AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene002643

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene002643.t1 MTR_2g017620 92.937 269 17 1 1 267 1 269 0.0 503
MS.gene002643.t1 MTR_2g017590 91.144 271 23 1 1 271 1 270 0.0 501
MS.gene002643.t1 MTR_2g017620 94.118 255 15 0 13 267 1 255 4.93e-177 488
MS.gene002643.t1 MTR_2g017570 79.026 267 56 0 5 271 7 273 2.58e-158 441
MS.gene002643.t1 MTR_2g017610 78.652 267 57 0 5 271 7 273 2.36e-157 439
MS.gene002643.t1 MTR_8g087720 73.846 260 68 0 5 264 7 266 4.07e-143 402
MS.gene002643.t1 MTR_8g087710 67.557 262 85 0 10 271 13 274 3.99e-131 372
MS.gene002643.t1 MTR_2g017620 95.745 188 8 0 80 267 1 188 1.07e-129 365
MS.gene002643.t1 MTR_2g017660 66.538 260 81 1 10 263 13 272 7.97e-129 367
MS.gene002643.t1 MTR_8g087720 73.333 195 52 0 5 199 7 201 1.14e-100 292
MS.gene002643.t1 MTR_4g084880 55.556 252 107 3 16 265 18 266 1.34e-98 290
MS.gene002643.t1 MTR_5g079570 53.414 249 107 3 6 251 12 254 8.34e-90 267
MS.gene002643.t1 MTR_8g087720 70.787 178 52 0 5 182 7 184 2.55e-87 258
MS.gene002643.t1 MTR_3g008920 56.054 223 97 1 32 254 22 243 5.50e-85 255
MS.gene002643.t1 MTR_4g006730 49.799 249 118 2 15 260 54 298 1.06e-72 225
MS.gene002643.t1 MTR_2g104940 49.603 252 118 3 14 260 56 303 3.65e-72 224
MS.gene002643.t1 MTR_7g010650 44.275 262 139 4 3 262 5 261 1.37e-70 219
MS.gene002643.t1 MTR_1g097840 50.000 234 106 3 32 257 70 300 7.42e-68 213
MS.gene002643.t1 MTR_5g063930 48.523 237 107 6 30 258 30 259 1.21e-66 208
MS.gene002643.t1 MTR_4g006630 52.093 215 96 2 49 260 1 211 1.52e-66 206
MS.gene002643.t1 MTR_4g006730 52.093 215 96 2 49 260 1 211 2.11e-66 206
MS.gene002643.t1 MTR_1g070385 43.662 213 119 1 38 250 64 275 1.29e-49 175
MS.gene002643.t1 MTR_4g006730 43.836 219 104 3 14 229 53 255 3.21e-46 155
MS.gene002643.t1 MTR_1g097840 52.632 171 74 2 32 199 70 236 2.39e-44 151
MS.gene002643.t1 MTR_7g010650 38.547 179 104 3 3 179 5 179 4.15e-36 127
MS.gene002643.t1 MTR_1g006490 38.053 226 129 8 21 238 3 225 2.48e-29 111
MS.gene002643.t1 MTR_8g013680 32.773 238 149 6 28 254 9 246 2.35e-28 108
MS.gene002643.t1 MTR_2g101370 33.755 237 146 6 29 254 11 247 1.32e-27 107
MS.gene002643.t1 MTR_1g077540 33.188 229 146 3 30 251 15 243 3.03e-27 106
MS.gene002643.t1 MTR_6g069040 32.922 243 152 6 19 251 2 243 3.30e-27 106
MS.gene002643.t1 MTR_4g006650 45.517 145 63 3 37 178 5 136 3.36e-25 102
MS.gene002643.t1 MTR_1g006590 33.065 248 156 7 21 261 3 247 4.04e-24 97.8
MS.gene002643.t1 MTR_5g012810 34.906 212 129 5 35 238 18 228 8.98e-24 97.1
MS.gene002643.t1 MTR_4g063090 33.184 223 140 5 41 255 26 247 2.59e-22 93.2
MS.gene002643.t1 MTR_7g103030 32.701 211 134 4 31 234 16 225 8.22e-22 91.7
MS.gene002643.t1 MTR_1g115405 32.068 237 147 6 35 261 20 252 1.26e-20 88.6
MS.gene002643.t1 MTR_2g094270 29.778 225 134 5 34 235 38 261 1.30e-17 80.9
MS.gene002643.t1 MTR_7g101190 30.172 232 141 6 25 235 28 259 1.69e-17 80.5
MS.gene002643.t1 MTR_5g082070 31.944 216 125 6 39 235 58 270 3.40e-17 79.7
MS.gene002643.t1 MTR_4g415300 32.075 212 129 6 39 235 59 270 6.88e-17 79.0
MS.gene002643.t1 MTR_7g023350 30.472 233 151 4 35 258 20 250 7.33e-17 78.2
MS.gene002643.t1 MTR_5g010150 31.925 213 129 5 39 235 55 267 8.19e-17 78.6
MS.gene002643.t1 MTR_3g070210 32.243 214 127 7 39 235 58 270 1.07e-16 78.6
MS.gene002643.t1 MTR_3g118010 29.680 219 139 4 34 237 35 253 1.49e-16 77.8
