AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene036142

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene036142.t1 MTR_1g070385 96.259 294 11 0 1 294 1 294 0.0 585
MS.gene036142.t1 MTR_1g097840 43.111 225 128 0 57 281 69 293 5.85e-56 183
MS.gene036142.t1 MTR_7g010650 37.959 245 144 2 47 284 15 258 1.85e-53 176
MS.gene036142.t1 MTR_2g017590 42.326 215 123 1 62 275 36 250 2.92e-53 175
MS.gene036142.t1 MTR_2g017620 42.857 217 123 1 60 275 22 238 1.18e-52 173
MS.gene036142.t1 MTR_2g017620 42.857 217 123 1 60 275 36 252 1.38e-52 173
MS.gene036142.t1 MTR_2g104940 39.738 229 138 0 60 288 78 306 1.49e-52 174
MS.gene036142.t1 MTR_2g017660 39.556 225 131 2 62 285 39 259 4.03e-50 167
MS.gene036142.t1 MTR_8g087720 38.532 218 133 1 59 275 35 252 4.78e-50 167
MS.gene036142.t1 MTR_4g006730 40.455 220 131 0 60 279 73 292 6.37e-50 167
MS.gene036142.t1 MTR_8g087710 40.271 221 131 1 56 275 33 253 4.26e-49 164
MS.gene036142.t1 MTR_2g017610 39.535 215 129 1 62 275 38 252 3.94e-48 162
MS.gene036142.t1 MTR_4g084880 36.406 217 135 2 62 275 35 251 4.34e-48 162
MS.gene036142.t1 MTR_2g017570 39.070 215 130 1 62 275 38 252 6.95e-48 161
MS.gene036142.t1 MTR_5g079570 38.605 215 130 2 58 271 36 249 2.05e-45 154
MS.gene036142.t1 MTR_4g006630 41.935 186 108 0 94 279 20 205 5.84e-45 152
MS.gene036142.t1 MTR_4g006730 41.935 186 108 0 94 279 20 205 9.07e-45 151
MS.gene036142.t1 MTR_5g063930 37.118 229 136 4 62 285 37 262 2.03e-44 152
MS.gene036142.t1 MTR_2g017620 44.444 171 94 1 106 275 1 171 2.75e-44 149
MS.gene036142.t1 MTR_3g008920 38.565 223 135 2 50 271 14 235 4.61e-44 151
MS.gene036142.t1 MTR_1g097840 42.262 168 97 0 57 224 69 236 1.06e-31 119
MS.gene036142.t1 MTR_4g006730 35.897 195 113 1 60 254 73 255 7.63e-30 114
MS.gene036142.t1 MTR_7g010650 35.758 165 99 1 47 204 15 179 4.43e-28 107
MS.gene036142.t1 MTR_8g087720 35.542 166 106 1 60 224 36 201 6.86e-28 107
MS.gene036142.t1 MTR_8g087720 36.301 146 92 1 60 204 36 181 1.33e-23 95.9
MS.gene036142.t1 MTR_2g101370 31.933 238 144 8 54 276 8 242 2.22e-22 93.6
MS.gene036142.t1 MTR_8g013680 32.258 248 144 9 54 284 7 247 5.70e-22 92.8
MS.gene036142.t1 MTR_1g006590 30.734 218 144 5 59 270 16 232 3.54e-20 87.8
MS.gene036142.t1 MTR_7g103030 30.396 227 149 5 65 283 24 249 4.41e-19 84.7
MS.gene036142.t1 MTR_1g077540 26.271 236 163 4 62 289 21 253 1.21e-18 83.6
MS.gene036142.t1 MTR_1g006490 30.317 221 145 6 62 275 19 237 1.90e-18 83.2
MS.gene036142.t1 MTR_6g069040 27.897 233 158 5 62 284 21 253 2.15e-18 83.2
MS.gene036142.t1 MTR_5g012810 37.419 155 90 4 114 263 76 228 4.90e-18 82.0
MS.gene036142.t1 MTR_4g063090 31.646 158 105 2 114 268 78 235 9.06e-17 78.6
MS.gene036142.t1 MTR_8g088310 73.913 46 12 0 159 204 83 128 2.16e-15 71.6
MS.gene036142.t1 MTR_2g060360 28.319 226 153 5 59 276 16 240 7.17e-15 73.2
MS.gene036142.t1 MTR_3g070210 26.754 228 142 6 59 265 52 275 1.79e-14 72.4
MS.gene036142.t1 MTR_4g006650 35.507 138 80 1 66 203 8 136 2.31e-14 72.4
MS.gene036142.t1 MTR_1g115405 26.872 227 157 5 62 280 21 246 3.56e-14 71.2
MS.gene036142.t1 MTR_2g094270 26.293 232 148 5 62 270 40 271 4.58e-14 71.2
