Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene89773.t1 | XP_003604729.1 | 98.6 | 221 | 3 | 0 | 1 | 221 | 1 | 221 | 1.60E-119 | 438.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene89773.t1 | Q9SFF9 | 65.3 | 225 | 70 | 4 | 4 | 221 | 5 | 228 | 6.5e-74 | 278.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene89773.t1 | G7JQ50 | 98.6 | 221 | 3 | 0 | 1 | 221 | 1 | 221 | 1.1e-119 | 438.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049661 | MS.gene89773 | -0.819579 | 1.08E-52 | -1.69E-46 |
| MS.gene049662 | MS.gene89773 | -0.817938 | 2.54E-52 | -1.69E-46 |
| MS.gene050096 | MS.gene89773 | 0.807637 | 4.59E-50 | -1.69E-46 |
| MS.gene050397 | MS.gene89773 | -0.820927 | 5.30E-53 | -1.69E-46 |
| MS.gene050406 | MS.gene89773 | -0.805306 | 1.42E-49 | -1.69E-46 |
| MS.gene050464 | MS.gene89773 | -0.834332 | 3.19E-56 | -1.69E-46 |
| MS.gene050529 | MS.gene89773 | -0.837362 | 5.44E-57 | -1.69E-46 |
| MS.gene050670 | MS.gene89773 | -0.822198 | 2.69E-53 | -1.69E-46 |
| MS.gene050971 | MS.gene89773 | -0.818133 | 2.30E-52 | -1.69E-46 |
| MS.gene05105 | MS.gene89773 | -0.804729 | 1.88E-49 | -1.69E-46 |
| MS.gene051158 | MS.gene89773 | 0.826756 | 2.28E-54 | -1.69E-46 |
| MS.gene052011 | MS.gene89773 | 0.803895 | 2.80E-49 | -1.69E-46 |
| MS.gene052188 | MS.gene89773 | -0.814691 | 1.35E-51 | -1.69E-46 |
| MS.gene052223 | MS.gene89773 | 0.801764 | 7.72E-49 | -1.69E-46 |
| MS.gene052253 | MS.gene89773 | -0.802188 | 6.32E-49 | -1.69E-46 |
| MS.gene052310 | MS.gene89773 | -0.819153 | 1.35E-52 | -1.69E-46 |
| MS.gene05233 | MS.gene89773 | 0.816332 | 5.84E-52 | -1.69E-46 |
| MS.gene052340 | MS.gene89773 | -0.808692 | 2.73E-50 | -1.69E-46 |
| MS.gene05240 | MS.gene89773 | 0.806537 | 7.84E-50 | -1.69E-46 |
| MS.gene052702 | MS.gene89773 | 0.802802 | 4.72E-49 | -1.69E-46 |
| MS.gene053031 | MS.gene89773 | 0.812183 | 4.82E-51 | -1.69E-46 |
| MS.gene053406 | MS.gene89773 | 0.82075 | 5.82E-53 | -1.69E-46 |
| MS.gene053557 | MS.gene89773 | -0.800615 | 1.33E-48 | -1.69E-46 |
| MS.gene054010 | MS.gene89773 | -0.807847 | 4.14E-50 | -1.69E-46 |
| MS.gene054181 | MS.gene89773 | 0.806397 | 8.39E-50 | -1.69E-46 |
| MS.gene054290 | MS.gene89773 | 0.833957 | 3.96E-56 | -1.69E-46 |
| MS.gene054349 | MS.gene89773 | -0.810659 | 1.03E-50 | -1.69E-46 |
| MS.gene054742 | MS.gene89773 | 0.81584 | 7.52E-52 | -1.69E-46 |
| MS.gene054955 | MS.gene89773 | -0.80918 | 2.15E-50 | -1.69E-46 |
| MS.gene055116 | MS.gene89773 | -0.815722 | 7.99E-52 | -1.69E-46 |
| MS.gene055277 | MS.gene89773 | -0.80706 | 6.08E-50 | -1.69E-46 |
| MS.gene055601 | MS.gene89773 | 0.864402 | 1.25E-64 | -1.69E-46 |
| MS.gene056330 | MS.gene89773 | 0.812604 | 3.90E-51 | -1.69E-46 |
| MS.gene056511 | MS.gene89773 | -0.802917 | 4.47E-49 | -1.69E-46 |
| MS.gene056691 | MS.gene89773 | 0.808182 | 3.51E-50 | -1.69E-46 |
| MS.gene056899 | MS.gene89773 | 0.857978 | 1.13E-62 | -1.69E-46 |
| MS.gene056920 | MS.gene89773 | 0.800684 | 1.28E-48 | -1.69E-46 |
| MS.gene05702 | MS.gene89773 | -0.806518 | 7.91E-50 | -1.69E-46 |
| MS.gene057544 | MS.gene89773 | 0.807745 | 4.35E-50 | -1.69E-46 |
| MS.gene057749 | MS.gene89773 | -0.812316 | 4.51E-51 | -1.69E-46 |
| MS.gene057823 | MS.gene89773 | -0.813629 | 2.32E-51 | -1.69E-46 |
