AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene002640

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene002640.t1 MTR_2g017590 95.203 271 12 1 1 271 1 270 0.0 519
MS.gene002640.t1 MTR_2g017620 90.370 270 24 1 1 268 1 270 7.60e-179 493
MS.gene002640.t1 MTR_2g017620 91.406 256 22 0 13 268 1 256 7.01e-173 477
MS.gene002640.t1 MTR_2g017570 79.401 267 55 0 5 271 7 273 6.28e-161 447
MS.gene002640.t1 MTR_2g017610 79.401 267 55 0 5 271 7 273 1.28e-160 447
MS.gene002640.t1 MTR_8g087720 75.096 261 65 0 5 265 7 267 1.10e-146 411
MS.gene002640.t1 MTR_2g017660 65.942 276 85 2 1 267 1 276 1.30e-133 379
MS.gene002640.t1 MTR_8g087710 67.557 262 85 0 10 271 13 274 6.57e-133 377
MS.gene002640.t1 MTR_2g017620 92.063 189 15 0 80 268 1 189 4.93e-125 353
MS.gene002640.t1 MTR_8g087720 74.872 195 49 0 5 199 7 201 4.17e-104 301
MS.gene002640.t1 MTR_4g084880 58.120 234 96 1 32 263 31 264 4.17e-100 293
MS.gene002640.t1 MTR_8g087720 72.472 178 49 0 5 182 7 184 9.06e-91 267
MS.gene002640.t1 MTR_5g079570 52.610 249 109 3 6 251 12 254 8.60e-89 265
MS.gene002640.t1 MTR_3g008920 53.138 239 109 2 16 254 8 243 5.32e-85 255
MS.gene002640.t1 MTR_4g006730 48.594 249 121 2 15 260 54 298 1.03e-71 223
MS.gene002640.t1 MTR_2g104940 48.810 252 120 3 14 260 56 303 1.40e-71 222
MS.gene002640.t1 MTR_7g010650 48.018 227 116 2 36 262 37 261 1.90e-70 218
MS.gene002640.t1 MTR_5g063930 45.489 266 130 6 1 258 1 259 1.79e-68 213
MS.gene002640.t1 MTR_1g097840 46.693 257 122 5 13 257 47 300 3.43e-66 208
MS.gene002640.t1 MTR_4g006630 50.233 215 100 2 49 260 1 211 1.45e-64 201
MS.gene002640.t1 MTR_4g006730 50.233 215 100 2 49 260 1 211 1.82e-64 201
MS.gene002640.t1 MTR_1g070385 44.131 213 118 1 38 250 64 275 2.52e-50 177
MS.gene002640.t1 MTR_4g006730 43.578 218 104 3 15 229 54 255 1.88e-46 156
MS.gene002640.t1 MTR_1g097840 51.462 171 76 2 32 199 70 236 1.05e-42 147
MS.gene002640.t1 MTR_7g010650 43.750 144 80 1 36 179 37 179 1.02e-36 129
MS.gene002640.t1 MTR_1g006490 38.863 211 119 7 35 238 18 225 2.52e-28 108
MS.gene002640.t1 MTR_8g013680 32.773 238 149 6 28 254 9 246 3.32e-28 108
MS.gene002640.t1 MTR_6g069040 31.325 249 148 6 19 251 2 243 2.68e-27 106
MS.gene002640.t1 MTR_1g077540 32.099 243 154 6 19 251 2 243 5.39e-27 105
MS.gene002640.t1 MTR_2g101370 33.871 248 146 8 19 254 6 247 6.35e-27 105
MS.gene002640.t1 MTR_4g006650 44.138 145 65 3 37 178 5 136 1.04e-24 100
MS.gene002640.t1 MTR_5g012810 35.377 212 128 5 35 238 18 228 7.00e-24 97.1
MS.gene002640.t1 MTR_1g006590 33.476 233 146 6 35 261 18 247 1.97e-23 95.9
MS.gene002640.t1 MTR_7g103030 34.123 211 131 4 31 234 16 225 9.65e-23 94.4
MS.gene002640.t1 MTR_4g063090 34.081 223 138 5 41 255 26 247 1.06e-22 94.4
MS.gene002640.t1 MTR_1g115405 32.911 237 145 6 35 261 20 252 9.20e-21 89.0
MS.gene002640.t1 MTR_5g082070 32.407 216 124 6 39 235 58 270 3.87e-18 82.4
MS.gene002640.t1 MTR_7g023350 31.760 233 148 4 35 258 20 250 5.74e-18 81.3
MS.gene002640.t1 MTR_5g010150 32.407 216 124 6 39 235 55 267 6.35e-18 81.6
MS.gene002640.t1 MTR_2g094270 32.804 189 114 4 59 235 74 261 8.23e-18 81.6
MS.gene002640.t1 MTR_7g101190 29.615 260 161 7 25 262 28 287 1.06e-17 81.3
MS.gene002640.t1 MTR_3g070210 32.710 214 126 7 39 235 58 270 1.97e-17 80.5
MS.gene002640.t1 MTR_4g415300 31.604 212 130 6 39 235 59 270 3.14e-17 79.7
MS.gene002640.t1 MTR_8g098375 31.944 216 125 6 39 235 55 267 6.14e-17 79.0
MS.gene002640.t1 MTR_3g118010 28.634 227 147 4 34 245 35 261 6.27e-17 79.0
MS.gene002640.t1 MTR_2g060360 30.876 217 138 5 35 242 18 231 8.16e-15 72.8
