Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene070222.t1 | XP_003594731.1 | 100 | 110 | 0 | 0 | 1 | 110 | 1 | 110 | 3.20E-49 | 204.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene070222.t1 | Q9NX55 | 37.0 | 81 | 51 | 0 | 25 | 105 | 44 | 124 | 3.1e-08 | 59.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene070222.t1 | A2Q2W3 | 100.0 | 110 | 0 | 0 | 1 | 110 | 1 | 110 | 2.3e-49 | 204.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049255 | MS.gene070222 | 0.806795 | 6.92E-50 | -1.69E-46 |
| MS.gene049703 | MS.gene070222 | -0.807996 | 3.85E-50 | -1.69E-46 |
| MS.gene049756 | MS.gene070222 | 0.817826 | 2.70E-52 | -1.69E-46 |
| MS.gene049857 | MS.gene070222 | 0.80673 | 7.14E-50 | -1.69E-46 |
| MS.gene049887 | MS.gene070222 | 0.813604 | 2.35E-51 | -1.69E-46 |
| MS.gene050114 | MS.gene070222 | 0.811338 | 7.36E-51 | -1.69E-46 |
| MS.gene050277 | MS.gene070222 | 0.884282 | 2.19E-71 | -1.69E-46 |
| MS.gene050317 | MS.gene070222 | 0.849778 | 2.60E-60 | -1.69E-46 |
| MS.gene050320 | MS.gene070222 | 0.827312 | 1.68E-54 | -1.69E-46 |
| MS.gene050437 | MS.gene070222 | 0.814304 | 1.65E-51 | -1.69E-46 |
| MS.gene050689 | MS.gene070222 | 0.812333 | 4.47E-51 | -1.69E-46 |
| MS.gene050752 | MS.gene070222 | 0.82125 | 4.46E-53 | -1.69E-46 |
| MS.gene050838 | MS.gene070222 | 0.843898 | 1.06E-58 | -1.69E-46 |
| MS.gene051063 | MS.gene070222 | 0.84442 | 7.64E-59 | -1.69E-46 |
| MS.gene051233 | MS.gene070222 | 0.82102 | 5.04E-53 | -1.69E-46 |
| MS.gene051243 | MS.gene070222 | 0.811638 | 6.34E-51 | -1.69E-46 |
| MS.gene051245 | MS.gene070222 | 0.888489 | 5.64E-73 | -1.69E-46 |
| MS.gene051328 | MS.gene070222 | 0.811267 | 7.63E-51 | -1.69E-46 |
| MS.gene051343 | MS.gene070222 | 0.800151 | 1.65E-48 | -1.69E-46 |
| MS.gene05134 | MS.gene070222 | 0.818027 | 2.43E-52 | -1.69E-46 |
| MS.gene051451 | MS.gene070222 | 0.83964 | 1.40E-57 | -1.69E-46 |
| MS.gene051633 | MS.gene070222 | 0.815483 | 9.04E-52 | -1.69E-46 |
| MS.gene051746 | MS.gene070222 | 0.842459 | 2.55E-58 | -1.69E-46 |
| MS.gene051748 | MS.gene070222 | 0.86112 | 1.28E-63 | -1.69E-46 |
| MS.gene051756 | MS.gene070222 | 0.872536 | 2.95E-67 | -1.69E-46 |
| MS.gene051757 | MS.gene070222 | 0.835795 | 1.36E-56 | -1.69E-46 |
| MS.gene051850 | MS.gene070222 | 0.807702 | 4.44E-50 | -1.69E-46 |
| MS.gene051903 | MS.gene070222 | 0.873986 | 9.61E-68 | -1.69E-46 |
| MS.gene052202 | MS.gene070222 | 0.820527 | 6.54E-53 | -1.69E-46 |
| MS.gene052286 | MS.gene070222 | 0.821107 | 4.81E-53 | -1.69E-46 |
| MS.gene052302 | MS.gene070222 | 0.831334 | 1.77E-55 | -1.69E-46 |
| MS.gene052376 | MS.gene070222 | 0.824029 | 1.01E-53 | -1.69E-46 |
| MS.gene052434 | MS.gene070222 | 0.807862 | 4.11E-50 | -1.69E-46 |
| MS.gene052527 | MS.gene070222 | 0.831503 | 1.61E-55 | -1.69E-46 |
| MS.gene052856 | MS.gene070222 | 0.820256 | 7.55E-53 | -1.69E-46 |
| MS.gene052947 | MS.gene070222 | 0.828939 | 6.80E-55 | -1.69E-46 |
| MS.gene053058 | MS.gene070222 | 0.820112 | 8.15E-53 | -1.69E-46 |
| MS.gene053109 | MS.gene070222 | 0.855865 | 4.74E-62 | -1.69E-46 |
| MS.gene053381 | MS.gene070222 | 0.828576 | 8.32E-55 | -1.69E-46 |
| MS.gene053952 | MS.gene070222 | 0.852181 | 5.46E-61 | -1.69E-46 |
| MS.gene054403 | MS.gene070222 | 0.814085 | 1.84E-51 | -1.69E-46 |
| MS.gene05469 | MS.gene070222 | 0.808063 | 3.72E-50 | -1.69E-46 |
| MS.gene055162 | MS.gene070222 | 0.80552 | 1.28E-49 | -1.69E-46 |
| MS.gene055174 | MS.gene070222 | 0.804517 | 2.08E-49 | -1.69E-46 |
| MS.gene055311 | MS.gene070222 | 0.821618 | 3.67E-53 | -1.69E-46 |
| MS.gene055424 | MS.gene070222 | 0.834869 | 2.33E-56 | -1.69E-46 |
| MS.gene055441 | MS.gene070222 | 0.817831 | 2.69E-52 | -1.69E-46 |
| MS.gene055591 | MS.gene070222 | -0.810222 | 1.28E-50 | -1.69E-46 |
| MS.gene056181 | MS.gene070222 | 0.809023 | 2.32E-50 | -1.69E-46 |