MS.gene002643.t1 MTR_8g098375 31.776 214 128 7 39 235 55 267 1.09e-15 75.5
MS.gene002643.t1 MTR_2g060360 30.622 209 137 4 35 236 18 225 5.60e-15 73.2
MS.gene002643.t1 MTR_2g094270 28.767 219 134 5 34 232 38 254 3.88e-14 70.9
MS.gene002643.t1 MTR_3g070210 31.658 199 121 6 39 223 58 255 1.14e-13 69.7
MS.gene002643.t1 MTR_1g095070 28.571 182 114 4 78 245 24 203 3.15e-13 67.8
MS.gene002643.t1 MTR_4g059390 27.354 223 141 5 34 235 37 259 6.01e-13 67.8
MS.gene002643.t1 MTR_4g075590 24.664 223 140 7 39 236 40 259 3.76e-11 62.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene002643.t1 AT4G18910 70.445 247 66 1 24 263 40 286 2.67e-126 361
MS.gene002643.t1 AT4G19030 67.206 247 74 1 24 263 43 289 4.35e-121 348
MS.gene002643.t1 AT5G37820 60.656 244 93 1 20 263 30 270 5.95e-102 299
MS.gene002643.t1 AT5G37820 60.656 244 93 1 20 263 66 306 2.21e-101 298
MS.gene002643.t1 AT5G37810 59.350 246 97 1 20 265 30 272 1.79e-100 295
MS.gene002643.t1 AT1G31885 52.416 269 115 3 1 257 4 271 3.23e-94 280
MS.gene002643.t1 AT4G18910 72.131 183 44 1 24 199 40 222 8.55e-89 263
MS.gene002643.t1 AT1G31885 56.682 217 87 1 48 257 1 217 3.21e-86 258
MS.gene002643.t1 AT2G34390 50.175 285 116 5 1 263 1 281 7.61e-86 258
MS.gene002643.t1 AT4G19030 68.306 183 51 1 24 199 43 225 3.28e-85 254
MS.gene002643.t1 AT2G34390 54.978 231 96 2 37 260 7 236 1.60e-83 251
MS.gene002643.t1 AT4G19030 66.258 163 48 1 24 179 43 205 2.56e-73 224
MS.gene002643.t1 AT1G80760 54.505 222 96 2 31 250 75 293 1.25e-71 222
MS.gene002643.t1 AT4G10380 47.876 259 122 3 8 257 50 304 1.75e-69 217
MS.gene002643.t1 AT2G34390 52.036 221 80 6 1 199 1 217 2.04e-64 201
MS.gene002643.t1 AT2G34390 50.246 203 75 6 1 181 1 199 9.43e-56 179
MS.gene002643.t1 AT3G06100 42.661 218 123 2 35 251 45 261 3.30e-48 161
MS.gene002643.t1 AT3G06100 42.991 214 120 2 39 251 1 213 5.84e-48 159
MS.gene002643.t1 AT1G31885 51.282 117 51 2 1 112 4 119 1.34e-32 117
MS.gene002643.t1 AT3G16240 36.406 217 129 4 27 234 8 224 2.45e-31 117
MS.gene002643.t1 AT2G29870 58.621 87 36 0 151 237 20 106 6.03e-30 110
MS.gene002643.t1 AT5G47450 36.792 212 126 4 35 238 18 229 9.99e-29 110
MS.gene002643.t1 AT3G06100 39.437 142 84 2 112 252 41 181 6.65e-26 101
MS.gene002643.t1 AT4G17340 33.962 212 132 4 35 238 18 229 4.40e-25 100
MS.gene002643.t1 AT1G17810 32.231 242 150 4 31 258 19 260 3.19e-24 98.6
MS.gene002643.t1 AT3G26520 34.298 242 138 8 31 258 17 251 5.81e-24 97.4
MS.gene002643.t1 AT1G73190 30.924 249 141 6 23 251 14 251 4.79e-23 95.5
MS.gene002643.t1 AT2G25810 36.019 211 125 7 35 238 18 225 1.50e-22 93.6
MS.gene002643.t1 AT2G36830 32.900 231 141 5 13 234 1 226 5.93e-22 92.0
MS.gene002643.t1 AT4G01470 32.900 231 143 6 13 235 1 227 2.35e-20 87.8
MS.gene002643.t1 AT4G35100 31.963 219 134 5 34 237 36 254 9.37e-19 84.0
MS.gene002643.t1 AT4G35100 31.963 219 134 5 34 237 36 254 9.37e-19 84.0
MS.gene002643.t1 AT2G16850 30.594 219 137 5 34 237 34 252 2.64e-18 82.8
MS.gene002643.t1 AT5G60660 28.244 262 150 7 33 270 36 283 3.44e-18 82.8
MS.gene002643.t1 AT3G47440 29.680 219 138 5 35 242 22 235 1.94e-17 80.1
MS.gene002643.t1 AT2G39010 31.771 192 119 3 66 245 77 268 4.39e-17 79.7
MS.gene002643.t1 AT3G54820 28.326 233 146 5 34 245 36 268 9.65e-17 78.6
MS.gene002643.t1 AT3G61430 31.455 213 129 6 39 235 55 266 2.60e-16 77.4
MS.gene002643.t1 AT3G61430 31.455 213 129 6 39 235 55 266 2.60e-16 77.4
MS.gene002643.t1 AT3G53420 28.755 233 145 6 34 245 37 269 3.11e-16 77.0
