+TGG + chr2.2:65388605-65388624 MS.gene96244:CDS 55.0%
! GGCAACGCTGTTGCTATTGC+TGG + chr2.2:65388903-65388922 MS.gene96244:CDS 55.0%
! TTGAGAGCCCAAGGCGTTAG+AGG - chr2.2:65388616-65388635 None:intergenic 55.0%
CCCCTAGGGTGAATGTGAGG+TGG - chr2.2:65388729-65388748 None:intergenic 60.0%


Chromosome Type Strat End Strand Name
chr2.2 gene 65388191 65389079 65388191 ID=MS.gene96244
chr2.2 mRNA 65388191 65389079 65388191 ID=MS.gene96244.t1;Parent=MS.gene96244
chr2.2 exon 65388191 65388308 65388191 ID=MS.gene96244.t1.exon1;Parent=MS.gene96244.t1
chr2.2 CDS 65388191 65388308 65388191 ID=cds.MS.gene96244.t1;Parent=MS.gene96244.t1
chr2.2 exon 65388532 65389079 65388532 ID=MS.gene96244.t1.exon2;Parent=MS.gene96244.t1
chr2.2 CDS 65388532 65389079 65388532 ID=cds.MS.gene96244.t1;Parent=MS.gene96244.t1
Gene Sequence

>MS.gene96244

ATGAAGATTCTATACTTCCTTGTTAGCATCTTGGCTTTGGCATCCTCTCTTGCCTTTGCTTATGACCCCAGCCCTCTCCAAGACTTTTGTGTTGCAATCAAAGACCCCAAAGATGGTGGTATGTATATATTCCTTAACTTTAAGTCTTAATTACTGCTCAATTTTTAGACTTAAATATGCAAATGCTCCTTACAAATATATTTTTATGGTTTTAGTCCTCGTATATATAGAATCTTTTGTTTTGGTCCTTAGTGATTTATGGTTCAGCTAGGTCAAGACTAAAATAATTATACCACTGAAATTTCTTTGATATAACAAAACTATGATTTGATAATTTGCAGTATTTGTGAATGGGAAATTCTGTAAAGACCCCGAGCTTGTTAAAGCTGAAGATTTTTTCAAACATGTTGAAGCTGGGAATGCCTCTAACGCCTTGGGCTCTCAAGTGACTCCAGTCACCGTAGACCAACTATTCGGACTTAACACACTCGGTATATCTTTGGCTCGCATTGATTTTGTGCCTAAGGGTTTAAACCCACCTCACATTCACCCTAGGGGAACAGAGATCCTTATAGTACTCGAAGGCACTCTTTATGTTGGATTTGTCACGTCCAATCAAGACAACAATCGTCTCTTCACCAAAGTGCTAAACAAGGGTGATGTGTTTGTGTTCCCAATTGGTCTTATTCATTTTCAATTGAATGTGGGATATGGCAACGCTGTTGCTATTGCTGGACTTAGCAGTCAAAACCCAGGAGTTATCACTGTTGCAAATGCTTTGTTTAAATCTGACCCGCTTATTTCCGACGAGGTTCTTACCAAAGCTTTTCAAGTGGATAAGAGCATAATTGATTATCTTCAAAAGCAGTCTTGGTATGACAACAACTAG
Protein sequence

>MS.gene96244.t1

MKILYFLVSILALASSLAFAYDPSPLQDFCVAIKDPKDGVFVNGKFCKDPELVKAEDFFKHVEAGNASNALGSQVTPVTVDQLFGLNTLGISLARIDFVPKGLNPPHIHPRGTEILIVLEGTLYVGFVTSNQDNNRLFTKVLNKGDVFVFPIGLIHFQLNVGYGNAVAIAGLSSQNPGVITVANALFKSDPLISDEVLTKAFQVDKSIIDYLQKQSWYDNN