| MS.gene058218 | MS.gene89773 | 0.865858 | 4.35E-65 | -1.69E-46 |
| MS.gene058660 | MS.gene89773 | -0.824299 | 8.70E-54 | -1.69E-46 |
| MS.gene058928 | MS.gene89773 | -0.832941 | 7.09E-56 | -1.69E-46 |
| MS.gene059043 | MS.gene89773 | 0.83242 | 9.55E-56 | -1.69E-46 |
| MS.gene05907 | MS.gene89773 | -0.830921 | 2.24E-55 | -1.69E-46 |
| MS.gene059294 | MS.gene89773 | -0.854141 | 1.50E-61 | -1.69E-46 |
| MS.gene059402 | MS.gene89773 | 0.83586 | 1.31E-56 | -1.69E-46 |
| MS.gene059676 | MS.gene89773 | -0.80198 | 6.97E-49 | -1.69E-46 |
| MS.gene059688 | MS.gene89773 | -0.808434 | 3.10E-50 | -1.69E-46 |
| MS.gene059955 | MS.gene89773 | 0.81351 | 2.47E-51 | -1.69E-46 |
| MS.gene060403 | MS.gene89773 | -0.808656 | 2.78E-50 | -1.69E-46 |
| MS.gene061049 | MS.gene89773 | -0.819573 | 1.08E-52 | -1.69E-46 |
PPI:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene89773.t1 | MTR_5g046410 | 98.643 | 221 | 3 | 0 | 1 | 221 | 1 | 221 | 9.83e-161 | 443 |
| MS.gene89773.t1 | MTR_5g046430 | 98.643 | 221 | 3 | 0 | 1 | 221 | 1 | 221 | 9.83e-161 | 443 |
| MS.gene89773.t1 | MTR_4g017030 | 98.643 | 221 | 3 | 0 | 1 | 221 | 1 | 221 | 9.83e-161 | 443 |
| MS.gene89773.t1 | MTR_4g017050 | 98.190 | 221 | 4 | 0 | 1 | 221 | 1 | 221 | 3.36e-160 | 442 |
| MS.gene89773.t1 | MTR_2g019250 | 97.285 | 221 | 6 | 0 | 1 | 221 | 1 | 221 | 2.98e-159 | 439 |
| MS.gene89773.t1 | MTR_4g017040 | 97.738 | 221 | 5 | 0 | 1 | 221 | 1 | 221 | 4.01e-159 | 439 |
| MS.gene89773.t1 | MTR_1g079490 | 81.081 | 222 | 41 | 1 | 1 | 221 | 1 | 222 | 8.54e-131 | 367 |
| MS.gene89773.t1 | MTR_6g005360 | 75.113 | 221 | 54 | 1 | 1 | 221 | 1 | 220 | 4.75e-118 | 335 |
| MS.gene89773.t1 | MTR_6g005340 | 77.064 | 218 | 48 | 2 | 4 | 221 | 5 | 220 | 5.78e-118 | 335 |
| MS.gene89773.t1 | MTR_6g005330 | 76.577 | 222 | 49 | 3 | 1 | 221 | 1 | 220 | 7.95e-118 | 334 |
| MS.gene89773.t1 | MTR_6g005310 | 76.959 | 217 | 48 | 2 | 4 | 220 | 5 | 219 | 2.46e-117 | 333 |
| MS.gene89773.t1 | MTR_6g005350 | 63.470 | 219 | 77 | 3 | 3 | 221 | 4 | 219 | 1.87e-90 | 265 |
| MS.gene89773.t1 | MTR_6g005380 | 61.058 | 208 | 81 | 0 | 1 | 208 | 1 | 208 | 1.15e-87 | 258 |
| MS.gene89773.t1 | MTR_1g023770 | 59.908 | 217 | 76 | 3 | 1 | 215 | 1 | 208 | 1.30e-81 | 242 |
| MS.gene89773.t1 | MTR_2g030855 | 60.500 | 200 | 69 | 4 | 19 | 215 | 19 | 211 | 7.23e-78 | 233 |
| MS.gene89773.t1 | MTR_2g031270 | 57.991 | 219 | 81 | 5 | 1 | 215 | 1 | 212 | 5.07e-74 | 223 |
| MS.gene89773.t1 | MTR_2g030895 | 64.162 | 173 | 56 | 4 | 47 | 215 | 7 | 177 | 1.27e-71 | 216 |
| MS.gene89773.t1 | MTR_2g030865 | 63.584 | 173 | 57 | 4 | 47 | 215 | 7 | 177 | 1.31e-69 | 211 |
| MS.gene89773.t1 | MTR_1g085500 | 46.009 | 213 | 108 | 3 | 5 | 215 | 6 | 213 | 3.06e-60 | 188 |
| MS.gene89773.t1 | MTR_1g085140 | 46.000 | 200 | 101 | 3 | 18 | 215 | 20 | 214 | 1.15e-53 | 172 |
| MS.gene89773.t1 | MTR_7g111240 | 47.449 | 196 | 96 | 3 | 22 | 215 | 20 | 210 | 3.85e-52 | 167 |
| MS.gene89773.t1 | MTR_2g031300 | 54.386 | 171 | 53 | 4 | 47 | 214 | 7 | 155 | 1.21e-51 | 164 |
| MS.gene89773.t1 | MTR_7g111240 | 47.449 | 196 | 93 | 3 | 22 | 215 | 20 | 207 | 7.43e-51 | 164 |
| MS.gene89773.t1 | MTR_5g036570 | 45.685 | 197 | 99 | 4 | 22 | 215 | 27 | 218 | 2.05e-49 | 161 |