MS.gene002640.t1 MTR_3g070210 32.161 199 120 6 39 223 58 255 1.23e-14 72.4
MS.gene002640.t1 MTR_2g094270 31.792 173 108 3 59 222 74 245 1.56e-14 72.0
MS.gene002640.t1 MTR_1g095070 30.055 183 110 4 78 245 24 203 1.81e-14 71.2
MS.gene002640.t1 MTR_4g059390 32.044 181 105 5 70 235 82 259 6.01e-13 67.8
MS.gene002640.t1 MTR_1g095070 30.968 155 92 3 78 220 24 175 1.47e-11 62.4
MS.gene002640.t1 MTR_4g075590 25.112 223 139 7 39 236 40 259 4.58e-11 62.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene002640.t1 AT4G18910 69.478 249 69 1 22 263 38 286 7.19e-127 362
MS.gene002640.t1 AT4G19030 64.591 257 84 1 14 263 33 289 7.40e-122 350
MS.gene002640.t1 AT5G37820 59.438 249 98 1 20 268 30 275 3.81e-101 296
MS.gene002640.t1 AT5G37820 59.438 249 98 1 20 268 66 311 1.18e-100 297
MS.gene002640.t1 AT5G37810 58.506 241 97 1 23 263 33 270 1.43e-97 288
MS.gene002640.t1 AT1G31885 51.481 270 116 3 1 257 4 271 3.82e-95 283
MS.gene002640.t1 AT4G18910 70.270 185 48 1 22 199 38 222 6.58e-89 263
MS.gene002640.t1 AT2G34390 50.699 286 113 6 1 263 1 281 5.36e-88 263
MS.gene002640.t1 AT1G31885 56.682 217 87 1 48 257 1 217 2.70e-87 261
MS.gene002640.t1 AT4G19030 67.568 185 53 1 22 199 41 225 3.50e-86 256
MS.gene002640.t1 AT2G34390 55.411 231 95 2 37 260 7 236 6.95e-86 256
MS.gene002640.t1 AT4G19030 62.428 173 58 1 14 179 33 205 2.13e-74 226
MS.gene002640.t1 AT1G80760 49.796 245 118 2 8 250 52 293 2.64e-71 221
MS.gene002640.t1 AT4G10380 47.826 253 115 4 18 257 56 304 1.46e-67 212
MS.gene002640.t1 AT2G34390 52.703 222 77 7 1 199 1 217 1.18e-66 207
MS.gene002640.t1 AT2G34390 57.962 157 58 2 32 181 44 199 2.81e-58 186
MS.gene002640.t1 AT3G06100 42.202 218 124 2 35 251 45 261 1.52e-48 162
MS.gene002640.t1 AT3G06100 42.523 214 121 2 39 251 1 213 3.92e-48 159
MS.gene002640.t1 AT1G31885 48.305 118 53 2 1 112 4 119 4.90e-32 115
MS.gene002640.t1 AT3G16240 36.406 217 129 4 27 234 8 224 3.09e-31 116
MS.gene002640.t1 AT2G29870 55.789 95 42 0 151 245 20 114 3.96e-31 113
MS.gene002640.t1 AT5G47450 36.123 227 135 5 22 238 3 229 1.23e-28 110
MS.gene002640.t1 AT3G06100 39.437 142 84 2 112 252 41 181 1.71e-26 102
MS.gene002640.t1 AT1G17810 31.873 251 154 6 22 258 13 260 3.94e-26 103
MS.gene002640.t1 AT4G17340 33.921 227 140 5 22 238 3 229 1.95e-25 101
MS.gene002640.t1 AT1G73190 31.349 252 138 7 22 251 13 251 1.23e-24 99.8
MS.gene002640.t1 AT3G26520 34.711 242 137 8 31 258 17 251 1.40e-24 99.4
MS.gene002640.t1 AT2G36830 32.900 231 141 5 13 234 1 226 7.88e-23 94.4
MS.gene002640.t1 AT2G25810 36.493 211 124 7 35 238 18 225 4.60e-22 92.4
MS.gene002640.t1 AT4G01470 33.766 231 141 6 13 235 1 227 7.78e-21 89.4
MS.gene002640.t1 AT5G60660 28.854 253 152 7 33 261 36 284 1.28e-19 86.7
MS.gene002640.t1 AT2G16850 29.565 230 141 5 34 245 34 260 5.03e-19 84.7
MS.gene002640.t1 AT4G35100 30.837 227 142 5 34 245 36 262 5.12e-19 84.7
MS.gene002640.t1 AT4G35100 30.837 227 142 5 34 245 36 262 5.12e-19 84.7
MS.gene002640.t1 AT2G39010 32.812 192 117 4 66 245 77 268 1.23e-18 84.0
MS.gene002640.t1 AT1G01620 32.093 215 125 5 39 235 55 266 1.06e-17 81.3
MS.gene002640.t1 AT3G53420 31.937 191 112 4 70 245 82 269 1.35e-17 80.9
MS.gene002640.t1 AT3G53420 31.937 191 112 4 70 245 82 269 1.35e-17 80.9
MS.gene002640.t1 AT3G61430 31.628 215 126 5 39 235 55 266 1.36e-17 80.9
MS.gene002640.t1 AT3G61430 31.628 215 126 5 39 235 55 266 1.36e-17 80.9
MS.gene002640.t1 AT1G01620 33.684 190 108 4 61 235 8 194 1.74e-17 79.3
MS.gene002640.t1 AT4G00430 32.093 215 125 5 39 235 56 267 1.86e-17 80.5
