Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene27852.t1 | XP_003629862.1 | 98.2 | 276 | 5 | 0 | 1 | 276 | 1 | 276 | 2.90E-147 | 531.2 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene27852.t1 | P08995 | 73.4 | 263 | 70 | 0 | 4 | 266 | 3 | 265 | 1.0e-108 | 394.4 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene27852.t1 | Q8W4T7 | 98.2 | 276 | 5 | 0 | 1 | 276 | 1 | 276 | 2.1e-147 | 531.2 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene060879 | MS.gene27852 | 0.808524 | 2.97E-50 | -1.69E-46 |
PPI:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene27852.t1 | MTR_8g087710 | 98.188 | 276 | 5 | 0 | 1 | 276 | 1 | 276 | 0.0 | 550 |
MS.gene27852.t1 | MTR_8g087720 | 73.585 | 265 | 70 | 0 | 4 | 268 | 3 | 267 | 7.63e-151 | 422 |
MS.gene27852.t1 | MTR_2g017570 | 71.218 | 271 | 78 | 0 | 4 | 274 | 3 | 273 | 3.61e-144 | 405 |
MS.gene27852.t1 | MTR_2g017610 | 71.218 | 271 | 78 | 0 | 4 | 274 | 3 | 273 | 2.30e-143 | 404 |
MS.gene27852.t1 | MTR_2g017590 | 68.340 | 259 | 82 | 0 | 13 | 271 | 10 | 268 | 4.59e-135 | 382 |
MS.gene27852.t1 | MTR_2g017660 | 64.706 | 272 | 89 | 2 | 4 | 268 | 3 | 274 | 1.20e-130 | 371 |
MS.gene27852.t1 | MTR_2g017620 | 65.789 | 266 | 91 | 0 | 4 | 269 | 3 | 268 | 1.86e-128 | 365 |
MS.gene27852.t1 | MTR_2g017620 | 67.323 | 254 | 83 | 0 | 16 | 269 | 1 | 254 | 5.99e-127 | 361 |
MS.gene27852.t1 | MTR_4g084880 | 53.875 | 271 | 119 | 2 | 9 | 273 | 1 | 271 | 2.44e-106 | 310 |
MS.gene27852.t1 | MTR_8g087720 | 72.864 | 199 | 54 | 0 | 4 | 202 | 3 | 201 | 5.37e-106 | 306 |
MS.gene27852.t1 | MTR_2g017620 | 70.588 | 187 | 55 | 0 | 83 | 269 | 1 | 187 | 4.52e-95 | 278 |
MS.gene27852.t1 | MTR_8g087720 | 67.513 | 197 | 63 | 1 | 4 | 200 | 3 | 198 | 6.26e-93 | 273 |
MS.gene27852.t1 | MTR_5g079570 | 50.775 | 258 | 119 | 4 | 1 | 254 | 1 | 254 | 2.66e-85 | 256 |
MS.gene27852.t1 | MTR_3g008920 | 53.556 | 239 | 108 | 2 | 19 | 257 | 8 | 243 | 3.29e-83 | 251 |
MS.gene27852.t1 | MTR_4g006730 | 53.680 | 231 | 102 | 2 | 35 | 263 | 71 | 298 | 6.58e-78 | 238 |
MS.gene27852.t1 | MTR_2g104940 | 52.863 | 227 | 102 | 2 | 39 | 263 | 80 | 303 | 4.45e-76 | 234 |
MS.gene27852.t1 | MTR_7g010650 | 48.148 | 216 | 111 | 1 | 37 | 252 | 35 | 249 | 1.24e-72 | 224 |
MS.gene27852.t1 | MTR_4g006730 | 53.738 | 214 | 94 | 2 | 52 | 263 | 1 | 211 | 4.05e-72 | 221 |
MS.gene27852.t1 | MTR_4g006630 | 53.738 | 214 | 94 | 2 | 52 | 263 | 1 | 211 | 4.98e-72 | 221 |
MS.gene27852.t1 | MTR_1g097840 | 49.362 | 235 | 108 | 3 | 34 | 260 | 69 | 300 | 2.47e-69 | 216 |
MS.gene27852.t1 | MTR_5g063930 | 46.442 | 267 | 117 | 8 | 4 | 261 | 10 | 259 | 1.35e-66 | 208 |
MS.gene27852.t1 | MTR_4g006730 | 48.259 | 201 | 87 | 3 | 35 | 233 | 71 | 256 | 3.82e-51 | 169 |
MS.gene27852.t1 | MTR_1g097840 | 51.462 | 171 | 78 | 2 | 34 | 202 | 69 | 236 | 1.42e-46 | 157 |
MS.gene27852.t1 | MTR_1g070385 | 40.271 | 221 | 131 | 1 | 33 | 253 | 56 | 275 | 2.35e-46 | 166 |
MS.gene27852.t1 | MTR_7g010650 | 45.890 | 146 | 78 | 1 | 37 | 182 | 35 | 179 | 3.03e-40 | 138 |
MS.gene27852.t1 | MTR_4g006650 | 50.694 | 144 | 57 | 3 | 40 | 181 | 5 | 136 | 3.11e-32 | 121 |
MS.gene27852.t1 | MTR_8g013680 | 33.028 | 218 | 139 | 3 | 38 | 248 | 18 | 235 | 1.47e-26 | 104 |
MS.gene27852.t1 | MTR_2g101370 | 32.645 | 242 | 145 | 7 | 34 | 264 | 15 | 249 | 3.00e-25 | 100 |
MS.gene27852.t1 | MTR_5g012810 | 33.047 | 233 | 139 | 5 | 38 | 257 | 18 | 246 | 1.04e-24 | 99.4 |
MS.gene27852.t1 | MTR_1g006490 | 31.120 | 241 | 145 | 8 | 13 | 246 | 3 | 229 | 2.38e-23 | 95.9 |
MS.gene27852.t1 | MTR_1g077540 | 32.444 | 225 | 143 | 5 | 38 | 254 | 20 | 243 | 3.01e-23 | 95.9 |
MS.gene27852.t1 | MTR_6g069040 | 32.159 | 227 | 141 | 5 | 38 | 254 | 20 | 243 | 8.05e-23 | 94.7 |
MS.gene27852.t1 | MTR_1g006590 | 31.102 | 254 | 148 | 11 | 13 | 255 | 3 | 240 | 1.31e-22 | 94.0 |
MS.gene27852.t1 | MTR_3g118010 | 31.222 | 221 | 137 | 5 | 37 | 242 | 35 | 255 | 1.53e-22 | 94.4 |
MS.gene27852.t1 | MTR_7g103030 | 33.180 | 217 | 135 | 6 | 38 | 246 | 20 | 234 | 4.37e-21 | 89.7 |
MS.gene27852.t1 | MTR_1g115405 | 32.759 | 232 | 142 | 7 | 38 | 257 | 20 | 249 | 7.39e-21 | 89.4 |