MS.gene036142.t1 MTR_3g118010 25.424 236 144 7 59 270 34 261 7.32e-14 70.5
MS.gene036142.t1 MTR_7g023350 27.477 222 153 4 62 275 21 242 9.44e-14 70.1
MS.gene036142.t1 MTR_5g082070 26.222 225 147 6 59 265 52 275 3.77e-13 68.6
MS.gene036142.t1 MTR_8g098375 25.778 225 148 6 59 265 49 272 4.03e-13 68.6
MS.gene036142.t1 MTR_3g070210 25.743 202 128 5 59 242 52 249 1.25e-12 67.0
MS.gene036142.t1 MTR_5g010150 25.778 225 148 6 59 265 49 272 1.43e-12 67.0
MS.gene036142.t1 MTR_7g101190 25.214 234 153 6 59 270 36 269 3.33e-12 65.9
MS.gene036142.t1 MTR_4g059390 24.790 238 149 6 59 270 36 269 4.48e-12 65.5
MS.gene036142.t1 MTR_4g415300 25.641 234 136 7 59 265 53 275 4.68e-12 65.5
MS.gene036142.t1 MTR_2g094270 26.866 201 127 4 62 242 40 240 2.18e-11 63.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene036142.t1 AT3G06100 55.686 255 106 3 27 277 11 262 4.20e-92 274
MS.gene036142.t1 AT3G06100 60.280 214 84 1 65 277 1 214 6.28e-87 259
MS.gene036142.t1 AT4G18910 40.081 247 135 2 37 275 32 273 4.96e-55 180
MS.gene036142.t1 AT4G10380 41.333 225 132 0 57 281 73 297 1.06e-54 180
MS.gene036142.t1 AT5G37820 40.000 215 128 1 62 275 43 257 7.47e-53 174
MS.gene036142.t1 AT5G37820 40.000 215 128 1 62 275 79 293 9.86e-53 175
MS.gene036142.t1 AT4G19030 39.912 228 129 1 56 275 49 276 1.54e-52 174
MS.gene036142.t1 AT1G80760 40.455 220 131 0 57 276 75 294 1.83e-51 171
MS.gene036142.t1 AT5G37810 38.249 217 133 1 60 275 41 257 1.84e-50 168
MS.gene036142.t1 AT1G31885 38.174 241 138 2 56 285 37 277 1.42e-48 164
MS.gene036142.t1 AT3G06100 53.901 141 64 1 138 277 41 181 3.52e-47 157
MS.gene036142.t1 AT2G34390 37.668 223 130 2 56 270 42 263 3.28e-44 152
MS.gene036142.t1 AT1G31885 38.565 223 126 2 74 285 1 223 8.83e-44 150
MS.gene036142.t1 AT2G34390 38.182 220 127 2 59 270 3 221 1.72e-43 149
MS.gene036142.t1 AT4G18910 36.735 196 111 2 37 224 32 222 1.85e-33 122
MS.gene036142.t1 AT4G19030 36.842 171 100 1 60 222 53 223 1.01e-30 115
MS.gene036142.t1 AT4G19030 36.601 153 89 1 60 204 53 205 7.19e-27 105
MS.gene036142.t1 AT2G34390 31.073 177 113 2 56 224 42 217 1.08e-22 94.0
MS.gene036142.t1 AT1G73190 27.313 227 152 3 62 275 24 250 7.04e-20 87.4
MS.gene036142.t1 AT4G17340 37.821 156 89 4 114 263 76 229 7.80e-20 87.0
MS.gene036142.t1 AT2G34390 31.646 158 99 2 56 205 42 198 8.00e-20 86.3
MS.gene036142.t1 AT2G29870 45.161 93 51 0 178 270 22 114 1.72e-19 83.2
MS.gene036142.t1 AT3G26520 30.802 237 149 8 59 283 19 252 3.70e-19 85.1
MS.gene036142.t1 AT5G47450 31.455 213 133 6 62 263 19 229 5.27e-19 84.7
MS.gene036142.t1 AT1G17810 31.250 160 107 2 114 270 86 245 6.87e-19 84.7
MS.gene036142.t1 AT3G16240 30.172 232 153 5 54 276 11 242 8.21e-19 84.0
MS.gene036142.t1 AT2G36830 29.870 231 152 6 62 283 21 250 1.42e-18 83.6
MS.gene036142.t1 AT2G25810 33.333 216 121 8 62 263 19 225 4.12e-18 82.0
MS.gene036142.t1 AT2G16850 25.532 235 145 6 59 270 33 260 2.38e-15 75.1
MS.gene036142.t1 AT4G35100 26.160 237 141 9 59 270 35 262 1.06e-13 70.1
MS.gene036142.t1 AT4G35100 26.160 237 141 9 59 270 35 262 1.06e-13 70.1
MS.gene036142.t1 AT4G01470 30.247 162 102 4 114 268 78 235 1.27e-13 69.7
MS.gene036142.t1 AT3G53420 26.471 238 145 6 59 270 36 269 1.53e-13 70.1