MS.gene002640.t1 AT3G54820 28.755 233 145 5 34 245 36 268 6.30e-17 79.0
MS.gene002640.t1 AT4G23400 31.628 215 126 5 39 235 56 267 7.54e-17 79.0
MS.gene002640.t1 AT3G47440 29.596 223 133 6 35 242 22 235 1.24e-16 77.8
MS.gene002640.t1 AT2G45960 31.628 215 126 5 39 235 55 266 1.25e-16 78.2
MS.gene002640.t1 AT2G37170 28.390 236 142 6 34 245 35 267 1.43e-16 78.2
MS.gene002640.t1 AT2G37170 28.390 236 142 6 34 245 78 310 2.41e-16 77.8
MS.gene002640.t1 AT2G37180 28.390 236 142 6 34 245 35 267 7.84e-16 75.9
MS.gene002640.t1 AT2G45960 31.980 197 116 4 39 220 55 248 2.39e-14 71.6
MS.gene002640.t1 AT2G45960 31.980 197 116 4 39 220 55 248 2.80e-14 71.6

Find 78 sgRNAs with CRISPR-Local

Find 151 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCCTTATGTTCATCATTTC+TGG 0.019796 2.1:-68834930 MS.gene002640:CDS
TCCATATTCCCCTATATTTA+TGG 0.101747 2.1:+68834433 None:intergenic
TCCTGGAATTTCTATTGTTT+GGG 0.178041 2.1:-68835905 MS.gene002640:CDS
TTCCTGGAATTTCTATTGTT+TGG 0.214894 2.1:-68835906 MS.gene002640:CDS
CCTTGCTTCCTGCACCTTTG+AGG 0.279429 2.1:+68834304 None:intergenic
TATATTGTGTCACCTATTCT+AGG 0.306539 2.1:-68834408 MS.gene002640:CDS
ATACTAAATGTGCTGTTTGC+GGG 0.320000 2.1:-68834590 MS.gene002640:CDS
ACATTCTACTTGATATTTGC+TGG 0.321198 2.1:-68835976 MS.gene002640:CDS
GGGACTTGTTGTTATGGTAT+TGG 0.326696 2.1:-68835884 MS.gene002640:CDS
ATGGTATTGGTCTATTCTAT+TGG 0.337130 2.1:-68835871 MS.gene002640:CDS
TATTGTGCACCATAAATATA+GGG 0.341414 2.1:-68834442 MS.gene002640:CDS
CTATTGTGCACCATAAATAT+AGG 0.344473 2.1:-68834443 MS.gene002640:CDS
GTCACCTATTCTAGGAGCTT+TGG 0.344731 2.1:-68834400 MS.gene002640:CDS
GATAAAGTAGTGACACTTCC+TGG 0.350687 2.1:-68835922 MS.gene002640:CDS
ATTGCTTTAGATTGGTGAAT+TGG 0.362837 2.1:-68834639 MS.gene002640:intron
GCTGGCCCTAAGCTTCTTGC+TGG 0.363620 2.1:+68834465 None:intergenic
TGTTTGGGGACTTGTTGTTA+TGG 0.380271 2.1:-68835890 MS.gene002640:CDS
TTCTGATCTTCAAGCATTTG+TGG 0.385820 2.1:-68834973 MS.gene002640:CDS
TCACTACTTTATCATTGTTA+AGG 0.387999 2.1:+68835932 None:intergenic
GGCAAGGAAAATCAATTTGC+AGG 0.388137 2.1:-68835011 MS.gene002640:CDS
ACCATAAATATAGGGGAATA+TGG 0.392674 2.1:-68834434 MS.gene002640:CDS
TGGTGACAGCGGGATTGAAA+TGG 0.397322 2.1:+68835833 None:intergenic
TGGTGATTTACCTGCTTCAA+TGG 0.403736 2.1:+68835784 None:intergenic
TATTCTATTGGCCATATCTC+TGG 0.406952 2.1:-68835859 MS.gene002640:CDS
CTGCTTCAATGGAAACCTTC+CGG 0.415943 2.1:+68835795 None:intergenic
ATGAATCCAGCAAGAAGCTT+AGG 0.418884 2.1:-68834471 MS.gene002640:CDS
TACTTGATATTTGCTGGATG+TGG 0.422703 2.1:-68835970 MS.gene002640:CDS
CTCCAGAAATGATGAACATA+AGG 0.423335 2.1:+68834928 None:intergenic
CTTTAGATTGGTGAATTGGC+TGG 0.424124 2.1:-68834635 MS.gene002640:intron
CCCCAAACAATAGAAATTCC+AGG 0.443536 2.1:+68835904 None:intergenic
TGAAATGGGCACCAGAGATA+TGG 0.444610 2.1:+68835848 None:intergenic
CCAGCCAAAGCTCCTAGAAT+AGG 0.460240 2.1:+68834396 None:intergenic
TAGGAGCTTTGGCTGGTACA+TGG 0.462758 2.1:-68834389 MS.gene002640:CDS
ATTCATTGATGCTCCTGTGA+TGG 0.469127 2.1:+68834488 None:intergenic
TTTGAGGAATGAAGAACTCT+TGG 0.469564 2.1:+68834320 None:intergenic
TTCATTGATGCTCCTGTGAT+GGG 0.472526 2.1:+68834489 None:intergenic
TATACTAAATGTGCTGTTTG+CGG 0.474101 2.1:-68834591 MS.gene002640:CDS
TATTTATGGTGCACAATAGC+TGG 0.476206 2.1:+68834447 None:intergenic
TATATAATTGCTCAGGTCGT+TGG 0.487350 2.1:-68835074 MS.gene002640:CDS
GGTGACAGCGGGATTGAAAT+GGG 0.499640 2.1:+68835834 None:intergenic
CGGAAGGTTTCCATTGAAGC+AGG 0.504912 2.1:-68835794 MS.gene002640:intron
TGAATCCAGCAAGAAGCTTA+GGG 0.506741 2.1:-68834470 MS.gene002640:CDS
