AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene03093

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene03093.t1 MTR_2g017590 95.572 271 11 1 1 271 1 270 0.0 520
MS.gene03093.t1 MTR_2g017620 90.000 270 25 1 1 268 1 270 1.17e-177 490
MS.gene03093.t1 MTR_2g017620 91.016 256 23 0 13 268 1 256 6.28e-172 475
MS.gene03093.t1 MTR_2g017570 79.401 267 55 0 5 271 7 273 8.26e-161 447
MS.gene03093.t1 MTR_2g017610 79.401 267 55 0 5 271 7 273 1.40e-160 447
MS.gene03093.t1 MTR_8g087720 75.479 261 64 0 5 265 7 267 2.86e-147 413
MS.gene03093.t1 MTR_2g017660 65.580 276 86 2 1 267 1 276 3.37e-133 378
MS.gene03093.t1 MTR_8g087710 67.557 262 85 0 10 271 13 274 1.10e-132 376
MS.gene03093.t1 MTR_2g017620 92.063 189 15 0 80 268 1 189 6.77e-125 353
MS.gene03093.t1 MTR_8g087720 75.385 195 48 0 5 199 7 201 1.84e-104 302
MS.gene03093.t1 MTR_4g084880 58.120 234 96 1 32 263 31 264 1.84e-100 295
MS.gene03093.t1 MTR_8g087720 73.034 178 48 0 5 182 7 184 2.07e-91 269
MS.gene03093.t1 MTR_5g079570 52.610 249 109 3 6 251 12 254 4.32e-88 263
MS.gene03093.t1 MTR_3g008920 53.138 239 109 2 16 254 8 243 2.22e-84 253
MS.gene03093.t1 MTR_4g006730 48.594 249 121 2 15 260 54 298 7.16e-72 223
MS.gene03093.t1 MTR_2g104940 48.810 252 120 3 14 260 56 303 1.11e-71 223
MS.gene03093.t1 MTR_7g010650 47.577 227 117 2 36 262 37 261 2.09e-69 216
MS.gene03093.t1 MTR_5g063930 45.489 266 130 6 1 258 1 259 4.81e-69 214
MS.gene03093.t1 MTR_1g097840 48.718 234 109 3 32 257 70 300 1.23e-65 207
MS.gene03093.t1 MTR_4g006630 50.698 215 99 2 49 260 1 211 3.09e-65 203
MS.gene03093.t1 MTR_4g006730 50.698 215 99 2 49 260 1 211 4.78e-65 202
MS.gene03093.t1 MTR_1g070385 43.662 213 119 1 38 250 64 275 5.74e-50 176
MS.gene03093.t1 MTR_4g006730 43.578 218 104 3 15 229 54 255 1.14e-46 157
MS.gene03093.t1 MTR_1g097840 50.877 171 77 2 32 199 70 236 2.82e-42 145
MS.gene03093.t1 MTR_7g010650 43.056 144 81 1 36 179 37 179 9.46e-36 127
MS.gene03093.t1 MTR_8g013680 32.773 238 149 6 28 254 9 246 2.47e-28 108
MS.gene03093.t1 MTR_1g006490 38.389 211 120 7 35 238 18 225 2.42e-27 106
MS.gene03093.t1 MTR_1g077540 31.687 243 155 6 19 251 2 243 5.50e-27 105
MS.gene03093.t1 MTR_6g069040 31.325 249 148 6 19 251 2 243 6.17e-27 105
MS.gene03093.t1 MTR_2g101370 33.871 248 146 8 19 254 6 247 6.42e-27 105
MS.gene03093.t1 MTR_4g006650 44.138 145 65 3 37 178 5 136 4.91e-25 102
MS.gene03093.t1 MTR_5g012810 35.377 212 128 5 35 238 18 228 1.07e-23 96.7
MS.gene03093.t1 MTR_4g063090 34.529 223 137 5 41 255 26 247 2.17e-23 95.9
MS.gene03093.t1 MTR_7g103030 34.123 211 131 4 31 234 16 225 7.69e-23 94.4
MS.gene03093.t1 MTR_1g006590 33.476 233 146 6 35 261 18 247 1.12e-22 94.0
MS.gene03093.t1 MTR_1g115405 31.197 234 153 4 35 261 20 252 4.77e-20 87.0
MS.gene03093.t1 MTR_2g094270 32.804 189 114 4 59 235 74 261 1.79e-17 80.5
MS.gene03093.t1 MTR_5g082070 31.944 216 125 6 39 235 58 270 2.11e-17 80.5
MS.gene03093.t1 MTR_7g023350 30.303 231 154 3 35 258 20 250 2.76e-17 79.3
MS.gene03093.t1 MTR_5g010150 31.944 216 125 6 39 235 55 267 3.00e-17 80.1
MS.gene03093.t1 MTR_7g101190 29.231 260 162 7 25 262 28 287 4.94e-17 79.3
MS.gene03093.t1 MTR_3g070210 32.243 214 127 7 39 235 58 270 1.03e-16 78.6
MS.gene03093.t1 MTR_4g415300 31.132 212 131 6 39 235 59 270 1.54e-16 77.8
MS.gene03093.t1 MTR_3g118010 28.194 227 148 4 34 245 35 261 2.26e-16 77.4
MS.gene03093.t1 MTR_8g098375 31.481 216 126 6 39 235 55 267 3.21e-16 77.0
MS.gene03093.t1 MTR_2g060360 31.336 217 137 5 35 242 18 231 3.55e-15 73.6