| MS.gene056432 | MS.gene070222 | 0.842384 | 2.67E-58 | -1.69E-46 |
| MS.gene056580 | MS.gene070222 | 0.845506 | 3.89E-59 | -1.69E-46 |
| MS.gene056601 | MS.gene070222 | 0.821331 | 4.27E-53 | -1.69E-46 |
| MS.gene056631 | MS.gene070222 | 0.846953 | 1.57E-59 | -1.69E-46 |
| MS.gene056760 | MS.gene070222 | 0.828072 | 1.10E-54 | -1.69E-46 |
| MS.gene056787 | MS.gene070222 | 0.819498 | 1.13E-52 | -1.69E-46 |
| MS.gene057057 | MS.gene070222 | 0.865978 | 3.99E-65 | -1.69E-46 |
| MS.gene057094 | MS.gene070222 | 0.858366 | 8.66E-63 | -1.69E-46 |
| MS.gene057140 | MS.gene070222 | 0.847435 | 1.16E-59 | -1.69E-46 |
| MS.gene057234 | MS.gene070222 | 0.890175 | 1.25E-73 | -1.69E-46 |
| MS.gene057452 | MS.gene070222 | -0.824098 | 9.70E-54 | -1.69E-46 |
| MS.gene05781 | MS.gene070222 | 0.813318 | 2.72E-51 | -1.69E-46 |
| MS.gene057999 | MS.gene070222 | 0.82005 | 8.42E-53 | -1.69E-46 |
| MS.gene058054 | MS.gene070222 | 0.806834 | 6.78E-50 | -1.69E-46 |
| MS.gene058055 | MS.gene070222 | 0.847193 | 1.35E-59 | -1.69E-46 |
| MS.gene05809 | MS.gene070222 | 0.803661 | 3.13E-49 | -1.69E-46 |
| MS.gene058182 | MS.gene070222 | 0.844104 | 9.30E-59 | -1.69E-46 |
| MS.gene058238 | MS.gene070222 | 0.869083 | 4.04E-66 | -1.69E-46 |
| MS.gene058646 | MS.gene070222 | 0.827107 | 1.88E-54 | -1.69E-46 |
| MS.gene058654 | MS.gene070222 | 0.842684 | 2.22E-58 | -1.69E-46 |
| MS.gene058906 | MS.gene070222 | 0.882365 | 1.11E-70 | -1.69E-46 |
| MS.gene059050 | MS.gene070222 | 0.805359 | 1.39E-49 | -1.69E-46 |
| MS.gene059171 | MS.gene070222 | 0.81012 | 1.35E-50 | -1.69E-46 |
| MS.gene059360 | MS.gene070222 | 0.833123 | 6.39E-56 | -1.69E-46 |
| MS.gene059830 | MS.gene070222 | 0.810661 | 1.03E-50 | -1.69E-46 |
| MS.gene059898 | MS.gene070222 | 0.862496 | 4.86E-64 | -1.69E-46 |
| MS.gene06001 | MS.gene070222 | 0.873928 | 1.00E-67 | -1.69E-46 |
| MS.gene060084 | MS.gene070222 | 0.810412 | 1.17E-50 | -1.69E-46 |
| MS.gene06010 | MS.gene070222 | 0.801252 | 9.83E-49 | -1.69E-46 |
| MS.gene06011 | MS.gene070222 | 0.826482 | 2.65E-54 | -1.69E-46 |
| MS.gene060297 | MS.gene070222 | 0.829338 | 5.44E-55 | -1.69E-46 |
| MS.gene060463 | MS.gene070222 | 0.839438 | 1.58E-57 | -1.69E-46 |
| MS.gene060465 | MS.gene070222 | 0.846867 | 1.66E-59 | -1.69E-46 |
| MS.gene060702 | MS.gene070222 | 0.837442 | 5.18E-57 | -1.69E-46 |
| MS.gene060763 | MS.gene070222 | 0.813179 | 2.92E-51 | -1.69E-46 |
| MS.gene060869 | MS.gene070222 | 0.815713 | 8.03E-52 | -1.69E-46 |
| MS.gene060870 | MS.gene070222 | 0.807964 | 3.91E-50 | -1.69E-46 |
| MS.gene061145 | MS.gene070222 | 0.856599 | 2.89E-62 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene070222.t1 | MTR_2g034010 | 100.000 | 110 | 0 | 0 | 1 | 110 | 1 | 110 | 1.88e-74 | 216 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene070222.t1 | AT3G06610 | 80.000 | 110 | 21 | 1 | 1 | 109 | 1 | 110 | 2.24e-56 | 170 |
Find 17 sgRNAs with CRISPR-Local
Find 228 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TATATAACAGTTGGACAAAA+AGG | 0.270788 | 2.2:-54820368 | MS.gene070222:intron |
| ACTCTGCTGTTGCATGTCTT+TGG | 0.288649 | 2.2:+54823421 | None:intergenic |
| CTGCTTCTGCTGAAGCTGAT+TGG | 0.380996 | 2.2:-54823316 | MS.gene070222:CDS |
| TGGAGACGAAGGAGTGGAGA+TGG | 0.452107 | 2.2:-54823453 | MS.gene070222:CDS |
| ATTGGAATGCTATGCGTTTG+AGG | 0.478356 | 2.2:-54823298 | MS.gene070222:intron |
| AGGACCTTGCGTGAGCATAA+AGG | 0.482732 | 2.2:-54820337 | MS.gene070222:CDS |
| AGCTTCAGCAGAAGCAGCAA+TGG | 0.492964 | 2.2:+54823322 | None:intergenic |
| AACTCGTGTTCAAGAAGCTA+TGG | 0.509528 | 2.2:-54823348 | MS.gene070222:CDS |
| GGAGGGTGGAGACGAAGGAG+TGG | 0.517925 | 2.2:-54823459 | MS.gene070222:CDS |
| GCGGTCAGTGAGTTTATCGA+AGG | 0.611692 | 2.2:+54823394 | None:intergenic |
| AGACGAAGGAGTGGAGATGG+TGG | 0.620347 | 2.2:-54823450 | MS.gene070222:CDS |
