Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene50786.t1 | XP_003604729.1 | 98.6 | 221 | 3 | 0 | 1 | 221 | 1 | 221 | 1.30E-118 | 435.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene50786.t1 | Q9SFF9 | 64.6 | 223 | 71 | 4 | 6 | 221 | 7 | 228 | 2.8e-72 | 273.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene50786.t1 | G7JQ50 | 98.6 | 221 | 3 | 0 | 1 | 221 | 1 | 221 | 9.6e-119 | 435.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene04932 | MS.gene50786 | 0.812696 | 3.72E-51 | -1.69E-46 |
| MS.gene049549 | MS.gene50786 | 0.813655 | 2.29E-51 | -1.69E-46 |
| MS.gene049634 | MS.gene50786 | 0.821976 | 3.03E-53 | -1.69E-46 |
| MS.gene050096 | MS.gene50786 | 0.807207 | 5.66E-50 | -1.69E-46 |
| MS.gene050593 | MS.gene50786 | -0.80115 | 1.03E-48 | -1.69E-46 |
| MS.gene050647 | MS.gene50786 | 0.804487 | 2.11E-49 | -1.69E-46 |
| MS.gene050670 | MS.gene50786 | -0.816756 | 4.69E-52 | -1.69E-46 |
| MS.gene05079 | MS.gene50786 | 0.804895 | 1.73E-49 | -1.69E-46 |
| MS.gene050809 | MS.gene50786 | 0.820018 | 8.56E-53 | -1.69E-46 |
| MS.gene050971 | MS.gene50786 | -0.81387 | 2.06E-51 | -1.69E-46 |
| MS.gene051131 | MS.gene50786 | 0.811067 | 8.43E-51 | -1.69E-46 |
| MS.gene051158 | MS.gene50786 | 0.815476 | 9.07E-52 | -1.69E-46 |
| MS.gene051632 | MS.gene50786 | 0.800282 | 1.55E-48 | -1.69E-46 |
| MS.gene051874 | MS.gene50786 | -0.804254 | 2.36E-49 | -1.69E-46 |
| MS.gene052211 | MS.gene50786 | 0.806631 | 7.49E-50 | -1.69E-46 |
| MS.gene05240 | MS.gene50786 | 0.841765 | 3.90E-58 | -1.69E-46 |
| MS.gene05244 | MS.gene50786 | 0.814837 | 1.26E-51 | -1.69E-46 |
| MS.gene052606 | MS.gene50786 | 0.801682 | 8.03E-49 | -1.69E-46 |
| MS.gene052702 | MS.gene50786 | 0.839076 | 1.97E-57 | -1.69E-46 |
| MS.gene053031 | MS.gene50786 | 0.855384 | 6.54E-62 | -1.69E-46 |
| MS.gene053033 | MS.gene50786 | 0.823086 | 1.67E-53 | -1.69E-46 |
| MS.gene053403 | MS.gene50786 | 0.800148 | 1.65E-48 | -1.69E-46 |
| MS.gene053406 | MS.gene50786 | 0.821669 | 3.57E-53 | -1.69E-46 |
| MS.gene053420 | MS.gene50786 | 0.807364 | 5.24E-50 | -1.69E-46 |
| MS.gene053912 | MS.gene50786 | -0.817924 | 2.56E-52 | -1.69E-46 |
| MS.gene054181 | MS.gene50786 | 0.852644 | 4.03E-61 | -1.69E-46 |
| MS.gene054277 | MS.gene50786 | 0.811547 | 6.63E-51 | -1.69E-46 |
| MS.gene054290 | MS.gene50786 | 0.854509 | 1.17E-61 | -1.69E-46 |
| MS.gene054742 | MS.gene50786 | 0.83019 | 3.38E-55 | -1.69E-46 |
| MS.gene05483 | MS.gene50786 | 0.824866 | 6.40E-54 | -1.69E-46 |
| MS.gene054884 | MS.gene50786 | 0.82517 | 5.43E-54 | -1.69E-46 |
| MS.gene055158 | MS.gene50786 | 0.802809 | 4.70E-49 | -1.69E-46 |
| MS.gene055601 | MS.gene50786 | 0.814229 | 1.71E-51 | -1.69E-46 |
| MS.gene055741 | MS.gene50786 | -0.811727 | 6.06E-51 | -1.69E-46 |
| MS.gene055744 | MS.gene50786 | -0.812066 | 5.11E-51 | -1.69E-46 |
| MS.gene055959 | MS.gene50786 | 0.81438 | 1.59E-51 | -1.69E-46 |
| MS.gene056511 | MS.gene50786 | -0.802038 | 6.78E-49 | -1.69E-46 |
| MS.gene056590 | MS.gene50786 | 0.829305 | 5.55E-55 | -1.69E-46 |
| MS.gene056591 | MS.gene50786 | 0.827982 | 1.16E-54 | -1.69E-46 |
| MS.gene056697 | MS.gene50786 | 0.813819 | 2.11E-51 | -1.69E-46 |
| MS.gene056856 | MS.gene50786 | 0.816659 | 4.93E-52 | -1.69E-46 |
| MS.gene056899 | MS.gene50786 | 0.800961 | 1.13E-48 | -1.69E-46 |