MS.gene03093.t1 MTR_1g095070 30.220 182 109 4 79 245 25 203 2.05e-14 70.9
MS.gene03093.t1 MTR_2g094270 31.792 173 108 3 59 222 74 245 3.13e-14 71.2
MS.gene03093.t1 MTR_3g070210 31.633 196 119 6 39 220 58 252 6.46e-14 70.5
MS.gene03093.t1 MTR_4g059390 32.044 181 105 5 70 235 82 259 1.24e-12 67.0
MS.gene03093.t1 MTR_1g095070 31.169 154 91 3 79 220 25 175 1.85e-11 62.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene03093.t1 AT4G18910 69.478 249 69 1 22 263 38 286 7.51e-127 362
MS.gene03093.t1 AT4G19030 64.591 257 84 1 14 263 33 289 7.48e-122 350
MS.gene03093.t1 AT5G37820 59.438 249 98 1 20 268 30 275 2.60e-100 295
MS.gene03093.t1 AT5G37820 59.438 249 98 1 20 268 66 311 8.90e-100 295
MS.gene03093.t1 AT5G37810 58.506 241 97 1 23 263 33 270 1.27e-96 285
MS.gene03093.t1 AT1G31885 51.481 270 116 3 1 257 4 271 2.39e-95 283
MS.gene03093.t1 AT4G18910 70.270 185 48 1 22 199 38 222 1.03e-88 263
MS.gene03093.t1 AT1G31885 56.221 217 88 1 48 257 1 217 1.74e-86 259
MS.gene03093.t1 AT2G34390 49.650 286 116 6 1 263 1 281 3.25e-86 259
MS.gene03093.t1 AT4G19030 67.568 185 53 1 22 199 41 225 3.82e-86 256
MS.gene03093.t1 AT2G34390 54.113 231 98 2 37 260 7 236 3.72e-84 252
MS.gene03093.t1 AT4G19030 62.428 173 58 1 14 179 33 205 2.51e-74 226
MS.gene03093.t1 AT1G80760 49.796 245 118 2 8 250 52 293 1.82e-71 222
MS.gene03093.t1 AT4G10380 47.826 253 115 4 18 257 56 304 1.14e-67 212
MS.gene03093.t1 AT2G34390 51.351 222 80 7 1 199 1 217 6.03e-65 202
MS.gene03093.t1 AT2G34390 56.051 157 61 2 32 181 44 199 1.67e-56 181
MS.gene03093.t1 AT3G06100 41.743 218 125 2 35 251 45 261 1.32e-48 162
MS.gene03093.t1 AT3G06100 42.056 214 122 2 39 251 1 213 4.51e-48 159
MS.gene03093.t1 AT1G31885 48.305 118 53 2 1 112 4 119 2.63e-32 116
MS.gene03093.t1 AT3G16240 36.406 217 129 4 27 234 8 224 2.90e-31 117
MS.gene03093.t1 AT2G29870 55.789 95 42 0 151 245 20 114 4.36e-31 113
MS.gene03093.t1 AT5G47450 36.564 227 134 5 22 238 3 229 3.68e-29 111
MS.gene03093.t1 AT3G06100 39.437 142 84 2 112 252 41 181 1.45e-26 102
MS.gene03093.t1 AT1G17810 30.153 262 144 6 22 258 13 260 9.52e-26 102
MS.gene03093.t1 AT4G17340 33.921 227 140 5 22 238 3 229 2.33e-25 101
MS.gene03093.t1 AT1G73190 30.556 252 140 7 22 251 13 251 9.90e-24 97.4
MS.gene03093.t1 AT3G26520 32.365 241 144 6 31 258 17 251 2.80e-23 95.9
MS.gene03093.t1 AT2G36830 32.468 231 142 5 13 234 1 226 5.19e-22 92.4
MS.gene03093.t1 AT2G25810 36.019 211 125 7 35 238 18 225 1.03e-21 91.7
MS.gene03093.t1 AT4G01470 33.766 231 141 6 13 235 1 227 8.27e-21 89.0
MS.gene03093.t1 AT5G60660 28.458 253 153 7 33 261 36 284 5.97e-19 84.7
MS.gene03093.t1 AT2G39010 32.812 192 117 4 66 245 77 268 2.27e-18 83.2
MS.gene03093.t1 AT2G16850 29.130 230 142 5 34 245 34 260 2.34e-18 82.8
MS.gene03093.t1 AT4G35100 30.396 227 143 5 34 245 36 262 2.36e-18 82.8
MS.gene03093.t1 AT4G35100 30.396 227 143 5 34 245 36 262 2.36e-18 82.8
MS.gene03093.t1 AT3G47440 30.493 223 131 6 35 242 22 235 1.68e-17 80.1
MS.gene03093.t1 AT3G53420 31.937 191 112 4 70 245 82 269 3.05e-17 80.1
MS.gene03093.t1 AT3G53420 31.937 191 112 4 70 245 82 269 3.05e-17 80.1
MS.gene03093.t1 AT1G01620 33.684 190 108 4 61 235 8 194 4.08e-17 78.2
MS.gene03093.t1 AT1G01620 31.628 215 126 5 39 235 55 266 5.11e-17 79.3
MS.gene03093.t1 AT3G61430 31.163 215 127 5 39 235 55 266 7.31e-17 79.0
MS.gene03093.t1 AT3G61430 31.163 215 127 5 39 235 55 266 7.31e-17 79.0
MS.gene03093.t1 AT4G00430 31.628 215 126 5 39 235 56 267 9.20e-17 78.6