MS.gene27852.t1 | MTR_2g094270 | 30.837 | 227 | 133 | 6 | 39 | 242 | 40 | 265 | 1.47e-20 | 89.4 |
MS.gene27852.t1 | MTR_7g101190 | 30.357 | 224 | 133 | 6 | 37 | 238 | 37 | 259 | 4.42e-20 | 87.8 |
MS.gene27852.t1 | MTR_4g063090 | 32.287 | 223 | 142 | 5 | 44 | 258 | 26 | 247 | 5.25e-20 | 87.0 |
MS.gene27852.t1 | MTR_4g415300 | 28.409 | 264 | 164 | 8 | 1 | 248 | 26 | 280 | 1.06e-19 | 87.0 |
MS.gene27852.t1 | MTR_8g098375 | 28.369 | 282 | 173 | 9 | 2 | 259 | 11 | 287 | 2.02e-19 | 85.9 |
MS.gene27852.t1 | MTR_4g059390 | 30.568 | 229 | 134 | 7 | 37 | 242 | 37 | 263 | 1.01e-18 | 84.0 |
MS.gene27852.t1 | MTR_5g010150 | 29.289 | 239 | 145 | 7 | 30 | 248 | 43 | 277 | 1.16e-18 | 84.0 |
MS.gene27852.t1 | MTR_5g082070 | 29.707 | 239 | 145 | 7 | 37 | 256 | 53 | 287 | 1.28e-18 | 84.0 |
MS.gene27852.t1 | MTR_3g070210 | 26.236 | 263 | 177 | 6 | 10 | 256 | 26 | 287 | 2.38e-18 | 83.2 |
MS.gene27852.t1 | MTR_2g060360 | 30.045 | 223 | 148 | 4 | 38 | 253 | 18 | 239 | 1.48e-17 | 80.5 |
MS.gene27852.t1 | MTR_2g094270 | 30.435 | 207 | 123 | 5 | 39 | 225 | 40 | 245 | 3.11e-17 | 79.7 |
MS.gene27852.t1 | MTR_1g095070 | 30.220 | 182 | 109 | 4 | 82 | 248 | 25 | 203 | 1.37e-16 | 77.0 |
MS.gene27852.t1 | MTR_3g070210 | 25.652 | 230 | 158 | 4 | 10 | 226 | 26 | 255 | 1.25e-14 | 72.4 |
MS.gene27852.t1 | MTR_7g023350 | 27.706 | 231 | 160 | 3 | 38 | 261 | 20 | 250 | 2.37e-14 | 71.2 |
MS.gene27852.t1 | MTR_1g095070 | 31.410 | 156 | 92 | 3 | 82 | 225 | 25 | 177 | 5.13e-14 | 69.3 |
MS.gene27852.t1 | MTR_4g415300 | 28.177 | 181 | 122 | 5 | 30 | 203 | 47 | 226 | 8.88e-11 | 60.8 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene27852.t1 | AT4G18910 | 71.486 | 249 | 64 | 1 | 33 | 274 | 46 | 294 | 3.05e-131 | 374 |
MS.gene27852.t1 | AT4G19030 | 68.045 | 266 | 78 | 1 | 8 | 266 | 24 | 289 | 1.53e-128 | 367 |
MS.gene27852.t1 | AT5G37820 | 60.000 | 235 | 94 | 0 | 39 | 273 | 43 | 277 | 2.31e-101 | 297 |
MS.gene27852.t1 | AT5G37820 | 60.000 | 235 | 94 | 0 | 39 | 273 | 79 | 313 | 6.09e-101 | 298 |
MS.gene27852.t1 | AT5G37810 | 53.333 | 270 | 119 | 2 | 3 | 266 | 2 | 270 | 6.03e-100 | 294 |
MS.gene27852.t1 | AT1G31885 | 52.399 | 271 | 118 | 2 | 1 | 260 | 1 | 271 | 2.47e-98 | 291 |
MS.gene27852.t1 | AT2G34390 | 53.101 | 258 | 113 | 2 | 17 | 267 | 26 | 282 | 7.17e-91 | 271 |
MS.gene27852.t1 | AT4G18910 | 73.446 | 177 | 40 | 1 | 33 | 202 | 46 | 222 | 1.13e-89 | 265 |
MS.gene27852.t1 | AT4G19030 | 65.672 | 201 | 62 | 1 | 8 | 201 | 24 | 224 | 6.28e-88 | 261 |
MS.gene27852.t1 | AT1G31885 | 55.760 | 217 | 89 | 1 | 51 | 260 | 1 | 217 | 2.11e-86 | 259 |
MS.gene27852.t1 | AT2G34390 | 53.782 | 238 | 102 | 2 | 37 | 267 | 4 | 240 | 2.53e-85 | 255 |
MS.gene27852.t1 | AT4G19030 | 63.187 | 182 | 60 | 1 | 8 | 182 | 24 | 205 | 5.09e-76 | 231 |
MS.gene27852.t1 | AT1G80760 | 50.820 | 244 | 113 | 3 | 12 | 253 | 55 | 293 | 3.09e-73 | 226 |
MS.gene27852.t1 | AT4G10380 | 48.819 | 254 | 119 | 3 | 15 | 260 | 54 | 304 | 1.03e-72 | 225 |
MS.gene27852.t1 | AT2G34390 | 55.959 | 193 | 77 | 2 | 17 | 202 | 26 | 217 | 1.40e-68 | 212 |
MS.gene27852.t1 | AT2G34390 | 55.429 | 175 | 70 | 2 | 17 | 184 | 26 | 199 | 6.59e-62 | 195 |
MS.gene27852.t1 | AT3G06100 | 38.057 | 247 | 150 | 3 | 10 | 254 | 16 | 261 | 7.56e-48 | 160 |
MS.gene27852.t1 | AT3G06100 | 40.654 | 214 | 125 | 2 | 42 | 254 | 1 | 213 | 3.85e-47 | 157 |
MS.gene27852.t1 | AT1G31885 | 48.936 | 141 | 65 | 2 | 1 | 134 | 1 | 141 | 1.55e-37 | 130 |
MS.gene27852.t1 | AT3G16240 | 33.476 | 233 | 137 | 6 | 30 | 248 | 7 | 235 | 2.62e-29 | 112 |
MS.gene27852.t1 | AT2G29870 | 52.688 | 93 | 44 | 0 | 154 | 246 | 20 | 112 | 7.25e-28 | 104 |
MS.gene27852.t1 | AT5G47450 | 32.636 | 239 | 151 | 4 | 30 | 258 | 10 | 248 | 1.79e-27 | 107 |
MS.gene27852.t1 | AT3G06100 | 38.298 | 141 | 85 | 2 | 115 | 254 | 41 | 180 | 2.98e-25 | 99.8 |
MS.gene27852.t1 | AT4G17340 | 30.252 | 238 | 156 | 4 | 30 | 257 | 10 | 247 | 1.40e-24 | 99.4 |
MS.gene27852.t1 | AT4G35100 | 31.579 | 228 | 141 | 5 | 30 | 242 | 29 | 256 | 2.33e-23 | 96.7 |
MS.gene27852.t1 | AT4G35100 | 31.579 | 228 | 141 | 5 | 30 | 242 | 29 | 256 | 2.33e-23 | 96.7 |