MS.gene036142.t1 AT3G53420 26.471 238 145 6 59 270 36 269 1.53e-13 70.1
MS.gene036142.t1 AT3G54820 27.197 239 142 9 59 270 35 268 2.85e-13 68.9
MS.gene036142.t1 AT5G60660 26.383 235 143 7 62 270 39 269 3.58e-13 68.9
MS.gene036142.t1 AT3G47440 27.660 235 157 4 56 279 17 249 3.64e-13 68.6
MS.gene036142.t1 AT1G31885 37.143 105 65 1 56 159 37 141 1.39e-12 64.3
MS.gene036142.t1 AT4G23400 24.014 279 182 8 7 265 4 272 2.80e-12 66.2
MS.gene036142.t1 AT1G01620 26.293 232 147 7 59 270 49 276 6.06e-12 65.1
MS.gene036142.t1 AT4G00430 26.872 227 142 7 59 265 50 272 1.21e-11 64.3
MS.gene036142.t1 AT2G37170 24.681 235 147 6 62 270 37 267 2.40e-11 63.5
MS.gene036142.t1 AT2G37180 24.464 233 150 6 62 270 37 267 2.45e-11 63.5
MS.gene036142.t1 AT3G61430 25.439 228 144 7 59 265 49 271 2.58e-11 63.5
MS.gene036142.t1 AT3G61430 25.439 228 144 7 59 265 49 271 2.58e-11 63.5
MS.gene036142.t1 AT2G37170 24.681 235 147 6 62 270 80 310 3.12e-11 63.5
MS.gene036142.t1 AT2G45960 25.877 228 143 7 59 265 49 271 3.15e-11 63.2

Find 72 sgRNAs with CRISPR-Local

Find 124 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTTTGTGCTATTATGTAAAT+TGG 0.196563 1.3:-50582753 None:intergenic
AAAGGCCAACTGCACCATTT+TGG 0.259769 1.3:-50582305 None:intergenic
CATGGAAATTTAAGAACATT+TGG 0.291328 1.3:+50583599 MS.gene036142:CDS
ATCAATCCATCCATATCTTT+TGG 0.297657 1.3:+50582039 MS.gene036142:CDS
AAATGGTGCAGTTGGCCTTT+TGG 0.300610 1.3:+50582308 MS.gene036142:CDS
AAGGGTGTAACTCTGCCTTC+TGG 0.313532 1.3:+50582856 MS.gene036142:CDS
GTGCAGGTGGGACATTTATC+TGG 0.315213 1.3:+50583042 MS.gene036142:intron
GACCAACTTCACTAGTGTTT+GGG 0.319934 1.3:-50583708 None:intergenic
TTTGTTGCTGGAATTGCAAT+TGG 0.328084 1.3:+50583066 MS.gene036142:CDS
ACAAACAATTGGTTCTTTGA+TGG 0.342849 1.3:+50582770 MS.gene036142:CDS
TGGGCTTGCTGTACTAATTA+CGG 0.344556 1.3:+50583086 MS.gene036142:CDS
TGACCAACTTCACTAGTGTT+TGG 0.354249 1.3:-50583709 None:intergenic
TCTTTGATGGCAACATATAT+TGG 0.360684 1.3:+50582783 MS.gene036142:CDS
CCTGCCACAGCTCCTCCACT+TGG 0.364123 1.3:-50583637 None:intergenic
GGGCTTGCTGTACTAATTAC+GGG 0.371372 1.3:+50583087 MS.gene036142:CDS
ATGTACTAACTTGCACAAAA+AGG 0.373003 1.3:-50583739 None:intergenic
TATATTGGTAGCCTTGTCTA+TGG 0.374181 1.3:+50582798 MS.gene036142:CDS
AATTTCCATGACACAATTGC+TGG 0.374440 1.3:-50583586 None:intergenic
GCACCAAGTAGTGGTTTGTC+TGG 0.377145 1.3:+50581983 MS.gene036142:CDS
GCAAGCACACAACACCAAAA+TGG 0.381298 1.3:+50582291 MS.gene036142:CDS
GGTGCATAATTTGAACCTTC+CGG 0.382873 1.3:-50581965 None:intergenic
TTCATTGATCCACCTGATAC+AGG 0.386394 1.3:-50583544 None:intergenic
ACAATAGCCTTTGCAACAAT+TGG 0.390249 1.3:+50582417 MS.gene036142:CDS
CTGCCACAGCTCCTCCACTT+GGG 0.408595 1.3:-50583636 None:intergenic
AGGGTGTAACTCTGCCTTCT+GGG 0.416790 1.3:+50582857 MS.gene036142:CDS
TACATAATAGCACAAACAAT+TGG 0.418691 1.3:+50582759 MS.gene036142:CDS
CAACAATTGGTCACTTTCCA+TGG 0.426818 1.3:+50582430 MS.gene036142:CDS
GCAAAGGCTATTGTGATAGC+TGG 0.429353 1.3:-50582408 None:intergenic
GCTGGACCAAGTGATCTTGC+TGG 0.429509 1.3:-50583568 None:intergenic
CTAGGTAATGGCAGAGGTGG+TGG 0.457154 1.3:+50582230 MS.gene036142:intron
CCAAGTGGAGGAGCTGTGGC+AGG 0.470037 1.3:+50583637 MS.gene036142:CDS