| MS.gene89773.t1 | MTR_1g112200 | 41.346 | 208 | 90 | 7 | 19 | 215 | 20 | 206 | 2.13e-43 | 145 |
| MS.gene89773.t1 | MTR_2g041550 | 45.213 | 188 | 94 | 4 | 28 | 213 | 23 | 203 | 1.67e-42 | 143 |
| MS.gene89773.t1 | MTR_1g060120 | 37.104 | 221 | 127 | 5 | 2 | 215 | 5 | 220 | 3.97e-42 | 142 |
| MS.gene89773.t1 | MTR_2g041570 | 38.498 | 213 | 114 | 5 | 4 | 214 | 7 | 204 | 1.01e-38 | 133 |
| MS.gene89773.t1 | MTR_2g041580 | 38.679 | 212 | 113 | 5 | 4 | 213 | 7 | 203 | 1.30e-38 | 133 |
| MS.gene89773.t1 | MTR_8g007300 | 40.000 | 200 | 107 | 4 | 22 | 219 | 26 | 214 | 4.27e-36 | 127 |
| MS.gene89773.t1 | MTR_8g020590 | 40.838 | 191 | 104 | 5 | 26 | 214 | 19 | 202 | 9.66e-35 | 123 |
| MS.gene89773.t1 | MTR_8g020750 | 39.594 | 197 | 99 | 5 | 1 | 190 | 1 | 184 | 3.53e-34 | 121 |
| MS.gene89773.t1 | MTR_3g019710 | 39.378 | 193 | 107 | 5 | 7 | 197 | 3 | 187 | 9.67e-33 | 117 |
| MS.gene89773.t1 | MTR_8g020630 | 39.227 | 181 | 97 | 5 | 1 | 179 | 1 | 170 | 1.52e-32 | 117 |
| MS.gene89773.t1 | MTR_2g036120 | 36.967 | 211 | 117 | 6 | 1 | 206 | 1 | 200 | 6.08e-31 | 113 |
| MS.gene89773.t1 | MTR_8g020650 | 35.938 | 192 | 112 | 5 | 26 | 215 | 22 | 204 | 3.05e-30 | 111 |
| MS.gene89773.t1 | MTR_8g020770 | 40.223 | 179 | 95 | 4 | 1 | 176 | 1 | 170 | 4.78e-30 | 110 |
| MS.gene89773.t1 | MTR_8g020670 | 34.101 | 217 | 128 | 6 | 1 | 215 | 1 | 204 | 1.95e-29 | 109 |
| MS.gene89773.t1 | MTR_3g019650 | 39.655 | 174 | 95 | 5 | 26 | 197 | 21 | 186 | 5.42e-29 | 108 |
| MS.gene89773.t1 | MTR_0284s0010 | 36.967 | 211 | 117 | 6 | 1 | 206 | 1 | 200 | 7.25e-29 | 107 |
| MS.gene89773.t1 | MTR_3g019680 | 37.313 | 201 | 107 | 7 | 1 | 197 | 1 | 186 | 7.46e-29 | 107 |
| MS.gene89773.t1 | MTR_2g044040 | 36.872 | 179 | 100 | 5 | 1 | 177 | 1 | 168 | 2.74e-28 | 106 |
| MS.gene89773.t1 | MTR_2g086640 | 34.101 | 217 | 117 | 7 | 2 | 214 | 7 | 201 | 3.08e-28 | 106 |
| MS.gene89773.t1 | MTR_2g045100 | 36.493 | 211 | 118 | 6 | 1 | 206 | 1 | 200 | 6.23e-28 | 105 |
| MS.gene89773.t1 | MTR_4g052770 | 34.562 | 217 | 115 | 7 | 3 | 214 | 9 | 203 | 1.08e-27 | 104 |
| MS.gene89773.t1 | MTR_4g052780 | 35.784 | 204 | 105 | 6 | 16 | 214 | 21 | 203 | 1.72e-27 | 104 |
| MS.gene89773.t1 | MTR_2g086620 | 33.023 | 215 | 122 | 6 | 2 | 214 | 8 | 202 | 2.57e-27 | 103 |
| MS.gene89773.t1 | MTR_3g096330 | 38.202 | 178 | 104 | 3 | 4 | 179 | 559 | 732 | 3.06e-27 | 109 |
| MS.gene89773.t1 | MTR_2g086630 | 32.558 | 215 | 123 | 6 | 2 | 214 | 8 | 202 | 6.90e-27 | 102 |
| MS.gene89773.t1 | MTR_5g031460 | 34.286 | 210 | 124 | 5 | 1 | 206 | 1 | 200 | 1.12e-26 | 102 |
| MS.gene89773.t1 | MTR_8g020610 | 33.953 | 215 | 125 | 7 | 1 | 213 | 1 | 200 | 1.55e-25 | 99.4 |
| MS.gene89773.t1 | MTR_8g020760 | 33.641 | 217 | 131 | 6 | 1 | 215 | 1 | 206 | 3.80e-25 | 98.2 |
| MS.gene89773.t1 | MTR_4g010340 | 35.321 | 218 | 116 | 8 | 2 | 215 | 4 | 200 | 5.56e-25 | 97.8 |
| MS.gene89773.t1 | MTR_7g011340 | 37.097 | 186 | 105 | 5 | 26 | 206 | 22 | 200 | 1.47e-24 | 96.7 |
| MS.gene89773.t1 | MTR_8g020763 | 36.095 | 169 | 99 | 3 | 43 | 206 | 17 | 181 | 8.45e-24 | 94.4 |
| MS.gene89773.t1 | MTR_2g019780 | 32.420 | 219 | 132 | 7 | 1 | 215 | 1 | 207 | 1.04e-23 | 94.4 |