TCTTCATTCCTCAAAGGTGC+AGG 0.507670 2.1:-68834312 MS.gene002640:CDS
CTGGCTTGTTTGTGATTCTG+AGG 0.513340 2.1:+68834355 None:intergenic
AATATAGTTGGTAGCAGAAG+TGG 0.514295 2.1:-68836004 MS.gene002640:intron
GAATTGGCTGGACTTGCAGT+TGG 0.518324 2.1:-68834623 MS.gene002640:CDS
ACCTGAGCAATTATATAAGC+TGG 0.518659 2.1:+68835080 None:intergenic
ACCAGCTTATATAATTGCTC+AGG 0.519565 2.1:-68835081 MS.gene002640:CDS
CCTGGAATTTCTATTGTTTG+GGG 0.522115 2.1:-68835904 MS.gene002640:CDS
CCTATTCTAGGAGCTTTGGC+TGG 0.527244 2.1:-68834396 MS.gene002640:CDS
CCTCAAAGGTGCAGGAAGCA+AGG 0.539036 2.1:-68834304 MS.gene002640:CDS
CTCAAAGGTGCAGGAAGCAA+GGG 0.548913 2.1:-68834303 MS.gene002640:CDS
CTCTTGGTGAGCTCACGCAC+TGG 0.549182 2.1:+68834336 None:intergenic
TTTGCAGGAACACTTCCAGC+TGG 0.556257 2.1:-68834996 MS.gene002640:CDS
GTGTGAGCAATGGTGACAGC+GGG 0.558512 2.1:+68835823 None:intergenic
AACATGGGTGATATTAGCAA+TGG 0.558983 2.1:-68836215 MS.gene002640:CDS
ACCATTGCTCACACTACCAC+CGG 0.562160 2.1:-68835814 MS.gene002640:CDS
TGCTGGATGTGGTTCTGTGG+TGG 0.564205 2.1:-68835959 MS.gene002640:CDS
ATAGTTGGTAGCAGAAGTGG+TGG 0.567543 2.1:-68836001 MS.gene002640:intron
GCTTGAAGATCAGAACCAGC+TGG 0.570825 2.1:+68834981 None:intergenic
TACTAAATGTGCTGTTTGCG+GGG 0.577630 2.1:-68834589 MS.gene002640:intron
ATTTGCTGGATGTGGTTCTG+TGG 0.593346 2.1:-68835962 MS.gene002640:CDS
GCTCTCAAACTTATATTCAG+TGG 0.594191 2.1:-68835032 MS.gene002640:CDS
AAGAGTTCTTCATTCCTCAA+AGG 0.603468 2.1:-68834318 MS.gene002640:CDS
CAAACTTATATTCAGTGGCA+AGG 0.606627 2.1:-68835027 MS.gene002640:CDS
TGTGATTCTGAGGAATGTGT+AGG 0.611435 2.1:+68834365 None:intergenic
ATTGTGCACCATAAATATAG+GGG 0.624900 2.1:-68834441 MS.gene002640:CDS
ATATTTGACAGACCCATCAC+AGG 0.629986 2.1:-68834501 MS.gene002640:intron
GTTGGCTCAACACTTGCAAG+TGG 0.642506 2.1:-68835056 MS.gene002640:CDS
GATTACCGCTCTGTTATCAG+TGG 0.656262 2.1:+68834902 None:intergenic
TAGCAATGGAAATCTTGATG+TGG 0.656350 2.1:-68836201 MS.gene002640:CDS
TTGCTCACACTACCACCGGA+AGG 0.656735 2.1:-68835810 MS.gene002640:CDS
TCCGGTGGTAGTGTGAGCAA+TGG 0.668876 2.1:+68835813 None:intergenic
CTTCAATGGAAACCTTCCGG+TGG 0.695539 2.1:+68835798 None:intergenic
TAGTTGGTAGCAGAAGTGGT+GGG 0.737512 2.1:-68836000 MS.gene002640:CDS
AGTGTGAGCAATGGTGACAG+CGG 0.739883 2.1:+68835822 None:intergenic
GTGGTTATGAATGTAAACGA+TGG 0.756470 2.1:-68836182 MS.gene002640:CDS
AGTTGCCACTGATAACAGAG+CGG 0.802162 2.1:-68834907 MS.gene002640:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAAAAATTAATTGTTGTTTA+TGG - chr2.1:68834424-68834443 MS.gene002640:CDS 10.0%
!!! TAAACAACAATTAATTTTTT+TGG + chr2.1:68834424-68834443 None:intergenic 10.0%
!! TTGTCTTAATATGAATTATA+GGG + chr2.1:68834756-68834775 None:intergenic 15.0%
!!! AGAAAAAGTCAATTTTATTT+CGG + chr2.1:68835743-68835762 None:intergenic 15.0%
!!! TATTTTAACCTATCTAATAA+TGG + chr2.1:68835961-68835980 None:intergenic 15.0%
!! AAAAATTCAAAACTCTTTAG+AGG + chr2.1:68834874-68834893 None:intergenic 20.0%
!! AACAACAATAAAATGTTCAT+TGG - chr2.1:68835766-68835785 MS.gene002640:intron 20.0%
!! AGAGATATTGACATAAATTA+TGG + chr2.1:68835250-68835269 None:intergenic 20.0%
!! AGTTAATAATGTTCCTAAAA+AGG + chr2.1:68835379-68835398 None:intergenic 20.0%
!! ATAAACAAAAACTATTAGAC+AGG + chr2.1:68835837-68835856 None:intergenic 20.0%
!! ATATTGACATAAATTATGGA+TGG + chr2.1:68835246-68835265 None:intergenic 20.0%
!! ATCAATTAATATTATGAACC+AGG + chr2.1:68835644-68835663 None:intergenic 20.0%
!! CTTGTCTTAATATGAATTAT+AGG + chr2.1:68834757-68834776 None:intergenic 20.0%
!! TAAACAAAAACTATTAGACA+GGG + chr2.1:68835836-68835855 None:intergenic 20.0%