MS.gene27852.t1 | AT3G26520 | 33.486 | 218 | 138 | 3 | 38 | 248 | 21 | 238 | 7.32e-23 | 94.7 |
MS.gene27852.t1 | AT1G17810 | 34.286 | 175 | 111 | 2 | 91 | 261 | 86 | 260 | 4.94e-22 | 92.8 |
MS.gene27852.t1 | AT2G16850 | 30.769 | 221 | 138 | 5 | 37 | 242 | 34 | 254 | 5.01e-22 | 93.2 |
MS.gene27852.t1 | AT2G36830 | 34.434 | 212 | 131 | 4 | 38 | 241 | 20 | 231 | 9.51e-22 | 91.7 |
MS.gene27852.t1 | AT5G60660 | 29.362 | 235 | 143 | 6 | 36 | 248 | 36 | 269 | 6.31e-21 | 90.1 |
MS.gene27852.t1 | AT2G39010 | 29.060 | 234 | 143 | 6 | 37 | 248 | 36 | 268 | 9.85e-21 | 89.7 |
MS.gene27852.t1 | AT2G25810 | 32.420 | 219 | 135 | 7 | 38 | 248 | 18 | 231 | 2.80e-20 | 87.8 |
MS.gene27852.t1 | AT1G73190 | 35.542 | 166 | 103 | 3 | 92 | 254 | 87 | 251 | 2.85e-20 | 88.2 |
MS.gene27852.t1 | AT4G23400 | 28.629 | 248 | 155 | 6 | 30 | 259 | 44 | 287 | 6.72e-20 | 87.4 |
MS.gene27852.t1 | AT2G37170 | 28.879 | 232 | 142 | 6 | 39 | 248 | 37 | 267 | 1.04e-19 | 87.0 |
MS.gene27852.t1 | AT2G37170 | 28.879 | 232 | 142 | 6 | 39 | 248 | 80 | 310 | 1.22e-19 | 87.4 |
MS.gene27852.t1 | AT3G61430 | 29.150 | 247 | 151 | 7 | 30 | 257 | 43 | 284 | 1.48e-19 | 86.3 |
MS.gene27852.t1 | AT3G61430 | 29.150 | 247 | 151 | 7 | 30 | 257 | 43 | 284 | 1.48e-19 | 86.3 |
MS.gene27852.t1 | AT4G01470 | 35.465 | 172 | 107 | 3 | 80 | 248 | 67 | 237 | 2.77e-19 | 85.1 |
MS.gene27852.t1 | AT1G01620 | 29.412 | 238 | 145 | 5 | 30 | 248 | 43 | 276 | 2.94e-19 | 85.5 |
MS.gene27852.t1 | AT3G54820 | 28.326 | 233 | 146 | 5 | 37 | 248 | 36 | 268 | 3.63e-19 | 85.5 |
MS.gene27852.t1 | AT3G53420 | 28.755 | 233 | 145 | 6 | 37 | 248 | 37 | 269 | 4.28e-19 | 85.1 |
MS.gene27852.t1 | AT3G53420 | 28.755 | 233 | 145 | 6 | 37 | 248 | 37 | 269 | 4.28e-19 | 85.1 |
MS.gene27852.t1 | AT4G00430 | 27.509 | 269 | 170 | 6 | 2 | 248 | 12 | 277 | 4.45e-19 | 85.1 |
MS.gene27852.t1 | AT2G45960 | 28.745 | 247 | 152 | 7 | 30 | 257 | 43 | 284 | 7.40e-19 | 84.3 |
MS.gene27852.t1 | AT3G47440 | 29.224 | 219 | 145 | 4 | 38 | 248 | 22 | 238 | 2.82e-18 | 82.4 |
MS.gene27852.t1 | AT2G37180 | 28.448 | 232 | 143 | 6 | 39 | 248 | 37 | 267 | 1.20e-17 | 81.3 |
MS.gene27852.t1 | AT1G01620 | 31.720 | 186 | 107 | 4 | 69 | 238 | 13 | 194 | 1.43e-16 | 77.0 |
MS.gene27852.t1 | AT2G45960 | 30.476 | 210 | 126 | 5 | 30 | 223 | 43 | 248 | 2.06e-16 | 77.4 |
MS.gene27852.t1 | AT2G45960 | 30.476 | 210 | 126 | 5 | 30 | 223 | 43 | 248 | 2.12e-16 | 77.8 |
MS.gene27852.t1 | AT2G39010 | 29.936 | 157 | 96 | 4 | 37 | 180 | 36 | 191 | 9.08e-12 | 63.5 |
Find 72 sgRNAs with CRISPR-Local
Find 169 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TACCTTATGTTTACCATTTC+TGG | 0.053365 | 4.1:-13070861 | MS.gene27852:CDS |
ATATTTGTTGTCGCCGATTT+TGG | 0.136028 | 4.1:-13070425 | MS.gene27852:CDS |
TTCCAATTTCTTAAACTATT+TGG | 0.141022 | 4.1:+13070293 | None:intergenic |
TCCTGGGATTGCAATTGTTT+GGG | 0.194809 | 4.1:-13072758 | MS.gene27852:CDS |
TTCATTGATGCTCCTGTTAC+CGG | 0.292955 | 4.1:+13070505 | None:intergenic |
TTCCTGGGATTGCAATTGTT+TGG | 0.304422 | 4.1:-13072759 | MS.gene27852:CDS |
AAGGAGGTTTCCATTGTTAC+AGG | 0.315994 | 4.1:-13072647 | MS.gene27852:intron |
ACATATTTCTTGATATTTGC+AGG | 0.316106 | 4.1:-13072829 | MS.gene27852:CDS |
CTCTGTCCCTTTCTTGCAAA+AGG | 0.317695 | 4.1:-13072987 | MS.gene27852:intron |
TGTAGACCCAATTGCAATTC+CGG | 0.343788 | 4.1:+13070711 | None:intergenic |
CAAGAAAGGGACAGAGATAA+AGG | 0.377304 | 4.1:+13072994 | None:intergenic |
GACAACGTGGTAACACTTCC+TGG | 0.380447 | 4.1:-13072775 | MS.gene27852:CDS |
TACTCACTTGGTCATATCTC+TGG | 0.390477 | 4.1:-13072712 | MS.gene27852:CDS |
CACCACGTCCAGCTTCTTTG+AGG | 0.393717 | 4.1:+13070320 | None:intergenic |
TTATTTGACAGACCGGTAAC+AGG | 0.396494 | 4.1:-13070517 | MS.gene27852:intron |
TTGCTTAATGTGATGATTGC+AGG | 0.400582 | 4.1:-13070685 | MS.gene27852:CDS |
AATACAGTTAATAGCAGAAA+TGG | 0.417887 | 4.1:-13072857 | MS.gene27852:intron |
GCTGGTCCTAGAGTTCTAAC+CGG | 0.437239 | 4.1:+13070481 | None:intergenic |
GAGTTGGCCGGAATTGCAAT+TGG | 0.443767 | 4.1:-13070718 | MS.gene27852:CDS |
TTATATATCAGCTCAGCTCT+TGG | 0.447897 | 4.1:-13071006 | MS.gene27852:CDS |