| MS.gene89773.t1 | MTR_3g073170 | 35.484 | 186 | 104 | 6 | 27 | 206 | 26 | 201 | 2.62e-23 | 93.6 |
| MS.gene89773.t1 | MTR_3g019810 | 33.659 | 205 | 114 | 9 | 1 | 202 | 107 | 292 | 9.16e-19 | 83.2 |
| MS.gene89773.t1 | MTR_2g030915 | 48.684 | 76 | 24 | 1 | 93 | 168 | 1 | 61 | 1.10e-17 | 75.5 |
| MS.gene89773.t1 | MTR_4g027415 | 37.500 | 128 | 71 | 4 | 26 | 151 | 22 | 142 | 1.25e-15 | 71.2 |
| MS.gene89773.t1 | MTR_2g072560 | 36.885 | 122 | 68 | 4 | 1 | 120 | 1 | 115 | 5.17e-13 | 64.3 |
| MS.gene89773.t1 | MTR_3g019610 | 38.393 | 112 | 60 | 4 | 1 | 110 | 1 | 105 | 4.30e-11 | 58.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene89773.t1 | AT3G05950 | 65.333 | 225 | 70 | 4 | 4 | 221 | 5 | 228 | 2.49e-96 | 280 |
| MS.gene89773.t1 | AT5G39150 | 63.761 | 218 | 76 | 2 | 1 | 215 | 1 | 218 | 1.43e-94 | 276 |
| MS.gene89773.t1 | AT5G39180 | 63.761 | 218 | 76 | 2 | 1 | 215 | 1 | 218 | 2.76e-94 | 275 |
| MS.gene89773.t1 | AT5G39120 | 64.929 | 211 | 71 | 2 | 7 | 215 | 9 | 218 | 4.46e-94 | 275 |
| MS.gene89773.t1 | AT5G39110 | 64.455 | 211 | 73 | 1 | 7 | 215 | 9 | 219 | 1.56e-92 | 270 |
| MS.gene89773.t1 | AT5G39160 | 64.384 | 219 | 73 | 3 | 1 | 215 | 1 | 218 | 1.97e-92 | 270 |
| MS.gene89773.t1 | AT5G39190 | 64.384 | 219 | 73 | 3 | 1 | 215 | 1 | 218 | 3.29e-92 | 270 |
| MS.gene89773.t1 | AT5G39130 | 65.072 | 209 | 70 | 2 | 9 | 215 | 11 | 218 | 8.15e-92 | 269 |
| MS.gene89773.t1 | AT4G14630 | 61.187 | 219 | 81 | 2 | 1 | 215 | 3 | 221 | 5.85e-88 | 259 |
| MS.gene89773.t1 | AT5G39160 | 62.100 | 219 | 74 | 3 | 1 | 215 | 1 | 214 | 1.14e-87 | 258 |
| MS.gene89773.t1 | AT3G04200 | 60.930 | 215 | 81 | 3 | 1 | 213 | 6 | 219 | 7.46e-85 | 251 |
| MS.gene89773.t1 | AT5G39190 | 58.525 | 217 | 67 | 2 | 1 | 215 | 1 | 196 | 3.53e-80 | 238 |
| MS.gene89773.t1 | AT5G39160 | 58.065 | 217 | 68 | 2 | 1 | 215 | 1 | 196 | 1.14e-79 | 237 |
| MS.gene89773.t1 | AT5G38910 | 59.545 | 220 | 82 | 4 | 1 | 215 | 1 | 218 | 9.10e-79 | 236 |
| MS.gene89773.t1 | AT5G38960 | 60.697 | 201 | 75 | 3 | 18 | 215 | 22 | 221 | 8.54e-78 | 233 |
| MS.gene89773.t1 | AT5G38940 | 60.714 | 196 | 74 | 2 | 22 | 215 | 26 | 220 | 1.43e-77 | 233 |
| MS.gene89773.t1 | AT5G38940 | 60.714 | 196 | 74 | 2 | 22 | 215 | 50 | 244 | 2.21e-77 | 233 |
| MS.gene89773.t1 | AT5G38930 | 61.616 | 198 | 73 | 2 | 20 | 215 | 24 | 220 | 2.36e-77 | 232 |
| MS.gene89773.t1 | AT3G04170 | 55.981 | 209 | 86 | 3 | 8 | 214 | 12 | 216 | 8.54e-75 | 226 |
| MS.gene89773.t1 | AT3G04190 | 56.219 | 201 | 85 | 2 | 15 | 213 | 19 | 218 | 6.44e-74 | 223 |
| MS.gene89773.t1 | AT3G04150 | 53.917 | 217 | 94 | 3 | 3 | 214 | 4 | 219 | 1.39e-72 | 220 |
| MS.gene89773.t1 | AT3G04180 | 54.726 | 201 | 88 | 2 | 15 | 213 | 19 | 218 | 8.44e-71 | 215 |
| MS.gene89773.t1 | AT3G04150 | 51.092 | 229 | 95 | 3 | 3 | 214 | 4 | 232 | 9.76e-71 | 216 |
| MS.gene89773.t1 | AT1G02335 | 46.465 | 198 | 99 | 3 | 20 | 215 | 22 | 214 | 6.43e-56 | 177 |
| MS.gene89773.t1 | AT5G38910 | 48.636 | 220 | 69 | 4 | 1 | 215 | 1 | 181 | 3.01e-55 | 174 |
| MS.gene89773.t1 | AT3G62020 | 45.161 | 217 | 110 | 5 | 2 | 215 | 4 | 214 | 5.70e-55 | 175 |
| MS.gene89773.t1 | AT1G09560 | 45.274 | 201 | 103 | 3 | 17 | 215 | 19 | 214 | 2.76e-53 | 171 |
| MS.gene89773.t1 | AT3G05930 | 46.798 | 203 | 99 | 4 | 3 | 202 | 5 | 201 | 2.49e-52 | 168 |