MS.gene002643.t1 AT3G53420 28.755 233 145 6 34 245 37 269 3.11e-16 77.0
MS.gene002643.t1 AT1G01620 31.628 215 126 5 39 235 55 266 3.82e-16 77.0
MS.gene002643.t1 AT4G00430 31.628 215 126 5 39 235 56 267 6.99e-16 76.3
MS.gene002643.t1 AT1G01620 33.158 190 109 4 61 235 8 194 7.61e-16 74.7
MS.gene002643.t1 AT2G37170 27.468 233 148 5 34 245 35 267 7.84e-16 75.9
MS.gene002643.t1 AT2G37170 27.468 233 148 5 34 245 78 310 1.31e-15 75.9
MS.gene002643.t1 AT4G23400 31.163 215 127 5 39 235 56 267 2.64e-15 74.7
MS.gene002643.t1 AT2G45960 30.986 213 130 6 39 235 55 266 4.22e-15 73.9
MS.gene002643.t1 AT2G37180 27.966 236 143 6 34 245 35 267 3.14e-14 71.6
MS.gene002643.t1 AT2G45960 31.282 195 120 5 39 220 55 248 1.21e-12 66.6
MS.gene002643.t1 AT2G45960 31.282 195 120 5 39 220 55 248 1.59e-12 66.6

Find 75 sgRNAs with CRISPR-Local

Find 141 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TACCTTATGTTCGTCATTTC+TGG 0.054064 2.1:-68813747 MS.gene002643:CDS
CTGGCTTATTTGTGATTCTA+AGG 0.227975 2.1:+68813077 None:intergenic
TCCTGGAATTGCAATTGTTT+GGG 0.271099 2.1:-68814580 MS.gene002643:CDS
TTCCTGGAATTGCAATTGTT+TGG 0.289298 2.1:-68814581 MS.gene002643:CDS
ACATTCTTCTTGATATTTGC+TGG 0.306945 2.1:-68814651 MS.gene002643:CDS
TCTTCATTCCTCAAAGGTTT+AGG 0.313855 2.1:-68813034 MS.gene002643:CDS
GTCACCTATTCTTGGAGCTT+TGG 0.322754 2.1:-68813122 MS.gene002643:CDS
GGGACTTGTTGTTATGGTAT+TGG 0.326696 2.1:-68814559 MS.gene002643:CDS
TATTCTATTGGTCATATATC+TGG 0.335738 2.1:-68814534 MS.gene002643:CDS
ATGGTATTGGTCTATTCTAT+TGG 0.341863 2.1:-68814546 MS.gene002643:CDS
GATAAAGTAGTGACACTTCC+TGG 0.350687 2.1:-68814597 MS.gene002643:CDS
CCCCAAACAATTGCAATTCC+AGG 0.359255 2.1:+68814579 None:intergenic
GCAGGCCCTAAGCTTCTTGC+TGG 0.362584 2.1:+68813187 None:intergenic
TCCATATTCCTCTATATTGA+TGG 0.376585 2.1:+68813155 None:intergenic
ATTGCTTCAGATTGGTGAAT+TGG 0.377943 2.1:-68813438 MS.gene002643:intron
TCAATTTGCAGGAACACTTC+CGG 0.378252 2.1:-68813817 MS.gene002643:CDS
CCATGCTTCCTAAACCTTTG+AGG 0.382124 2.1:+68813026 None:intergenic
ATGCTAAATGTGTTGTTTGC+GGG 0.383890 2.1:-68813389 MS.gene002643:CDS
GGCAAGGAAAATCAATTTGC+AGG 0.389055 2.1:-68813828 MS.gene002643:CDS
TATATGGTGTCACCTATTCT+TGG 0.391277 2.1:-68813130 MS.gene002643:CDS
CCTATTCTTGGAGCTTTGGC+TGG 0.403085 2.1:-68813118 MS.gene002643:CDS
TAGAGGAATATGGATATATA+TGG 0.403479 2.1:-68813146 MS.gene002643:CDS
AGGAACACTTCCGGCTGGTT+CGG 0.404188 2.1:-68813808 MS.gene002643:CDS
CTTCAGATTGGTGAATTGGC+TGG 0.406978 2.1:-68813434 MS.gene002643:intron
TTGGAGCTTTGGCTGGTACA+TGG 0.409617 2.1:-68813111 MS.gene002643:CDS
CTGCTTCAATGGAAACCTTC+CGG 0.415943 2.1:+68814470 None:intergenic
TGTTTGGGGACTTGTTGTTA+TGG 0.418172 2.1:-68814565 MS.gene002643:CDS
ATGAATCCAGCAAGAAGCTT+AGG 0.418884 2.1:-68813193 MS.gene002643:CDS
TTCTTGATATTTGCTGGATG+TGG 0.422703 2.1:-68814645 MS.gene002643:CDS
ATTCGACCACAAAAGCTTGA+TGG 0.429541 2.1:+68813784 None:intergenic
TGGAGCTTTGGCTGGTACAT+GGG 0.431169 2.1:-68813110 MS.gene002643:CDS
ACCATCAATATAGAGGAATA+TGG 0.435935 2.1:-68813156 MS.gene002643:CDS
GCTCTCAAACTCATATTTAG+TGG 0.443354 2.1:-68813849 MS.gene002643:CDS
TTTGAGGAATGAAGAACTCT+TGG 0.447025 2.1:+68813042 None:intergenic
CCAGCCAAAGCTCCAAGAAT+AGG 0.450629 2.1:+68813118 None:intergenic
CTCCAGAAATGACGAACATA+AGG 0.455985 2.1:+68813745 None:intergenic
TATATAATTGCTCAGGTCGC+TGG 0.462381 2.1:-68813891 MS.gene002643:CDS