| GAACACGAGTTGAATCAAGC+TGG | 0.629690 | 2.2:+54823360 | None:intergenic |
| TATAATTGCAAACGAACTAG+AGG | 0.633062 | 2.2:-54820465 | MS.gene070222:intron |
| AAAATGGAGGGTGGAGACGA+AGG | 0.644266 | 2.2:-54823464 | MS.gene070222:CDS |
| CTAGTGAAGCAAATGACGAA+TGG | 0.649500 | 2.2:+54820300 | None:intergenic |
| ATCACCTTTATGCTCACGCA+AGG | 0.659657 | 2.2:+54820333 | None:intergenic |
| CAAGCTGGCGATCTTCAACG+CGG | 0.793472 | 2.2:+54823375 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAATTGTTAATTTTGAATTT+TGG | - | chr2.2:54822553-54822572 | MS.gene070222:intron | 10.0% |
| !!! | AATTGTTAATTTTGAATTTT+GGG | - | chr2.2:54822554-54822573 | MS.gene070222:intron | 10.0% |
| !! | AAATATCAAAAAAAGAACAA+AGG | + | chr2.2:54822902-54822921 | None:intergenic | 15.0% |
| !! | AATAAGCTTAAAACATATTA+TGG | - | chr2.2:54821108-54821127 | MS.gene070222:intron | 15.0% |
| !!! | AAAGTTTAATTTTTTCTGTA+TGG | - | chr2.2:54820662-54820681 | MS.gene070222:intron | 15.0% |
| !!! | AAATTGCTAATTTTTGAATT+TGG | - | chr2.2:54821860-54821879 | MS.gene070222:intron | 15.0% |
| !!! | AAGTTTAATTTTTTCTGTAT+GGG | - | chr2.2:54820663-54820682 | MS.gene070222:intron | 15.0% |
| !!! | AATTGCTAATTTTTGAATTT+GGG | - | chr2.2:54821861-54821880 | MS.gene070222:intron | 15.0% |
| !!! | AGTTCTTAAATTTTAATGTT+AGG | - | chr2.2:54822778-54822797 | MS.gene070222:intron | 15.0% |
| !!! | TTAAATTTTAATGTTAGGTT+TGG | - | chr2.2:54822783-54822802 | MS.gene070222:intron | 15.0% |
| !! | AAAAACTATAGATCAAACTA+TGG | - | chr2.2:54821728-54821747 | MS.gene070222:intron | 20.0% |
| !! | ATTATATGTTGTATTACTAG+TGG | - | chr2.2:54823039-54823058 | MS.gene070222:intron | 20.0% |
| !! | TAATCAATGAATCTAAAAAG+TGG | + | chr2.2:54820916-54820935 | None:intergenic | 20.0% |
| !! | TATAATACCAGAACATAAAA+AGG | + | chr2.2:54823025-54823044 | None:intergenic | 20.0% |
| !! | TCAAAATCTATTTGCAAAAA+AGG | + | chr2.2:54821837-54821856 | None:intergenic | 20.0% |
| !!! | AACTTAATGATGGAAATTAT+AGG | - | chr2.2:54821268-54821287 | MS.gene070222:intron | 20.0% |
| !!! | AGAAAAGTATGTTAATTGAT+TGG | + | chr2.2:54823373-54823392 | None:intergenic | 20.0% |
| !!! | ATGTATTTTGATTGAATCAT+AGG | - | chr2.2:54823229-54823248 | MS.gene070222:intron | 20.0% |
| !!! | ATTGCTAATTTTTGAATTTG+GGG | - | chr2.2:54821862-54821881 | MS.gene070222:intron | 20.0% |
| !!! | CATATAGATTTTAAGTTAGA+TGG | - | chr2.2:54820764-54820783 | MS.gene070222:intron | 20.0% |
| !!! | GTAAATTTCTAGATAGATTT+CGG | + | chr2.2:54823343-54823362 | None:intergenic | 20.0% |
| !!! | TACTTTTCTTATATAACAGT+TGG | - | chr2.2:54823384-54823403 | MS.gene070222:CDS | 20.0% |
| !!! | TATTCCTATTTTTTCTTTGT+AGG | + | chr2.2:54822205-54822224 | None:intergenic | 20.0% |
| !!! | TCATATGTTCAACATTTTAA+TGG | + | chr2.2:54822678-54822697 | None:intergenic | 20.0% |
| !!! | TGTATTTTGATTGAATCATA+GGG | - | chr2.2:54823230-54823249 | MS.gene070222:intron | 20.0% |
| ! | AAAGATGATGAAAGATCATT+AGG | - | chr2.2:54821903-54821922 | MS.gene070222:intron | 25.0% |
| ! | AAATCTATTTGCAAAAAAGG+TGG | + | chr2.2:54821834-54821853 | None:intergenic | 25.0% |
| ! | AATCTATTTGCAAAAAAGGT+GGG | + | chr2.2:54821833-54821852 | None:intergenic | 25.0% |
| ! | ACAATACTTGTAATATTGCA+TGG | - | chr2.2:54822111-54822130 | MS.gene070222:intron | 25.0% |
| ! | ACATAAGTAGTAAGAAATAG+AGG | - | chr2.2:54821696-54821715 | MS.gene070222:intron | 25.0% |
| ! | ACCTAAGTACAATAAGTATA+TGG | - | chr2.2:54821234-54821253 | MS.gene070222:intron | 25.0% |
| ! | ATAGAGATTTCGAAGTAAAT+AGG | - | chr2.2:54822424-54822443 | MS.gene070222:intron | 25.0% |
| ! | ATGCAATTCTAACTTAATGA+TGG | - | chr2.2:54821258-54821277 | MS.gene070222:intron | 25.0% |
| ! | ATTTCTATACATAACTTCAG+GGG | + | chr2.2:54823138-54823157 | None:intergenic | 25.0% |