!! TATTGACATAAATTATGGAT+GGG + chr2.1:68835245-68835264 None:intergenic 20.0%
!! TCTTATATAGTTGAGAAAAT+AGG - chr2.1:68834933-68834952 MS.gene002640:CDS 20.0%
!! TTTAGGAACATTATTAACTT+CGG - chr2.1:68835380-68835399 MS.gene002640:intron 20.0%
!!! ATCTTTTAAAAAAAAATGCC+TGG - chr2.1:68835623-68835642 MS.gene002640:intron 20.0%
!!! CATAATTTATTGCTTTAGAT+TGG - chr2.1:68835858-68835877 MS.gene002640:CDS 20.0%
!!! CTAAAGAGTTTTGAATTTTT+GGG - chr2.1:68834874-68834893 MS.gene002640:intron 20.0%
!!! TAAAGAGTTTTGAATTTTTG+GGG - chr2.1:68834875-68834894 MS.gene002640:intron 20.0%
!!! TCTAAAGAGTTTTGAATTTT+TGG - chr2.1:68834873-68834892 MS.gene002640:intron 20.0%
! AAACCTTACCATTATTAGAT+AGG - chr2.1:68835950-68835969 MS.gene002640:CDS 25.0%
! ATCTCGTTAAGTTATTTGAT+CGG - chr2.1:68834792-68834811 MS.gene002640:intron 25.0%
! CTTTGATTGTTGAATATAGT+TGG - chr2.1:68834489-68834508 MS.gene002640:CDS 25.0%
! GATGTTCTGACTAAAAAAAA+TGG - chr2.1:68834458-68834477 MS.gene002640:CDS 25.0%
! TAACCTATCTAATAATGGTA+AGG + chr2.1:68835956-68835975 None:intergenic 25.0%
! TATGTGAAGAAGAAAATAGT+TGG - chr2.1:68835141-68835160 MS.gene002640:intron 25.0%
! TATTGTGCACCATAAATATA+GGG - chr2.1:68836063-68836082 MS.gene002640:intron 25.0%
! TCACTACTTTATCATTGTTA+AGG + chr2.1:68834576-68834595 None:intergenic 25.0%
!! AACTATTTTCTTCTTCACAT+AGG + chr2.1:68835142-68835161 None:intergenic 25.0%
AAAAAGGTTGTTCTCTTTGT+AGG + chr2.1:68835363-68835382 None:intergenic 30.0%
ACATTCTACTTGATATTTGC+TGG - chr2.1:68834529-68834548 MS.gene002640:intron 30.0%
ACCATAAATATAGGGGAATA+TGG - chr2.1:68836071-68836090 MS.gene002640:intron 30.0%
ATAGTTGGAAGACCATTATT+TGG - chr2.1:68835156-68835175 MS.gene002640:intron 30.0%
ATTGTGCACCATAAATATAG+GGG - chr2.1:68836064-68836083 MS.gene002640:intron 30.0%
CTATTGTGCACCATAAATAT+AGG - chr2.1:68836062-68836081 MS.gene002640:intron 30.0%
TAGTTGGAAGACCATTATTT+GGG - chr2.1:68835157-68835176 MS.gene002640:intron 30.0%
TATATTGTGTCACCTATTCT+AGG - chr2.1:68836097-68836116 MS.gene002640:intron 30.0%
TCCATATTCCCCTATATTTA+TGG + chr2.1:68836075-68836094 None:intergenic 30.0%
TCCTGGAATTTCTATTGTTT+GGG - chr2.1:68834600-68834619 MS.gene002640:CDS 30.0%
TGTTGACAATTATAGACGAT+GGG - chr2.1:68834985-68835004 MS.gene002640:CDS 30.0%
TTCCTGGAATTTCTATTGTT+TGG - chr2.1:68834599-68834618 MS.gene002640:CDS 30.0%
TTCCTTATGTTCATCATTTC+TGG - chr2.1:68835575-68835594 MS.gene002640:intron 30.0%
TTGTTGACAATTATAGACGA+TGG - chr2.1:68834984-68835003 MS.gene002640:CDS 30.0%
! ACAAAGAGAACAACCTTTTT+AGG - chr2.1:68835363-68835382 MS.gene002640:intron 30.0%
! ATTGCTTTAGATTGGTGAAT+TGG - chr2.1:68835866-68835885 MS.gene002640:CDS 30.0%
!! AAGTCAATTTTATTTCGGCA+AGG + chr2.1:68835738-68835757 None:intergenic 30.0%
!! ATGGTATTGGTCTATTCTAT+TGG - chr2.1:68834634-68834653 MS.gene002640:intron 30.0%
!! TATACTAAATGTGCTGTTTG+CGG - chr2.1:68835914-68835933 MS.gene002640:CDS 30.0%
AAATAGGATCCTCAGAGTAA+TGG - chr2.1:68834949-68834968 MS.gene002640:CDS 35.0%
AAGAGTTCTTCATTCCTCAA+AGG - chr2.1:68836187-68836206 MS.gene002640:CDS 35.0%
ACCAGCTTATATAATTGCTC+AGG - chr2.1:68835424-68835443 MS.gene002640:intron 35.0%
ACCTGAGCAATTATATAAGC+TGG + chr2.1:68835428-68835447 None:intergenic 35.0%
AGAGAGATATACACGTATTG+TGG - chr2.1:68835300-68835319 MS.gene002640:intron 35.0%
AGATATACACGTATTGTGGA+CGG - chr2.1:68835304-68835323 MS.gene002640:intron 35.0%
CAAACTTATATTCAGTGGCA+AGG - chr2.1:68835478-68835497 MS.gene002640:intron 35.0%
CAATGTAGTAGCAAAATGGA+AGG - chr2.1:68835085-68835104 MS.gene002640:CDS 35.0%
CATAAATTATGGATGGGAGA+AGG + chr2.1:68835239-68835258 None:intergenic 35.0%