| MS.gene056920 | MS.gene50786 | 0.813481 | 2.50E-51 | -1.69E-46 |
| MS.gene057261 | MS.gene50786 | 0.804109 | 2.53E-49 | -1.69E-46 |
| MS.gene057544 | MS.gene50786 | 0.841365 | 4.97E-58 | -1.69E-46 |
| MS.gene057734 | MS.gene50786 | -0.802321 | 5.93E-49 | -1.69E-46 |
| MS.gene058067 | MS.gene50786 | 0.802828 | 4.66E-49 | -1.69E-46 |
| MS.gene058158 | MS.gene50786 | 0.808864 | 2.51E-50 | -1.69E-46 |
| MS.gene058218 | MS.gene50786 | 0.818777 | 1.64E-52 | -1.69E-46 |
| MS.gene058838 | MS.gene50786 | -0.800238 | 1.58E-48 | -1.69E-46 |
| MS.gene058928 | MS.gene50786 | -0.804142 | 2.49E-49 | -1.69E-46 |
| MS.gene059294 | MS.gene50786 | -0.803639 | 3.17E-49 | -1.69E-46 |
| MS.gene059402 | MS.gene50786 | 0.864691 | 1.01E-64 | -1.69E-46 |
| MS.gene059953 | MS.gene50786 | 0.825889 | 3.66E-54 | -1.69E-46 |
| MS.gene059955 | MS.gene50786 | 0.841512 | 4.54E-58 | -1.69E-46 |
| MS.gene060087 | MS.gene50786 | 0.812074 | 5.09E-51 | -1.69E-46 |
| MS.gene060405 | MS.gene50786 | 0.814684 | 1.36E-51 | -1.69E-46 |
PPI:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene50786.t1 | MTR_5g046410 | 98.643 | 221 | 3 | 0 | 1 | 221 | 1 | 221 | 1.25e-159 | 440 |
| MS.gene50786.t1 | MTR_5g046430 | 98.643 | 221 | 3 | 0 | 1 | 221 | 1 | 221 | 1.25e-159 | 440 |
| MS.gene50786.t1 | MTR_4g017030 | 98.643 | 221 | 3 | 0 | 1 | 221 | 1 | 221 | 1.25e-159 | 440 |
| MS.gene50786.t1 | MTR_4g017050 | 98.190 | 221 | 4 | 0 | 1 | 221 | 1 | 221 | 3.40e-159 | 439 |
| MS.gene50786.t1 | MTR_2g019250 | 97.285 | 221 | 6 | 0 | 1 | 221 | 1 | 221 | 9.33e-159 | 438 |
| MS.gene50786.t1 | MTR_4g017040 | 96.380 | 221 | 8 | 0 | 1 | 221 | 1 | 221 | 9.89e-157 | 433 |
| MS.gene50786.t1 | MTR_1g079490 | 79.730 | 222 | 44 | 1 | 1 | 221 | 1 | 222 | 3.28e-128 | 361 |
| MS.gene50786.t1 | MTR_6g005340 | 77.064 | 218 | 48 | 2 | 4 | 221 | 5 | 220 | 9.98e-117 | 332 |
| MS.gene50786.t1 | MTR_6g005330 | 76.577 | 222 | 49 | 3 | 1 | 221 | 1 | 220 | 1.24e-116 | 332 |
| MS.gene50786.t1 | MTR_6g005360 | 74.661 | 221 | 55 | 1 | 1 | 221 | 1 | 220 | 1.55e-116 | 331 |
| MS.gene50786.t1 | MTR_6g005310 | 76.959 | 217 | 48 | 2 | 4 | 220 | 5 | 219 | 3.64e-116 | 330 |
| MS.gene50786.t1 | MTR_6g005350 | 63.014 | 219 | 78 | 3 | 3 | 221 | 4 | 219 | 7.29e-89 | 261 |
| MS.gene50786.t1 | MTR_6g005380 | 60.577 | 208 | 82 | 0 | 1 | 208 | 1 | 208 | 4.52e-87 | 256 |
| MS.gene50786.t1 | MTR_1g023770 | 58.525 | 217 | 79 | 3 | 1 | 215 | 1 | 208 | 1.72e-80 | 239 |
| MS.gene50786.t1 | MTR_2g030855 | 60.000 | 200 | 70 | 4 | 19 | 215 | 19 | 211 | 1.09e-77 | 233 |
| MS.gene50786.t1 | MTR_2g031270 | 59.204 | 201 | 71 | 5 | 19 | 215 | 19 | 212 | 8.47e-73 | 220 |
| MS.gene50786.t1 | MTR_2g030895 | 63.584 | 173 | 57 | 4 | 47 | 215 | 7 | 177 | 6.78e-71 | 214 |
| MS.gene50786.t1 | MTR_2g030865 | 63.006 | 173 | 58 | 4 | 47 | 215 | 7 | 177 | 6.17e-69 | 209 |
| MS.gene50786.t1 | MTR_1g085500 | 46.479 | 213 | 107 | 3 | 5 | 215 | 6 | 213 | 4.87e-61 | 190 |
| MS.gene50786.t1 | MTR_1g085140 | 46.000 | 200 | 101 | 3 | 18 | 215 | 20 | 214 | 1.07e-53 | 172 |
| MS.gene50786.t1 | MTR_7g111240 | 46.701 | 197 | 98 | 3 | 21 | 215 | 19 | 210 | 1.37e-51 | 166 |
| MS.gene50786.t1 | MTR_2g031300 | 53.801 | 171 | 54 | 4 | 47 | 214 | 7 | 155 | 4.97e-51 | 163 |
| MS.gene50786.t1 | MTR_7g111240 | 46.701 | 197 | 95 | 3 | 21 | 215 | 19 | 207 | 2.67e-50 | 163 |