MS.gene03093.t1 AT3G54820 28.326 233 146 5 34 245 36 268 2.09e-16 77.8
MS.gene03093.t1 AT4G23400 31.163 215 127 5 39 235 56 267 3.27e-16 77.0
MS.gene03093.t1 AT2G37170 30.890 191 114 4 70 245 80 267 5.23e-16 76.6
MS.gene03093.t1 AT2G45960 31.163 215 127 5 39 235 55 266 5.24e-16 76.6
MS.gene03093.t1 AT2G37170 27.966 236 143 6 34 245 78 310 1.01e-15 76.3
MS.gene03093.t1 AT2G37180 27.966 236 143 6 34 245 35 267 3.82e-15 73.9
MS.gene03093.t1 AT2G45960 31.472 197 117 4 39 220 55 248 1.12e-13 69.7
MS.gene03093.t1 AT2G45960 31.472 197 117 4 39 220 55 248 1.20e-13 70.1

Find 77 sgRNAs with CRISPR-Local

Find 151 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCCTTATGTTCATCATTTC+TGG 0.019796 2.3:-68879725 MS.gene03093:CDS
TCCATATTCCCCTATATTTA+TGG 0.101747 2.3:+68879228 None:intergenic
TCCTGGAATTTCTATTGTTT+GGG 0.178041 2.3:-68880700 MS.gene03093:CDS
TTCCTGGAATTTCTATTGTT+TGG 0.214894 2.3:-68880701 MS.gene03093:CDS
CCTTGCTTCCTGCACCTTTG+AGG 0.279429 2.3:+68879099 None:intergenic
TATATTGTGTCACCTATTCT+AGG 0.306539 2.3:-68879203 MS.gene03093:CDS
ACATTCTTCTTGATATTTGC+TGG 0.306945 2.3:-68880771 MS.gene03093:CDS
ATACTAAATGTGCTGTTTGC+GGG 0.320000 2.3:-68879385 MS.gene03093:CDS
TGTTTGGGGACTTGCTGTTA+TGG 0.331507 2.3:-68880685 MS.gene03093:CDS
TATTGTGCACCATAAATATA+GGG 0.341414 2.3:-68879237 MS.gene03093:CDS
CTATTGTGCACCATAAATAT+AGG 0.344473 2.3:-68879238 MS.gene03093:CDS
GTCACCTATTCTAGGAGCTT+TGG 0.344731 2.3:-68879195 MS.gene03093:CDS
GATAAAGTAGTGACACTTCC+TGG 0.350687 2.3:-68880717 MS.gene03093:CDS
ATTGCTTTAGATTGGTGAAT+TGG 0.362837 2.3:-68879434 MS.gene03093:intron
GCTGGCCCTAAGCTTCTTGC+TGG 0.363620 2.3:+68879260 None:intergenic
TTCTGATCTTCAAGCATTTG+TGG 0.385820 2.3:-68879768 MS.gene03093:CDS
TCACTACTTTATCATTGTTA+AGG 0.387999 2.3:+68880727 None:intergenic
GGCAAGGAAAATCAATTTGC+AGG 0.388137 2.3:-68879806 MS.gene03093:CDS
ATGGTATTAGTATATTCTAT+TGG 0.391418 2.3:-68880666 MS.gene03093:CDS
ACCATAAATATAGGGGAATA+TGG 0.392674 2.3:-68879229 MS.gene03093:CDS
TGGTGACAGCGGGATTGAAA+TGG 0.397322 2.3:+68880628 None:intergenic
TGGTGATTTACCTGCTTCAA+TGG 0.403736 2.3:+68880579 None:intergenic
CTGCTTCAATGGAAACCTTC+CGG 0.415943 2.3:+68880590 None:intergenic
ATGAATCCAGCAAGAAGCTT+AGG 0.418884 2.3:-68879266 MS.gene03093:CDS
TTCTTGATATTTGCTGGATG+TGG 0.422703 2.3:-68880765 MS.gene03093:CDS
CTCCAGAAATGATGAACATA+AGG 0.423335 2.3:+68879723 None:intergenic
CTTTAGATTGGTGAATTGGC+TGG 0.424124 2.3:-68879430 MS.gene03093:intron
TATTCTATTGGCCATATCTC+TGG 0.439778 2.3:-68880654 MS.gene03093:CDS
CCCCAAACAATAGAAATTCC+AGG 0.443536 2.3:+68880699 None:intergenic
TGAAATGGGCACCAGAGATA+TGG 0.444610 2.3:+68880643 None:intergenic
CCAGCCAAAGCTCCTAGAAT+AGG 0.460240 2.3:+68879191 None:intergenic
TAGGAGCTTTGGCTGGTACA+TGG 0.462758 2.3:-68879184 MS.gene03093:CDS
ATTCATTGATGCTCCTGTGA+TGG 0.469127 2.3:+68879283 None:intergenic
TTTGAGGAATGAAGAACTCT+TGG 0.469564 2.3:+68879115 None:intergenic
TTCATTGATGCTCCTGTGAT+GGG 0.472526 2.3:+68879284 None:intergenic
TATACTAAATGTGCTGTTTG+CGG 0.474101 2.3:-68879386 MS.gene03093:CDS
TATTTATGGTGCACAATAGC+TGG 0.476206 2.3:+68879242 None:intergenic
TATATAATTGCTCAGGTCGT+TGG 0.487350 2.3:-68879869 MS.gene03093:CDS
GGTGACAGCGGGATTGAAAT+GGG 0.499640 2.3:+68880629 None:intergenic
CGGAAGGTTTCCATTGAAGC+AGG 0.504912 2.3:-68880589 MS.gene03093:intron
TGAATCCAGCAAGAAGCTTA+GGG 0.506741 2.3:-68879265 MS.gene03093:CDS
TCTTCATTCCTCAAAGGTGC+AGG 0.507670 2.3:-68879107 MS.gene03093:CDS
GATTGTTGAATATAGTTGGT+AGG 0.511991 2.3:-68880807 MS.gene03093:intron