CTGTAGCTGCATACTCCAAA+AGG 0.475436 1.3:-50582323 None:intergenic
TTGTTGCTGGAATTGCAATT+GGG 0.478564 1.3:+50583067 MS.gene036142:CDS
TTACCATTCGAGCGAAATTG+AGG 0.478978 1.3:-50582102 None:intergenic
TTGGAGTATGCAGCTACAGC+AGG 0.482843 1.3:+50582327 MS.gene036142:CDS
CACCAAGTAGTGGTTTGTCT+GGG 0.484402 1.3:+50581984 MS.gene036142:CDS
TCCCCAGACAAACCACTACT+TGG 0.487928 1.3:-50581986 None:intergenic
TGCCACAGCTCCTCCACTTG+GGG 0.492390 1.3:-50583635 None:intergenic
TAACTCTGCCTTCTGGGTGG+AGG 0.509744 1.3:+50582863 MS.gene036142:CDS
CGACCTCAATTTCGCTCGAA+TGG 0.512673 1.3:+50582099 MS.gene036142:CDS
TCTGGGGATGATAAAGAGCT+TGG 0.521216 1.3:+50582001 MS.gene036142:CDS
TCCCCAAACACTAGTGAAGT+TGG 0.525887 1.3:+50583706 MS.gene036142:CDS
GTTGTGATAATCTTCTCTAT+AGG 0.527057 1.3:+50582360 MS.gene036142:CDS
TATGTAACAACCTTGGACCA+TGG 0.527508 1.3:-50582447 None:intergenic
CAACACCAAAATGGTGCAGT+TGG 0.532462 1.3:+50582300 MS.gene036142:CDS
TGTTGCAGCCCTGTATCAGG+TGG 0.533926 1.3:+50583535 MS.gene036142:intron
TGGTCACTTTCCATGGTCCA+AGG 0.541664 1.3:+50582437 MS.gene036142:CDS
TCAAATTATGCACCAAGTAG+TGG 0.544288 1.3:+50581974 MS.gene036142:CDS
CAAAGGCTATTGTGATAGCT+GGG 0.546101 1.3:-50582407 None:intergenic
AGCCCCAAGTGGAGGAGCTG+TGG 0.566367 1.3:+50583633 MS.gene036142:CDS
TGCAATAACCTCCACCCAGA+AGG 0.568635 1.3:-50582871 None:intergenic
TAGGTAATGGCAGAGGTGGT+GGG 0.568752 1.3:+50582231 MS.gene036142:intron
AGAAGGCAGAGTTACACCCT+TGG 0.582526 1.3:-50582854 None:intergenic
ATGAATCCAGCAAGATCACT+TGG 0.586915 1.3:+50583562 MS.gene036142:CDS
TCATTGATCCACCTGATACA+GGG 0.593857 1.3:-50583543 None:intergenic
AAAGTGACCAATTGTTGCAA+AGG 0.597190 1.3:-50582424 None:intergenic
ATGATGACTCAACCACTCCA+AGG 0.603566 1.3:+50582837 MS.gene036142:CDS
TTGGTCCAGCAATTGTGTCA+TGG 0.604068 1.3:+50583581 MS.gene036142:CDS
ACCAACTTCACTAGTGTTTG+GGG 0.606040 1.3:-50583707 None:intergenic
TGTTTGGGGAGCTACAATGT+TGG 0.607612 1.3:-50583693 None:intergenic
GTGTAACTCTGCCTTCTGGG+TGG 0.612167 1.3:+50582860 MS.gene036142:CDS
AATGTTGGTCTTTAAGACGT+AGG 0.629203 1.3:-50583678 None:intergenic
TGATGACTCAACCACTCCAA+GGG 0.629504 1.3:+50582838 MS.gene036142:CDS
TATCTAGGTAATGGCAGAGG+TGG 0.629546 1.3:+50582227 MS.gene036142:intron
ATGTATCTAGGTAATGGCAG+AGG 0.635074 1.3:+50582224 MS.gene036142:intron
TGTCTATGGAATAAAATCAG+AGG 0.637306 1.3:+50582812 MS.gene036142:CDS
GCAGAGTTACACCCTTGGAG+TGG 0.641435 1.3:-50582849 None:intergenic
AAACAATCATCATCTCCGGA+AGG 0.645392 1.3:+50581950 MS.gene036142:CDS
TACATCTTAGCCCCAAGTGG+AGG 0.646124 1.3:+50583625 MS.gene036142:CDS
GGCTTGCTGTACTAATTACG+GGG 0.655876 1.3:+50583088 MS.gene036142:CDS
ATATACATCTTAGCCCCAAG+TGG 0.684115 1.3:+50583622 MS.gene036142:CDS
ACCAAGTAGTGGTTTGTCTG+GGG 0.700105 1.3:+50581985 MS.gene036142:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTTGTAATAAAAATGTTATA+TGG + chr1.3:50583444-50583463 MS.gene036142:intron 10.0%
!! AAAAATTAAAAATATTGTGC+AGG + chr1.3:50583026-50583045 MS.gene036142:intron 15.0%
!!! AAATAGTATTGAAATTTGAT+TGG + chr1.3:50583165-50583184 MS.gene036142:intron 15.0%
!!! TTTGTATAATTTTTTTTCTC+CGG + chr1.3:50582548-50582567 MS.gene036142:intron 15.0%