ATTCATTGATGCTCCTGTGA+TGG 0.469127 2.1:+68813210 None:intergenic
TTCATTGATGCTCCTGTGAT+GGG 0.472526 2.1:+68813211 None:intergenic
TGATATTAGCAATGGAAAGC+TGG 0.491173 2.1:-68814879 MS.gene002643:CDS
CCTCAAAGGTTTAGGAAGCA+TGG 0.503782 2.1:-68813026 MS.gene002643:CDS
CGGAAGGTTTCCATTGAAGC+AGG 0.504912 2.1:-68814469 MS.gene002643:intron
TATTGATGGTGCACAATAGC+AGG 0.505141 2.1:+68813169 None:intergenic
TGAATCCAGCAAGAAGCTTA+GGG 0.507995 2.1:-68813192 MS.gene002643:CDS
CCTGGAATTGCAATTGTTTG+GGG 0.511430 2.1:-68814579 MS.gene002643:CDS
AATATAGTTGGTAGCAGAAG+TGG 0.514295 2.1:-68814679 MS.gene002643:intron
CATGCTAAATGTGTTGTTTG+CGG 0.516473 2.1:-68813390 MS.gene002643:CDS
GAATTGGCTGGACTTGCAGT+TGG 0.518324 2.1:-68813422 MS.gene002643:CDS
CTCAAAGGTTTAGGAAGCAT+GGG 0.520761 2.1:-68813025 MS.gene002643:CDS
CTCTTGGTGAGCTCACGTAC+TGG 0.527633 2.1:+68813058 None:intergenic
ACCCGCTTATATAATTGCTC+AGG 0.527901 2.1:-68813898 MS.gene002643:CDS
ACCTGAGCAATTATATAAGC+GGG 0.540434 2.1:+68813897 None:intergenic
GTGTGAGCAATGGTGACAGC+GGG 0.558512 2.1:+68814498 None:intergenic
AACATGGGTGATATTAGCAA+TGG 0.558983 2.1:-68814887 MS.gene002643:CDS
ACCATTGCTCACACTACCAC+CGG 0.562160 2.1:-68814489 MS.gene002643:CDS
TGCTGGATGTGGTTCTGTGG+TGG 0.564205 2.1:-68814634 MS.gene002643:CDS
AAGAGTTCTTCATTCCTCAA+AGG 0.566116 2.1:-68813040 MS.gene002643:CDS
ATAGTTGGTAGCAGAAGTGG+TGG 0.567543 2.1:-68814676 MS.gene002643:intron
GCTTGATGGTCCGAACCAGC+CGG 0.573042 2.1:+68813798 None:intergenic
TGCTAAATGTGTTGTTTGCG+GGG 0.584865 2.1:-68813388 MS.gene002643:intron
TTTGCAGGAACACTTCCGGC+TGG 0.585819 2.1:-68813813 MS.gene002643:CDS
CAAACTCATATTTAGTGGCA+AGG 0.586123 2.1:-68813844 MS.gene002643:CDS
TAGCAATGGAAAGCTGGATG+TGG 0.587106 2.1:-68814873 MS.gene002643:CDS
ATTGTGCACCATCAATATAG+AGG 0.592044 2.1:-68813163 MS.gene002643:CDS
ATTTGCTGGATGTGGTTCTG+TGG 0.593346 2.1:-68814637 MS.gene002643:CDS
AATTACCGCTCTATTATCAG+TGG 0.623253 2.1:+68813719 None:intergenic
ATATTTGACAGACCCATCAC+AGG 0.629986 2.1:-68813223 MS.gene002643:intron
GACCTGAGCAATTATATAAG+CGG 0.630532 2.1:+68813896 None:intergenic
TTGCTCACACTACCACCGGA+AGG 0.656735 2.1:-68814485 MS.gene002643:CDS
TCCGGTGGTAGTGTGAGCAA+TGG 0.668876 2.1:+68814488 None:intergenic
CTTCAATGGAAACCTTCCGG+TGG 0.695539 2.1:+68814473 None:intergenic
TAGTTGGTAGCAGAAGTGGT+GGG 0.737512 2.1:-68814675 MS.gene002643:CDS
AGTGTGAGCAATGGTGACAG+CGG 0.739883 2.1:+68814497 None:intergenic
AGTTGCCACTGATAATAGAG+CGG 0.742875 2.1:-68813724 MS.gene002643:intron
GTGGTTATGAATGTAAACGA+TGG 0.751966 2.1:-68814854 MS.gene002643:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATAAAAATTAATAATATTT+TGG + chr2.1:68813963-68813982 None:intergenic 0.0%
!!! AAAAAATTAATTGTTGTTTA+TGG - chr2.1:68813144-68813163 MS.gene002643:CDS 10.0%
!!! ATTTTTTTTTTTTAAATGCT+TGG - chr2.1:68814200-68814219 MS.gene002643:intron 10.0%
!!! TTTATTTAATTTTTTCTTGT+AGG - chr2.1:68813977-68813996 MS.gene002643:intron 10.0%
!! AAATGAATAATATTAGACAA+AGG + chr2.1:68814436-68814455 None:intergenic 15.0%
!! TTATGATATAATATTTGGTA+AGG + chr2.1:68814551-68814570 None:intergenic 15.0%
!!! GCATTTTATGATATAATATT+TGG + chr2.1:68814556-68814575 None:intergenic 15.0%
!!! TTTTATTTATTGCTTCAGAT+TGG - chr2.1:68814453-68814472 MS.gene002643:intron 20.0%
! ATGTTTATACATCTAGTCAA+TGG + chr2.1:68814328-68814347 None:intergenic 25.0%
! TAGAGGAATATGGATATATA+TGG - chr2.1:68814753-68814772 MS.gene002643:intron 25.0%