| ! | CATAAGTAGTAAGAAATAGA+GGG | - | chr2.2:54821697-54821716 | MS.gene070222:intron | 25.0% |
| ! | GATTTCTATACATAACTTCA+GGG | + | chr2.2:54823139-54823158 | None:intergenic | 25.0% |
| ! | TAAAGATGCGAATCTTATAT+TGG | - | chr2.2:54822172-54822191 | MS.gene070222:intron | 25.0% |
| ! | TACTTAGGTTCTATTTGAAT+TGG | + | chr2.2:54821223-54821242 | None:intergenic | 25.0% |
| ! | TATATAACAGTTGGACAAAA+AGG | - | chr2.2:54823393-54823412 | MS.gene070222:CDS | 25.0% |
| ! | TATTCAATGAACCTAAAATG+TGG | - | chr2.2:54820989-54821008 | MS.gene070222:intron | 25.0% |
| ! | TATTTACTTCGAAATCTCTA+TGG | + | chr2.2:54822425-54822444 | None:intergenic | 25.0% |
| ! | TCCATATACTTATTGTACTT+AGG | + | chr2.2:54821238-54821257 | None:intergenic | 25.0% |
| ! | TGATTTCTATACATAACTTC+AGG | + | chr2.2:54823140-54823159 | None:intergenic | 25.0% |
| ! | TTAATGACTCTATAAACAAG+TGG | - | chr2.2:54820720-54820739 | MS.gene070222:intron | 25.0% |
| ! | TTTAGTTATTGGGAATTAGA+GGG | - | chr2.2:54820570-54820589 | MS.gene070222:intron | 25.0% |
| !! | ATTAAGTTGTTTATCCAAAC+AGG | + | chr2.2:54820851-54820870 | None:intergenic | 25.0% |
| !! | CATTGATTAACATCAATATC+TGG | - | chr2.2:54820927-54820946 | MS.gene070222:intron | 25.0% |
| !! | CTATTTCTTACTACTTATGT+AGG | + | chr2.2:54821696-54821715 | None:intergenic | 25.0% |
| !! | GTTTGATCTATAGTTTTTCT+TGG | + | chr2.2:54821726-54821745 | None:intergenic | 25.0% |
| !! | TCAATATCTGGTCTATATTT+TGG | - | chr2.2:54820939-54820958 | MS.gene070222:intron | 25.0% |
| !! | TCTAACATGTTTTCTACAAT+AGG | + | chr2.2:54822264-54822283 | None:intergenic | 25.0% |
| !! | TCTGAAATTTCTAAAAGCAT+AGG | - | chr2.2:54822871-54822890 | MS.gene070222:intron | 25.0% |
| !! | TTGCTAATTTTTGAATTTGG+GGG | - | chr2.2:54821863-54821882 | MS.gene070222:intron | 25.0% |
| !! | TTTTTGCTTATAATAGTGAC+AGG | + | chr2.2:54820892-54820911 | None:intergenic | 25.0% |
| !!! | AACCTAAAATGTGGTTTTTT+AGG | - | chr2.2:54820998-54821017 | MS.gene070222:intron | 25.0% |
| !!! | AGAATGAGGTTTTTAGTTAT+TGG | - | chr2.2:54820559-54820578 | MS.gene070222:intron | 25.0% |
| !!! | AGATTTTAAGTTAGATGGTT+GGG | - | chr2.2:54820769-54820788 | MS.gene070222:intron | 25.0% |
| !!! | GAATGAGGTTTTTAGTTATT+GGG | - | chr2.2:54820560-54820579 | MS.gene070222:intron | 25.0% |
| !!! | GAGTAATGAATAAGTTGATT+CGG | - | chr2.2:54821953-54821972 | MS.gene070222:intron | 25.0% |
| !!! | TAAAATGTGGTTTTTTAGGT+GGG | - | chr2.2:54821002-54821021 | MS.gene070222:intron | 25.0% |
| !!! | TAAATACTCAAGTTGAAAAC+TGG | + | chr2.2:54822850-54822869 | None:intergenic | 25.0% |
| !!! | TAGATTTTAAGTTAGATGGT+TGG | - | chr2.2:54820768-54820787 | MS.gene070222:intron | 25.0% |
| !!! | TTTTAGTTATTGGGAATTAG+AGG | - | chr2.2:54820569-54820588 | MS.gene070222:intron | 25.0% |
| AAATGTTGAACATATGAAGC+AGG | - | chr2.2:54822681-54822700 | MS.gene070222:intron | 30.0% | |
| AACTTTACTGCACAACTATA+AGG | - | chr2.2:54821463-54821482 | MS.gene070222:intron | 30.0% | |
| AATGTTGAACATATGAAGCA+GGG | - | chr2.2:54822682-54822701 | MS.gene070222:intron | 30.0% | |
| AATTTAAGAACTTTGTCTCG+AGG | + | chr2.2:54822770-54822789 | None:intergenic | 30.0% | |
| ATAGAGGAAGTCAATATTGT+AGG | - | chr2.2:54822394-54822413 | MS.gene070222:intron | 30.0% | |
| ATCAAACTATGGTGATTTAG+AGG | - | chr2.2:54821739-54821758 | MS.gene070222:intron | 30.0% | |
| ATCTATTTGCAAAAAAGGTG+GGG | + | chr2.2:54821832-54821851 | None:intergenic | 30.0% | |
| ATGCGAATCTTATATTGGAT+TGG | - | chr2.2:54822177-54822196 | MS.gene070222:intron | 30.0% | |
| CGAAGTAAATAGGTTATCTT+CGG | - | chr2.2:54822434-54822453 | MS.gene070222:intron | 30.0% | |
| CTTCATCCAAAGTTATGAAA+AGG | - | chr2.2:54821333-54821352 | MS.gene070222:intron | 30.0% | |
| GTTCATCATTACAATGCAAA+GGG | + | chr2.2:54823003-54823022 | None:intergenic | 30.0% | |
| GTTGAAATTTACCAGTGTTT+GGG | - | chr2.2:54822704-54822723 | MS.gene070222:intron | 30.0% | |