!! ACTATTGACAAAATAATCAA+GGG - chr1.3:50582170-50582189 None:intergenic 20.0%
!! CTGTTTAAGAAACAATAAAA+GGG - chr1.3:50582730-50582749 None:intergenic 20.0%
!! CTTAACTTTCTCTTATAAAT+AGG + chr1.3:50582654-50582673 MS.gene036142:intron 20.0%
!! TACATAAATAACTACTTAGT+CGG + chr1.3:50582464-50582483 MS.gene036142:intron 20.0%
!! TCTATTTATAAGAGAAAGTT+TGG + chr1.3:50582572-50582591 MS.gene036142:intron 20.0%
!! TTTGATCACTTTGATATTTA+TGG + chr1.3:50583127-50583146 MS.gene036142:intron 20.0%
!!! ATTTTTAGCTAGTAAAAAAG+TGG - chr1.3:50583012-50583031 None:intergenic 20.0%
! AATAAGTATAGCATTCTAAG+TGG - chr1.3:50583369-50583388 None:intergenic 25.0%
! AATTAAAAATATTGTGCAGG+TGG + chr1.3:50583029-50583048 MS.gene036142:intron 25.0%
! AGTTATTTATGTAACAACCT+TGG - chr1.3:50582457-50582476 None:intergenic 25.0%
! ATTAAAAATATTGTGCAGGT+GGG + chr1.3:50583030-50583049 MS.gene036142:intron 25.0%
! CAATCAGTAAGTACTAATTA+AGG + chr1.3:50582939-50582958 MS.gene036142:intron 25.0%
! CATGGAAATTTAAGAACATT+TGG + chr1.3:50583599-50583618 MS.gene036142:CDS 25.0%
! CCTGTTTAAGAAACAATAAA+AGG - chr1.3:50582731-50582750 None:intergenic 25.0%
! CTTTCTCTTATAAATAGAAC+CGG - chr1.3:50582570-50582589 None:intergenic 25.0%
! GACTATTGACAAAATAATCA+AGG - chr1.3:50582171-50582190 None:intergenic 25.0%
! GGAATCATTGCTAATTATTA+AGG - chr1.3:50582991-50583010 None:intergenic 25.0%
! TACATAATAGCACAAACAAT+TGG + chr1.3:50582759-50582778 MS.gene036142:CDS 25.0%
!! ATATTGATGTTTTGTGTATG+TGG + chr1.3:50582261-50582280 MS.gene036142:CDS 25.0%
!! GTTTGTGCTATTATGTAAAT+TGG - chr1.3:50582756-50582775 None:intergenic 25.0%
!!! CCTTTTATTGTTTCTTAAAC+AGG + chr1.3:50582728-50582747 MS.gene036142:intron 25.0%
CTTTCTCTTATAAATAGGAC+CGG + chr1.3:50582659-50582678 MS.gene036142:intron 30.0%
GTTGTGATAATCTTCTCTAT+AGG + chr1.3:50582360-50582379 MS.gene036142:CDS 30.0%
TCAACAAAACTTGATGTATC+TGG + chr1.3:50582595-50582614 MS.gene036142:intron 30.0%
TGAAAAACAATCATCATCTC+CGG + chr1.3:50581946-50581965 MS.gene036142:CDS 30.0%
TGTCTATGGAATAAAATCAG+AGG + chr1.3:50582812-50582831 MS.gene036142:CDS 30.0%
TTGATTTCATTAGTACACTC+CGG - chr1.3:50582681-50582700 None:intergenic 30.0%
! ACAAACAATTGGTTCTTTGA+TGG + chr1.3:50582770-50582789 MS.gene036142:CDS 30.0%
! ACTTGACAATATTACTGGTT+GGG - chr1.3:50583328-50583347 None:intergenic 30.0%
! ATCAATCCATCCATATCTTT+TGG + chr1.3:50582039-50582058 MS.gene036142:CDS 30.0%
! CTGATTTTATTCCATAGACA+AGG - chr1.3:50582812-50582831 None:intergenic 30.0%
! TAACTTGCACAAAAAGGTAT+TGG - chr1.3:50583736-50583755 None:intergenic 30.0%
! TCTTTGATGGCAACATATAT+TGG + chr1.3:50582783-50582802 MS.gene036142:CDS 30.0%
! TTTTAGCCAAAAGATATGGA+TGG - chr1.3:50582048-50582067 None:intergenic 30.0%
!! AGTTATTTTGCCATGTATCT+AGG + chr1.3:50582212-50582231 MS.gene036142:intron 30.0%
!!! GTGTTTTTAGCCAAAAGATA+TGG - chr1.3:50582052-50582071 None:intergenic 30.0%
AAAGTGACCAATTGTTGCAA+AGG - chr1.3:50582427-50582446 None:intergenic 35.0%
AATTTCCATGACACAATTGC+TGG - chr1.3:50583589-50583608 None:intergenic 35.0%
ACAATAGCCTTTGCAACAAT+TGG + chr1.3:50582417-50582436 MS.gene036142:CDS 35.0%
AGTATAGCATTCTAAGTGGT+CGG - chr1.3:50583365-50583384 None:intergenic 35.0%