CATGGGTCTACAACACTGTT+AGG | 0.451802 | 4.1:-13070387 | MS.gene27852:CDS |
CTTTGAGGAAGGATGCACTC+TGG | 0.452465 | 4.1:+13070335 | None:intergenic |
ATTCAAGAACAAAAGCTTGA+AGG | 0.459020 | 4.1:+13070898 | None:intergenic |
CTCCAGAAATGGTAAACATA+AGG | 0.466289 | 4.1:+13070859 | None:intergenic |
ATCGGTGGCAACTCCAGAAA+TGG | 0.467754 | 4.1:+13070848 | None:intergenic |
CCTGGGATTGCAATTGTTTG+GGG | 0.472067 | 4.1:-13072757 | MS.gene27852:CDS |
TATATATCAGCTCAGCTCTT+GGG | 0.473337 | 4.1:-13071005 | MS.gene27852:CDS |
TTTGAGGAAGGATGCACTCT+GGG | 0.475411 | 4.1:+13070336 | None:intergenic |
TGTTTGGGGACTAACTTTGT+TGG | 0.484275 | 4.1:-13072743 | MS.gene27852:CDS |
AGTTGGCCGGAATTGCAATT+GGG | 0.485520 | 4.1:-13070717 | MS.gene27852:CDS |
GTAGACCCATGCTCCGGCGA+TGG | 0.495881 | 4.1:+13070399 | None:intergenic |
TTGTATCTAAAACAACCTCA+TGG | 0.499097 | 4.1:+13073053 | None:intergenic |
GCATCCTTCCTCAAAGAAGC+TGG | 0.504133 | 4.1:-13070328 | MS.gene27852:CDS |
CCCCAAACAATTGCAATCCC+AGG | 0.504953 | 4.1:+13072757 | None:intergenic |
TACTCATTGTGTACAAAAGC+TGG | 0.505829 | 4.1:+13070463 | None:intergenic |
ACAATGAGTACAGAGGAATA+TGG | 0.514676 | 4.1:-13070450 | MS.gene27852:CDS |
TTGTAGATTGGTGAGTTGGC+CGG | 0.514724 | 4.1:-13070730 | MS.gene27852:intron |
TCACAAACATGTGAAGGCTC+TGG | 0.518719 | 4.1:-13073019 | MS.gene27852:CDS |
ATGAACCCGGTTAGAACTCT+AGG | 0.519479 | 4.1:-13070487 | MS.gene27852:CDS |
TTTCAGGAACACTTCCATCT+GGG | 0.526344 | 4.1:-13070926 | MS.gene27852:CDS |
TGTATCTAAAACAACCTCAT+GGG | 0.536127 | 4.1:+13073054 | None:intergenic |
AGCTGAGCTGATATATAAGC+TGG | 0.541389 | 4.1:+13071011 | None:intergenic |
CTCAAAGAAGCTGGACGTGG+TGG | 0.543311 | 4.1:-13070319 | MS.gene27852:CDS |
ACGTCCAGCTTCTTTGAGGA+AGG | 0.549185 | 4.1:+13070324 | None:intergenic |
GCAAAAGCAATAGTAACAGC+AGG | 0.549342 | 4.1:+13072676 | None:intergenic |
TTCCTCAAAGAAGCTGGACG+TGG | 0.550380 | 4.1:-13070322 | MS.gene27852:CDS |
TTGGTATTGATTTACTCACT+TGG | 0.550812 | 4.1:-13072724 | MS.gene27852:CDS |
TGAGTTTACCGCTCTAGTAT+CGG | 0.558198 | 4.1:+13070830 | None:intergenic |
CTCTGGGTGATCTCACGCAA+TGG | 0.559604 | 4.1:+13070352 | None:intergenic |
CTGGTCCTAGAGTTCTAACC+GGG | 0.561868 | 4.1:+13070482 | None:intergenic |
GGTAAACATAAGGTAAAATG+TGG | 0.569076 | 4.1:+13070869 | None:intergenic |
ATGGAAGTGTTCCTGAAAAG+TGG | 0.569487 | 4.1:+13070931 | None:intergenic |
TGCTTAATGTGATGATTGCA+GGG | 0.570893 | 4.1:-13070684 | MS.gene27852:intron |
ACAACGTGGTAACACTTCCT+GGG | 0.584721 | 4.1:-13072774 | MS.gene27852:CDS |
ACAGTTAATAGCAGAAATGG+TGG | 0.598028 | 4.1:-13072854 | MS.gene27852:intron |
TCAAAGAAGCTGGACGTGGT+GGG | 0.603447 | 4.1:-13070318 | MS.gene27852:CDS |
AGTGTTGTAGACCCATGCTC+CGG | 0.603956 | 4.1:+13070393 | None:intergenic |
GCTTGAAGGTTAGACCCAGA+TGG | 0.605252 | 4.1:+13070912 | None:intergenic |
TTGGGAGCAACACTTGCTAG+TGG | 0.608245 | 4.1:-13070987 | MS.gene27852:CDS |
ACTCTTAAACTAATATTCAG+TGG | 0.615140 | 4.1:-13070963 | MS.gene27852:CDS |
GATTCCTCACAAACATGTGA+AGG | 0.617028 | 4.1:-13073025 | MS.gene27852:CDS |
GTAGTGTTGACCTGTAACAA+TGG | 0.623661 | 4.1:+13072637 | None:intergenic |
TGCTTCAATAGTAGTGAACA+AGG | 0.624250 | 4.1:-13072803 | MS.gene27852:CDS |
AACAGGAGCATCAATGAACC+CGG | 0.626218 | 4.1:-13070500 | MS.gene27852:CDS |
AGAGCCTTCACATGTTTGTG+AGG | 0.626868 | 4.1:+13073021 | None:intergenic |
CAGTTAATAGCAGAAATGGT+GGG | 0.636357 | 4.1:-13072853 | MS.gene27852:CDS |
GTTTACCGCTCTAGTATCGG+TGG | 0.679010 | 4.1:+13070833 | None:intergenic |
AGCAAGAATTGAAACCCATG+AGG | 0.683901 | 4.1:-13073068 | MS.gene27852:CDS |
TTTGTACACAATGAGTACAG+AGG | 0.696529 | 4.1:-13070457 | MS.gene27852:CDS |
TAACAATGGAAACCTCCTTG+TGG | 0.700560 | 4.1:+13072651 | None:intergenic |
AGTTGCCACCGATACTAGAG+CGG | 0.735236 | 4.1:-13070838 | MS.gene27852:intron |
GAACAAGGACAACGACAACG+TGG | 0.744853 | 4.1:-13072788 | MS.gene27852:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | TTAAAAAATATATATAAAAT+TGG | - | chr4.1:13072029-13072048 | MS.gene27852:intron | 0.0% |
!! | ATATACAAAAATAAACTTTA+TGG | + | chr4.1:13070793-13070812 | None:intergenic | 10.0% |