CCTGGAATTTCTATTGTTTG+GGG - chr2.1:68834601-68834620 MS.gene002640:CDS 35.0%
CTCCAGAAATGATGAACATA+AGG + chr2.1:68835580-68835599 None:intergenic 35.0%
GAAGCATATGTTGATCGAAT+TGG - chr2.1:68835189-68835208 MS.gene002640:intron 35.0%
GCTCTCAAACTTATATTCAG+TGG - chr2.1:68835473-68835492 MS.gene002640:intron 35.0%
GTGGTTATGAATGTAAACGA+TGG - chr2.1:68834323-68834342 MS.gene002640:CDS 35.0%
GTTGACAATTATAGACGATG+GGG - chr2.1:68834986-68835005 MS.gene002640:CDS 35.0%
TAGCAATGGAAATCTTGATG+TGG - chr2.1:68834304-68834323 MS.gene002640:CDS 35.0%
TATATAATTGCTCAGGTCGT+TGG - chr2.1:68835431-68835450 MS.gene002640:intron 35.0%
TATTCTATTGGCCATATCTC+TGG - chr2.1:68834646-68834665 MS.gene002640:intron 35.0%
TATTTATGGTGCACAATAGC+TGG + chr2.1:68836061-68836080 None:intergenic 35.0%
TCAACATATGCTTCGAACAT+AGG + chr2.1:68835183-68835202 None:intergenic 35.0%
TCGTTAAGTTATTTGATCGG+AGG - chr2.1:68834795-68834814 MS.gene002640:intron 35.0%
TGCTCAATGTAGTAGCAAAA+TGG - chr2.1:68835081-68835100 MS.gene002640:CDS 35.0%
TTCTGATCTTCAAGCATTTG+TGG - chr2.1:68835532-68835551 MS.gene002640:intron 35.0%
TTTGAGGAATGAAGAACTCT+TGG + chr2.1:68836188-68836207 None:intergenic 35.0%
! AAAGTCACCTTTTGCAAAAG+AGG + chr2.1:68834392-68834411 None:intergenic 35.0%
! TACTTGATATTTGCTGGATG+TGG - chr2.1:68834535-68834554 MS.gene002640:intron 35.0%
! TCATGTTCCTCTTTTGCAAA+AGG - chr2.1:68834382-68834401 MS.gene002640:CDS 35.0%
!! AATATAGTTGGTAGCAGAAG+TGG - chr2.1:68834501-68834520 MS.gene002640:intron 35.0%
!! ATACTAAATGTGCTGTTTGC+GGG - chr2.1:68835915-68835934 MS.gene002640:CDS 35.0%
!! CGGATTTAATTTTGTCTTGC+AGG - chr2.1:68835400-68835419 MS.gene002640:intron 35.0%
!! GAATTATAGGGCATTGTGAT+TGG + chr2.1:68834744-68834763 None:intergenic 35.0%
ATATTTGACAGACCCATCAC+AGG - chr2.1:68836004-68836023 MS.gene002640:intron 40.0%
ATCGGAGGTGATTAGAAGAA+CGG - chr2.1:68834810-68834829 MS.gene002640:intron 40.0%
ATGAATCCAGCAAGAAGCTT+AGG - chr2.1:68836034-68836053 MS.gene002640:intron 40.0%
ATTCATTGATGCTCCTGTGA+TGG + chr2.1:68836020-68836039 None:intergenic 40.0%
CATTGCATCTTGAATGCATG+CGG - chr2.1:68835024-68835043 MS.gene002640:CDS 40.0%
CCCCAAACAATAGAAATTCC+AGG + chr2.1:68834604-68834623 None:intergenic 40.0%
CTTTAGATTGGTGAATTGGC+TGG - chr2.1:68835870-68835889 MS.gene002640:CDS 40.0%
GAGCTTGTAGGTTGTTGAAA+CGG - chr2.1:68834841-68834860 MS.gene002640:intron 40.0%
GATAAAGTAGTGACACTTCC+TGG - chr2.1:68834583-68834602 MS.gene002640:intron 40.0%
GGCAAGGAAAATCAATTTGC+AGG - chr2.1:68835494-68835513 MS.gene002640:intron 40.0%
TCGAACATAGGCCCAAATAA+TGG + chr2.1:68835171-68835190 None:intergenic 40.0%
TGAATCCAGCAAGAAGCTTA+GGG - chr2.1:68836035-68836054 MS.gene002640:intron 40.0%
TGGTGATTTACCTGCTTCAA+TGG + chr2.1:68834724-68834743 None:intergenic 40.0%
TTCATTGATGCTCCTGTGAT+GGG + chr2.1:68836019-68836038 None:intergenic 40.0%
! AATGGAAGGTGTGAAGAGTA+TGG - chr2.1:68835099-68835118 MS.gene002640:intron 40.0%
! ATGGAAGGTGTGAAGAGTAT+GGG - chr2.1:68835100-68835119 MS.gene002640:intron 40.0%
! TGTGATTCTGAGGAATGTGT+AGG + chr2.1:68836143-68836162 None:intergenic 40.0%
!! GGGACTTGTTGTTATGGTAT+TGG - chr2.1:68834621-68834640 MS.gene002640:CDS 40.0%
!! TACTAAATGTGCTGTTTGCG+GGG - chr2.1:68835916-68835935 MS.gene002640:CDS 40.0%
!! TGTTTGGGGACTTGTTGTTA+TGG - chr2.1:68834615-68834634 MS.gene002640:CDS 40.0%
AGGATCCTCAGAGTAATGGT+TGG - chr2.1:68834953-68834972 MS.gene002640:CDS 45.0%
AGTTGCCACTGATAACAGAG+CGG - chr2.1:68835598-68835617 MS.gene002640:intron 45.0%
ATACACGTATTGTGGACGGA+GGG - chr2.1:68835308-68835327 MS.gene002640:intron 45.0%