CTGGCTTGTTTGTGATTCTG+AGG 0.513340 2.3:+68879150 None:intergenic
GAATTGGCTGGACTTGCAGT+TGG 0.518324 2.3:-68879418 MS.gene03093:CDS
ACCTGAGCAATTATATAAGC+TGG 0.518659 2.3:+68879875 None:intergenic
ACCAGCTTATATAATTGCTC+AGG 0.519565 2.3:-68879876 MS.gene03093:CDS
CCTGGAATTTCTATTGTTTG+GGG 0.522115 2.3:-68880699 MS.gene03093:CDS
CCTATTCTAGGAGCTTTGGC+TGG 0.527244 2.3:-68879191 MS.gene03093:CDS
CCTCAAAGGTGCAGGAAGCA+AGG 0.539036 2.3:-68879099 MS.gene03093:CDS
CTCAAAGGTGCAGGAAGCAA+GGG 0.548913 2.3:-68879098 MS.gene03093:CDS
CTCTTGGTGAGCTCACGCAC+TGG 0.549182 2.3:+68879131 None:intergenic
TTTGCAGGAACACTTCCAGC+TGG 0.556257 2.3:-68879791 MS.gene03093:CDS
GTGTGAGCAATGGTGACAGC+GGG 0.558512 2.3:+68880618 None:intergenic
AACATGGGTGATATTAGCAA+TGG 0.558983 2.3:-68881009 MS.gene03093:CDS
ACCATTGCTCACACTACCAC+CGG 0.562160 2.3:-68880609 MS.gene03093:CDS
TGCTGGATGTGGTTCTGTGG+TGG 0.564205 2.3:-68880754 MS.gene03093:CDS
GCTTGAAGATCAGAACCAGC+TGG 0.570825 2.3:+68879776 None:intergenic
TACTAAATGTGCTGTTTGCG+GGG 0.577630 2.3:-68879384 MS.gene03093:intron
ATAGTTGGTAGGAGAAGTTG+TGG 0.585849 2.3:-68880796 MS.gene03093:intron
ATTTGCTGGATGTGGTTCTG+TGG 0.593346 2.3:-68880757 MS.gene03093:CDS
GCTCTCAAACTTATATTCAG+TGG 0.594191 2.3:-68879827 MS.gene03093:CDS
AAGAGTTCTTCATTCCTCAA+AGG 0.603468 2.3:-68879113 MS.gene03093:CDS
CAAACTTATATTCAGTGGCA+AGG 0.606627 2.3:-68879822 MS.gene03093:CDS
TGTGATTCTGAGGAATGTGT+AGG 0.611435 2.3:+68879160 None:intergenic
ATTGTGCACCATAAATATAG+GGG 0.624900 2.3:-68879236 MS.gene03093:CDS
ATATTTGACAGACCCATCAC+AGG 0.629986 2.3:-68879296 MS.gene03093:intron
GATTACCGCTCTATTATCAG+TGG 0.633724 2.3:+68879697 None:intergenic
GTTGGCTCAACACTTGCAAG+TGG 0.642506 2.3:-68879851 MS.gene03093:CDS
TAGCAATGGAAATCTTGATG+TGG 0.656350 2.3:-68880995 MS.gene03093:CDS
TTGCTCACACTACCACCGGA+AGG 0.656735 2.3:-68880605 MS.gene03093:CDS
TCCGGTGGTAGTGTGAGCAA+TGG 0.668876 2.3:+68880608 None:intergenic
TAGTTGGTAGGAGAAGTTGT+GGG 0.670961 2.3:-68880795 MS.gene03093:CDS
CTTCAATGGAAACCTTCCGG+TGG 0.695539 2.3:+68880593 None:intergenic
AGTGTGAGCAATGGTGACAG+CGG 0.739883 2.3:+68880617 None:intergenic
AGTTGCCACTGATAATAGAG+CGG 0.742875 2.3:-68879702 MS.gene03093:intron
GTGGTTATGAATGTAAACGA+TGG 0.756470 2.3:-68880976 MS.gene03093:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAAAAATTAATTGTTGTTTA+TGG - chr2.3:68879218-68879237 MS.gene03093:CDS 10.0%
!!! ATAAACAACAATTAATTTTT+TGG + chr2.3:68879219-68879238 None:intergenic 10.0%
!! TTGTCTTAATATGAATTATA+GGG + chr2.3:68879550-68879569 None:intergenic 15.0%
!! TTTGTCTTAATATGAATTAT+AGG + chr2.3:68879551-68879570 None:intergenic 15.0%
!!! AGAAAAAGTCAATTTTATTT+CGG + chr2.3:68880537-68880556 None:intergenic 15.0%
!!! TATTTTAACCTATCTAATAA+TGG + chr2.3:68880755-68880774 None:intergenic 15.0%
!! AAAAATTCAAAACTCTTTAG+AGG + chr2.3:68879668-68879687 None:intergenic 20.0%
!! AACAACAATAAAATGTTCAT+TGG - chr2.3:68880560-68880579 MS.gene03093:intron 20.0%
!! AGAGATATTGACATAAATTA+TGG + chr2.3:68880044-68880063 None:intergenic 20.0%
!! AGTTAATAATGTTCCTAAAA+AGG + chr2.3:68880173-68880192 None:intergenic 20.0%
!! ATAAACAAAAACTATTAGAC+AGG + chr2.3:68880631-68880650 None:intergenic 20.0%
!! ATATTGACATAAATTATGGA+TGG + chr2.3:68880040-68880059 None:intergenic 20.0%
!! ATCAATTAATATTATGAACC+AGG + chr2.3:68880438-68880457 None:intergenic 20.0%
!! ATGGTATTAGTATATTCTAT+TGG - chr2.3:68879428-68879447 MS.gene03093:intron 20.0%
!! TAAACAAAAACTATTAGACA+GGG + chr2.3:68880630-68880649 None:intergenic 20.0%