!! | CAAAAATTAAATTAAAAATG+AGG | - | chr4.1:13071466-13071485 | MS.gene27852:intron | 10.0% |
!! | TATAGTATATTGAATTAATT+AGG | - | chr4.1:13070492-13070511 | MS.gene27852:CDS | 10.0% |
!!! | AAAAAATTCTGAATTTTTTT+TGG | + | chr4.1:13071299-13071318 | None:intergenic | 10.0% |
!!! | AAAAAGATTATTTTTTTTAC+AGG | + | chr4.1:13071064-13071083 | None:intergenic | 10.0% |
!!! | TATAATATTTTGAATTTTTC+TGG | + | chr4.1:13071267-13071286 | None:intergenic | 10.0% |
!!! | TTAATTTTGCATTTTTTTTA+TGG | + | chr4.1:13072782-13072801 | None:intergenic | 10.0% |
!!! | TTTTTTTACCAAAAAAAAAA+GGG | - | chr4.1:13071080-13071099 | MS.gene27852:intron | 10.0% |
!!! | TTTTTTTGACAAAAAAATTA+TGG | - | chr4.1:13072087-13072106 | MS.gene27852:intron | 10.0% |
!!! | TTTTTTTTACCAAAAAAAAA+AGG | - | chr4.1:13071079-13071098 | MS.gene27852:intron | 10.0% |
!! | AAAAATACATGATAAATCAA+TGG | - | chr4.1:13071665-13071684 | MS.gene27852:intron | 15.0% |
!! | TTTACAAATTGAGTTAAAAA+GGG | + | chr4.1:13071025-13071044 | None:intergenic | 15.0% |
!!! | ATATTTAACCCTTTTTTTTT+TGG | + | chr4.1:13071091-13071110 | None:intergenic | 15.0% |
!!! | ATGAATTTTTATATGTTTTG+AGG | - | chr4.1:13071338-13071357 | MS.gene27852:intron | 15.0% |
!!! | TGAAGATTGAAAATTTTATA+GGG | + | chr4.1:13071183-13071202 | None:intergenic | 15.0% |
!!! | TGATATTTTCATTTAAAATC+AGG | + | chr4.1:13071954-13071973 | None:intergenic | 15.0% |
!!! | TTGATTTAAAATTAATGTCA+AGG | + | chr4.1:13071986-13072005 | None:intergenic | 15.0% |
!!! | TTGTTATACTTTTAATGTTT+AGG | + | chr4.1:13071901-13071920 | None:intergenic | 15.0% |
!!! | TTTTACAAATTGAGTTAAAA+AGG | + | chr4.1:13071026-13071045 | None:intergenic | 15.0% |
!! | AATTAAGTAACATGATTTCT+TGG | + | chr4.1:13072288-13072307 | None:intergenic | 20.0% |
!! | ACAATATATAGAATAACAAG+TGG | - | chr4.1:13071788-13071807 | MS.gene27852:intron | 20.0% |
!! | ATCCTTTGTATAATTCTTAT+AGG | - | chr4.1:13072352-13072371 | MS.gene27852:intron | 20.0% |
!! | CCAAAATTCTTCAATTTATT+AGG | - | chr4.1:13072206-13072225 | MS.gene27852:intron | 20.0% |
!! | GAAAAGTTGACATATTTATA+GGG | - | chr4.1:13071557-13071576 | MS.gene27852:intron | 20.0% |
!! | GAAAAGTTGACATATTTATA+GGG | + | chr4.1:13071576-13071557 | None:intergenic | 20.0% |
!! | TACCTATAAGAATTATACAA+AGG | + | chr4.1:13072357-13072376 | None:intergenic | 20.0% |
!! | TTACAAATTGAGTTAAAAAG+GGG | + | chr4.1:13071024-13071043 | None:intergenic | 20.0% |
!!! | AAAAGGGTTAAATATGTTTT+TGG | - | chr4.1:13071096-13071115 | MS.gene27852:intron | 20.0% |
!!! | AAATTTTCAATCACTACTTT+TGG | + | chr4.1:13071493-13071512 | None:intergenic | 20.0% |
!!! | AAATTTTCAATCTTCACTTT+TGG | - | chr4.1:13071187-13071206 | MS.gene27852:intron | 20.0% |
!!! | AAGTTGAAGAAAAATTTTAG+AGG | - | chr4.1:13071525-13071544 | MS.gene27852:intron | 20.0% |
!!! | AGACTTAAGAGTTTTTTTTT+TGG | + | chr4.1:13071601-13071620 | None:intergenic | 20.0% |
!!! | AGTTGAAGAAAAATTTTAGA+GGG | - | chr4.1:13071526-13071545 | MS.gene27852:intron | 20.0% |
!!! | ATATGAGTTTACTTTAAAAG+AGG | + | chr4.1:13071215-13071234 | None:intergenic | 20.0% |
!!! | ATATTCTATGTTTTGTAGAT+TGG | - | chr4.1:13072646-13072665 | MS.gene27852:intron | 20.0% |
!!! | ATCATTTTCAAAATGTCAAA+AGG | - | chr4.1:13071724-13071743 | MS.gene27852:intron | 20.0% |
!!! | ATTCAACGAGTATTTTTATT+TGG | + | chr4.1:13072246-13072265 | None:intergenic | 20.0% |
!!! | CCTAATAAATTGAAGAATTT+TGG | + | chr4.1:13072209-13072228 | None:intergenic | 20.0% |
!!! | GACTTAAGAGTTTTTTTTTT+GGG | + | chr4.1:13071600-13071619 | None:intergenic | 20.0% |
!!! | GTATTTTTACAATGATAAGT+TGG | + | chr4.1:13071653-13071672 | None:intergenic | 20.0% |
!!! | GTGAAGATTGAAAATTTTAT+AGG | + | chr4.1:13071184-13071203 | None:intergenic | 20.0% |
!!! | TAGTAATTTTGCATTTAACT+AGG | + | chr4.1:13072752-13072771 | None:intergenic | 20.0% |
!!! | TAGTGATTGAAAATTTTACA+GGG | - | chr4.1:13071497-13071516 | MS.gene27852:intron | 20.0% |
!!! | TATGAGTTTACTTTAAAAGA+GGG | + | chr4.1:13071214-13071233 | None:intergenic | 20.0% |
!!! | TTAATTAGGTTTTGTTTTGT+TGG | - | chr4.1:13070506-13070525 | MS.gene27852:CDS | 20.0% |
!!! | TTCAACGAGTATTTTTATTT+GGG | + | chr4.1:13072245-13072264 | None:intergenic | 20.0% |