CACTTGACAATATTACTGGT+TGG - chr1.3:50583329-50583348 None:intergenic 35.0%
TCAAATTATGCACCAAGTAG+TGG + chr1.3:50581974-50581993 MS.gene036142:CDS 35.0%
TTGTTGCTGGAATTGCAATT+GGG + chr1.3:50583067-50583086 MS.gene036142:CDS 35.0%
TTTGCCATGTATCTAGGTAA+TGG + chr1.3:50582218-50582237 MS.gene036142:intron 35.0%
TTTGTTGCTGGAATTGCAAT+TGG + chr1.3:50583066-50583085 MS.gene036142:CDS 35.0%
! AAACACAAAACGAAGAGTGT+TGG - chr1.3:50583264-50583283 None:intergenic 35.0%
! AATATTACTGGTTGGGTTGT+CGG - chr1.3:50583321-50583340 None:intergenic 35.0%
!! AAACGAAGAGTGTTGGAATA+TGG - chr1.3:50583257-50583276 None:intergenic 35.0%
!! AATGTTGGTCTTTAAGACGT+AGG - chr1.3:50583681-50583700 None:intergenic 35.0%
!! GAAATTGAGGTCGATTTTGT+TGG - chr1.3:50582092-50582111 None:intergenic 35.0%
!! TATATTGGTAGCCTTGTCTA+TGG + chr1.3:50582798-50582817 MS.gene036142:CDS 35.0%
!!! CATTTATCTGGTTTTGTTGC+TGG + chr1.3:50583054-50583073 MS.gene036142:CDS 35.0%
AAACAATCATCATCTCCGGA+AGG + chr1.3:50581950-50581969 MS.gene036142:CDS 40.0%
ACCAACTTCACTAGTGTTTG+GGG - chr1.3:50583710-50583729 None:intergenic 40.0%
ATATACATCTTAGCCCCAAG+TGG + chr1.3:50583622-50583641 MS.gene036142:CDS 40.0%
ATGAATCCAGCAAGATCACT+TGG + chr1.3:50583562-50583581 MS.gene036142:CDS 40.0%
CAAAGGCTATTGTGATAGCT+GGG - chr1.3:50582410-50582429 None:intergenic 40.0%
GACCAACTTCACTAGTGTTT+GGG - chr1.3:50583711-50583730 None:intergenic 40.0%
GGTGCATAATTTGAACCTTC+CGG - chr1.3:50581968-50581987 None:intergenic 40.0%
TATGTAACAACCTTGGACCA+TGG - chr1.3:50582450-50582469 None:intergenic 40.0%
TCATTGATCCACCTGATACA+GGG - chr1.3:50583546-50583565 None:intergenic 40.0%
TCTGCCATTACCTAGATACA+TGG - chr1.3:50582225-50582244 None:intergenic 40.0%
TGACCAACTTCACTAGTGTT+TGG - chr1.3:50583712-50583731 None:intergenic 40.0%
TTACCATTCGAGCGAAATTG+AGG - chr1.3:50582105-50582124 None:intergenic 40.0%
TTCATTGATCCACCTGATAC+AGG - chr1.3:50583547-50583566 None:intergenic 40.0%
! ATGTATCTAGGTAATGGCAG+AGG + chr1.3:50582224-50582243 MS.gene036142:intron 40.0%
! CAACAATTGGTCACTTTCCA+TGG + chr1.3:50582430-50582449 MS.gene036142:CDS 40.0%
!! TGGGCTTGCTGTACTAATTA+CGG + chr1.3:50583086-50583105 MS.gene036142:CDS 40.0%
ATGATGACTCAACCACTCCA+AGG + chr1.3:50582837-50582856 MS.gene036142:CDS 45.0%
CAACACCAAAATGGTGCAGT+TGG + chr1.3:50582300-50582319 MS.gene036142:CDS 45.0%
CTGTAGCTGCATACTCCAAA+AGG - chr1.3:50582326-50582345 None:intergenic 45.0%
GAAATTCACTCTGACCGTCA+TGG + chr1.3:50583286-50583305 MS.gene036142:intron 45.0%
GCAAAGGCTATTGTGATAGC+TGG - chr1.3:50582411-50582430 None:intergenic 45.0%
GCAAGCACACAACACCAAAA+TGG + chr1.3:50582291-50582310 MS.gene036142:CDS 45.0%
GGAATATGGCATCACAACGA+TGG - chr1.3:50583243-50583262 None:intergenic 45.0%
TCCCCAAACACTAGTGAAGT+TGG + chr1.3:50583706-50583725 MS.gene036142:CDS 45.0%
TCTGGGGATGATAAAGAGCT+TGG + chr1.3:50582001-50582020 MS.gene036142:CDS 45.0%
TGATGACTCAACCACTCCAA+GGG + chr1.3:50582838-50582857 MS.gene036142:CDS 45.0%
TGCTGTACTAATTACGGGGT+GGG + chr1.3:50583092-50583111 MS.gene036142:intron 45.0%
TGTTTGGGGAGCTACAATGT+TGG - chr1.3:50583696-50583715 None:intergenic 45.0%
TTGCTGTACTAATTACGGGG+TGG + chr1.3:50583091-50583110 MS.gene036142:intron 45.0%