! TATTCTATTGGTCATATATC+TGG - chr2.1:68813365-68813384 MS.gene002643:intron 25.0%
! TCTCTCTTAAGTTATTTGAT+CGG - chr2.1:68813503-68813522 MS.gene002643:intron 25.0%
! TGTTTATACATCTAGTCAAT+GGG + chr2.1:68814327-68814346 None:intergenic 25.0%
!! CATTGATTGTTGAATATAGT+TGG - chr2.1:68813208-68813227 MS.gene002643:CDS 25.0%
!!! AATATTTTGGACTGCAAAAA+TGG + chr2.1:68813950-68813969 None:intergenic 25.0%
!!! AGCTAAGAGTTTAAAGTTTT+GGG - chr2.1:68813620-68813639 MS.gene002643:intron 25.0%
ACATTCTTCTTGATATTTGC+TGG - chr2.1:68813248-68813267 MS.gene002643:intron 30.0%
ACCATCAATATAGAGGAATA+TGG - chr2.1:68814743-68814762 MS.gene002643:intron 30.0%
TAAATGCTTAGAGTAACAGT+TGG - chr2.1:68813686-68813705 MS.gene002643:intron 30.0%
TATTTCCTTCTTCTTCACAT+AGG + chr2.1:68813874-68813893 None:intergenic 30.0%
TCCATATTCCTCTATATTGA+TGG + chr2.1:68814747-68814766 None:intergenic 30.0%
TTAAGTTATTTGATCGGAGA+TGG - chr2.1:68813509-68813528 MS.gene002643:intron 30.0%
! AAAATCACCTTTTGCAAAAG+AGG + chr2.1:68813114-68813133 None:intergenic 30.0%
! AATAAAGGTGCAATGTTACA+AGG + chr2.1:68813752-68813771 None:intergenic 30.0%
! TTGTATTTTACCTGCTTCAA+TGG + chr2.1:68813443-68813462 None:intergenic 30.0%
!! ATGGTATTGGTCTATTCTAT+TGG - chr2.1:68813353-68813372 MS.gene002643:intron 30.0%
!! GAGCTAAGAGTTTAAAGTTT+TGG - chr2.1:68813619-68813638 MS.gene002643:intron 30.0%
!! GCTAAGAGTTTAAAGTTTTG+GGG - chr2.1:68813621-68813640 MS.gene002643:intron 30.0%
!!! GTTACATGTTTTAGTGAGAA+AGG - chr2.1:68814622-68814641 MS.gene002643:CDS 30.0%
AAGAGTTCTTCATTCCTCAA+AGG - chr2.1:68814859-68814878 MS.gene002643:CDS 35.0%
AATTACCGCTCTATTATCAG+TGG + chr2.1:68814183-68814202 None:intergenic 35.0%
ACCTGAGCAATTATATAAGC+GGG + chr2.1:68814005-68814024 None:intergenic 35.0%
AGAAGAAGGAAATAGTTGGT+AGG - chr2.1:68813880-68813899 MS.gene002643:CDS 35.0%
ATAATTATAGAATGGGCCTC+AGG + chr2.1:68814398-68814417 None:intergenic 35.0%
ATTGCTTCAGATTGGTGAAT+TGG - chr2.1:68814461-68814480 MS.gene002643:intron 35.0%
ATTGTGCACCATCAATATAG+AGG - chr2.1:68814736-68814755 MS.gene002643:intron 35.0%
CAAACTCATATTTAGTGGCA+AGG - chr2.1:68814055-68814074 MS.gene002643:intron 35.0%
CCAACTAATGCTTCAAACAT+AGG + chr2.1:68813918-68813937 None:intergenic 35.0%
CTGGCTTATTTGTGATTCTA+AGG + chr2.1:68814825-68814844 None:intergenic 35.0%
GACCTGAGCAATTATATAAG+CGG + chr2.1:68814006-68814025 None:intergenic 35.0%
GCTCGATGTAGTAACAAAAA+GGG - chr2.1:68813814-68813833 MS.gene002643:CDS 35.0%
GCTCTCAAACTCATATTTAG+TGG - chr2.1:68814050-68814069 MS.gene002643:intron 35.0%
GTGAAGAAGAAGGAAATAGT+TGG - chr2.1:68813876-68813895 MS.gene002643:CDS 35.0%
GTGGTTATGAATGTAAACGA+TGG - chr2.1:68813045-68813064 MS.gene002643:CDS 35.0%
TACCTTATGTTCGTCATTTC+TGG - chr2.1:68814152-68814171 MS.gene002643:intron 35.0%
TCAAACATAGGCCCAAATAA+CGG + chr2.1:68813906-68813925 None:intergenic 35.0%
TCCTGGAATTGCAATTGTTT+GGG - chr2.1:68813319-68813338 MS.gene002643:intron 35.0%
TCTTCATTCCTCAAAGGTTT+AGG - chr2.1:68814865-68814884 MS.gene002643:CDS 35.0%
TGATATTAGCAATGGAAAGC+TGG - chr2.1:68813020-68813039 MS.gene002643:CDS 35.0%
TGCTCGATGTAGTAACAAAA+AGG - chr2.1:68813813-68813832 MS.gene002643:CDS 35.0%
TTACCTTTAAATCAGTCCTG+AGG - chr2.1:68814379-68814398 MS.gene002643:intron 35.0%
TTCAACCTATGTGAAGAAGA+AGG - chr2.1:68813866-68813885 MS.gene002643:CDS 35.0%
TTCCTGGAATTGCAATTGTT+TGG - chr2.1:68813318-68813337 MS.gene002643:intron 35.0%
TTTGAGGAATGAAGAACTCT+TGG + chr2.1:68814860-68814879 None:intergenic 35.0%