CTGCTTCAATGGAAACCTTC+CGG + chr2.1:68834713-68834732 None:intergenic 45.0%
CTTGTAGGTTGTTGAAACGG+CGG - chr2.1:68834844-68834863 MS.gene002640:intron 45.0%
GATTACCGCTCTGTTATCAG+TGG + chr2.1:68835606-68835625 None:intergenic 45.0%
GTTAGAAGATTGCACCTTGG+AGG - chr2.1:68834897-68834916 MS.gene002640:intron 45.0%
TATACACGTATTGTGGACGG+AGG - chr2.1:68835307-68835326 MS.gene002640:intron 45.0%
TGAAATGGGCACCAGAGATA+TGG + chr2.1:68834660-68834679 None:intergenic 45.0%
TTGTAGGTTGTTGAAACGGC+GGG - chr2.1:68834845-68834864 MS.gene002640:intron 45.0%
! ATTTGCTGGATGTGGTTCTG+TGG - chr2.1:68834543-68834562 MS.gene002640:intron 45.0%
! GTCACCTATTCTAGGAGCTT+TGG - chr2.1:68836105-68836124 MS.gene002640:intron 45.0%
! TCTTCATTCCTCAAAGGTGC+AGG - chr2.1:68836193-68836212 MS.gene002640:CDS 45.0%
!! AGGAGGCATTACAGACTTAC+GGG - chr2.1:68835047-68835066 MS.gene002640:CDS 45.0%
!! ATAGTTGGTAGCAGAAGTGG+TGG - chr2.1:68834504-68834523 MS.gene002640:intron 45.0%
!! CTGGCTTGTTTGTGATTCTG+AGG + chr2.1:68836153-68836172 None:intergenic 45.0%
!! GAGGAGGCATTACAGACTTA+CGG - chr2.1:68835046-68835065 MS.gene002640:CDS 45.0%
!! TAGTTGGTAGCAGAAGTGGT+GGG - chr2.1:68834505-68834524 MS.gene002640:intron 45.0%
ACCATTGCTCACACTACCAC+CGG - chr2.1:68834691-68834710 MS.gene002640:intron 50.0%
ACGGCACTTGATGAGCTTGT+AGG - chr2.1:68834829-68834848 MS.gene002640:intron 50.0%
AGATTGCACCTTGGAGGACA+TGG - chr2.1:68834903-68834922 MS.gene002640:intron 50.0%
AGTACATCCCATGTCCTCCA+AGG + chr2.1:68834914-68834933 None:intergenic 50.0%
AGTGTGAGCAATGGTGACAG+CGG + chr2.1:68834686-68834705 None:intergenic 50.0%
ATCTTGAATGCATGCGGAGG+AGG - chr2.1:68835030-68835049 MS.gene002640:CDS 50.0%
CCAGCCAAAGCTCCTAGAAT+AGG + chr2.1:68836112-68836131 None:intergenic 50.0%
CGGAAGGTTTCCATTGAAGC+AGG - chr2.1:68834711-68834730 MS.gene002640:intron 50.0%
CTTCAATGGAAACCTTCCGG+TGG + chr2.1:68834710-68834729 None:intergenic 50.0%
GAATTGGCTGGACTTGCAGT+TGG - chr2.1:68835882-68835901 MS.gene002640:CDS 50.0%
GATTGCACCTTGGAGGACAT+GGG - chr2.1:68834904-68834923 MS.gene002640:intron 50.0%
GCTCTCCAACCATTACTCTG+AGG + chr2.1:68834961-68834980 None:intergenic 50.0%
GCTTGAAGATCAGAACCAGC+TGG + chr2.1:68835527-68835546 None:intergenic 50.0%
GGGGTTAGAAGATTGCACCT+TGG - chr2.1:68834894-68834913 MS.gene002640:intron 50.0%
GGTGACAGCGGGATTGAAAT+GGG + chr2.1:68834674-68834693 None:intergenic 50.0%
TGCATCTTGAATGCATGCGG+AGG - chr2.1:68835027-68835046 MS.gene002640:CDS 50.0%
TGGTGACAGCGGGATTGAAA+TGG + chr2.1:68834675-68834694 None:intergenic 50.0%
TGTAGGTTGTTGAAACGGCG+GGG - chr2.1:68834846-68834865 MS.gene002640:intron 50.0%
TTTGCAGGAACACTTCCAGC+TGG - chr2.1:68835509-68835528 MS.gene002640:intron 50.0%
! CCTATTCTAGGAGCTTTGGC+TGG - chr2.1:68836109-68836128 MS.gene002640:intron 50.0%
! CTCAAAGGTGCAGGAAGCAA+GGG - chr2.1:68836202-68836221 MS.gene002640:CDS 50.0%
! GTTGGCTCAACACTTGCAAG+TGG - chr2.1:68835449-68835468 MS.gene002640:intron 50.0%
! TAGGAGCTTTGGCTGGTACA+TGG - chr2.1:68836116-68836135 MS.gene002640:intron 50.0%
CCTTGCTTCCTGCACCTTTG+AGG + chr2.1:68836204-68836223 None:intergenic 55.0%
GTGTGAGCAATGGTGACAGC+GGG + chr2.1:68834685-68834704 None:intergenic 55.0%
TGGGAGAAGGTGAGAGTGAG+TGG + chr2.1:68835226-68835245 None:intergenic 55.0%
TTGCTCACACTACCACCGGA+AGG - chr2.1:68834695-68834714 MS.gene002640:intron 55.0%
! CCTCAAAGGTGCAGGAAGCA+AGG - chr2.1:68836201-68836220 MS.gene002640:CDS 55.0%
! TCCGGTGGTAGTGTGAGCAA+TGG + chr2.1:68834695-68834714 None:intergenic 55.0%
! TGCTGGATGTGGTTCTGTGG+TGG - chr2.1:68834546-68834565 MS.gene002640:intron 55.0%