TTGGTCCAGCAATTGTGTCA+TGG + chr1.3:50583581-50583600 MS.gene036142:CDS 45.0%
! AAAGGCCAACTGCACCATTT+TGG - chr1.3:50582308-50582327 None:intergenic 45.0%
! ACCAAGTAGTGGTTTGTCTG+GGG + chr1.3:50581985-50582004 MS.gene036142:CDS 45.0%
! CACCAAGTAGTGGTTTGTCT+GGG + chr1.3:50581984-50582003 MS.gene036142:CDS 45.0%
! GGGGCACTTGACAATATTAC+TGG - chr1.3:50583333-50583352 None:intergenic 45.0%
! TATCTAGGTAATGGCAGAGG+TGG + chr1.3:50582227-50582246 MS.gene036142:intron 45.0%
! TTTTGTTGCAGCCCTGTATC+AGG + chr1.3:50583532-50583551 MS.gene036142:intron 45.0%
!! GGCTTGCTGTACTAATTACG+GGG + chr1.3:50583088-50583107 MS.gene036142:CDS 45.0%
!! GGGCTTGCTGTACTAATTAC+GGG + chr1.3:50583087-50583106 MS.gene036142:CDS 45.0%
!!! AAATGGTGCAGTTGGCCTTT+TGG + chr1.3:50582308-50582327 MS.gene036142:CDS 45.0%
AGAAGGCAGAGTTACACCCT+TGG - chr1.3:50582857-50582876 None:intergenic 50.0%
AGGGTGTAACTCTGCCTTCT+GGG + chr1.3:50582857-50582876 MS.gene036142:CDS 50.0%
CGACCTCAATTTCGCTCGAA+TGG + chr1.3:50582099-50582118 MS.gene036142:CDS 50.0%
GTGCAGGTGGGACATTTATC+TGG + chr1.3:50583042-50583061 MS.gene036142:intron 50.0%
TACATCTTAGCCCCAAGTGG+AGG + chr1.3:50583625-50583644 MS.gene036142:CDS 50.0%
TCCCCAGACAAACCACTACT+TGG - chr1.3:50581989-50582008 None:intergenic 50.0%
TGCAATAACCTCCACCCAGA+AGG - chr1.3:50582874-50582893 None:intergenic 50.0%
TTGGAGTATGCAGCTACAGC+AGG + chr1.3:50582327-50582346 MS.gene036142:CDS 50.0%
! AAGGGTGTAACTCTGCCTTC+TGG + chr1.3:50582856-50582875 MS.gene036142:CDS 50.0%
! GCACCAAGTAGTGGTTTGTC+TGG + chr1.3:50581983-50582002 MS.gene036142:CDS 50.0%
! GTCGGTTCACTGAACCATGA+CGG - chr1.3:50583303-50583322 None:intergenic 50.0%
! TAGGTAATGGCAGAGGTGGT+GGG + chr1.3:50582231-50582250 MS.gene036142:intron 50.0%
! TGGTCACTTTCCATGGTCCA+AGG + chr1.3:50582437-50582456 MS.gene036142:CDS 50.0%
ATTCTAAGTGGTCGGCCTCG+AGG - chr1.3:50583357-50583376 None:intergenic 55.0%
GCAGAGTTACACCCTTGGAG+TGG - chr1.3:50582852-50582871 None:intergenic 55.0%
GCTGGACCAAGTGATCTTGC+TGG - chr1.3:50583571-50583590 None:intergenic 55.0%
GTGTAACTCTGCCTTCTGGG+TGG + chr1.3:50582860-50582879 MS.gene036142:CDS 55.0%
TAACTCTGCCTTCTGGGTGG+AGG + chr1.3:50582863-50582882 MS.gene036142:CDS 55.0%
TGTTGCAGCCCTGTATCAGG+TGG + chr1.3:50583535-50583554 MS.gene036142:intron 55.0%
! CTAGGTAATGGCAGAGGTGG+TGG + chr1.3:50582230-50582249 MS.gene036142:intron 55.0%
CTGCCACAGCTCCTCCACTT+GGG - chr1.3:50583639-50583658 None:intergenic 60.0%
TAAGTGGTCGGCCTCGAGGT+GGG - chr1.3:50583353-50583372 None:intergenic 60.0%
TGCCACAGCTCCTCCACTTG+GGG - chr1.3:50583638-50583657 None:intergenic 60.0%
TTGTCAAGTGCCCCACCTCG+AGG + chr1.3:50583339-50583358 MS.gene036142:intron 60.0%
AAGTGGTCGGCCTCGAGGTG+GGG - chr1.3:50583352-50583371 None:intergenic 65.0%
AGCCCCAAGTGGAGGAGCTG+TGG + chr1.3:50583633-50583652 MS.gene036142:CDS 65.0%
CCAAGTGGAGGAGCTGTGGC+AGG + chr1.3:50583637-50583656 MS.gene036142:CDS 65.0%
CCTGCCACAGCTCCTCCACT+TGG - chr1.3:50583640-50583659 None:intergenic 65.0%
CTAAGTGGTCGGCCTCGAGG+TGG - chr1.3:50583354-50583373 None:intergenic 65.0%


Chromosome Type Strat End Strand Name
chr1.3 gene 50581932 50583756 50581932 ID=MS.gene036142