!!! | TTTTGGGTTAAATATGTTTT+TGG | + | chr4.1:13071584-13071603 | None:intergenic | 20.0% |
!!! | TTTTTATTTGGGAGTTTTTA+TGG | + | chr4.1:13072234-13072253 | None:intergenic | 20.0% |
! | AAAGAGTCTTAATTTCTTGT+GGG | + | chr4.1:13070969-13070988 | None:intergenic | 25.0% |
! | AATACAGTTAATAGCAGAAA+TGG | - | chr4.1:13070531-13070550 | MS.gene27852:intron | 25.0% |
! | ACATATTTCTTGATATTTGC+AGG | - | chr4.1:13070559-13070578 | MS.gene27852:intron | 25.0% |
! | ACTCTTAAACTAATATTCAG+TGG | - | chr4.1:13072425-13072444 | MS.gene27852:intron | 25.0% |
! | ATTTAACTAGGTTCTTGATA+GGG | + | chr4.1:13072740-13072759 | None:intergenic | 25.0% |
! | CGAAAAGTTGACATATTTAT+AGG | - | chr4.1:13071556-13071575 | MS.gene27852:intron | 25.0% |
! | CGAAAAGTTGACATATTTAT+AGG | + | chr4.1:13071575-13071556 | None:intergenic | 25.0% |
! | TAAAGAGTCTTAATTTCTTG+TGG | + | chr4.1:13070970-13070989 | None:intergenic | 25.0% |
! | TACAAATTGAGTTAAAAAGG+GGG | + | chr4.1:13071023-13071042 | None:intergenic | 25.0% |
! | TTAGAATGATTCATTACTCT+CGG | - | chr4.1:13071811-13071830 | MS.gene27852:intron | 25.0% |
! | TTAGGTAACCCTTAAAATTT+GGG | + | chr4.1:13071883-13071902 | None:intergenic | 25.0% |
! | TTCATAATTGCATAACATTG+TGG | + | chr4.1:13072330-13072349 | None:intergenic | 25.0% |
! | TTTAGGTAACCCTTAAAATT+TGG | + | chr4.1:13071884-13071903 | None:intergenic | 25.0% |
!! | AAGTTGAAGGAAAATTTTAG+AGG | + | chr4.1:13071155-13071174 | None:intergenic | 25.0% |
!! | AGTTGAAGGAAAATTTTAGA+GGG | + | chr4.1:13071154-13071173 | None:intergenic | 25.0% |
!! | GTAGTGATTGAAAATTTTAC+AGG | - | chr4.1:13071496-13071515 | MS.gene27852:intron | 25.0% |
!! | TAATCCAACCCAAATTTTAA+GGG | - | chr4.1:13071872-13071891 | MS.gene27852:intron | 25.0% |
!! | TCTCATTGGTAATAAAATGA+TGG | - | chr4.1:13072058-13072077 | MS.gene27852:intron | 25.0% |
!! | TTAATCCAACCCAAATTTTA+AGG | - | chr4.1:13071871-13071890 | MS.gene27852:intron | 25.0% |
!! | TTTTCAATTTCAAGAGAAGT+GGG | + | chr4.1:13070996-13071015 | None:intergenic | 25.0% |
!!! | TTCTTGATTAGCTACTTTTT+GGG | - | chr4.1:13070927-13070946 | MS.gene27852:CDS | 25.0% |
AAAATTGGCATAACTCTCAT+TGG | - | chr4.1:13072044-13072063 | MS.gene27852:intron | 30.0% | |
ACAAATTGAGTTAAAAAGGG+GGG | + | chr4.1:13071022-13071041 | None:intergenic | 30.0% | |
ATTCAAGAACAAAAGCTTGA+AGG | + | chr4.1:13072493-13072512 | None:intergenic | 30.0% | |
CATTTAACTAGGTTCTTGAT+AGG | + | chr4.1:13072741-13072760 | None:intergenic | 30.0% | |
CTATGTGTATGAGTTTGTAA+AGG | + | chr4.1:13070442-13070461 | None:intergenic | 30.0% | |
GAGTTTGTAAAGGAAAGATT+AGG | + | chr4.1:13070432-13070451 | None:intergenic | 30.0% | |
GGTAAACATAAGGTAAAATG+TGG | + | chr4.1:13072522-13072541 | None:intergenic | 30.0% | |
TACCTTATGTTTACCATTTC+TGG | - | chr4.1:13072527-13072546 | MS.gene27852:intron | 30.0% | |
TTATAGGGACTAAAAGTTGA+AGG | + | chr4.1:13071168-13071187 | None:intergenic | 30.0% | |
! | GTTTTCAATTTCAAGAGAAG+TGG | + | chr4.1:13070997-13071016 | None:intergenic | 30.0% |
! | TGTATCTAAAACAACCTCAT+GGG | + | chr4.1:13070337-13070356 | None:intergenic | 30.0% |
! | TTGTATCTAAAACAACCTCA+TGG | + | chr4.1:13070338-13070357 | None:intergenic | 30.0% |
!! | TTGGTATTGATTTACTCACT+TGG | - | chr4.1:13070664-13070683 | MS.gene27852:intron | 30.0% |
!! | TTTTGGGTATAATTATCTGC+AGG | - | chr4.1:13070943-13070962 | MS.gene27852:CDS | 30.0% |
!!! | CACTTTTTTATTTGACAGAC+CGG | - | chr4.1:13072864-13072883 | MS.gene27852:intron | 30.0% |
!!! | CTTCTTGATTAGCTACTTTT+TGG | - | chr4.1:13070926-13070945 | MS.gene27852:CDS | 30.0% |
!!! | GGTTGTTTTAGATACAAACA+AGG | - | chr4.1:13070341-13070360 | MS.gene27852:CDS | 30.0% |
ACAATGAGTACAGAGGAATA+TGG | - | chr4.1:13072938-13072957 | MS.gene27852:intron | 35.0% | |
ACAGTTAATAGCAGAAATGG+TGG | - | chr4.1:13070534-13070553 | MS.gene27852:intron | 35.0% | |
CAGTTAATAGCAGAAATGGT+GGG | - | chr4.1:13070535-13070554 | MS.gene27852:intron | 35.0% | |
CTCCAGAAATGGTAAACATA+AGG | + | chr4.1:13072532-13072551 | None:intergenic | 35.0% | |
GGAGATATCACTTTACAACT+CGG | - | chr4.1:13071832-13071851 | MS.gene27852:intron | 35.0% | |