! ACATAGGTTGAAACTTGCTT+TGG + chr2.1:68813858-68813877 None:intergenic 35.0%
! CCTATGTTTGAAGCATTAGT+TGG - chr2.1:68813915-68813934 MS.gene002643:intron 35.0%
! TCATGTTCCTCTTTTGCAAA+AGG - chr2.1:68813104-68813123 MS.gene002643:CDS 35.0%
! TTCTTGATATTTGCTGGATG+TGG - chr2.1:68813254-68813273 MS.gene002643:intron 35.0%
!! AATATAGTTGGTAGCAGAAG+TGG - chr2.1:68813220-68813239 MS.gene002643:intron 35.0%
!! ATGCTAAATGTGTTGTTTGC+GGG - chr2.1:68814510-68814529 MS.gene002643:CDS 35.0%
!! CATGCTAAATGTGTTGTTTG+CGG - chr2.1:68814509-68814528 MS.gene002643:CDS 35.0%
!! TATATGGTGTCACCTATTCT+TGG - chr2.1:68814769-68814788 MS.gene002643:intron 35.0%
ACCCGCTTATATAATTGCTC+AGG - chr2.1:68814001-68814020 MS.gene002643:intron 40.0%
AGTTGCCACTGATAATAGAG+CGG - chr2.1:68814175-68814194 MS.gene002643:intron 40.0%
ATATTTGACAGACCCATCAC+AGG - chr2.1:68814676-68814695 MS.gene002643:intron 40.0%
ATGAATCCAGCAAGAAGCTT+AGG - chr2.1:68814706-68814725 MS.gene002643:intron 40.0%
ATTCATTGATGCTCCTGTGA+TGG + chr2.1:68814692-68814711 None:intergenic 40.0%
ATTCGACCACAAAAGCTTGA+TGG + chr2.1:68814118-68814137 None:intergenic 40.0%
CCTGGAATTGCAATTGTTTG+GGG - chr2.1:68813320-68813339 MS.gene002643:intron 40.0%
CGATGTAGTAACAAAAAGGG+TGG - chr2.1:68813817-68813836 MS.gene002643:CDS 40.0%
CTCCAGAAATGACGAACATA+AGG + chr2.1:68814157-68814176 None:intergenic 40.0%
GAGATTGTAGGTGGTTGAAA+AGG - chr2.1:68813552-68813571 MS.gene002643:intron 40.0%
GATAAAGTAGTGACACTTCC+TGG - chr2.1:68813302-68813321 MS.gene002643:intron 40.0%
GGCAAGGAAAATCAATTTGC+AGG - chr2.1:68814071-68814090 MS.gene002643:intron 40.0%
TATATAATTGCTCAGGTCGC+TGG - chr2.1:68814008-68814027 MS.gene002643:intron 40.0%
TCAATTTGCAGGAACACTTC+CGG - chr2.1:68814082-68814101 MS.gene002643:intron 40.0%
TGAATCCAGCAAGAAGCTTA+GGG - chr2.1:68814707-68814726 MS.gene002643:intron 40.0%
TTCATTGATGCTCCTGTGAT+GGG + chr2.1:68814691-68814710 None:intergenic 40.0%
! CTCAAAGGTTTAGGAAGCAT+GGG - chr2.1:68814874-68814893 MS.gene002643:CDS 40.0%
!! ATAGTTGGTAGGCCGTTATT+TGG - chr2.1:68813891-68813910 MS.gene002643:CDS 40.0%
!! GGGACTTGTTGTTATGGTAT+TGG - chr2.1:68813340-68813359 MS.gene002643:intron 40.0%
!! TAGTTGGTAGGCCGTTATTT+GGG - chr2.1:68813892-68813911 MS.gene002643:CDS 40.0%
!! TATTGATGGTGCACAATAGC+AGG + chr2.1:68814733-68814752 None:intergenic 40.0%
!! TGCTAAATGTGTTGTTTGCG+GGG - chr2.1:68814511-68814530 MS.gene002643:CDS 40.0%
!! TGTTTGGGGACTTGTTGTTA+TGG - chr2.1:68813334-68813353 MS.gene002643:intron 40.0%
AAAGGGTGGTGTGAAGAGTA+TGG - chr2.1:68813831-68813850 MS.gene002643:CDS 45.0%
AAGAACGTACCTAGGAGGAT+AGG - chr2.1:68813648-68813667 MS.gene002643:intron 45.0%
ATCGGAGATGGTCAGAAGAA+CGG - chr2.1:68813521-68813540 MS.gene002643:intron 45.0%
CCATGCTTCCTAAACCTTTG+AGG + chr2.1:68814876-68814895 None:intergenic 45.0%
CCCCAAACAATTGCAATTCC+AGG + chr2.1:68813323-68813342 None:intergenic 45.0%
CCTCAAAGGTTTAGGAAGCA+TGG - chr2.1:68814873-68814892 MS.gene002643:CDS 45.0%
CTGCTTCAATGGAAACCTTC+CGG + chr2.1:68813432-68813451 None:intergenic 45.0%
CTTCAGATTGGTGAATTGGC+TGG - chr2.1:68814465-68814484 MS.gene002643:intron 45.0%
GGTACCTGCAAAAGACACAT+TGG - chr2.1:68813579-68813598 MS.gene002643:intron 45.0%
GTCACCTATTCTTGGAGCTT+TGG - chr2.1:68814777-68814796 MS.gene002643:intron 45.0%
GTTAGAAGAACGTACCTAGG+AGG - chr2.1:68813643-68813662 MS.gene002643:intron 45.0%
TAGCAATGGAAAGCTGGATG+TGG - chr2.1:68813026-68813045 MS.gene002643:CDS 45.0%