chr1.3 mRNA 50581932 50583756 50581932 ID=MS.gene036142.t1;Parent=MS.gene036142
chr1.3 exon 50581932 50582120 50581932 ID=MS.gene036142.t1.exon1;Parent=MS.gene036142.t1
chr1.3 CDS 50581932 50582120 50581932 ID=cds.MS.gene036142.t1;Parent=MS.gene036142.t1
chr1.3 exon 50582234 50582458 50582234 ID=MS.gene036142.t1.exon2;Parent=MS.gene036142.t1
chr1.3 CDS 50582234 50582458 50582234 ID=cds.MS.gene036142.t1;Parent=MS.gene036142.t1
chr1.3 exon 50582750 50582944 50582750 ID=MS.gene036142.t1.exon3;Parent=MS.gene036142.t1
chr1.3 CDS 50582750 50582944 50582750 ID=cds.MS.gene036142.t1;Parent=MS.gene036142.t1
chr1.3 exon 50583048 50583109 50583048 ID=MS.gene036142.t1.exon4;Parent=MS.gene036142.t1
chr1.3 CDS 50583048 50583109 50583048 ID=cds.MS.gene036142.t1;Parent=MS.gene036142.t1
chr1.3 exon 50583543 50583756 50583543 ID=MS.gene036142.t1.exon5;Parent=MS.gene036142.t1
chr1.3 CDS 50583543 50583756 50583543 ID=cds.MS.gene036142.t1;Parent=MS.gene036142.t1
Gene Sequence

>MS.gene036142

ATGAGAGACATATTTGAAAAACAATCATCATCTCCGGAAGGTTCAAATTATGCACCAAGTAGTGGTTTGTCTGGGGATGATAAAGAGCTTGGCTATAGAGCTGCAACATCAATCCATCCATATCTTTTGGCTAAAAACACTTATCTTCATTTCTTAGCCAACAAAATCGACCTCAATTTCGCTCGAATGGTAATAGTATATTCAACATTTTTATGTGTATACAGAATGCAATTGTCCCTTGATTATTTTGTCAATAGTCTTTTGATAAATGCAAAATTGAAGTTATTTTGCCATGTATCTAGGTAATGGCAGAGGTGGTGGGTACTTTTATATTGATGTTTTGTGTATGTGGAATCATTGCAAGCACACAACACCAAAATGGTGCAGTTGGCCTTTTGGAGTATGCAGCTACAGCAGGATTAACAGTCGTTGTGATAATCTTCTCTATAGGCTCAATTTCTTGTGCACATGTTAACCCAGCTATCACAATAGCCTTTGCAACAATTGGTCACTTTCCATGGTCCAAGGTTGTTACATAAATAACTACTTAGTCGGTTAAACTTAAAATTTAGATAGTATATCTGATTGATTTATAGAGTTTAATTTTTATGTATTTTTTGTATAATTTTTTTTCTCCGGTTCTATTTATAAGAGAAAGTTTGGTCAACAAAACTTGATGTATCTGGTTAAAAATTCAGTCAAGATACATCAATTTTTGTTGACTTAACTTTCTCTTATAAATAGGACCGGAGTGTACTAATGAAATCAAATTTATAACTATATAATATATACATACCCTTTTATTGTTTCTTAAACAGGTTCCAATTTACATAATAGCACAAACAATTGGTTCTTTGATGGCAACATATATTGGTAGCCTTGTCTATGGAATAAAATCAGAGGTTATGATGACTCAACCACTCCAAGGGTGTAACTCTGCCTTCTGGGTGGAGGTTATTGCAACATTCATCATCATGTTTTTGATTACAGCTTTGACATCTGAATCTCAATCAGTAAGTACTAATTAAGGAAAAAAATTACATAGTTATATATGTTCCTTAATAATTAGCAATGATTCCACTTTTTTACTAGCTAAAAATTAAAAATATTGTGCAGGTGGGACATTTATCTGGTTTTGTTGCTGGAATTGCAATTGGGCTTGCTGTACTAATTACGGGGTGGGTACTCACATATATTTGATCACTTTGATATTTATGGAGATATTACTTTGATAAATAGTATTGAAATTTGATTGGATATATGTTTAAAATTCTTTATATGATTAGTAGTACGTTTTGTGTGTGTGCACCATCGTTGTGATGCCATATTCCAACACTCTTCGTTTTGTGTTTATGAAATTCACTCTGACCGTCATGGTTCAGTGAACCGACAACCCAACCAGTAATATTGTCAAGTGCCCCACCTCGAGGCCGACCACTTAGAATGCTATACTTATTTGTCTTGCACTGTAACTTAAGTTGTGTACATAAACATTTTTGTCTAATTGTGTATTTTGTAATAAAAATGTTATATGGATTAATTCTATATCTTACTCTTTAACATGATACTTTAATCTAATAACAAAGTAATTTGATTTAATTTTTGTTGCAGCCCTGTATCAGGTGGATCAATGAATCCAGCAAGATCACTTGGTCCAGCAATTGTGTCATGGAAATTTAAGAACATTTGGATATACATCTTAGCCCCAAGTGGAGGAGCTGTGGCAGGAGCTCTAATGTTTCGTTTCCTACGTCTTAAAGACCAACATTGTAGCTCCCCAAACACTAGTGAAGTTGGTCATCCAATACCTTTTTGTGCAAGTTAG
Protein sequence

>MS.gene036142.t1

MRDIFEKQSSSPEGSNYAPSSGLSGDDKELGYRAATSIHPYLLAKNTYLHFLANKIDLNFARMVMAEVVGTFILMFCVCGIIASTQHQNGAVGLLEYAATAGLTVVVIIFSIGSISCAHVNPAITIAFATIGHFPWSKVPIYIIAQTIGSLMATYIGSLVYGIKSEVMMTQPLQGCNSAFWVEVIATFIIMFLITALTSESQSVGHLSGFVAGIAIGLAVLITGPVSGGSMNPARSLGPAIVSWKFKNIWIYILAPSGGAVAGALMFRFLRLKDQHCSSPNTSEVGHPIPFCAS