!! TATTGACATAAATTATGGAT+GGG + chr2.3:68880039-68880058 None:intergenic 20.0%
!! TCTTATATAGTTGAGAAAAT+AGG - chr2.3:68879727-68879746 MS.gene03093:CDS 20.0%
!! TTTAGGAACATTATTAACTT+CGG - chr2.3:68880174-68880193 MS.gene03093:intron 20.0%
!!! ATCTTTTAAAAAAAAATGCC+TGG - chr2.3:68880417-68880436 MS.gene03093:intron 20.0%
!!! CATAATTTATTGCTTTAGAT+TGG - chr2.3:68880652-68880671 MS.gene03093:CDS 20.0%
!!! CTAAAGAGTTTTGAATTTTT+GGG - chr2.3:68879668-68879687 MS.gene03093:intron 20.0%
!!! TAAAGAGTTTTGAATTTTTG+GGG - chr2.3:68879669-68879688 MS.gene03093:intron 20.0%
!!! TCTAAAGAGTTTTGAATTTT+TGG - chr2.3:68879667-68879686 MS.gene03093:intron 20.0%
! AAACCTTACCATTATTAGAT+AGG - chr2.3:68880744-68880763 MS.gene03093:CDS 25.0%
! ATCTCGTTAAGTTATTTGAT+CGG - chr2.3:68879586-68879605 MS.gene03093:intron 25.0%
! CTTTGATTGTTGAATATAGT+TGG - chr2.3:68879283-68879302 MS.gene03093:CDS 25.0%
! GATGTTCTGACTAAAAAAAA+TGG - chr2.3:68879252-68879271 MS.gene03093:CDS 25.0%
! TAACCTATCTAATAATGGTA+AGG + chr2.3:68880750-68880769 None:intergenic 25.0%
! TATGTGAAGAAGAAAATAGT+TGG - chr2.3:68879935-68879954 MS.gene03093:intron 25.0%
! TATTGTGCACCATAAATATA+GGG - chr2.3:68880857-68880876 MS.gene03093:intron 25.0%
! TCACTACTTTATCATTGTTA+AGG + chr2.3:68879370-68879389 None:intergenic 25.0%
!! AACTATTTTCTTCTTCACAT+AGG + chr2.3:68879936-68879955 None:intergenic 25.0%
AAAAAGGTTGTTCTCTTTGT+AGG + chr2.3:68880157-68880176 None:intergenic 30.0%
ACATTCTTCTTGATATTTGC+TGG - chr2.3:68879323-68879342 MS.gene03093:intron 30.0%
ACCATAAATATAGGGGAATA+TGG - chr2.3:68880865-68880884 MS.gene03093:intron 30.0%
ATAGTTGGAAGACCATTATT+TGG - chr2.3:68879950-68879969 MS.gene03093:intron 30.0%
ATTGTGCACCATAAATATAG+GGG - chr2.3:68880858-68880877 MS.gene03093:intron 30.0%
CTATTGTGCACCATAAATAT+AGG - chr2.3:68880856-68880875 MS.gene03093:intron 30.0%
GATTGTTGAATATAGTTGGT+AGG - chr2.3:68879287-68879306 MS.gene03093:CDS 30.0%
TAGTTGGAAGACCATTATTT+GGG - chr2.3:68879951-68879970 MS.gene03093:intron 30.0%
TATATTGTGTCACCTATTCT+AGG - chr2.3:68880891-68880910 MS.gene03093:intron 30.0%
TCCATATTCCCCTATATTTA+TGG + chr2.3:68880869-68880888 None:intergenic 30.0%
TCCTGGAATTTCTATTGTTT+GGG - chr2.3:68879394-68879413 MS.gene03093:CDS 30.0%
TGTTGACAATTATAGACGAT+GGG - chr2.3:68879779-68879798 MS.gene03093:CDS 30.0%
TTCCTGGAATTTCTATTGTT+TGG - chr2.3:68879393-68879412 MS.gene03093:CDS 30.0%
TTCCTTATGTTCATCATTTC+TGG - chr2.3:68880369-68880388 MS.gene03093:intron 30.0%
TTGTTGACAATTATAGACGA+TGG - chr2.3:68879778-68879797 MS.gene03093:CDS 30.0%
! ACAAAGAGAACAACCTTTTT+AGG - chr2.3:68880157-68880176 MS.gene03093:intron 30.0%
! ATTGCTTTAGATTGGTGAAT+TGG - chr2.3:68880660-68880679 MS.gene03093:CDS 30.0%
!! AAGTCAATTTTATTTCGGCA+AGG + chr2.3:68880532-68880551 None:intergenic 30.0%
!! TATACTAAATGTGCTGTTTG+CGG - chr2.3:68880708-68880727 MS.gene03093:CDS 30.0%
AAATAGGATCCTCAGAGTAA+TGG - chr2.3:68879743-68879762 MS.gene03093:CDS 35.0%
AAGAGTTCTTCATTCCTCAA+AGG - chr2.3:68880981-68881000 MS.gene03093:CDS 35.0%
ACCAGCTTATATAATTGCTC+AGG - chr2.3:68880218-68880237 MS.gene03093:intron 35.0%
ACCTGAGCAATTATATAAGC+TGG + chr2.3:68880222-68880241 None:intergenic 35.0%
AGAGAGATATACACGTATTG+TGG - chr2.3:68880094-68880113 MS.gene03093:intron 35.0%
AGATATACACGTATTGTGGA+AGG - chr2.3:68880098-68880117 MS.gene03093:intron 35.0%
CAAACTTATATTCAGTGGCA+AGG - chr2.3:68880272-68880291 MS.gene03093:intron 35.0%
CAATGTAGTAGCAAAATGGA+AGG - chr2.3:68879879-68879898 MS.gene03093:CDS 35.0%
CATAAATTATGGATGGGAGA+AGG + chr2.3:68880033-68880052 None:intergenic 35.0%
