AlfalfaGEDB | MS.gene74887

M. sativa cultivar XinJiangDaYe / MS.gene74887

KEGG: -
GO: GO:0003674 GO:0005488 GO:0030145 GO:0043167 GO:0043169 GO:0045735 GO:0046872 GO:0046914
PFAM: PF00190.25

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene74887.t1	XP_003590904.1	78.8	222	1	1	1	176	1	222	2.20E-87	331.6

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene74887.t1	Q2QXJ4	57.2	222	45	3	4	175	6	227	1.2e-59	230.7

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene74887.t1	G7I5N4	78.8	222	1	1	1	176	1	222	1.6e-87	331.6

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049611	MS.gene74887	0.817696	2.88E-52	-1.69E-46
MS.gene049634	MS.gene74887	0.819133	1.36E-52	-1.69E-46
MS.gene050444	MS.gene74887	-0.802895	4.51E-49	-1.69E-46
MS.gene05079	MS.gene74887	0.841433	4.77E-58	-1.69E-46
MS.gene050809	MS.gene74887	0.85302	3.15E-61	-1.69E-46
MS.gene05104	MS.gene74887	0.819407	1.18E-52	-1.69E-46
MS.gene051138	MS.gene74887	0.800315	1.53E-48	-1.69E-46
MS.gene051228	MS.gene74887	-0.80927	2.06E-50	-1.69E-46
MS.gene051632	MS.gene74887	0.823949	1.05E-53	-1.69E-46
MS.gene052805	MS.gene74887	0.821761	3.40E-53	-1.69E-46

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PPI:

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Gene1	Gene2	Type
MS.gene032598	MS.gene74887	PPI
MS.gene032601	MS.gene74887	PPI
MS.gene053027	MS.gene74887	PPI
MS.gene053033	MS.gene74887	PPI
MS.gene056870	MS.gene74887	PPI
MS.gene74887	MS.gene032601	PPI
MS.gene74887	MS.gene022634	PPI
MS.gene74887	MS.gene99166	PPI
MS.gene74887	MS.gene005041	PPI
MS.gene74887	MS.gene82859	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene74887.t1	MTR_1g079490	78.829	222	1	1	1	176	1	222	1.58e-117	332
MS.gene74887.t1	MTR_5g046410	67.873	221	26	1	1	176	1	221	6.89e-101	290
MS.gene74887.t1	MTR_5g046430	67.873	221	26	1	1	176	1	221	6.89e-101	290
MS.gene74887.t1	MTR_4g017030	67.873	221	26	1	1	176	1	221	6.89e-101	290
MS.gene74887.t1	MTR_4g017050	67.873	221	26	1	1	176	1	221	7.86e-101	290
MS.gene74887.t1	MTR_4g017040	67.421	221	27	1	1	176	1	221	1.52e-100	289
MS.gene74887.t1	MTR_2g019250	66.516	221	29	1	1	176	1	221	1.14e-99	286
MS.gene74887.t1	MTR_6g005330	65.297	219	29	3	3	176	4	220	9.54e-92	266
MS.gene74887.t1	MTR_6g005360	65.138	218	29	3	4	176	5	220	3.96e-91	265
MS.gene74887.t1	MTR_6g005340	65.741	216	27	3	6	176	7	220	7.07e-91	264

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene74887.t1	AT5G39190	62.567	187	46	1	9	171	11	197	1.04e-76	228
MS.gene74887.t1	AT5G39160	62.567	187	46	1	9	171	11	197	1.08e-76	228
MS.gene74887.t1	AT3G05950	56.306	222	48	2	2	174	3	224	5.67e-76	227
MS.gene74887.t1	AT5G39160	57.073	205	46	1	9	171	11	215	1.42e-73	220
MS.gene74887.t1	AT5G39130	56.459	209	45	1	9	171	11	219	5.27e-73	219
MS.gene74887.t1	AT5G39150	53.521	213	52	1	6	171	7	219	2.51e-72	217
MS.gene74887.t1	AT5G39180	53.521	213	52	1	6	171	7	219	5.70e-72	216
MS.gene74887.t1	AT5G39160	55.502	209	47	1	9	171	11	219	7.83e-72	216
MS.gene74887.t1	AT5G39190	55.502	209	47	1	9	171	11	219	8.73e-72	216
MS.gene74887.t1	AT5G39120	55.172	203	44	1	16	171	17	219	9.64e-72	216

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Find 46 sgRNAs with CRISPR-Local