| MS.gene89773.t1 | AT1G18970 | 46.000 | 200 | 99 | 4 | 18 | 215 | 25 | 217 | 3.59e-51 | 165 |
| MS.gene89773.t1 | AT5G26700 | 46.875 | 192 | 88 | 5 | 26 | 213 | 25 | 206 | 1.19e-50 | 164 |
| MS.gene89773.t1 | AT1G18980 | 45.500 | 200 | 100 | 4 | 18 | 215 | 25 | 217 | 5.48e-49 | 160 |
| MS.gene89773.t1 | AT3G62020 | 46.667 | 180 | 90 | 3 | 39 | 215 | 9 | 185 | 2.05e-47 | 155 |
| MS.gene89773.t1 | AT1G10460 | 41.414 | 198 | 108 | 5 | 22 | 214 | 19 | 213 | 3.34e-44 | 147 |
| MS.gene89773.t1 | AT3G10080 | 40.099 | 202 | 112 | 5 | 18 | 215 | 22 | 218 | 4.15e-44 | 147 |
| MS.gene89773.t1 | AT3G10080 | 40.099 | 202 | 112 | 5 | 18 | 215 | 93 | 289 | 1.62e-43 | 148 |
| MS.gene89773.t1 | AT5G20630 | 41.905 | 210 | 110 | 6 | 1 | 208 | 1 | 200 | 4.98e-42 | 142 |
| MS.gene89773.t1 | AT5G61750 | 41.081 | 185 | 104 | 2 | 4 | 186 | 1 | 182 | 5.59e-40 | 136 |
| MS.gene89773.t1 | AT1G72610 | 41.053 | 190 | 103 | 6 | 26 | 213 | 19 | 201 | 4.13e-34 | 121 |
| MS.gene89773.t1 | AT1G74820 | 38.660 | 194 | 110 | 4 | 24 | 215 | 38 | 224 | 4.43e-33 | 119 |
| MS.gene89773.t1 | AT5G38950 | 54.167 | 72 | 33 | 0 | 145 | 216 | 2 | 73 | 1.42e-18 | 78.2 |
| MS.gene89773.t1 | AT5G39100 | 72.000 | 50 | 14 | 0 | 7 | 56 | 9 | 58 | 7.94e-18 | 74.7 |
Find 58 sgRNAs with CRISPR-Local
Find 71 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TATATACATACCACCATCTT+TGG | 0.255130 | 4.4:+83697128 | None:intergenic |
| TTTCAACTGAATGTGGGATA+TGG | 0.310660 | 4.4:-83696519 | MS.gene89773:CDS |
| CCTTGTTAGCATCTTGGCTT+TGG | 0.311083 | 4.4:-83697217 | MS.gene89773:CDS |
| TGAAAATGAATTAGACCAAT+TGG | 0.315504 | 4.4:+83696537 | None:intergenic |
| GTACTTCCTTGTTAGCATCT+TGG | 0.325278 | 4.4:-83697223 | MS.gene89773:CDS |
| TTGAGATCCTAGTGCATTAG+AGG | 0.333822 | 4.4:+83696788 | None:intergenic |
| CTTATCCACTTGAAAAGCTT+TGG | 0.335788 | 4.4:+83696392 | None:intergenic |
| TAACACGCTTGGTATATCTT+TGG | 0.340502 | 4.4:-83696730 | MS.gene89773:CDS |
| GAGTGCCTTCGAGTACTATA+AGG | 0.397511 | 4.4:+83696643 | None:intergenic |
| TTCTTCAAACATGTTGAAGC+TGG | 0.402098 | 4.4:-83696816 | MS.gene89773:CDS |
| ATATACATACCACCATCTTT+GGG | 0.405165 | 4.4:+83697129 | None:intergenic |
| GGCAACGCTGTTGCTATTGC+TGG | 0.409649 | 4.4:-83696498 | MS.gene89773:CDS |
| CTCTAGGGTGGATGTGAGGT+GGG | 0.411548 | 4.4:+83696676 | None:intergenic |
| GATGTGTTTGTGTTCCCAAT+TGG | 0.424230 | 4.4:-83696552 | MS.gene89773:CDS |
| TAAAGAGCCGGTTGTTGTCT+TGG | 0.425026 | 4.4:+83696595 | None:intergenic |
| CAAAAGTCTTGGAGAGGGCT+AGG | 0.434671 | 4.4:+83697168 | None:intergenic |
| TAATTTGCAGTATTCGTGAA+TGG | 0.437869 | 4.4:-83696879 | MS.gene89773:intron |
| ATTATCTTCAAAAGCAGTCT+TGG | 0.442184 | 4.4:-83696359 | MS.gene89773:CDS |
| CTCGAAGGCACTCTTTATGT+TGG | 0.443268 | 4.4:-83696633 | MS.gene89773:CDS |
| TCTTCAGCTTTAACAAGTGC+GGG | 0.444792 | 4.4:+83696840 | None:intergenic |
| GTCACTGTAGACCAACTATT+CGG | 0.446134 | 4.4:-83696756 | MS.gene89773:CDS |
| CATCAAACCAAGACAACAAC+CGG | 0.452231 | 4.4:-83696602 | MS.gene89773:CDS |
| GAAAATGAATTAGACCAATT+GGG | 0.461091 | 4.4:+83696538 | None:intergenic |
| ATAAGGATCTCTGTTCCTCT+AGG | 0.468428 | 4.4:+83696660 | None:intergenic |
| TTTGCAACGGTGATAACTCC+TGG | 0.470922 | 4.4:+83696459 | None:intergenic |