GTAACCCTTAAAATTTGGGT+TGG | + | chr4.1:13071879-13071898 | None:intergenic | 35.0% | |
GTGATGTTTCTTAAAGCACA+TGG | - | chr4.1:13072123-13072142 | MS.gene27852:intron | 35.0% | |
TACTCATTGTGTACAAAAGC+TGG | + | chr4.1:13072928-13072947 | None:intergenic | 35.0% | |
TATATATCAGCTCAGCTCTT+GGG | - | chr4.1:13072383-13072402 | MS.gene27852:intron | 35.0% | |
TGCTTAATGTGATGATTGCA+GGG | - | chr4.1:13072704-13072723 | MS.gene27852:CDS | 35.0% | |
TGCTTCAATAGTAGTGAACA+AGG | - | chr4.1:13070585-13070604 | MS.gene27852:intron | 35.0% | |
TTATATATCAGCTCAGCTCT+TGG | - | chr4.1:13072382-13072401 | MS.gene27852:intron | 35.0% | |
TTGCTTAATGTGATGATTGC+AGG | - | chr4.1:13072703-13072722 | MS.gene27852:CDS | 35.0% | |
TTTGTACACAATGAGTACAG+AGG | - | chr4.1:13072931-13072950 | MS.gene27852:intron | 35.0% | |
! | AATGATAAGTTGGCGTGAAA+AGG | + | chr4.1:13071643-13071662 | None:intergenic | 35.0% |
! | TGTTTTGTAGATTGGTGAGT+TGG | - | chr4.1:13072654-13072673 | MS.gene27852:CDS | 35.0% |
!!! | ATATTTGTTGTCGCCGATTT+TGG | - | chr4.1:13072963-13072982 | MS.gene27852:intron | 35.0% |
!!! | TATTTGTTGTCGCCGATTTT+GGG | - | chr4.1:13072964-13072983 | MS.gene27852:intron | 35.0% |
AAGGAGGTTTCCATTGTTAC+AGG | - | chr4.1:13070741-13070760 | MS.gene27852:intron | 40.0% | |
AGCAAGAATTGAAACCCATG+AGG | - | chr4.1:13070320-13070339 | MS.gene27852:CDS | 40.0% | |
AGCTGAGCTGATATATAAGC+TGG | + | chr4.1:13072380-13072399 | None:intergenic | 40.0% | |
CAAGAAAGGGACAGAGATAA+AGG | + | chr4.1:13070397-13070416 | None:intergenic | 40.0% | |
GATTCCTCACAAACATGTGA+AGG | - | chr4.1:13070363-13070382 | MS.gene27852:CDS | 40.0% | |
GCAAAAGCAATAGTAACAGC+AGG | + | chr4.1:13070715-13070734 | None:intergenic | 40.0% | |
TAACAATGGAAACCTCCTTG+TGG | + | chr4.1:13070740-13070759 | None:intergenic | 40.0% | |
TACTCACTTGGTCATATCTC+TGG | - | chr4.1:13070676-13070695 | MS.gene27852:intron | 40.0% | |
TCCTGGGATTGCAATTGTTT+GGG | - | chr4.1:13070630-13070649 | MS.gene27852:intron | 40.0% | |
TGAGTTTACCGCTCTAGTAT+CGG | + | chr4.1:13072561-13072580 | None:intergenic | 40.0% | |
TGTAGACCCAATTGCAATTC+CGG | + | chr4.1:13072680-13072699 | None:intergenic | 40.0% | |
TGTTTGGGGACTAACTTTGT+TGG | - | chr4.1:13070645-13070664 | MS.gene27852:intron | 40.0% | |
TTATTTGACAGACCGGTAAC+AGG | - | chr4.1:13072871-13072890 | MS.gene27852:intron | 40.0% | |
TTCATTGATGCTCCTGTTAC+CGG | + | chr4.1:13072886-13072905 | None:intergenic | 40.0% | |
TTCCTGGGATTGCAATTGTT+TGG | - | chr4.1:13070629-13070648 | MS.gene27852:intron | 40.0% | |
TTTCAGGAACACTTCCATCT+GGG | - | chr4.1:13072462-13072481 | MS.gene27852:intron | 40.0% | |
! | GAGACACCTTTTGCAAGAAA+GGG | + | chr4.1:13070410-13070429 | None:intergenic | 40.0% |
!! | ATGGAAGTGTTCCTGAAAAG+TGG | + | chr4.1:13072460-13072479 | None:intergenic | 40.0% |
!! | CTATTGCTTTTGCTACCACA+AGG | - | chr4.1:13070722-13070741 | MS.gene27852:CDS | 40.0% |
!! | GTAGTGTTGACCTGTAACAA+TGG | + | chr4.1:13070754-13070773 | None:intergenic | 40.0% |
!! | TTTTCAGGAACACTTCCATC+TGG | - | chr4.1:13072461-13072480 | MS.gene27852:intron | 40.0% |
!!! | ATTTGTTGTCGCCGATTTTG+GGG | - | chr4.1:13072965-13072984 | MS.gene27852:intron | 40.0% |
ACAACGTGGTAACACTTCCT+GGG | - | chr4.1:13070614-13070633 | MS.gene27852:intron | 45.0% | |
AGAGCCTTCACATGTTTGTG+AGG | + | chr4.1:13070370-13070389 | None:intergenic | 45.0% | |
AGTTGGCCGGAATTGCAATT+GGG | - | chr4.1:13072671-13072690 | MS.gene27852:CDS | 45.0% | |
ATGAACCCGGTTAGAACTCT+AGG | - | chr4.1:13072901-13072920 | MS.gene27852:intron | 45.0% | |
CATGGGTCTACAACACTGTT+AGG | - | chr4.1:13073001-13073020 | MS.gene27852:CDS | 45.0% | |
CCTGGGATTGCAATTGTTTG+GGG | - | chr4.1:13070631-13070650 | MS.gene27852:intron | 45.0% | |
CTCTGTCCCTTTCTTGCAAA+AGG | - | chr4.1:13070401-13070420 | MS.gene27852:CDS | 45.0% | |
TCACAAACATGTGAAGGCTC+TGG | - | chr4.1:13070369-13070388 | MS.gene27852:CDS | 45.0% | |
TTTGAGGAAGGATGCACTCT+GGG | + | chr4.1:13073055-13073074 | None:intergenic | 45.0% | |
! | GGAGACACCTTTTGCAAGAA+AGG | + | chr4.1:13070411-13070430 | None:intergenic | 45.0% |