TCAACCACCTACAATCTCGT+CGG + chr2.1:68813550-68813569 None:intergenic 45.0%
TTGCACCTTTATTGCACGAG+AGG - chr2.1:68813759-68813778 MS.gene002643:CDS 45.0%
! AACGCCAATGTGTCTTTTGC+AGG + chr2.1:68813586-68813605 None:intergenic 45.0%
! ATTTGCTGGATGTGGTTCTG+TGG - chr2.1:68813262-68813281 MS.gene002643:intron 45.0%
! GTTTGAAGCATTAGTTGGCG+AGG - chr2.1:68813920-68813939 MS.gene002643:intron 45.0%
! TTCGGACCATCAAGCTTTTG+TGG - chr2.1:68814109-68814128 MS.gene002643:intron 45.0%
!! AGTAACAGTTGGTGAGCTGT+TGG - chr2.1:68813697-68813716 MS.gene002643:intron 45.0%
!! ATAGTTGGTAGCAGAAGTGG+TGG - chr2.1:68813223-68813242 MS.gene002643:intron 45.0%
!! TAGTTGGTAGCAGAAGTGGT+GGG - chr2.1:68813224-68813243 MS.gene002643:intron 45.0%
!! ATATTTAAATAATTATAGAA+TGG + chr2.1:68814406-68814425 None:intergenic 5.0%
!! TAAATAAAAATGTATAATAT+TGG + chr2.1:68814589-68814608 None:intergenic 5.0%
!! TATTTAAATAATTATAGAAT+GGG + chr2.1:68814405-68814424 None:intergenic 5.0%
!!! ATTATACATTTTTATTTAAT+AGG - chr2.1:68814591-68814610 MS.gene002643:CDS 5.0%
!!! TTATACATTTTTATTTAATA+GGG - chr2.1:68814592-68814611 MS.gene002643:CDS 5.0%
ACCATTGCTCACACTACCAC+CGG - chr2.1:68813410-68813429 MS.gene002643:CDS 50.0%
ACGGTATCCGACGAGATTGT+AGG - chr2.1:68813540-68813559 MS.gene002643:intron 50.0%
AGAGCTTCTCCTATCCTCCT+AGG + chr2.1:68813660-68813679 None:intergenic 50.0%
AGTGTGAGCAATGGTGACAG+CGG + chr2.1:68813405-68813424 None:intergenic 50.0%
CACCTTTATTGCACGAGAGG+AGG - chr2.1:68813762-68813781 MS.gene002643:CDS 50.0%
CCAGCCAAAGCTCCAAGAAT+AGG + chr2.1:68814784-68814803 None:intergenic 50.0%
CGGAAGGTTTCCATTGAAGC+AGG - chr2.1:68813430-68813449 MS.gene002643:CDS 50.0%
CTTCAATGGAAACCTTCCGG+TGG + chr2.1:68813429-68813448 None:intergenic 50.0%
GAATTGGCTGGACTTGCAGT+TGG - chr2.1:68814477-68814496 MS.gene002643:CDS 50.0%
GGGGTTAGAAGAACGTACCT+AGG - chr2.1:68813640-68813659 MS.gene002643:intron 50.0%
GTAGGTGGTTGAAAAGGCAG+AGG - chr2.1:68813558-68813577 MS.gene002643:intron 50.0%
GTATCCGACGAGATTGTAGG+TGG - chr2.1:68813543-68813562 MS.gene002643:intron 50.0%
TGTTGGTCGACGGTTACAGA+TGG - chr2.1:68813714-68813733 MS.gene002643:intron 50.0%
! CCTATTCTTGGAGCTTTGGC+TGG - chr2.1:68814781-68814800 MS.gene002643:intron 50.0%
! GGGCCTCAGGACTGATTTAA+AGG + chr2.1:68814385-68814404 None:intergenic 50.0%
! TGGAGCTTTGGCTGGTACAT+GGG - chr2.1:68814789-68814808 MS.gene002643:intron 50.0%
! TTGGAGCTTTGGCTGGTACA+TGG - chr2.1:68814788-68814807 MS.gene002643:intron 50.0%
CGCCTCCTCTCGTGCAATAA+AGG + chr2.1:68813767-68813786 None:intergenic 55.0%
CTCTTGGTGAGCTCACGTAC+TGG + chr2.1:68814844-68814863 None:intergenic 55.0%
GTGTGAGCAATGGTGACAGC+GGG + chr2.1:68813404-68813423 None:intergenic 55.0%
TGGTCGACGGTTACAGATGG+CGG - chr2.1:68813717-68813736 MS.gene002643:intron 55.0%
TTGCTCACACTACCACCGGA+AGG - chr2.1:68813414-68813433 MS.gene002643:CDS 55.0%
TTTGCAGGAACACTTCCGGC+TGG - chr2.1:68814086-68814105 MS.gene002643:intron 55.0%
! AGGAACACTTCCGGCTGGTT+CGG - chr2.1:68814091-68814110 MS.gene002643:intron 55.0%
! GTTGGTGAGCTGTTGGTCGA+CGG - chr2.1:68813704-68813723 MS.gene002643:intron 55.0%
! TCCGGTGGTAGTGTGAGCAA+TGG + chr2.1:68813414-68813433 None:intergenic 55.0%
! TGCTGGATGTGGTTCTGTGG+TGG - chr2.1:68813265-68813284 MS.gene002643:intron 55.0%
!! AGAGGAGGCGTTACAGACTC+AGG - chr2.1:68813777-68813796 MS.gene002643:CDS 55.0%
GCAGGCCCTAAGCTTCTTGC+TGG + chr2.1:68814715-68814734 None:intergenic 60.0%