| TGATTGCAACACAAAAGTCT+TGG | 0.490396 | 4.4:+83697157 | None:intergenic |
| AATTTGCAGTATTCGTGAAT+GGG | 0.491761 | 4.4:-83696878 | MS.gene89773:intron |
| CCTCTAGGGTGGATGTGAGG+TGG | 0.496940 | 4.4:+83696675 | None:intergenic |
| TCTTCAAACATGTTGAAGCT+GGG | 0.501315 | 4.4:-83696815 | MS.gene89773:CDS |
| CTATTCGGACTTAACACGCT+TGG | 0.510323 | 4.4:-83696741 | MS.gene89773:CDS |
| AGAACTTCGTCGGAAATAAG+AGG | 0.511108 | 4.4:+83696417 | None:intergenic |
| AATAGTTGGTCTACAGTGAC+TGG | 0.527501 | 4.4:+83696759 | None:intergenic |
| GCGTGTTAAGTCCGAATAGT+TGG | 0.534502 | 4.4:+83696745 | None:intergenic |
| TGAGGTGGGTTTAAACCCTT+AGG | 0.537084 | 4.4:+83696690 | None:intergenic |
| ATCTTCAGCTTTAACAAGTG+CGG | 0.543612 | 4.4:+83696839 | None:intergenic |
| CTTTACCAAGGTGCTCAACA+AGG | 0.544491 | 4.4:-83696577 | MS.gene89773:CDS |
| GCAATCAAAGACCCCAAAGA+TGG | 0.554146 | 4.4:-83697141 | MS.gene89773:CDS |
| AGCTTTGGTAAGAACTTCGT+CGG | 0.555884 | 4.4:+83696407 | None:intergenic |
| CCAAAGCCAAGATGCTAACA+AGG | 0.556137 | 4.4:+83697217 | None:intergenic |
| AAAAGTCTTGGAGAGGGCTA+GGG | 0.564154 | 4.4:+83697169 | None:intergenic |
| ATCACCCTTGTTGAGCACCT+TGG | 0.567836 | 4.4:+83696572 | None:intergenic |
| TAAGGATCTCTGTTCCTCTA+GGG | 0.571738 | 4.4:+83696661 | None:intergenic |
| GGACTTAGCAGTCAAAATCC+AGG | 0.578792 | 4.4:-83696477 | MS.gene89773:CDS |
| TGAGCACCTTGGTAAAGAGC+CGG | 0.579420 | 4.4:+83696583 | None:intergenic |
| GGGAATGCCTCTAATGCACT+AGG | 0.589101 | 4.4:-83696795 | MS.gene89773:CDS |
| GGATCTCTGTTCCTCTAGGG+TGG | 0.590427 | 4.4:+83696664 | None:intergenic |
| TTTAAACAAAGCATTTGCAA+CGG | 0.590900 | 4.4:+83696446 | None:intergenic |
| AGGGCTAGGGTCATAAGCAA+AGG | 0.622370 | 4.4:+83697182 | None:intergenic |
| ATCAAAGACCCCAAAGATGG+TGG | 0.628410 | 4.4:-83697138 | MS.gene89773:intron |
| TATACATACCACCATCTTTG+GGG | 0.639620 | 4.4:+83697130 | None:intergenic |
| CAACACAAAAGTCTTGGAGA+GGG | 0.641422 | 4.4:+83697163 | None:intergenic |
| GTTCCTCTAGGGTGGATGTG+AGG | 0.650118 | 4.4:+83696672 | None:intergenic |
| GCAACACAAAAGTCTTGGAG+AGG | 0.651085 | 4.4:+83697162 | None:intergenic |
| CCACCTCACATCCACCCTAG+AGG | 0.660499 | 4.4:-83696675 | MS.gene89773:CDS |
| CTTCAGCTTTAACAAGTGCG+GGG | 0.662073 | 4.4:+83696841 | None:intergenic |
| GAGATCCTTATAGTACTCGA+AGG | 0.666965 | 4.4:-83696648 | MS.gene89773:CDS |
| TTTACCAAGGTGCTCAACAA+GGG | 0.669433 | 4.4:-83696576 | MS.gene89773:CDS |
| CAACAACCGGCTCTTTACCA+AGG | 0.674974 | 4.4:-83696589 | MS.gene89773:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TCTCAATAAATATATTTTTA+TGG | - | chr4.4:83696555-83696574 | MS.gene89773:CDS | 10.0% |
| !! | TAAAATGTTTGATATTTGTA+AGG | + | chr4.4:83696528-83696547 | None:intergenic | 15.0% |
| !!! | TTAATTACTACTCAATTTTT+AGG | - | chr4.4:83696484-83696503 | MS.gene89773:CDS | 15.0% |
| !!! | ATGTATAGAATCTTTTGTTT+TGG | - | chr4.4:83696591-83696610 | MS.gene89773:CDS | 20.0% |
| ! | GAAAATGAATTAGACCAATT+GGG | + | chr4.4:83697043-83697062 | None:intergenic | 25.0% |
| ! | TGAAAATGAATTAGACCAAT+TGG | + | chr4.4:83697044-83697063 | None:intergenic | 25.0% |
| ! | TGAGTAGTAATTAAGACTTA+AGG | + | chr4.4:83696478-83696497 | None:intergenic | 25.0% |