! | TTGTAGATTGGTGAGTTGGC+CGG | - | chr4.1:13072658-13072677 | MS.gene27852:CDS | 45.0% |
!! | AACAGGAGCATCAATGAACC+CGG | - | chr4.1:13072888-13072907 | MS.gene27852:intron | 45.0% |
!! | TTGCTTTTGCTACCACAAGG+AGG | - | chr4.1:13070725-13070744 | MS.gene27852:CDS | 45.0% |
!!! | TTTGTTGTCGCCGATTTTGG+GGG | - | chr4.1:13072966-13072985 | MS.gene27852:intron | 45.0% |
!!! | AAAAAATTCTAATTTTTTTT+AGG | - | chr4.1:13071392-13071411 | MS.gene27852:intron | 5.0% |
!!! | AAAATTTTTTTTTTTAATCT+TGG | - | chr4.1:13070903-13070922 | MS.gene27852:CDS | 5.0% |
AGTGTTGTAGACCCATGCTC+CGG | + | chr4.1:13072998-13073017 | None:intergenic | 50.0% | |
AGTTGCCACCGATACTAGAG+CGG | - | chr4.1:13072550-13072569 | MS.gene27852:intron | 50.0% | |
ATCGGTGGCAACTCCAGAAA+TGG | + | chr4.1:13072543-13072562 | None:intergenic | 50.0% | |
CCCCAAACAATTGCAATCCC+AGG | + | chr4.1:13070634-13070653 | None:intergenic | 50.0% | |
GAACAAGGACAACGACAACG+TGG | - | chr4.1:13070600-13070619 | MS.gene27852:intron | 50.0% | |
GACAACGTGGTAACACTTCC+TGG | - | chr4.1:13070613-13070632 | MS.gene27852:intron | 50.0% | |
GAGTTGGCCGGAATTGCAAT+TGG | - | chr4.1:13072670-13072689 | MS.gene27852:CDS | 50.0% | |
GCATCCTTCCTCAAAGAAGC+TGG | - | chr4.1:13073060-13073079 | MS.gene27852:CDS | 50.0% | |
GCTTGAAGGTTAGACCCAGA+TGG | + | chr4.1:13072479-13072498 | None:intergenic | 50.0% | |
TCAAAGAAGCTGGACGTGGT+GGG | - | chr4.1:13073070-13073089 | MS.gene27852:CDS | 50.0% | |
TTCCTCAAAGAAGCTGGACG+TGG | - | chr4.1:13073066-13073085 | MS.gene27852:CDS | 50.0% | |
! | ACGTCCAGCTTCTTTGAGGA+AGG | + | chr4.1:13073067-13073086 | None:intergenic | 50.0% |
! | CTGGTCCTAGAGTTCTAACC+GGG | + | chr4.1:13072909-13072928 | None:intergenic | 50.0% |
! | CTTTGAGGAAGGATGCACTC+TGG | + | chr4.1:13073056-13073075 | None:intergenic | 50.0% |
! | GCTGGTCCTAGAGTTCTAAC+CGG | + | chr4.1:13072910-13072929 | None:intergenic | 50.0% |
! | GTTTACCGCTCTAGTATCGG+TGG | + | chr4.1:13072558-13072577 | None:intergenic | 50.0% |
! | TTGGGAGCAACACTTGCTAG+TGG | - | chr4.1:13072401-13072420 | MS.gene27852:intron | 50.0% |
!! | GGCACACATGACCACTTTTC+AGG | - | chr4.1:13072446-13072465 | MS.gene27852:intron | 50.0% |
CACCACGTCCAGCTTCTTTG+AGG | + | chr4.1:13073071-13073090 | None:intergenic | 55.0% | |
CTCAAAGAAGCTGGACGTGG+TGG | - | chr4.1:13073069-13073088 | MS.gene27852:CDS | 55.0% | |
CTCTGGGTGATCTCACGCAA+TGG | + | chr4.1:13073039-13073058 | None:intergenic | 55.0% | |
CCGGCGATGGCCCCCAAAAT+CGG | + | chr4.1:13072979-13072998 | None:intergenic | 65.0% | |
GTAGACCCATGCTCCGGCGA+TGG | + | chr4.1:13072992-13073011 | None:intergenic | 65.0% | |
!! | CCGATTTTGGGGGCCATCGC+CGG | - | chr4.1:13072976-13072995 | MS.gene27852:intron | 65.0% |
GGGGGCCATCGCCGGAGCAT+GGG | - | chr4.1:13072984-13073003 | MS.gene27852:intron | 75.0% | |
TGGGGGCCATCGCCGGAGCA+TGG | - | chr4.1:13072983-13073002 | MS.gene27852:intron | 75.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr4.1 | gene | 13070303 | 13073107 | 13070303 | ID=MS.gene27852 |
chr4.1 | mRNA | 13070303 | 13073107 | 13070303 | ID=MS.gene27852.t1;Parent=MS.gene27852 |
chr4.1 | exon | 13072988 | 13073107 | 13072988 | ID=MS.gene27852.t1.exon1;Parent=MS.gene27852.t1 |
chr4.1 | CDS | 13072988 | 13073107 | 13072988 | ID=cds.MS.gene27852.t1;Parent=MS.gene27852.t1 |
chr4.1 | exon | 13072648 | 13072872 | 13072648 | ID=MS.gene27852.t1.exon2;Parent=MS.gene27852.t1 |
chr4.1 | CDS | 13072648 | 13072872 | 13072648 | ID=cds.MS.gene27852.t1;Parent=MS.gene27852.t1 |
chr4.1 | exon | 13070839 | 13071036 | 13070839 | ID=MS.gene27852.t1.exon3;Parent=MS.gene27852.t1 |
chr4.1 | CDS | 13070839 | 13071036 | 13070839 | ID=cds.MS.gene27852.t1;Parent=MS.gene27852.t1 |
chr4.1 | exon | 13070685 | 13070746 | 13070685 | ID=MS.gene27852.t1.exon4;Parent=MS.gene27852.t1 |
chr4.1 | CDS | 13070685 | 13070746 | 13070685 | ID=cds.MS.gene27852.t1;Parent=MS.gene27852.t1 |
chr4.1 | exon | 13070303 | 13070528 | 13070303 | ID=MS.gene27852.t1.exon5;Parent=MS.gene27852.t1 |
chr4.1 | CDS | 13070303 | 13070528 | 13070303 | ID=cds.MS.gene27852.t1;Parent=MS.gene27852.t1 |
Gene Sequence |
Protein sequence |