| MS.gene50786.t1 | MTR_5g036570 | 45.455 | 198 | 100 | 4 | 21 | 215 | 26 | 218 | 2.75e-49 | 160 |
| MS.gene50786.t1 | MTR_1g112200 | 41.827 | 208 | 89 | 7 | 19 | 215 | 20 | 206 | 6.13e-44 | 146 |
| MS.gene50786.t1 | MTR_2g041550 | 43.256 | 215 | 108 | 6 | 1 | 213 | 1 | 203 | 2.24e-42 | 142 |
| MS.gene50786.t1 | MTR_1g060120 | 37.104 | 221 | 127 | 5 | 2 | 215 | 5 | 220 | 4.98e-42 | 142 |
| MS.gene50786.t1 | MTR_2g041570 | 38.498 | 213 | 114 | 5 | 4 | 214 | 7 | 204 | 1.68e-38 | 132 |
| MS.gene50786.t1 | MTR_2g041580 | 38.679 | 212 | 113 | 5 | 4 | 213 | 7 | 203 | 2.00e-38 | 132 |
| MS.gene50786.t1 | MTR_8g007300 | 38.532 | 218 | 118 | 5 | 4 | 219 | 11 | 214 | 3.60e-36 | 127 |
| MS.gene50786.t1 | MTR_8g020590 | 37.963 | 216 | 117 | 6 | 1 | 214 | 2 | 202 | 2.51e-34 | 122 |
| MS.gene50786.t1 | MTR_8g020750 | 39.086 | 197 | 100 | 5 | 1 | 190 | 1 | 184 | 6.37e-34 | 121 |
| MS.gene50786.t1 | MTR_8g020630 | 39.779 | 181 | 96 | 5 | 1 | 179 | 1 | 170 | 3.11e-33 | 119 |
| MS.gene50786.t1 | MTR_3g019710 | 40.201 | 199 | 105 | 6 | 1 | 197 | 1 | 187 | 3.35e-33 | 119 |
| MS.gene50786.t1 | MTR_2g036120 | 37.441 | 211 | 116 | 6 | 1 | 206 | 1 | 200 | 2.20e-31 | 114 |
| MS.gene50786.t1 | MTR_8g020650 | 34.562 | 217 | 127 | 6 | 1 | 215 | 1 | 204 | 4.43e-30 | 110 |
| MS.gene50786.t1 | MTR_0284s0010 | 37.915 | 211 | 115 | 6 | 1 | 206 | 1 | 200 | 1.20e-29 | 110 |
| MS.gene50786.t1 | MTR_8g020770 | 40.782 | 179 | 94 | 4 | 1 | 176 | 1 | 170 | 1.29e-29 | 110 |
| MS.gene50786.t1 | MTR_8g020670 | 34.101 | 217 | 128 | 6 | 1 | 215 | 1 | 204 | 1.93e-29 | 109 |
| MS.gene50786.t1 | MTR_2g044040 | 37.989 | 179 | 98 | 5 | 1 | 177 | 1 | 168 | 3.37e-29 | 108 |
| MS.gene50786.t1 | MTR_3g019650 | 37.811 | 201 | 106 | 7 | 1 | 197 | 1 | 186 | 7.00e-29 | 107 |
| MS.gene50786.t1 | MTR_3g019680 | 37.811 | 201 | 106 | 7 | 1 | 197 | 1 | 186 | 7.30e-29 | 107 |
| MS.gene50786.t1 | MTR_2g086640 | 34.101 | 217 | 117 | 7 | 2 | 214 | 7 | 201 | 2.57e-28 | 106 |
| MS.gene50786.t1 | MTR_2g045100 | 36.493 | 211 | 118 | 6 | 1 | 206 | 1 | 200 | 2.90e-28 | 106 |
| MS.gene50786.t1 | MTR_5g031460 | 35.238 | 210 | 122 | 5 | 1 | 206 | 1 | 200 | 2.01e-27 | 104 |
| MS.gene50786.t1 | MTR_3g096330 | 38.418 | 177 | 103 | 3 | 5 | 179 | 560 | 732 | 2.30e-27 | 109 |
| MS.gene50786.t1 | MTR_4g052770 | 34.101 | 217 | 116 | 7 | 3 | 214 | 9 | 203 | 2.72e-27 | 103 |
| MS.gene50786.t1 | MTR_4g052780 | 36.000 | 200 | 102 | 6 | 20 | 214 | 25 | 203 | 2.87e-27 | 103 |
| MS.gene50786.t1 | MTR_2g086620 | 41.985 | 131 | 70 | 3 | 85 | 214 | 77 | 202 | 3.89e-27 | 103 |
| MS.gene50786.t1 | MTR_2g086630 | 41.221 | 131 | 71 | 3 | 85 | 214 | 77 | 202 | 1.08e-26 | 102 |
| MS.gene50786.t1 | MTR_8g020760 | 35.023 | 217 | 128 | 6 | 1 | 215 | 1 | 206 | 2.45e-26 | 101 |
| MS.gene50786.t1 | MTR_8g020610 | 33.971 | 209 | 127 | 6 | 7 | 213 | 1 | 200 | 1.04e-25 | 99.8 |
| MS.gene50786.t1 | MTR_7g011340 | 37.097 | 186 | 105 | 5 | 26 | 206 | 22 | 200 | 4.31e-24 | 95.5 |
| MS.gene50786.t1 | MTR_4g010340 | 36.782 | 174 | 102 | 4 | 43 | 215 | 34 | 200 | 4.87e-24 | 95.1 |
| MS.gene50786.t1 | MTR_8g020763 | 36.095 | 169 | 99 | 3 | 43 | 206 | 17 | 181 | 3.01e-23 | 92.8 |
| MS.gene50786.t1 | MTR_3g073170 | 35.484 | 186 | 104 | 6 | 27 | 206 | 26 | 201 | 9.48e-23 | 92.0 |
| MS.gene50786.t1 | MTR_2g019780 | 33.796 | 216 | 125 | 8 | 3 | 215 | 7 | 207 | 1.08e-22 | 92.0 |