CCTGGAATTTCTATTGTTTG+GGG - chr2.3:68879395-68879414 MS.gene03093:CDS 35.0%
CTCCAGAAATGATGAACATA+AGG + chr2.3:68880374-68880393 None:intergenic 35.0%
GCTCTCAAACTTATATTCAG+TGG - chr2.3:68880267-68880286 MS.gene03093:intron 35.0%
GTGGTTATGAATGTAAACGA+TGG - chr2.3:68879118-68879137 MS.gene03093:CDS 35.0%
GTTGACAATTATAGACGATG+GGG - chr2.3:68879780-68879799 MS.gene03093:CDS 35.0%
TAGCAATGGAAATCTTGATG+TGG - chr2.3:68879099-68879118 MS.gene03093:CDS 35.0%
TATATAATTGCTCAGGTCGT+TGG - chr2.3:68880225-68880244 MS.gene03093:intron 35.0%
TATTCTATTGGCCATATCTC+TGG - chr2.3:68879440-68879459 MS.gene03093:intron 35.0%
TATTTATGGTGCACAATAGC+TGG + chr2.3:68880855-68880874 None:intergenic 35.0%
TCAACATAAGCTTCGAACAT+AGG + chr2.3:68879977-68879996 None:intergenic 35.0%
TCGTTAAGTTATTTGATCGG+AGG - chr2.3:68879589-68879608 MS.gene03093:intron 35.0%
TGCTCAATGTAGTAGCAAAA+TGG - chr2.3:68879875-68879894 MS.gene03093:CDS 35.0%
TGGAAGAAGATGATCCAATT+CGG + chr2.3:68880000-68880019 None:intergenic 35.0%
TTCTGATCTTCAAGCATTTG+TGG - chr2.3:68880326-68880345 MS.gene03093:intron 35.0%
TTTGAGGAATGAAGAACTCT+TGG + chr2.3:68880982-68881001 None:intergenic 35.0%
! AAAGTCACCTTTTGCAAAAG+AGG + chr2.3:68879187-68879206 None:intergenic 35.0%
! TCATGTTCCTCTTTTGCAAA+AGG - chr2.3:68879177-68879196 MS.gene03093:CDS 35.0%
! TTCTTGATATTTGCTGGATG+TGG - chr2.3:68879329-68879348 MS.gene03093:intron 35.0%
!! ATACTAAATGTGCTGTTTGC+GGG - chr2.3:68880709-68880728 MS.gene03093:CDS 35.0%
!! CGGATTTAATTTTGTCTTGC+AGG - chr2.3:68880194-68880213 MS.gene03093:intron 35.0%
!! GAATTATAGGGCATTGTGAT+TGG + chr2.3:68879538-68879557 None:intergenic 35.0%
AGTTGCCACTGATAATAGAG+CGG - chr2.3:68880392-68880411 MS.gene03093:intron 40.0%
ATACACGTATTGTGGAAGGA+GGG - chr2.3:68880102-68880121 MS.gene03093:intron 40.0%
ATATTTGACAGACCCATCAC+AGG - chr2.3:68880798-68880817 MS.gene03093:intron 40.0%
ATCGGAGGTGATTAGAAGAA+CGG - chr2.3:68879604-68879623 MS.gene03093:intron 40.0%
ATGAATCCAGCAAGAAGCTT+AGG - chr2.3:68880828-68880847 MS.gene03093:intron 40.0%
ATTCATTGATGCTCCTGTGA+TGG + chr2.3:68880814-68880833 None:intergenic 40.0%
CATTGCATCTTGAATGCATG+CGG - chr2.3:68879818-68879837 MS.gene03093:CDS 40.0%
CCCCAAACAATAGAAATTCC+AGG + chr2.3:68879398-68879417 None:intergenic 40.0%
CTTTAGATTGGTGAATTGGC+TGG - chr2.3:68880664-68880683 MS.gene03093:CDS 40.0%
GAAGCTTATGTTGACCGAAT+TGG - chr2.3:68879983-68880002 MS.gene03093:intron 40.0%
GAGCTTGTAGGTTGTTGAAA+CGG - chr2.3:68879635-68879654 MS.gene03093:intron 40.0%
GATAAAGTAGTGACACTTCC+TGG - chr2.3:68879377-68879396 MS.gene03093:intron 40.0%
GATTACCGCTCTATTATCAG+TGG + chr2.3:68880400-68880419 None:intergenic 40.0%
GGCAAGGAAAATCAATTTGC+AGG - chr2.3:68880288-68880307 MS.gene03093:intron 40.0%
TATACACGTATTGTGGAAGG+AGG - chr2.3:68880101-68880120 MS.gene03093:intron 40.0%
TCGAACATAGGCCCAAATAA+TGG + chr2.3:68879965-68879984 None:intergenic 40.0%
TGAATCCAGCAAGAAGCTTA+GGG - chr2.3:68880829-68880848 MS.gene03093:intron 40.0%
TGGTGATTTACCTGCTTCAA+TGG + chr2.3:68879518-68879537 None:intergenic 40.0%
TTCATTGATGCTCCTGTGAT+GGG + chr2.3:68880813-68880832 None:intergenic 40.0%
! AATGGAAGGTGTGAAGAGTA+TGG - chr2.3:68879893-68879912 MS.gene03093:intron 40.0%
! ATGGAAGGTGTGAAGAGTAT+GGG - chr2.3:68879894-68879913 MS.gene03093:intron 40.0%
! TGTGATTCTGAGGAATGTGT+AGG + chr2.3:68880937-68880956 None:intergenic 40.0%
!! ATAGTTGGTAGGAGAAGTTG+TGG - chr2.3:68879298-68879317 MS.gene03093:intron 40.0%