| !! | AATTCATTTTCAACTGAATG+TGG | - | chr4.4:83697052-83697071 | MS.gene89773:intron | 25.0% |
| !! | ATTCATTTTCAACTGAATGT+GGG | - | chr4.4:83697053-83697072 | MS.gene89773:intron | 25.0% |
| !! | TTTAAACAAAGCATTTGCAA+CGG | + | chr4.4:83697135-83697154 | None:intergenic | 25.0% |
| AATTTGCAGTATTCGTGAAT+GGG | - | chr4.4:83696700-83696719 | MS.gene89773:CDS | 30.0% | |
| ATATACATACCACCATCTTT+GGG | + | chr4.4:83696452-83696471 | None:intergenic | 30.0% | |
| ATTATCTTCAAAAGCAGTCT+TGG | - | chr4.4:83697219-83697238 | MS.gene89773:CDS | 30.0% | |
| TATATACATACCACCATCTT+TGG | + | chr4.4:83696453-83696472 | None:intergenic | 30.0% | |
| ! | TAATTTGCAGTATTCGTGAA+TGG | - | chr4.4:83696699-83696718 | MS.gene89773:CDS | 30.0% |
| CTTATCCACTTGAAAAGCTT+TGG | + | chr4.4:83697189-83697208 | None:intergenic | 35.0% | |
| TAACACGCTTGGTATATCTT+TGG | - | chr4.4:83696848-83696867 | MS.gene89773:CDS | 35.0% | |
| TATACATACCACCATCTTTG+GGG | + | chr4.4:83696451-83696470 | None:intergenic | 35.0% | |
| TCTTCAAACATGTTGAAGCT+GGG | - | chr4.4:83696763-83696782 | MS.gene89773:CDS | 35.0% | |
| TGATTGCAACACAAAAGTCT+TGG | + | chr4.4:83696424-83696443 | None:intergenic | 35.0% | |
| TTCTTCAAACATGTTGAAGC+TGG | - | chr4.4:83696762-83696781 | MS.gene89773:CDS | 35.0% | |
| TTTCAACTGAATGTGGGATA+TGG | - | chr4.4:83697059-83697078 | MS.gene89773:intron | 35.0% | |
| ! | ATCTTCAGCTTTAACAAGTG+CGG | + | chr4.4:83696742-83696761 | None:intergenic | 35.0% |
| !! | TCTTACCAAAGCTTTTCAAG+TGG | - | chr4.4:83697181-83697200 | MS.gene89773:CDS | 35.0% |
| AGAACTTCGTCGGAAATAAG+AGG | + | chr4.4:83697164-83697183 | None:intergenic | 40.0% | |
| ATAAGGATCTCTGTTCCTCT+AGG | + | chr4.4:83696921-83696940 | None:intergenic | 40.0% | |
| CAACACAAAAGTCTTGGAGA+GGG | + | chr4.4:83696418-83696437 | None:intergenic | 40.0% | |
| CATCAAACCAAGACAACAAC+CGG | - | chr4.4:83696976-83696995 | MS.gene89773:intron | 40.0% | |
| GAGATCCTTATAGTACTCGA+AGG | - | chr4.4:83696930-83696949 | MS.gene89773:intron | 40.0% | |
| GATGTGTTTGTGTTCCCAAT+TGG | - | chr4.4:83697026-83697045 | MS.gene89773:intron | 40.0% | |
| GTACTTCCTTGTTAGCATCT+TGG | - | chr4.4:83696355-83696374 | MS.gene89773:CDS | 40.0% | |
| GTCACTGTAGACCAACTATT+CGG | - | chr4.4:83696822-83696841 | MS.gene89773:CDS | 40.0% | |
| TAAGGATCTCTGTTCCTCTA+GGG | + | chr4.4:83696920-83696939 | None:intergenic | 40.0% | |
| TTGAGATCCTAGTGCATTAG+AGG | + | chr4.4:83696793-83696812 | None:intergenic | 40.0% | |
| ! | AATAGTTGGTCTACAGTGAC+TGG | + | chr4.4:83696822-83696841 | None:intergenic | 40.0% |
| ! | AGCTTTGGTAAGAACTTCGT+CGG | + | chr4.4:83697174-83697193 | None:intergenic | 40.0% |
| ! | TCTTCAGCTTTAACAAGTGC+GGG | + | chr4.4:83696741-83696760 | None:intergenic | 40.0% |
| ! | TTTACCAAGGTGCTCAACAA+GGG | - | chr4.4:83697002-83697021 | MS.gene89773:intron | 40.0% |
| AAAAGTCTTGGAGAGGGCTA+GGG | + | chr4.4:83696412-83696431 | None:intergenic | 45.0% | |
| AGCTAAACCAGCAATCACTG+AGG | + | chr4.4:83696618-83696637 | None:intergenic | 45.0% | |
| ATCAAAGACCCCAAAGATGG+TGG | - | chr4.4:83696440-83696459 | MS.gene89773:CDS | 45.0% | |
| CCAAAGCCAAGATGCTAACA+AGG | + | chr4.4:83696364-83696383 | None:intergenic | 45.0% | |
| CCTTGTTAGCATCTTGGCTT+TGG | - | chr4.4:83696361-83696380 | MS.gene89773:CDS | 45.0% | |