| MS.gene50786.t1 | MTR_3g019810 | 34.146 | 205 | 113 | 9 | 1 | 202 | 107 | 292 | 4.47e-19 | 84.0 |
| MS.gene50786.t1 | MTR_2g030915 | 47.368 | 76 | 25 | 1 | 93 | 168 | 1 | 61 | 5.23e-17 | 73.9 |
| MS.gene50786.t1 | MTR_4g027415 | 38.281 | 128 | 70 | 4 | 26 | 151 | 22 | 142 | 2.96e-16 | 73.2 |
| MS.gene50786.t1 | MTR_2g072560 | 36.885 | 122 | 68 | 4 | 1 | 120 | 1 | 115 | 3.68e-13 | 65.1 |
| MS.gene50786.t1 | MTR_3g019610 | 38.393 | 112 | 60 | 4 | 1 | 110 | 1 | 105 | 7.12e-11 | 57.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene50786.t1 | AT3G05950 | 64.000 | 225 | 73 | 4 | 4 | 221 | 5 | 228 | 3.50e-94 | 275 |
| MS.gene50786.t1 | AT5G39110 | 63.981 | 211 | 74 | 1 | 7 | 215 | 9 | 219 | 1.72e-92 | 270 |
| MS.gene50786.t1 | AT5G39150 | 62.844 | 218 | 78 | 2 | 1 | 215 | 1 | 218 | 2.07e-92 | 270 |
| MS.gene50786.t1 | AT5G39180 | 62.844 | 218 | 78 | 2 | 1 | 215 | 1 | 218 | 5.03e-92 | 269 |
| MS.gene50786.t1 | AT5G39120 | 63.981 | 211 | 73 | 2 | 7 | 215 | 9 | 218 | 5.09e-92 | 269 |
| MS.gene50786.t1 | AT5G39160 | 63.470 | 219 | 75 | 3 | 1 | 215 | 1 | 218 | 1.45e-90 | 266 |
| MS.gene50786.t1 | AT5G39190 | 63.470 | 219 | 75 | 3 | 1 | 215 | 1 | 218 | 1.74e-90 | 265 |
| MS.gene50786.t1 | AT5G39130 | 64.115 | 209 | 72 | 2 | 9 | 215 | 11 | 218 | 6.68e-90 | 264 |
| MS.gene50786.t1 | AT4G14630 | 61.187 | 219 | 81 | 2 | 1 | 215 | 3 | 221 | 3.95e-88 | 259 |
| MS.gene50786.t1 | AT5G39160 | 61.187 | 219 | 76 | 3 | 1 | 215 | 1 | 214 | 9.31e-86 | 253 |
| MS.gene50786.t1 | AT3G04200 | 59.535 | 215 | 84 | 3 | 1 | 213 | 6 | 219 | 1.25e-82 | 246 |
| MS.gene50786.t1 | AT5G38910 | 60.455 | 220 | 80 | 4 | 1 | 215 | 1 | 218 | 1.73e-79 | 238 |
| MS.gene50786.t1 | AT5G39190 | 57.604 | 217 | 69 | 2 | 1 | 215 | 1 | 196 | 3.05e-78 | 233 |
| MS.gene50786.t1 | AT5G38960 | 60.891 | 202 | 75 | 3 | 17 | 215 | 21 | 221 | 4.43e-78 | 234 |
| MS.gene50786.t1 | AT5G39160 | 57.143 | 217 | 70 | 2 | 1 | 215 | 1 | 196 | 7.00e-78 | 233 |
| MS.gene50786.t1 | AT5G38940 | 60.406 | 197 | 75 | 2 | 21 | 215 | 25 | 220 | 1.68e-77 | 233 |
| MS.gene50786.t1 | AT5G38930 | 61.616 | 198 | 73 | 2 | 20 | 215 | 24 | 220 | 1.89e-77 | 232 |
| MS.gene50786.t1 | AT5G38940 | 60.406 | 197 | 75 | 2 | 21 | 215 | 49 | 244 | 2.41e-77 | 233 |
| MS.gene50786.t1 | AT3G04170 | 55.556 | 207 | 86 | 3 | 10 | 214 | 14 | 216 | 3.72e-73 | 221 |
| MS.gene50786.t1 | AT3G04190 | 55.224 | 201 | 87 | 2 | 15 | 213 | 19 | 218 | 2.46e-72 | 219 |
| MS.gene50786.t1 | AT3G04150 | 52.995 | 217 | 96 | 3 | 3 | 214 | 4 | 219 | 3.63e-71 | 216 |
| MS.gene50786.t1 | AT3G04180 | 53.731 | 201 | 90 | 2 | 15 | 213 | 19 | 218 | 2.83e-69 | 211 |
| MS.gene50786.t1 | AT3G04150 | 50.218 | 229 | 97 | 3 | 3 | 214 | 4 | 232 | 2.89e-69 | 212 |
| MS.gene50786.t1 | AT5G38910 | 49.545 | 220 | 67 | 4 | 1 | 215 | 1 | 181 | 6.77e-56 | 176 |
| MS.gene50786.t1 | AT1G02335 | 45.455 | 198 | 101 | 3 | 20 | 215 | 22 | 214 | 7.17e-54 | 172 |
| MS.gene50786.t1 | AT1G09560 | 44.776 | 201 | 104 | 3 | 17 | 215 | 19 | 214 | 7.16e-53 | 169 |
| MS.gene50786.t1 | AT3G62020 | 45.070 | 213 | 108 | 5 | 6 | 215 | 8 | 214 | 1.09e-52 | 169 |
| MS.gene50786.t1 | AT3G05930 | 46.798 | 203 | 99 | 4 | 3 | 202 | 5 | 201 | 2.36e-52 | 168 |
| MS.gene50786.t1 | AT1G18970 | 46.000 | 200 | 99 | 4 | 18 | 215 | 25 | 217 | 3.29e-51 | 166 |