CTCTTGGTGAGCTCACGCAC+TGG + chr2.1:68836172-68836191 None:intergenic 60.0%
GCTGGCCCTAAGCTTCTTGC+TGG + chr2.1:68836043-68836062 None:intergenic 60.0%


Chromosome Type Strat End Strand Name
chr2.1 gene 68834293 68836234 68834293 ID=MS.gene002640
chr2.1 mRNA 68834293 68836234 68834293 ID=MS.gene002640.t1;Parent=MS.gene002640
chr2.1 exon 68836124 68836234 68836124 ID=MS.gene002640.t1.exon1;Parent=MS.gene002640.t1
chr2.1 CDS 68836124 68836234 68836124 ID=cds.MS.gene002640.t1;Parent=MS.gene002640.t1
chr2.1 exon 68835795 68836019 68835795 ID=MS.gene002640.t1.exon2;Parent=MS.gene002640.t1
chr2.1 CDS 68835795 68836019 68835795 ID=cds.MS.gene002640.t1;Parent=MS.gene002640.t1
chr2.1 exon 68834908 68835105 68834908 ID=MS.gene002640.t1.exon3;Parent=MS.gene002640.t1
chr2.1 CDS 68834908 68835105 68834908 ID=cds.MS.gene002640.t1;Parent=MS.gene002640.t1
chr2.1 exon 68834590 68834651 68834590 ID=MS.gene002640.t1.exon4;Parent=MS.gene002640.t1
chr2.1 CDS 68834590 68834651 68834590 ID=cds.MS.gene002640.t1;Parent=MS.gene002640.t1
chr2.1 exon 68834293 68834512 68834293 ID=MS.gene002640.t1.exon5;Parent=MS.gene002640.t1
chr2.1 CDS 68834293 68834512 68834293 ID=cds.MS.gene002640.t1;Parent=MS.gene002640.t1
Gene Sequence

>MS.gene002640

ATGGGTGATATTAGCAATGGAAATCTTGATGTGGTTATGAATGTAAACGATGGTGCAACAAAAAAATGTGACGACACAAGCATTGATGATCATGTTCCTCTTTTGCAAAAGGTGACTTTGTTTATCTTCCAAAAAAATTAATTGTTGTTTATGGTTAATTAATTAGATGTTCTGACTAAAAAAAATGGATGTTTTGCTTTGATTGTTGAATATAGTTGGTAGCAGAAGTGGTGGGAACATTCTACTTGATATTTGCTGGATGTGGTTCTGTGGTGGTGAACCTTAACAATGATAAAGTAGTGACACTTCCTGGAATTTCTATTGTTTGGGGACTTGTTGTTATGGTATTGGTCTATTCTATTGGCCATATCTCTGGTGCCCATTTCAATCCCGCTGTCACCATTGCTCACACTACCACCGGAAGGTTTCCATTGAAGCAGGTAAATCACCAATCACAATGCCCTATAATTCATATTAAGACAAGCATAATTTTCACAGCATCTCGTTAAGTTATTTGATCGGAGGTGATTAGAAGAACGGCACTTGATGAGCTTGTAGGTTGTTGAAACGGCGGGGTACCTCTAAAGAGTTTTGAATTTTTGGGGTTAGAAGATTGCACCTTGGAGGACATGGGATGTACTCTTATATAGTTGAGAAAATAGGATCCTCAGAGTAATGGTTGGAGAGCTGTTTGTTGACAATTATAGACGATGGGGTCTGTAACAGTCGAACATTGCATCTTGAATGCATGCGGAGGAGGCATTACAGACTTACGGGATCTAAACAATTGCTCAATGTAGTAGCAAAATGGAAGGTGTGAAGAGTATGGGCGAAAGCGAGTTTGAGCCTATGTGAAGAAGAAAATAGTTGGAAGACCATTATTTGGGCCTATGTTCGAAGCATATGTTGATCGAATTGGATCATCTTCTTCCACTCACTCTCACCTTCTCCCATCCATAATTTATGTCAATATCTCTATCTCTCTAGATATTTTCTCTAAATTTTAGAGAGAGATATACACGTATTGTGGACGGAGGGAGAAAGAGAGAGTGAGTGAAATGAGAGATCCTACAAAGAGAACAACCTTTTTAGGAACATTATTAACTTCGGATTTAATTTTGTCTTGCAGGTACCAGCTTATATAATTGCTCAGGTCGTTGGCTCAACACTTGCAAGTGGAGCTCTCAAACTTATATTCAGTGGCAAGGAAAATCAATTTGCAGGAACACTTCCAGCTGGTTCTGATCTTCAAGCATTTGTGGTCGAATTTATTATCACTTTCTTCCTTATGTTCATCATTTCTGGAGTTGCCACTGATAACAGAGCGGTAATCTTTTAAAAAAAAATGCCTGGTTCATAATATTAATTGATAATTATATTTCTATTAAACATTTTAATTAAGATTTAAGATATGATAATAAATTATATGAGATGAAAAATCACCTTGCCGAAATAAAATTGACTTTTTCTTTCAACAACAATAAAATGTTCATTGGCTAAATGTATAAATATATTCTATGTTTACATAAATATTATTTAACCCTGTCTAATAGTTTTTGTTTATTCATAATTTATTGCTTTAGATTGGTGAATTGGCTGGACTTGCAGTTGGATCTACAGTTATACTAAATGTGCTGTTTGCGGGGTATTGATCTCAAAACCTTACCATTATTAGATAGGTTAAAATAAAATCTAACTTGTGAGTGAAAATATATTTGACAGACCCATCACAGGAGCATCAATGAATCCAGCAAGAAGCTTAGGGCCAGCTATTGTGCACCATAAATATAGGGGAATATGGATATATATTGTGTCACCTATTCTAGGAGCTTTGGCTGGTACATGGACCTACACATTCCTCAGAATCACAAACAAGCCAGTGCGTGAGCTCACCAAGAGTTCTTCATTCCTCAAAGGTGCAGGAAGCAAGGGAGCTGAGTGA
Protein sequence

>MS.gene002640.t1

MGDISNGNLDVVMNVNDGATKKCDDTSIDDHVPLLQKLVAEVVGTFYLIFAGCGSVVVNLNNDKVVTLPGISIVWGLVVMVLVYSIGHISGAHFNPAVTIAHTTTGRFPLKQVPAYIIAQVVGSTLASGALKLIFSGKENQFAGTLPAGSDLQAFVVEFIITFFLMFIISGVATDNRAIGELAGLAVGSTVILNVLFAGPITGASMNPARSLGPAIVHHKYRGIWIYIVSPILGALAGTWTYTFLRITNKPVRELTKSSSFLKGAGSKGAE