| CTATTCGGACTTAACACGCT+TGG | - | chr4.4:83696837-83696856 | MS.gene89773:CDS | 45.0% | |
| GAGTGCCTTCGAGTACTATA+AGG | + | chr4.4:83696938-83696957 | None:intergenic | 45.0% | |
| GCAACACAAAAGTCTTGGAG+AGG | + | chr4.4:83696419-83696438 | None:intergenic | 45.0% | |
| GCAATCAAAGACCCCAAAGA+TGG | - | chr4.4:83696437-83696456 | MS.gene89773:CDS | 45.0% | |
| GCGTGTTAAGTCCGAATAGT+TGG | + | chr4.4:83696836-83696855 | None:intergenic | 45.0% | |
| GGACTTAGCAGTCAAAATCC+AGG | - | chr4.4:83697101-83697120 | MS.gene89773:intron | 45.0% | |
| TAAAGAGCCGGTTGTTGTCT+TGG | + | chr4.4:83696986-83697005 | None:intergenic | 45.0% | |
| TTTGCAACGGTGATAACTCC+TGG | + | chr4.4:83697122-83697141 | None:intergenic | 45.0% | |
| ! | CTTCAGCTTTAACAAGTGCG+GGG | + | chr4.4:83696740-83696759 | None:intergenic | 45.0% |
| ! | CTTTACCAAGGTGCTCAACA+AGG | - | chr4.4:83697001-83697020 | MS.gene89773:intron | 45.0% |
| ! | TGAGGTGGGTTTAAACCCTT+AGG | + | chr4.4:83696891-83696910 | None:intergenic | 45.0% |
| ! | TTTTGGTCCTCAGTGATTGC+TGG | - | chr4.4:83696608-83696627 | MS.gene89773:CDS | 45.0% |
| !! | CAGTGATTGCTGGTTTAGCT+AGG | - | chr4.4:83696618-83696637 | MS.gene89773:CDS | 45.0% |
| !! | CTCGAAGGCACTCTTTATGT+TGG | - | chr4.4:83696945-83696964 | MS.gene89773:intron | 45.0% |
| AGGGCTAGGGTCATAAGCAA+AGG | + | chr4.4:83696399-83696418 | None:intergenic | 50.0% | |
| ATCACCCTTGTTGAGCACCT+TGG | + | chr4.4:83697009-83697028 | None:intergenic | 50.0% | |
| CAAAAGTCTTGGAGAGGGCT+AGG | + | chr4.4:83696413-83696432 | None:intergenic | 50.0% | |
| GGGAATGCCTCTAATGCACT+AGG | - | chr4.4:83696783-83696802 | MS.gene89773:CDS | 50.0% | |
| TGAGCACCTTGGTAAAGAGC+CGG | + | chr4.4:83696998-83697017 | None:intergenic | 50.0% | |
| ! | CAACAACCGGCTCTTTACCA+AGG | - | chr4.4:83696989-83697008 | MS.gene89773:intron | 50.0% |
| !!! | CGCGTTGATTTTGCGCCTAA+GGG | - | chr4.4:83696873-83696892 | MS.gene89773:intron | 50.0% |
| !!! | TCGCGTTGATTTTGCGCCTA+AGG | - | chr4.4:83696872-83696891 | MS.gene89773:CDS | 50.0% |
| ! | GGATCTCTGTTCCTCTAGGG+TGG | + | chr4.4:83696917-83696936 | None:intergenic | 55.0% |
| ! | GGCAACGCTGTTGCTATTGC+TGG | - | chr4.4:83697080-83697099 | MS.gene89773:intron | 55.0% |
| !! | CTCTAGGGTGGATGTGAGGT+GGG | + | chr4.4:83696905-83696924 | None:intergenic | 55.0% |
| !! | GTTCCTCTAGGGTGGATGTG+AGG | + | chr4.4:83696909-83696928 | None:intergenic | 55.0% |
| CCACCTCACATCCACCCTAG+AGG | - | chr4.4:83696903-83696922 | MS.gene89773:intron | 60.0% | |
| !! | CCTCTAGGGTGGATGTGAGG+TGG | + | chr4.4:83696906-83696925 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.4 | gene | 83696344 | 83697256 | 83696344 | ID=MS.gene89773 |
| chr4.4 | mRNA | 83696344 | 83697256 | 83696344 | ID=MS.gene89773.t1;Parent=MS.gene89773 |
| chr4.4 | exon | 83697139 | 83697256 | 83697139 | ID=MS.gene89773.t1.exon1;Parent=MS.gene89773.t1 |
| chr4.4 | CDS | 83697139 | 83697256 | 83697139 | ID=cds.MS.gene89773.t1;Parent=MS.gene89773.t1 |
| chr4.4 | exon | 83696344 | 83696891 | 83696344 | ID=MS.gene89773.t1.exon2;Parent=MS.gene89773.t1 |
| chr4.4 | CDS | 83696344 | 83696891 | 83696344 | ID=cds.MS.gene89773.t1;Parent=MS.gene89773.t1 |
| Gene Sequence |
| Protein sequence |