Find 74 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
ACAAAAGTCTTGCAATGGGC+TGG	0.433311	1.1:-59085205	None:intergenic
ACAAGAATCTCAGTACCTCG+AGG	0.695186	1.1:-59085731	None:intergenic
ACCATAGCAAATGCTGTGTT+TGG	0.345841	1.1:+59085944	MS.gene74887:CDS
ACGGTTATTGTCTTGATTCG+AGG	0.502878	1.1:-59085789	None:intergenic
ACTATCTTCAAAAGCAATTC+TGG	0.307062	1.1:+59086032	MS.gene74887:CDS
AGAACTTCCAAAGAAATTGG+TGG	0.547357	1.1:-59085974	None:intergenic
AGATGATGCTAAAGCCAATA+AGG	0.364373	1.1:-59085163	None:intergenic
ATATTAGGACTCAACACACT+TGG	0.605651	1.1:+59085650	MS.gene74887:intron
ATCAATGATACCAAAACTGG+TGG	0.616290	1.1:+59085234	MS.gene74887:CDS
ATCGCCTTTGTTCAATACTT+TGG	0.409827	1.1:-59085819	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ACTATCTTCAAAAGCAATTC+TGG	+	chr1.1:59086032-59086051	MS.gene74887:CDS	30.0%
ATCTAAACCACCAATTTCTT+TGG	+	chr1.1:59085967-59085986	MS.gene74887:CDS	30.0%
GATGTATTTGTGTTTCCAAT+TGG	+	chr1.1:59085839-59085858	MS.gene74887:CDS	30.0%
TTTATCCACTTGAAAAGCTT+TGG	-	chr1.1:59086002-59086021	None:intergenic	30.0%
AATATTTCATTAACCGCCAC+TGG	-	chr1.1:59085635-59085654	None:intergenic	35.0%
AGAACTTCCAAAGAAATTGG+TGG	-	chr1.1:59085977-59085996	None:intergenic	35.0%
AGATGATGCTAAAGCCAATA+AGG	-	chr1.1:59085166-59085185	None:intergenic	35.0%
ATATTAGGACTCAACACACT+TGG	+	chr1.1:59085650-59085669	MS.gene74887:intron	35.0%
ATCAATGATACCAAAACTGG+TGG	+	chr1.1:59085234-59085253	MS.gene74887:CDS	35.0%
ATCGCCTTTGTTCAATACTT+TGG	-	chr1.1:59085822-59085841	None:intergenic	35.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1.1	gene	59085138	59086069	59085138	ID=MS.gene74887
chr1.1	mRNA	59085138	59086069	59085138	ID=MS.gene74887.t1;Parent=MS.gene74887
chr1.1	exon	59085138	59085255	59085138	ID=MS.gene74887.t1.exon1;Parent=MS.gene74887.t1
chr1.1	CDS	59085138	59085255	59085138	ID=cds.MS.gene74887.t1;Parent=MS.gene74887.t1
chr1.1	exon	59085657	59086069	59085657	ID=MS.gene74887.t1.exon2;Parent=MS.gene74887.t1
chr1.1	CDS	59085657	59086069	59085657	ID=cds.MS.gene74887.t1;Parent=MS.gene74887.t1

Gene Sequence

>MS.gene74887

ATGGGAGTTTTTTACTTCATCGTTGCCTTATTGGCTTTAGCATCATCTGTTGGTTTTGCCTATGATCCCAGCCCATTGCAAGACTTTTGTGTTGCAATCAATGATACCAAAACTGGTGGTATATATTTGTTGTTCAATTGTTCAAAATAAATGAATACCTCCATGTTATTATAGTTTTTTGTGTATAAATGATTGCATATCTAAAACATGTGGTAAACTTGAGTATTTTATACACCTAAAATTATGGTAATTGATTTTTTATTTATTTATTTTTTGGTTAAATGATGATGAATTTTATGCGTCTATATTAACTAATTAGAAAGTGTCAAGAGTTTATTATATTAATCAAGTTTTCTTGTGATTTGGTTTTCTAATTTCCAGTGTTCGTGAATGGAAAATTTTGCAAAGATCCTAAGCTTGCAAATGCGGATGATTTCTTCTTTCAATGATTGGGACCCGGGAATACTTCAAATCCACTCGGATCTAAAGTGACTCCAGTGGCGGTTAATGAAATATTAGGACTCAACACACTTGGTATATCTTTGGCCCGCGTCGATTTTGCACCAAAAGGTCTAAATCCTCCTCACACTCACCCTCGAGGTACTGAGATTCTTGTAGTTTTGGAAGGTACGCTTTATGTTGGATTCGTTACCTCGAATCAAGACAATAACCGTCTCTTCACCAAAGTATTGAACAAAGGCGATGTATTTGTGTTTCCAATTGGTCTCATTCACTTCCAATTGAACGTTGGTTATGGGGAGGCTATTGCCATTGCTGGTCTTAGTAGCCAAAACCCTGGAGTGATTACCATAGCAAATGCTGTGTTTGGATCTAAACCACCAATTTCTTTGGAAGTTCTCACCAAAGCTTTTCAAGTGGATAAAAATGTAATCGACTATCTTCAAAAGCAATTCTGGTACAACAATAGTTAA

Protein sequence

>MS.gene74887.t1

MGVFYFIVALLALASSVGFAYDPSPLQDFCVAINDTKTGGLNTLGISLARVDFAPKGLNPPHTHPRGTEILVVLEGTLYVGFVTSNQDNNRLFTKVLNKGDVFVFPIGLIHFQLNVGYGEAIAIAGLSSQNPGVITIANAVFGSKPPISLEVLTKAFQVDKNVIDYLQKQFWYNNS