| MS.gene50786.t1 | AT5G26700 | 46.354 | 192 | 89 | 5 | 26 | 213 | 25 | 206 | 5.39e-50 | 162 |
| MS.gene50786.t1 | AT1G18980 | 45.500 | 200 | 100 | 4 | 18 | 215 | 25 | 217 | 6.38e-49 | 159 |
| MS.gene50786.t1 | AT3G62020 | 46.111 | 180 | 91 | 3 | 39 | 215 | 9 | 185 | 8.29e-47 | 153 |
| MS.gene50786.t1 | AT3G10080 | 40.394 | 203 | 112 | 5 | 17 | 215 | 21 | 218 | 6.98e-45 | 149 |
| MS.gene50786.t1 | AT3G10080 | 40.394 | 203 | 112 | 5 | 17 | 215 | 92 | 289 | 3.40e-44 | 150 |
| MS.gene50786.t1 | AT1G10460 | 41.709 | 199 | 108 | 5 | 21 | 214 | 18 | 213 | 3.41e-44 | 147 |
| MS.gene50786.t1 | AT5G20630 | 42.381 | 210 | 109 | 6 | 1 | 208 | 1 | 200 | 1.99e-42 | 142 |
| MS.gene50786.t1 | AT5G61750 | 41.622 | 185 | 103 | 2 | 4 | 186 | 1 | 182 | 1.50e-40 | 138 |
| MS.gene50786.t1 | AT1G72610 | 40.526 | 190 | 104 | 6 | 26 | 213 | 19 | 201 | 1.43e-33 | 120 |
| MS.gene50786.t1 | AT1G74820 | 38.144 | 194 | 111 | 4 | 24 | 215 | 38 | 224 | 1.53e-32 | 117 |
| MS.gene50786.t1 | AT5G38950 | 54.167 | 72 | 33 | 0 | 145 | 216 | 2 | 73 | 1.39e-18 | 78.2 |
| MS.gene50786.t1 | AT5G39100 | 70.000 | 50 | 15 | 0 | 7 | 56 | 9 | 58 | 1.23e-16 | 71.6 |
Find 63 sgRNAs with CRISPR-Local
Find 73 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TATATACATACCACCATCTT+TGG | 0.255130 | 4.1:-80445170 | None:intergenic |
| TTTCAACTGAATGTTGGATA+TGG | 0.274546 | 4.1:+80445747 | MS.gene50786:CDS |
| CCTTGTTAGCATCTTGGCTT+TGG | 0.311083 | 4.1:+80445081 | MS.gene50786:CDS |
| TGAAAATGAATTAGACCAAT+TGG | 0.315504 | 4.1:-80445729 | None:intergenic |
| CTTGTCAACTTGAAAAGCTT+TGG | 0.328967 | 4.1:-80445874 | None:intergenic |
| TTGAGATCCTAGTGCATTAG+AGG | 0.333822 | 4.1:-80445478 | None:intergenic |
| GAGTGCCTTCGAGTACTATA+AGG | 0.397511 | 4.1:-80445623 | None:intergenic |
| TAACACGCTTGGTATCTCTT+TGG | 0.399374 | 4.1:+80445536 | MS.gene50786:CDS |
| ATACTTCCTTGTTAGCATCT+TGG | 0.401215 | 4.1:+80445075 | MS.gene50786:CDS |
| GATGTCTTTGTGTTCCCAAT+TGG | 0.401977 | 4.1:+80445714 | MS.gene50786:CDS |
| TTCTTCAAACATGTTGAAGC+TGG | 0.402098 | 4.1:+80445450 | MS.gene50786:CDS |
| ATATACATACCACCATCTTT+GGG | 0.405165 | 4.1:-80445169 | None:intergenic |
| CTCTAGGGTGGATGTGAGGT+GGG | 0.411548 | 4.1:-80445590 | None:intergenic |
| TAAAGAGCCGGTTGTTGTCT+TGG | 0.425026 | 4.1:-80445671 | None:intergenic |
| GGCAACGCGGTTGCTATCGC+TGG | 0.429748 | 4.1:+80445768 | MS.gene50786:CDS |
| CAAAAGTCTTGGAGAGGGCT+GGG | 0.429933 | 4.1:-80445130 | None:intergenic |
| CTCGAAGGCACTCTTTATGT+TGG | 0.443268 | 4.1:+80445633 | MS.gene50786:CDS |
| TCTTCAGCTTTAACAAGTGC+GGG | 0.444792 | 4.1:-80445426 | None:intergenic |
| GTCACTGTAGACCAACTATT+CGG | 0.448530 | 4.1:+80445510 | MS.gene50786:CDS |
| CATCAAACCAAGACAACAAC+CGG | 0.452231 | 4.1:+80445664 | MS.gene50786:CDS |
| GAAAATGAATTAGACCAATT+GGG | 0.461091 | 4.1:-80445728 | None:intergenic |
| ATAAGGATCTCTGTTCCTCT+AGG | 0.468428 | 4.1:-80445606 | None:intergenic |
| ACAAAAGTCTTGGAGAGGGC+TGG | 0.468953 | 4.1:-80445131 | None:intergenic |
| TTTGCAACGGTGATAACTCC+TGG | 0.470922 | 4.1:-80445807 | None:intergenic |
| TAATTTGCAGTATTTGTGAA+TGG | 0.482769 | 4.1:+80445387 | MS.gene50786:intron |
| TGATTGCAACACAAAAGTCT+TGG | 0.490396 | 4.1:-80445141 | None:intergenic |
| CCTCTAGGGTGGATGTGAGG+TGG | 0.496940 | 4.1:-80445591 | None:intergenic |
| TCTTCAAACATGTTGAAGCT+GGG | 0.501315 | 4.1:+80445451 | MS.gene50786:CDS |