| TAGAGGAAGATGTAAACAAT+AGG | - | chr2.2:54821356-54821375 | MS.gene070222:intron | 30.0% | |
| TATAATTGCAAACGAACTAG+AGG | - | chr2.2:54823296-54823315 | MS.gene070222:intron | 30.0% | |
| TATTGCATGGAATTGAATGT+TGG | - | chr2.2:54822124-54822143 | MS.gene070222:intron | 30.0% | |
| TCAATGATTAGAGAGAGATA+GGG | - | chr2.2:54822230-54822249 | MS.gene070222:intron | 30.0% | |
| TGGTGTCTACAAAGAAAAAT+AGG | - | chr2.2:54821579-54821598 | MS.gene070222:intron | 30.0% | |
| TTAGTTATTGGGAATTAGAG+GGG | - | chr2.2:54820571-54820590 | MS.gene070222:intron | 30.0% | |
| TTATCTTTGAACTTGATGCA+TGG | - | chr2.2:54821770-54821789 | MS.gene070222:intron | 30.0% | |
| TTCAATGATTAGAGAGAGAT+AGG | - | chr2.2:54822229-54822248 | MS.gene070222:intron | 30.0% | |
| TTTACAAATACAGCCAAAAC+AGG | + | chr2.2:54823179-54823198 | None:intergenic | 30.0% | |
| ! | AAAACCCTTTTCCATTAGAT+GGG | + | chr2.2:54822510-54822529 | None:intergenic | 30.0% |
| ! | AACATGTTTTCTACAATAGG+AGG | + | chr2.2:54822261-54822280 | None:intergenic | 30.0% |
| ! | CACCTAAAAAACCACATTTT+AGG | + | chr2.2:54821003-54821022 | None:intergenic | 30.0% |
| ! | CTTTTCATAACTTTGGATGA+AGG | + | chr2.2:54821335-54821354 | None:intergenic | 30.0% |
| ! | GTTCTTCTGTGTGAAAATTT+TGG | - | chr2.2:54820536-54820555 | MS.gene070222:intron | 30.0% |
| ! | TAAAGTACTTGTTTAGCTGA+AGG | - | chr2.2:54823067-54823086 | MS.gene070222:intron | 30.0% |
| ! | TGATGAACCTTTTTATGTTC+TGG | - | chr2.2:54823015-54823034 | MS.gene070222:intron | 30.0% |
| ! | TGCTATGTTTTCTACAATGA+GGG | + | chr2.2:54821635-54821654 | None:intergenic | 30.0% |
| !! | AATTTTCCTTCAGGTTTGAA+TGG | + | chr2.2:54822079-54822098 | None:intergenic | 30.0% |
| !! | AGCTTATTTTCATAAGCTCT+TGG | + | chr2.2:54821096-54821115 | None:intergenic | 30.0% |
| !! | GAATAAGTTGATTCGGTTAA+AGG | - | chr2.2:54821960-54821979 | MS.gene070222:intron | 30.0% |
| !! | TGTGAAAATTTTGGAGAATG+AGG | - | chr2.2:54820545-54820564 | MS.gene070222:intron | 30.0% |
| !!! | ACATTGATTCAGTTTTTCTG+TGG | - | chr2.2:54820499-54820518 | MS.gene070222:CDS | 30.0% |
| !!! | ATTTTGGGATTACTTACACA+AGG | - | chr2.2:54822569-54822588 | MS.gene070222:intron | 30.0% |
| !!! | CATTGATTCAGTTTTTCTGT+GGG | - | chr2.2:54820500-54820519 | MS.gene070222:CDS | 30.0% |
| !!! | CTAAAATGTGGTTTTTTAGG+TGG | - | chr2.2:54821001-54821020 | MS.gene070222:intron | 30.0% |
| AAACCTGTATAAGCAATGGT+TGG | - | chr2.2:54822318-54822337 | MS.gene070222:intron | 35.0% | |
| AAAGAAACACTCAAACCTTG+AGG | - | chr2.2:54821438-54821457 | MS.gene070222:intron | 35.0% | |
| AAATAGGTTATCTTCGGACA+TGG | - | chr2.2:54822440-54822459 | MS.gene070222:intron | 35.0% | |
| AACAAGCTAGTGTAAGTACT+AGG | - | chr2.2:54822735-54822754 | MS.gene070222:intron | 35.0% | |
| AACCTGTATAAGCAATGGTT+GGG | - | chr2.2:54822319-54822338 | MS.gene070222:intron | 35.0% | |
| ACAAGCACGATTAAAATGCT+GGG | - | chr2.2:54821987-54822006 | MS.gene070222:intron | 35.0% | |
| ACATACCAAACAACCTAAGA+TGG | + | chr2.2:54821663-54821682 | None:intergenic | 35.0% | |
| ACATGTTAGAGTTTCGTCTT+AGG | - | chr2.2:54822274-54822293 | MS.gene070222:intron | 35.0% | |
| AGAGATGTGAAGTTAAGTCT+TGG | - | chr2.2:54820813-54820832 | MS.gene070222:intron | 35.0% | |
| AGTCATACAGTAAGAGATAG+AGG | - | chr2.2:54822378-54822397 | MS.gene070222:intron | 35.0% | |
| ATAACAGTTGGACAAAAAGG+TGG | - | chr2.2:54823396-54823415 | MS.gene070222:CDS | 35.0% | |
| ATCTTTGTTGCGCAAATGAA+TGG | + | chr2.2:54822928-54822947 | None:intergenic | 35.0% | |
| ATGAGAATCTTGTACTGGAT+TGG | - | chr2.2:54821559-54821578 | MS.gene070222:intron | 35.0% | |
| ATTTGGGGGTAAATTACACA+TGG | - | chr2.2:54821877-54821896 | MS.gene070222:intron | 35.0% | |
| CATACCAAACAACCTAAGAT+GGG | + | chr2.2:54821662-54821681 | None:intergenic | 35.0% | |