!! TACTAAATGTGCTGTTTGCG+GGG - chr2.3:68880710-68880729 MS.gene03093:CDS 40.0%
!! TAGTTGGTAGGAGAAGTTGT+GGG - chr2.3:68879299-68879318 MS.gene03093:intron 40.0%
AGGATCCTCAGAGTAATGGT+TGG - chr2.3:68879747-68879766 MS.gene03093:CDS 45.0%
CTGCTTCAATGGAAACCTTC+CGG + chr2.3:68879507-68879526 None:intergenic 45.0%
CTTGTAGGTTGTTGAAACGG+CGG - chr2.3:68879638-68879657 MS.gene03093:intron 45.0%
GTTAGAAGATTGCACCTTGG+AGG - chr2.3:68879691-68879710 MS.gene03093:intron 45.0%
TGAAATGGGCACCAGAGATA+TGG + chr2.3:68879454-68879473 None:intergenic 45.0%
TTGTAGGTTGTTGAAACGGC+GGG - chr2.3:68879639-68879658 MS.gene03093:intron 45.0%
! ATTTGCTGGATGTGGTTCTG+TGG - chr2.3:68879337-68879356 MS.gene03093:intron 45.0%
! GTCACCTATTCTAGGAGCTT+TGG - chr2.3:68880899-68880918 MS.gene03093:intron 45.0%
! TCTTCATTCCTCAAAGGTGC+AGG - chr2.3:68880987-68881006 MS.gene03093:CDS 45.0%
!! AGGAGGCATTACAGACTTAC+GGG - chr2.3:68879841-68879860 MS.gene03093:CDS 45.0%
!! CTGGCTTGTTTGTGATTCTG+AGG + chr2.3:68880947-68880966 None:intergenic 45.0%
!! GAGGAGGCATTACAGACTTA+CGG - chr2.3:68879840-68879859 MS.gene03093:CDS 45.0%
!! TGTTTGGGGACTTGCTGTTA+TGG - chr2.3:68879409-68879428 MS.gene03093:CDS 45.0%
ACCATTGCTCACACTACCAC+CGG - chr2.3:68879485-68879504 MS.gene03093:intron 50.0%
ACGGCACTTGATGAGCTTGT+AGG - chr2.3:68879623-68879642 MS.gene03093:intron 50.0%
AGATTGCACCTTGGAGGACA+TGG - chr2.3:68879697-68879716 MS.gene03093:intron 50.0%
AGTACATCCCATGTCCTCCA+AGG + chr2.3:68879708-68879727 None:intergenic 50.0%
AGTGTGAGCAATGGTGACAG+CGG + chr2.3:68879480-68879499 None:intergenic 50.0%
ATCTTGAATGCATGCGGAGG+AGG - chr2.3:68879824-68879843 MS.gene03093:CDS 50.0%
CCAGCCAAAGCTCCTAGAAT+AGG + chr2.3:68880906-68880925 None:intergenic 50.0%
CGGAAGGTTTCCATTGAAGC+AGG - chr2.3:68879505-68879524 MS.gene03093:intron 50.0%
CTTCAATGGAAACCTTCCGG+TGG + chr2.3:68879504-68879523 None:intergenic 50.0%
GAATTGGCTGGACTTGCAGT+TGG - chr2.3:68880676-68880695 MS.gene03093:CDS 50.0%
GATTGCACCTTGGAGGACAT+GGG - chr2.3:68879698-68879717 MS.gene03093:intron 50.0%
GCTCTCCAACCATTACTCTG+AGG + chr2.3:68879755-68879774 None:intergenic 50.0%
GCTTGAAGATCAGAACCAGC+TGG + chr2.3:68880321-68880340 None:intergenic 50.0%
GGGGTTAGAAGATTGCACCT+TGG - chr2.3:68879688-68879707 MS.gene03093:intron 50.0%
GGTGACAGCGGGATTGAAAT+GGG + chr2.3:68879468-68879487 None:intergenic 50.0%
TGCATCTTGAATGCATGCGG+AGG - chr2.3:68879821-68879840 MS.gene03093:CDS 50.0%
TGGTGACAGCGGGATTGAAA+TGG + chr2.3:68879469-68879488 None:intergenic 50.0%
TGTAGGTTGTTGAAACGGCG+GGG - chr2.3:68879640-68879659 MS.gene03093:intron 50.0%
TTTGCAGGAACACTTCCAGC+TGG - chr2.3:68880303-68880322 MS.gene03093:intron 50.0%
! CCTATTCTAGGAGCTTTGGC+TGG - chr2.3:68880903-68880922 MS.gene03093:intron 50.0%
! CTCAAAGGTGCAGGAAGCAA+GGG - chr2.3:68880996-68881015 MS.gene03093:CDS 50.0%
! GTTGGCTCAACACTTGCAAG+TGG - chr2.3:68880243-68880262 MS.gene03093:intron 50.0%
! TAGGAGCTTTGGCTGGTACA+TGG - chr2.3:68880910-68880929 MS.gene03093:intron 50.0%
CCTTGCTTCCTGCACCTTTG+AGG + chr2.3:68880998-68881017 None:intergenic 55.0%
GTGTGAGCAATGGTGACAGC+GGG + chr2.3:68879479-68879498 None:intergenic 55.0%
TGGGAGAAGGTGAGAGTGAG+TGG + chr2.3:68880020-68880039 None:intergenic 55.0%
TTGCTCACACTACCACCGGA+AGG - chr2.3:68879489-68879508 MS.gene03093:intron 55.0%
! CCTCAAAGGTGCAGGAAGCA+AGG - chr2.3:68880995-68881014 MS.gene03093:CDS 55.0%
! TCCGGTGGTAGTGTGAGCAA+TGG + chr2.3:68879489-68879508 None:intergenic 55.0%
! TGCTGGATGTGGTTCTGTGG+TGG - chr2.3:68879340-68879359 MS.gene03093:intron 55.0%