| CTATTCGGACTTAACACGCT+TGG | 0.510323 | 4.1:+80445525 | MS.gene50786:CDS |
| AGAACTTCGTCGGAAATAAG+AGG | 0.511108 | 4.1:-80445849 | None:intergenic |
| ATTATCTTCAAAAGCAGTCC+TGG | 0.511761 | 4.1:+80445907 | MS.gene50786:CDS |
| AATTTGCAGTATTTGTGAAT+GGG | 0.515890 | 4.1:+80445388 | MS.gene50786:intron |
| AGGGCTGGGGTCAGAAGCAA+AGG | 0.530574 | 4.1:-80445116 | None:intergenic |
| GCGTGTTAAGTCCGAATAGT+TGG | 0.534502 | 4.1:-80445521 | None:intergenic |
| CAACTAGTTGTTGTCATACC+AGG | 0.537861 | 4.1:-80445925 | None:intergenic |
| ATCTTCAGCTTTAACAAGTG+CGG | 0.543612 | 4.1:-80445427 | None:intergenic |
| CTTTACCAAGGTGCTCAACA+AGG | 0.544491 | 4.1:+80445689 | MS.gene50786:CDS |
| GTCAGAAGCAAAGGCAAGAG+AGG | 0.546110 | 4.1:-80445107 | None:intergenic |
| TGAGGTGGGTTTAAACCCTT+AGG | 0.548128 | 4.1:-80445576 | None:intergenic |
| GCAATCAAAGACCCCAAAGA+TGG | 0.554146 | 4.1:+80445157 | MS.gene50786:CDS |
| AGCTTTGGTAAGAACTTCGT+CGG | 0.555884 | 4.1:-80445859 | None:intergenic |
| CCAAAGCCAAGATGCTAACA+AGG | 0.556137 | 4.1:-80445081 | None:intergenic |
| AAAAGTCTTGGAGAGGGCTG+GGG | 0.564168 | 4.1:-80445129 | None:intergenic |
| AATAGTTGGTCTACAGTGAC+CGG | 0.566317 | 4.1:-80445507 | None:intergenic |
| ATCACCCTTGTTGAGCACCT+TGG | 0.571487 | 4.1:-80445694 | None:intergenic |
| TAAGGATCTCTGTTCCTCTA+GGG | 0.571738 | 4.1:-80445605 | None:intergenic |
| GGACTTAGCAGTCAAAATCC+AGG | 0.578792 | 4.1:+80445789 | MS.gene50786:CDS |
| TGAGCACCTTGGTAAAGAGC+CGG | 0.579420 | 4.1:-80445683 | None:intergenic |
| GGGAATGCCTCTAATGCACT+AGG | 0.589101 | 4.1:+80445471 | MS.gene50786:CDS |
| GGATCTCTGTTCCTCTAGGG+TGG | 0.590427 | 4.1:-80445602 | None:intergenic |
| TTTAAACAAAGCATTTGCAA+CGG | 0.590900 | 4.1:-80445820 | None:intergenic |
| ACTAGGATCTCAAGTGACTC+CGG | 0.624129 | 4.1:+80445488 | MS.gene50786:CDS |
| ATCAAAGACCCCAAAGATGG+TGG | 0.628410 | 4.1:+80445160 | MS.gene50786:CDS |
| CAACACAAAAGTCTTGGAGA+GGG | 0.634245 | 4.1:-80445135 | None:intergenic |
| TATACATACCACCATCTTTG+GGG | 0.639620 | 4.1:-80445168 | None:intergenic |
| GTTCCTCTAGGGTGGATGTG+AGG | 0.650118 | 4.1:-80445594 | None:intergenic |
| GCAACACAAAAGTCTTGGAG+AGG | 0.651085 | 4.1:-80445136 | None:intergenic |
| CCACCTCACATCCACCCTAG+AGG | 0.660499 | 4.1:+80445591 | MS.gene50786:CDS |
| CTTCAGCTTTAACAAGTGCG+GGG | 0.662073 | 4.1:-80445425 | None:intergenic |
| GAGATCCTTATAGTACTCGA+AGG | 0.666965 | 4.1:+80445618 | MS.gene50786:CDS |
| TTTACCAAGGTGCTCAACAA+GGG | 0.669433 | 4.1:+80445690 | MS.gene50786:CDS |
| CAACAACCGGCTCTTTACCA+AGG | 0.674974 | 4.1:+80445677 | MS.gene50786:CDS |
| GAATGTTGGATATGGCAACG+CGG | 0.840401 | 4.1:+80445755 | MS.gene50786:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTAATTACAACTAAATTTTT+AGG | + | chr4.1:80445210-80445229 | MS.gene50786:intron | 10.0% |
| !! | TTTAAATATGCAAATATTAG+AGG | + | chr4.1:80445233-80445252 | MS.gene50786:intron | 15.0% |
| !! | GTAATTAACACTTAAAGTTA+AGG | - | chr4.1:80445198-80445217 | None:intergenic | 20.0% |
| !!! | CAATATAGAATCTTTTGTTT+TGG | + | chr4.1:80445275-80445294 | MS.gene50786:intron | 20.0% |
| ! | AATTTGCAGTATTTGTGAAT+GGG | + | chr4.1:80445388-80445407 | MS.gene50786:intron | 25.0% |
| ! | CAAAAGATTCTATATTGACA+AGG | - | chr4.1:80445272-80445291 | None:intergenic | 25.0% |
| ! | GAAAATGAATTAGACCAATT+GGG | - | chr4.1:80445731-80445750 | None:intergenic | 25.0% |