| CATGGAGTTGAATATTCGTA+TGG | - | chr2.2:54821498-54821517 | MS.gene070222:intron | 35.0% | |
| CATTGAATAACTGACGTATC+TGG | + | chr2.2:54820978-54820997 | None:intergenic | 35.0% | |
| CCAAAGTTATGAAAAGGTAG+AGG | - | chr2.2:54821339-54821358 | MS.gene070222:intron | 35.0% | |
| CTTTCAAACAGTGTTATGTC+AGG | - | chr2.2:54821158-54821177 | MS.gene070222:intron | 35.0% | |
| GAAGTTCATGAAAGACCATT+AGG | - | chr2.2:54822595-54822614 | MS.gene070222:intron | 35.0% | |
| GAGAAAACCTGTATAAGCAA+TGG | - | chr2.2:54822314-54822333 | MS.gene070222:intron | 35.0% | |
| GAGTTGAATATTCGTATGGA+TGG | - | chr2.2:54821502-54821521 | MS.gene070222:intron | 35.0% | |
| GCTTATAATAGTGACAGGAA+TGG | + | chr2.2:54820887-54820906 | None:intergenic | 35.0% | |
| GGAAACACAATATTCCTGTT+TGG | - | chr2.2:54820834-54820853 | MS.gene070222:intron | 35.0% | |
| GGTGCCTACAAAGAAAAAAT+AGG | - | chr2.2:54822198-54822217 | MS.gene070222:intron | 35.0% | |
| GGTTCATCATTACAATGCAA+AGG | + | chr2.2:54823004-54823023 | None:intergenic | 35.0% | |
| GGTTGAAATTTACCAGTGTT+TGG | - | chr2.2:54822703-54822722 | MS.gene070222:intron | 35.0% | |
| TAGAGATGAGAATCTTGTAC+TGG | - | chr2.2:54821554-54821573 | MS.gene070222:intron | 35.0% | |
| TAGTGTAAGTACTAGGAACA+GGG | - | chr2.2:54822742-54822761 | MS.gene070222:intron | 35.0% | |
| TAGTTATTGGGAATTAGAGG+GGG | - | chr2.2:54820572-54820591 | MS.gene070222:intron | 35.0% | |
| TCTAAGTAGAGTGGATCAAA+TGG | - | chr2.2:54822017-54822036 | MS.gene070222:intron | 35.0% | |
| TGGATGGTATACAACTAACA+AGG | - | chr2.2:54821518-54821537 | MS.gene070222:intron | 35.0% | |
| TTTGAACTTGATGCATGGAA+GGG | - | chr2.2:54821775-54821794 | MS.gene070222:intron | 35.0% | |
| ! | ATGCTGCAATTCATCGTTTT+TGG | - | chr2.2:54821299-54821318 | MS.gene070222:intron | 35.0% |
| ! | CAAAACCCTTTTCCATTAGA+TGG | + | chr2.2:54822511-54822530 | None:intergenic | 35.0% |
| ! | CATCTAATGGAAAAGGGTTT+TGG | - | chr2.2:54822509-54822528 | MS.gene070222:intron | 35.0% |
| ! | CCTCTACCTTTTCATAACTT+TGG | + | chr2.2:54821342-54821361 | None:intergenic | 35.0% |
| ! | CTGCTATGTTTTCTACAATG+AGG | + | chr2.2:54821636-54821655 | None:intergenic | 35.0% |
| ! | GAAAACTGGCACAGTTTTTA+GGG | + | chr2.2:54822836-54822855 | None:intergenic | 35.0% |
| ! | TGAAAACTGGCACAGTTTTT+AGG | + | chr2.2:54822837-54822856 | None:intergenic | 35.0% |
| ! | TGAAAGATCATTAGGCCTTT+TGG | - | chr2.2:54821911-54821930 | MS.gene070222:intron | 35.0% |
| ! | TGAGCAGTAAATTTTCCTTC+AGG | + | chr2.2:54822088-54822107 | None:intergenic | 35.0% |
| !! | AGTGACAGGAATGGATTAAA+TGG | + | chr2.2:54820878-54820897 | None:intergenic | 35.0% |
| !! | GTAATGACTAGGTTGGTTAA+AGG | - | chr2.2:54822647-54822666 | MS.gene070222:intron | 35.0% |
| !! | TAAGTTGATTCGGTTAAAGG+TGG | - | chr2.2:54821963-54821982 | MS.gene070222:intron | 35.0% |
| !! | TCTAAGCAGAGTTGATGAAA+AGG | - | chr2.2:54821380-54821399 | MS.gene070222:intron | 35.0% |
| !!! | ATTAGGCCTTTTGGCTTAAT+GGG | - | chr2.2:54822612-54822631 | MS.gene070222:intron | 35.0% |
| !!! | ATTAGGCCTTTTGGTTTGAT+GGG | - | chr2.2:54821920-54821939 | MS.gene070222:intron | 35.0% |
| !!! | ATTCATCGTTTTTGGTACCT+TGG | - | chr2.2:54821307-54821326 | MS.gene070222:intron | 35.0% |
| !!! | TTCATCGTTTTTGGTACCTT+GGG | - | chr2.2:54821308-54821327 | MS.gene070222:intron | 35.0% |
| AACTCGTGTTCAAGAAGCTA+TGG | - | chr2.2:54820413-54820432 | MS.gene070222:intron | 40.0% | |
| AAGTAGAGTGGATCAAATGG+AGG | - | chr2.2:54822020-54822039 | MS.gene070222:intron | 40.0% | |
| AATAGCCCCATCAAACCAAA+AGG | + | chr2.2:54821929-54821948 | None:intergenic | 40.0% | |
| AATGGTCCCATTAAGCCAAA+AGG | + | chr2.2:54822621-54822640 | None:intergenic | 40.0% | |
| ACAAATACAGCCAAAACAGG+AGG | + | chr2.2:54823176-54823195 | None:intergenic | 40.0% | |
| AGTTTCGTCTTAGGTGGTTT+GGG | - | chr2.2:54822283-54822302 | MS.gene070222:intron | 40.0% | |