! GCTTGATGGTCCGAACCAGC+CGG + chr2.1:68814104-68814123 None:intergenic 60.0%


Chromosome Type Strat End Strand Name
chr2.1 gene 68813015 68814906 68813015 ID=MS.gene002643
chr2.1 mRNA 68813015 68814906 68813015 ID=MS.gene002643.t1;Parent=MS.gene002643
chr2.1 exon 68814796 68814906 68814796 ID=MS.gene002643.t1.exon1;Parent=MS.gene002643.t1
chr2.1 CDS 68814796 68814906 68814796 ID=cds.MS.gene002643.t1;Parent=MS.gene002643.t1
chr2.1 exon 68814470 68814694 68814470 ID=MS.gene002643.t1.exon2;Parent=MS.gene002643.t1
chr2.1 CDS 68814470 68814694 68814470 ID=cds.MS.gene002643.t1;Parent=MS.gene002643.t1
chr2.1 exon 68813725 68813922 68813725 ID=MS.gene002643.t1.exon3;Parent=MS.gene002643.t1
chr2.1 CDS 68813725 68813922 68813725 ID=cds.MS.gene002643.t1;Parent=MS.gene002643.t1
chr2.1 exon 68813389 68813450 68813389 ID=MS.gene002643.t1.exon4;Parent=MS.gene002643.t1
chr2.1 CDS 68813389 68813450 68813389 ID=cds.MS.gene002643.t1;Parent=MS.gene002643.t1
chr2.1 exon 68813015 68813234 68813015 ID=MS.gene002643.t1.exon5;Parent=MS.gene002643.t1
chr2.1 CDS 68813015 68813234 68813015 ID=cds.MS.gene002643.t1;Parent=MS.gene002643.t1
Gene Sequence

>MS.gene002643

ATGGGTGATATTAGCAATGGAAAGCTGGATGTGGTTATGAATGTAAACGATGGTGCAACAAAAATATGTGACGACACAAGCATTGATGATCATGTTCCTCTTTTGCAAAAGGTGATTTTTTTATCTTTCAAAAAATTAATTGTTGTTTATGGTTAATTAATTAGATCTTTTGACTAAAAACATGCATGTGTTGCATTGATTGTTGAATATAGTTGGTAGCAGAAGTGGTGGGAACATTCTTCTTGATATTTGCTGGATGTGGTTCTGTGGTGGTGAACATTAACAATGATAAAGTAGTGACACTTCCTGGAATTGCAATTGTTTGGGGACTTGTTGTTATGGTATTGGTCTATTCTATTGGTCATATATCTGGTGCTCATTTCAATCCCGCTGTCACCATTGCTCACACTACCACCGGAAGGTTTCCATTGAAGCAGGTAAAATACAAAACACAAGAACTATAATTCATATTAAGATAAACATAATTTTCTCTCTTAAGTTATTTGATCGGAGATGGTCAGAAGAACGGTATCCGACGAGATTGTAGGTGGTTGAAAAGGCAGAGGTACCTGCAAAAGACACATTGGCGTTCAAGTCAGCATGAGAGCTAAGAGTTTAAAGTTTTGGGGTTAGAAGAACGTACCTAGGAGGATAGGAGAAGCTCTCTTATATAAATGCTTAGAGTAACAGTTGGTGAGCTGTTGGTCGACGGTTACAGATGGCGGTGTTTGTAACCTTGTAACATTGCACCTTTATTGCACGAGAGGAGGCGTTACAGACTCAGGAGAGATGAACGTTTGCTCGATGTAGTAACAAAAAGGGTGGTGTGAAGAGTATGGACCAAAGCAAGTTTCAACCTATGTGAAGAAGAAGGAAATAGTTGGTAGGCCGTTATTTGGGCCTATGTTTGAAGCATTAGTTGGCGAGGACAACCATTTTTGCAGTCCAAAATATTATTAATTTTTATTTAATTTTTTCTTGTAGGTACCCGCTTATATAATTGCTCAGGTCGCTGGCTCAACACTTGCAAGTGAAGCTCTCAAACTCATATTTAGTGGCAAGGAAAATCAATTTGCAGGAACACTTCCGGCTGGTTCGGACCATCAAGCTTTTGTGGTCGAATTTATTATCACTTTCTACCTTATGTTCGTCATTTCTGGAGTTGCCACTGATAATAGAGCGGTAATTTTTTTTTTTTAAATGCTTGGTTGATAATAGTAATTGATAATTATATTTCTATTGATCATTTTGATTAAGATAAAATTGTGACTCAAGTTAATTGACTATTTCTTTCAACAACAATTAAAAGCCCATTGACTAGATGTATAAACATATTTATAATGTTAAAATCACTTCAATAAATGTTACCTTTAAATCAGTCCTGAGGCCCATTCTATAATTATTTAAATATCATTTAACCTTTGTCTAATATTATTCATTTTATTTATTGCTTCAGATTGGTGAATTGGCTGGACTTGCAGTTGGATCTACAGTCATGCTAAATGTGTTGTTTGCGGGGTATAGATCTCAAAACCTTACCAAATATTATATCATAAAATGCATGCTTTGCACCAATATTATACATTTTTATTTAATAGGGTTAATATGTTACATGTTTTAGTGAGAAAGGTTCAAATTAAATCTTACTTTTGAGTGAAAATATATTTGACAGACCCATCACAGGAGCATCAATGAATCCAGCAAGAAGCTTAGGGCCTGCTATTGTGCACCATCAATATAGAGGAATATGGATATATATGGTGTCACCTATTCTTGGAGCTTTGGCTGGTACATGGGCATACACTTTCCTTAGAATCACAAATAAGCCAGTACGTGAGCTCACCAAGAGTTCTTCATTCCTCAAAGGTTTAGGAAGCATGGGAGCTGAGTGA
Protein sequence

>MS.gene002643.t1

MGDISNGKLDVVMNVNDGATKICDDTSIDDHVPLLQKLVAEVVGTFFLIFAGCGSVVVNINNDKVVTLPGIAIVWGLVVMVLVYSIGHISGAHFNPAVTIAHTTTGRFPLKQVPAYIIAQVAGSTLASEALKLIFSGKENQFAGTLPAGSDHQAFVVEFIITFYLMFVISGVATDNRAIGELAGLAVGSTVMLNVLFAGPITGASMNPARSLGPAIVHHQYRGIWIYMVSPILGALAGTWAYTFLRITNKPVRELTKSSSFLKGLGSMGAE