| ! | TGAAAATGAATTAGACCAAT+TGG | - | chr4.1:80445732-80445751 | None:intergenic | 25.0% |
| !! | ATTCATTTTCAACTGAATGT+TGG | + | chr4.1:80445741-80445760 | MS.gene50786:CDS | 25.0% |
| !! | TAATTTGCAGTATTTGTGAA+TGG | + | chr4.1:80445387-80445406 | MS.gene50786:intron | 25.0% |
| !! | TATGCAAATATTAGAGGTTT+TGG | + | chr4.1:80445239-80445258 | MS.gene50786:intron | 25.0% |
| !! | TTTAAACAAAGCATTTGCAA+CGG | - | chr4.1:80445823-80445842 | None:intergenic | 25.0% |
| !!! | TTTGGTCATGAATGTTTTTT+TGG | + | chr4.1:80445293-80445312 | MS.gene50786:intron | 25.0% |
| ATATACATACCACCATCTTT+GGG | - | chr4.1:80445172-80445191 | None:intergenic | 30.0% | |
| TATATACATACCACCATCTT+TGG | - | chr4.1:80445173-80445192 | None:intergenic | 30.0% | |
| TTTCAACTGAATGTTGGATA+TGG | + | chr4.1:80445747-80445766 | MS.gene50786:CDS | 30.0% | |
| ATACTTCCTTGTTAGCATCT+TGG | + | chr4.1:80445075-80445094 | MS.gene50786:CDS | 35.0% | |
| ATTATCTTCAAAAGCAGTCC+TGG | + | chr4.1:80445907-80445926 | MS.gene50786:CDS | 35.0% | |
| CTTGTCAACTTGAAAAGCTT+TGG | - | chr4.1:80445877-80445896 | None:intergenic | 35.0% | |
| TATACATACCACCATCTTTG+GGG | - | chr4.1:80445171-80445190 | None:intergenic | 35.0% | |
| TCTTCAAACATGTTGAAGCT+GGG | + | chr4.1:80445451-80445470 | MS.gene50786:CDS | 35.0% | |
| TGATTGCAACACAAAAGTCT+TGG | - | chr4.1:80445144-80445163 | None:intergenic | 35.0% | |
| TTCTTCAAACATGTTGAAGC+TGG | + | chr4.1:80445450-80445469 | MS.gene50786:CDS | 35.0% | |
| ! | ATCTTCAGCTTTAACAAGTG+CGG | - | chr4.1:80445430-80445449 | None:intergenic | 35.0% |
| !!! | GTTTTTTTGGTTAGCTAGCT+AGG | + | chr4.1:80445306-80445325 | MS.gene50786:intron | 35.0% |
| AGAACTTCGTCGGAAATAAG+AGG | - | chr4.1:80445852-80445871 | None:intergenic | 40.0% | |
| ATAAGGATCTCTGTTCCTCT+AGG | - | chr4.1:80445609-80445628 | None:intergenic | 40.0% | |
| CAACACAAAAGTCTTGGAGA+GGG | - | chr4.1:80445138-80445157 | None:intergenic | 40.0% | |
| CATCAAACCAAGACAACAAC+CGG | + | chr4.1:80445664-80445683 | MS.gene50786:CDS | 40.0% | |
| GAGATCCTTATAGTACTCGA+AGG | + | chr4.1:80445618-80445637 | MS.gene50786:CDS | 40.0% | |
| GATGTCTTTGTGTTCCCAAT+TGG | + | chr4.1:80445714-80445733 | MS.gene50786:CDS | 40.0% | |
| GTCACTGTAGACCAACTATT+CGG | + | chr4.1:80445510-80445529 | MS.gene50786:CDS | 40.0% | |
| TAACACGCTTGGTATCTCTT+TGG | + | chr4.1:80445536-80445555 | MS.gene50786:CDS | 40.0% | |
| TAAGGATCTCTGTTCCTCTA+GGG | - | chr4.1:80445608-80445627 | None:intergenic | 40.0% | |
| TTGAGATCCTAGTGCATTAG+AGG | - | chr4.1:80445481-80445500 | None:intergenic | 40.0% | |
| ! | AATAGTTGGTCTACAGTGAC+CGG | - | chr4.1:80445510-80445529 | None:intergenic | 40.0% |
| ! | AGCTTTGGTAAGAACTTCGT+CGG | - | chr4.1:80445862-80445881 | None:intergenic | 40.0% |
| ! | TCTTCAGCTTTAACAAGTGC+GGG | - | chr4.1:80445429-80445448 | None:intergenic | 40.0% |
| ! | TTTACCAAGGTGCTCAACAA+GGG | + | chr4.1:80445690-80445709 | MS.gene50786:CDS | 40.0% |
| ACTAGGATCTCAAGTGACTC+CGG | + | chr4.1:80445488-80445507 | MS.gene50786:CDS | 45.0% | |
| ATCAAAGACCCCAAAGATGG+TGG | + | chr4.1:80445160-80445179 | MS.gene50786:CDS | 45.0% | |
| CCAAAGCCAAGATGCTAACA+AGG | - | chr4.1:80445084-80445103 | None:intergenic | 45.0% | |
| CCTTGTTAGCATCTTGGCTT+TGG | + | chr4.1:80445081-80445100 | MS.gene50786:CDS | 45.0% | |