| ATATAGCCGATCCCATCTAA+TGG | - | chr2.2:54822496-54822515 | MS.gene070222:intron | 40.0% | |
| ATTGGAATGCTATGCGTTTG+AGG | - | chr2.2:54820463-54820482 | MS.gene070222:intron | 40.0% | |
| ATTTGCAAAAAAGGTGGGGT+CGG | + | chr2.2:54821828-54821847 | None:intergenic | 40.0% | |
| CAAGCACGATTAAAATGCTG+GGG | - | chr2.2:54821988-54822007 | MS.gene070222:intron | 40.0% | |
| CACAAGCACGATTAAAATGC+TGG | - | chr2.2:54821986-54822005 | MS.gene070222:intron | 40.0% | |
| CATTAAGCCAAAAGGCCTAA+TGG | + | chr2.2:54822613-54822632 | None:intergenic | 40.0% | |
| CCTAGTCATTACCAAGTGAA+TGG | + | chr2.2:54822639-54822658 | None:intergenic | 40.0% | |
| CGATCCCATCTAATGGAAAA+GGG | - | chr2.2:54822503-54822522 | MS.gene070222:intron | 40.0% | |
| CTAGTGAAGCAAATGACGAA+TGG | + | chr2.2:54823464-54823483 | None:intergenic | 40.0% | |
| CTAGTGTAAGTACTAGGAAC+AGG | - | chr2.2:54822741-54822760 | MS.gene070222:intron | 40.0% | |
| CTTTGAACTTGATGCATGGA+AGG | - | chr2.2:54821774-54821793 | MS.gene070222:intron | 40.0% | |
| GCATGGAATTGAATGTTGGA+TGG | - | chr2.2:54822128-54822147 | MS.gene070222:intron | 40.0% | |
| GGGATATGATCTAAGTAGAG+TGG | - | chr2.2:54822008-54822027 | MS.gene070222:intron | 40.0% | |
| TACCACAGTTTAGAGAGACA+AGG | + | chr2.2:54823210-54823229 | None:intergenic | 40.0% | |
| TACTGCACAACTATAAGGCT+TGG | - | chr2.2:54821468-54821487 | MS.gene070222:intron | 40.0% | |
| TGATGCATGGAAGGGATTTA+TGG | - | chr2.2:54821783-54821802 | MS.gene070222:intron | 40.0% | |
| TGTTAGAGTTTCGTCTTAGG+TGG | - | chr2.2:54822277-54822296 | MS.gene070222:intron | 40.0% | |
| TTATCTTCGGACATGGTACA+TGG | - | chr2.2:54822447-54822466 | MS.gene070222:intron | 40.0% | |
| TTCCTTGTCTCTCTAAACTG+TGG | - | chr2.2:54823205-54823224 | MS.gene070222:intron | 40.0% | |
| ! | CCTTTTCCATTAGATGGGAT+CGG | + | chr2.2:54822505-54822524 | None:intergenic | 40.0% |
| ! | GAAGTACCATTCAAACCTGA+AGG | - | chr2.2:54822070-54822089 | MS.gene070222:intron | 40.0% |
| ! | GTGCAGTAAAGTTTTCCTCA+AGG | + | chr2.2:54821456-54821475 | None:intergenic | 40.0% |
| ! | TGAAAGACCATTAGGCCTTT+TGG | - | chr2.2:54822603-54822622 | MS.gene070222:intron | 40.0% |
| ! | TGGTTGATGCAAATAGGTTG+AGG | - | chr2.2:54822529-54822548 | MS.gene070222:intron | 40.0% |
| !! | AAGCAGAGTTGATGAAAAGG+AGG | - | chr2.2:54821383-54821402 | MS.gene070222:intron | 40.0% |
| !! | CCATTCACTTGGTAATGACT+AGG | - | chr2.2:54822636-54822655 | MS.gene070222:intron | 40.0% |
| !! | TCACTTGGTAATGACTAGGT+TGG | - | chr2.2:54822640-54822659 | MS.gene070222:intron | 40.0% |
| !!! | CATTAGGCCTTTTGGCTTAA+TGG | - | chr2.2:54822611-54822630 | MS.gene070222:intron | 40.0% |
| !!! | CATTAGGCCTTTTGGTTTGA+TGG | - | chr2.2:54821919-54821938 | MS.gene070222:intron | 40.0% |
| !!! | GGGTTTTGGTTGATGCAAAT+AGG | - | chr2.2:54822523-54822542 | MS.gene070222:intron | 40.0% |
| !!! | TAGAGGGGGTGTAGTTTTTT+GGG | - | chr2.2:54820586-54820605 | MS.gene070222:intron | 40.0% |
| !!! | TTAGAGGGGGTGTAGTTTTT+TGG | - | chr2.2:54820585-54820604 | MS.gene070222:intron | 40.0% |
| !!! | TTAGGCCTTTTGGTTTGATG+GGG | - | chr2.2:54821921-54821940 | MS.gene070222:intron | 40.0% |
| AACTTTGGATGAAGGACCCA+AGG | + | chr2.2:54821327-54821346 | None:intergenic | 45.0% | |
| ACATAGCAGAGTCCCATCTT+AGG | - | chr2.2:54821647-54821666 | MS.gene070222:intron | 45.0% | |
| ACTCTGCTGTTGCATGTCTT+TGG | + | chr2.2:54820343-54820362 | None:intergenic | 45.0% | |
| ATAAGGCTTGGAATGCTGCA+TGG | - | chr2.2:54821480-54821499 | MS.gene070222:intron | 45.0% | |
| ATCACCTTTATGCTCACGCA+AGG | + | chr2.2:54823431-54823450 | None:intergenic | 45.0% | |
| CCGATCCCATCTAATGGAAA+AGG | - | chr2.2:54822502-54822521 | MS.gene070222:intron | 45.0% | |
| CTCCCAACCATTGCTTATAC+AGG | + | chr2.2:54822324-54822343 | None:intergenic | 45.0% | |
| GAGTTTCGTCTTAGGTGGTT+TGG | - | chr2.2:54822282-54822301 | MS.gene070222:intron | 45.0% | |