CTCTTGGTGAGCTCACGCAC+TGG + chr2.3:68880966-68880985 None:intergenic 60.0%
GCTGGCCCTAAGCTTCTTGC+TGG + chr2.3:68880837-68880856 None:intergenic 60.0%


Chromosome Type Strat End Strand Name
chr2.3 gene 68879088 68881028 68879088 ID=MS.gene03093
chr2.3 mRNA 68879088 68881028 68879088 ID=MS.gene03093.t1;Parent=MS.gene03093
chr2.3 exon 68880918 68881028 68880918 ID=MS.gene03093.t1.exon1;Parent=MS.gene03093.t1
chr2.3 CDS 68880918 68881028 68880918 ID=cds.MS.gene03093.t1;Parent=MS.gene03093.t1
chr2.3 exon 68880590 68880814 68880590 ID=MS.gene03093.t1.exon2;Parent=MS.gene03093.t1
chr2.3 CDS 68880590 68880814 68880590 ID=cds.MS.gene03093.t1;Parent=MS.gene03093.t1
chr2.3 exon 68879703 68879900 68879703 ID=MS.gene03093.t1.exon3;Parent=MS.gene03093.t1
chr2.3 CDS 68879703 68879900 68879703 ID=cds.MS.gene03093.t1;Parent=MS.gene03093.t1
chr2.3 exon 68879385 68879446 68879385 ID=MS.gene03093.t1.exon4;Parent=MS.gene03093.t1
chr2.3 CDS 68879385 68879446 68879385 ID=cds.MS.gene03093.t1;Parent=MS.gene03093.t1
chr2.3 exon 68879088 68879307 68879088 ID=MS.gene03093.t1.exon5;Parent=MS.gene03093.t1
chr2.3 CDS 68879088 68879307 68879088 ID=cds.MS.gene03093.t1;Parent=MS.gene03093.t1
Gene Sequence

>MS.gene03093

ATGGGTGATATTAGCAATGGAAATCTTGATGTGGTTATGAATGTAAACGATGGTGCAACAAAAAAATGTGACGACACAAGCATTGATGATCATGTTCCTCTTTTGCAAAAGGTGACTTTGTTTATCTTCCAAAAAATTAATTGTTGTTTATGGTTAATTAATTAGATGTTCTGACTAAAAAAAATGGATGTTTTGCTTTGATTGTTGAATATAGTTGGTAGGAGAAGTTGTGGGAACATTCTTCTTGATATTTGCTGGATGTGGTTCTGTGGTGGTGAACCTTAACAATGATAAAGTAGTGACACTTCCTGGAATTTCTATTGTTTGGGGACTTGCTGTTATGGTATTAGTATATTCTATTGGCCATATCTCTGGTGCCCATTTCAATCCCGCTGTCACCATTGCTCACACTACCACCGGAAGGTTTCCATTGAAGCAGGTAAATCACCAATCACAATGCCCTATAATTCATATTAAGACAAACATAATTTTCACAGCATCTCGTTAAGTTATTTGATCGGAGGTGATTAGAAGAACGGCACTTGATGAGCTTGTAGGTTGTTGAAACGGCGGGGTACCTCTAAAGAGTTTTGAATTTTTGGGGTTAGAAGATTGCACCTTGGAGGACATGGGATGTACTCTTATATAGTTGAGAAAATAGGATCCTCAGAGTAATGGTTGGAGAGCTGTTTGTTGACAATTATAGACGATGGGGTCTGTAACAGTCGAACATTGCATCTTGAATGCATGCGGAGGAGGCATTACAGACTTACGGGATCTAAACAATTGCTCAATGTAGTAGCAAAATGGAAGGTGTGAAGAGTATGGGCGAAAGCGAGTTTGAGCCTATGTGAAGAAGAAAATAGTTGGAAGACCATTATTTGGGCCTATGTTCGAAGCTTATGTTGACCGAATTGGATCATCTTCTTCCACTCACTCTCACCTTCTCCCATCCATAATTTATGTCAATATCTCTATCTCTCTAGATATTTTCTCTAAATTTTAGAGAGAGATATACACGTATTGTGGAAGGAGGGAGAAAGAGAGAGTGAGTGAAATGAGAGATCCTACAAAGAGAACAACCTTTTTAGGAACATTATTAACTTCGGATTTAATTTTGTCTTGCAGGTACCAGCTTATATAATTGCTCAGGTCGTTGGCTCAACACTTGCAAGTGGAGCTCTCAAACTTATATTCAGTGGCAAGGAAAATCAATTTGCAGGAACACTTCCAGCTGGTTCTGATCTTCAAGCATTTGTGGTCGAATTTATTATCACTTTCTTCCTTATGTTCATCATTTCTGGAGTTGCCACTGATAATAGAGCGGTAATCTTTTAAAAAAAAATGCCTGGTTCATAATATTAATTGATAATTATATTTCTATTAAACATTTTAATTAAGATTTAAGATATGATAATAAATTATATGAGATGAAAAATCACCTTGCCGAAATAAAATTGACTTTTTCTTTCAACAACAATAAAATGTTCATTGGCTAAATGTATAAATATATTCTATGTTTACATAAATATTATTTAACCCTGTCTAATAGTTTTTGTTTATTCATAATTTATTGCTTTAGATTGGTGAATTGGCTGGACTTGCAGTTGGATCTACAGTTATACTAAATGTGCTGTTTGCGGGGTATTGATCTCAAAACCTTACCATTATTAGATAGGTTAAAATAAAATCTAACTTGTGAGTGAAAATATATTTGACAGACCCATCACAGGAGCATCAATGAATCCAGCAAGAAGCTTAGGGCCAGCTATTGTGCACCATAAATATAGGGGAATATGGATATATATTGTGTCACCTATTCTAGGAGCTTTGGCTGGTACATGGACCTACACATTCCTCAGAATCACAAACAAGCCAGTGCGTGAGCTCACCAAGAGTTCTTCATTCCTCAAAGGTGCAGGAAGCAAGGGAGCTGAGTGA
Protein sequence

>MS.gene03093.t1

MGDISNGNLDVVMNVNDGATKKCDDTSIDDHVPLLQKLVGEVVGTFFLIFAGCGSVVVNLNNDKVVTLPGISIVWGLAVMVLVYSIGHISGAHFNPAVTIAHTTTGRFPLKQVPAYIIAQVVGSTLASGALKLIFSGKENQFAGTLPAGSDLQAFVVEFIITFFLMFIISGVATDNRAIGELAGLAVGSTVILNVLFAGPITGASMNPARSLGPAIVHHKYRGIWIYIVSPILGALAGTWTYTFLRITNKPVRELTKSSSFLKGAGSKGAE