| CTATTCGGACTTAACACGCT+TGG | + | chr4.1:80445525-80445544 | MS.gene50786:CDS | 45.0% | |
| GAATGTTGGATATGGCAACG+CGG | + | chr4.1:80445755-80445774 | MS.gene50786:CDS | 45.0% | |
| GAGTGCCTTCGAGTACTATA+AGG | - | chr4.1:80445626-80445645 | None:intergenic | 45.0% | |
| GCAACACAAAAGTCTTGGAG+AGG | - | chr4.1:80445139-80445158 | None:intergenic | 45.0% | |
| GCAATCAAAGACCCCAAAGA+TGG | + | chr4.1:80445157-80445176 | MS.gene50786:CDS | 45.0% | |
| GCGTGTTAAGTCCGAATAGT+TGG | - | chr4.1:80445524-80445543 | None:intergenic | 45.0% | |
| GGACTTAGCAGTCAAAATCC+AGG | + | chr4.1:80445789-80445808 | MS.gene50786:CDS | 45.0% | |
| TAAAGAGCCGGTTGTTGTCT+TGG | - | chr4.1:80445674-80445693 | None:intergenic | 45.0% | |
| TTTGCAACGGTGATAACTCC+TGG | - | chr4.1:80445810-80445829 | None:intergenic | 45.0% | |
| ! | CTTCAGCTTTAACAAGTGCG+GGG | - | chr4.1:80445428-80445447 | None:intergenic | 45.0% |
| ! | CTTTACCAAGGTGCTCAACA+AGG | + | chr4.1:80445689-80445708 | MS.gene50786:CDS | 45.0% |
| ! | TGAGGTGGGTTTAAACCCTT+AGG | - | chr4.1:80445579-80445598 | None:intergenic | 45.0% |
| !! | CTCGAAGGCACTCTTTATGT+TGG | + | chr4.1:80445633-80445652 | MS.gene50786:CDS | 45.0% |
| !!! | CGCGTTGATTTTGTGCCTAA+GGG | + | chr4.1:80445561-80445580 | MS.gene50786:CDS | 45.0% |
| !!! | TCGCGTTGATTTTGTGCCTA+AGG | + | chr4.1:80445560-80445579 | MS.gene50786:CDS | 45.0% |
| AAAAGTCTTGGAGAGGGCTG+GGG | - | chr4.1:80445132-80445151 | None:intergenic | 50.0% | |
| ACAAAAGTCTTGGAGAGGGC+TGG | - | chr4.1:80445134-80445153 | None:intergenic | 50.0% | |
| ATCACCCTTGTTGAGCACCT+TGG | - | chr4.1:80445697-80445716 | None:intergenic | 50.0% | |
| CAAAAGTCTTGGAGAGGGCT+GGG | - | chr4.1:80445133-80445152 | None:intergenic | 50.0% | |
| GGGAATGCCTCTAATGCACT+AGG | + | chr4.1:80445471-80445490 | MS.gene50786:CDS | 50.0% | |
| GTCAGAAGCAAAGGCAAGAG+AGG | - | chr4.1:80445110-80445129 | None:intergenic | 50.0% | |
| TGAGCACCTTGGTAAAGAGC+CGG | - | chr4.1:80445686-80445705 | None:intergenic | 50.0% | |
| ! | CAACAACCGGCTCTTTACCA+AGG | + | chr4.1:80445677-80445696 | MS.gene50786:CDS | 50.0% |
| ! | GGATCTCTGTTCCTCTAGGG+TGG | - | chr4.1:80445605-80445624 | None:intergenic | 55.0% |
| !! | CTCTAGGGTGGATGTGAGGT+GGG | - | chr4.1:80445593-80445612 | None:intergenic | 55.0% |
| !! | GTTCCTCTAGGGTGGATGTG+AGG | - | chr4.1:80445597-80445616 | None:intergenic | 55.0% |
| AGGGCTGGGGTCAGAAGCAA+AGG | - | chr4.1:80445119-80445138 | None:intergenic | 60.0% | |
| CCACCTCACATCCACCCTAG+AGG | + | chr4.1:80445591-80445610 | MS.gene50786:CDS | 60.0% | |
| !! | CCTCTAGGGTGGATGTGAGG+TGG | - | chr4.1:80445594-80445613 | None:intergenic | 60.0% |
| GGCAACGCGGTTGCTATCGC+TGG | + | chr4.1:80445768-80445787 | MS.gene50786:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.1 | gene | 80445064 | 80445944 | 80445064 | ID=MS.gene50786 |
| chr4.1 | mRNA | 80445064 | 80445944 | 80445064 | ID=MS.gene50786.t1;Parent=MS.gene50786 |
| chr4.1 | exon | 80445064 | 80445181 | 80445064 | ID=MS.gene50786.t1.exon1;Parent=MS.gene50786.t1 |
| chr4.1 | CDS | 80445064 | 80445181 | 80445064 | ID=cds.MS.gene50786.t1;Parent=MS.gene50786.t1 |
| chr4.1 | exon | 80445397 | 80445944 | 80445397 | ID=MS.gene50786.t1.exon2;Parent=MS.gene50786.t1 |
| chr4.1 | CDS | 80445397 | 80445944 | 80445397 | ID=cds.MS.gene50786.t1;Parent=MS.gene50786.t1 |
| Gene Sequence |
| Protein sequence |