| GCTTAATGGGACCATTCACT+TGG | - | chr2.2:54822625-54822644 | MS.gene070222:intron | 45.0% | |
| GTTGTAACAGACCCAAACAC+TGG | + | chr2.2:54822718-54822737 | None:intergenic | 45.0% | |
| TGGACAAAAAGGTGGCTGAA+AGG | - | chr2.2:54823404-54823423 | MS.gene070222:CDS | 45.0% | |
| ! | AGCCAAAACAGGAGGTACAA+CGG | + | chr2.2:54823168-54823187 | None:intergenic | 45.0% |
| ! | GAACACGAGTTGAATCAAGC+TGG | + | chr2.2:54820404-54820423 | None:intergenic | 45.0% |
| ! | GAGTCCCATCTTAGGTTGTT+TGG | - | chr2.2:54821655-54821674 | MS.gene070222:intron | 45.0% |
| !! | AACTGGCACAGTTTTTAGGG+TGG | + | chr2.2:54822833-54822852 | None:intergenic | 45.0% |
| !! | GGAGTGTTGAGAAGATGGAA+AGG | - | chr2.2:54822340-54822359 | MS.gene070222:intron | 45.0% |
| !!! | ACTGGCACAGTTTTTAGGGT+GGG | + | chr2.2:54822832-54822851 | None:intergenic | 45.0% |
| !!! | AGAGGGGGTGTAGTTTTTTG+GGG | - | chr2.2:54820587-54820606 | MS.gene070222:intron | 45.0% |
| AGCTTCAGCAGAAGCAGCAA+TGG | + | chr2.2:54820442-54820461 | None:intergenic | 50.0% | |
| AGGACCTTGCGTGAGCATAA+AGG | - | chr2.2:54823424-54823443 | MS.gene070222:CDS | 50.0% | |
| CTGCTTCTGCTGAAGCTGAT+TGG | - | chr2.2:54820445-54820464 | MS.gene070222:intron | 50.0% | |
| GCGGTCAGTGAGTTTATCGA+AGG | + | chr2.2:54820370-54820389 | None:intergenic | 50.0% | |
| TTCGGACATGGTACATGGCA+GGG | - | chr2.2:54822452-54822471 | MS.gene070222:intron | 50.0% | |
| ! | CTCCGTTGTACCTCCTGTTT+TGG | - | chr2.2:54823163-54823182 | MS.gene070222:intron | 50.0% |
| ! | TGGTACATGGCAGGGCATTA+TGG | - | chr2.2:54822460-54822479 | MS.gene070222:intron | 50.0% |
| ! | TTAGGTGGTTTGGGCATGTG+CGG | - | chr2.2:54822292-54822311 | MS.gene070222:intron | 50.0% |
| !! | GGTTGGGAGTGTTGAGAAGA+TGG | - | chr2.2:54822335-54822354 | MS.gene070222:intron | 50.0% |
| !!! | CTGGCACAGTTTTTAGGGTG+GGG | + | chr2.2:54822831-54822850 | None:intergenic | 50.0% |
| !!! | GAGGGGGTGTAGTTTTTTGG+GGG | - | chr2.2:54820588-54820607 | MS.gene070222:intron | 50.0% |
| !!! | GGGTGTAGTTTTTTGGGGGA+GGG | - | chr2.2:54820592-54820611 | MS.gene070222:intron | 50.0% |
| !!! | GGTGTAGTTTTTTGGGGGAG+GGG | - | chr2.2:54820593-54820612 | MS.gene070222:intron | 50.0% |
| !!! | GTGTAGTTTTTTGGGGGAGG+GGG | - | chr2.2:54820594-54820613 | MS.gene070222:intron | 50.0% |
| AGACGAAGGAGTGGAGATGG+TGG | - | chr2.2:54820311-54820330 | MS.gene070222:CDS | 55.0% | |
| CAAGCTGGCGATCTTCAACG+CGG | + | chr2.2:54820389-54820408 | None:intergenic | 55.0% | |
| CTTCGGACATGGTACATGGC+AGG | - | chr2.2:54822451-54822470 | MS.gene070222:intron | 55.0% | |
| TGGAGACGAAGGAGTGGAGA+TGG | - | chr2.2:54820308-54820327 | MS.gene070222:CDS | 55.0% | |
| !!! | GGGGTGTAGTTTTTTGGGGG+AGG | - | chr2.2:54820591-54820610 | MS.gene070222:intron | 55.0% |
| !!! | TTTTTTGGGGGAGGGGGTGT+TGG | - | chr2.2:54820600-54820619 | MS.gene070222:intron | 55.0% |
| GGAGGGTGGAGACGAAGGAG+TGG | - | chr2.2:54820302-54820321 | MS.gene070222:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2.2 | gene | 54820300 | 54823483 | 54820300 | ID=MS.gene070222 |
| chr2.2 | mRNA | 54820300 | 54823483 | 54820300 | ID=MS.gene070222.t1;Parent=MS.gene070222 |
| chr2.2 | exon | 54823299 | 54823483 | 54823299 | ID=MS.gene070222.t1.exon1;Parent=MS.gene070222.t1 |
| chr2.2 | CDS | 54823299 | 54823483 | 54823299 | ID=cds.MS.gene070222.t1;Parent=MS.gene070222.t1 |
| chr2.2 | exon | 54820466 | 54820532 | 54820466 | ID=MS.gene070222.t1.exon2;Parent=MS.gene070222.t1 |
| chr2.2 | CDS | 54820466 | 54820532 | 54820466 | ID=cds.MS.gene070222.t1;Parent=MS.gene070222.t1 |
| chr2.2 | exon | 54820300 | 54820380 | 54820300 | ID=MS.gene070222.t1.exon3;Parent=MS.gene070222.t1 |
| chr2.2 | CDS | 54820300 | 54820380 | 54820300 | ID=cds.MS.gene070222.t1;Parent=MS.gene070222.t1 |
| Gene Sequence |
| Protein sequence |
