Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene26426.t1 | XP_013456902.1 | 98.1 | 518 | 4 | 1 | 1 | 512 | 1 | 518 | 9.70E-285 | 988.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene26426.t1 | Q6Z6S1 | 59.8 | 508 | 188 | 6 | 8 | 514 | 7 | 499 | 1.2e-161 | 571.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene26426.t1 | A0A072UPJ9 | 98.1 | 518 | 4 | 1 | 1 | 512 | 1 | 518 | 7.0e-285 | 988.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049142 | MS.gene26426 | 0.811098 | 8.30E-51 | -1.69E-46 |
| MS.gene049166 | MS.gene26426 | 0.854913 | 8.97E-62 | -1.69E-46 |
| MS.gene049208 | MS.gene26426 | 0.83288 | 7.34E-56 | -1.69E-46 |
| MS.gene049368 | MS.gene26426 | 0.810866 | 9.32E-51 | -1.69E-46 |
| MS.gene049674 | MS.gene26426 | 0.800001 | 1.77E-48 | -1.69E-46 |
| MS.gene049685 | MS.gene26426 | 0.821697 | 3.52E-53 | -1.69E-46 |
| MS.gene049703 | MS.gene26426 | -0.8005 | 1.40E-48 | -1.69E-46 |
| MS.gene049857 | MS.gene26426 | 0.815075 | 1.11E-51 | -1.69E-46 |
| MS.gene049887 | MS.gene26426 | 0.824396 | 8.26E-54 | -1.69E-46 |
| MS.gene050084 | MS.gene26426 | 0.82353 | 1.32E-53 | -1.69E-46 |
| MS.gene050085 | MS.gene26426 | 0.848264 | 6.85E-60 | -1.69E-46 |
| MS.gene050114 | MS.gene26426 | 0.877535 | 5.81E-69 | -1.69E-46 |
| MS.gene050116 | MS.gene26426 | 0.802513 | 5.41E-49 | -1.69E-46 |
| MS.gene050277 | MS.gene26426 | 0.811567 | 6.56E-51 | -1.69E-46 |
| MS.gene050317 | MS.gene26426 | 0.865702 | 4.87E-65 | -1.69E-46 |
| MS.gene050359 | MS.gene26426 | 0.82453 | 7.68E-54 | -1.69E-46 |
| MS.gene050551 | MS.gene26426 | 0.814024 | 1.90E-51 | -1.69E-46 |
| MS.gene050654 | MS.gene26426 | 0.825971 | 3.50E-54 | -1.69E-46 |
| MS.gene050689 | MS.gene26426 | 0.83639 | 9.62E-57 | -1.69E-46 |
| MS.gene050838 | MS.gene26426 | 0.897553 | 1.26E-76 | -1.69E-46 |
| MS.gene050992 | MS.gene26426 | 0.810292 | 1.24E-50 | -1.69E-46 |
| MS.gene051003 | MS.gene26426 | 0.834829 | 2.39E-56 | -1.69E-46 |
| MS.gene051102 | MS.gene26426 | 0.814777 | 1.30E-51 | -1.69E-46 |
| MS.gene051233 | MS.gene26426 | 0.8302 | 3.36E-55 | -1.69E-46 |
| MS.gene051234 | MS.gene26426 | 0.839444 | 1.58E-57 | -1.69E-46 |
| MS.gene051343 | MS.gene26426 | 0.841121 | 5.76E-58 | -1.69E-46 |
| MS.gene051365 | MS.gene26426 | 0.805987 | 1.02E-49 | -1.69E-46 |
| MS.gene051381 | MS.gene26426 | 0.852096 | 5.78E-61 | -1.69E-46 |
| MS.gene051382 | MS.gene26426 | 0.814069 | 1.86E-51 | -1.69E-46 |
| MS.gene051642 | MS.gene26426 | 0.822957 | 1.79E-53 | -1.69E-46 |
| MS.gene051676 | MS.gene26426 | 0.822977 | 1.77E-53 | -1.69E-46 |
| MS.gene051746 | MS.gene26426 | 0.826123 | 3.22E-54 | -1.69E-46 |
| MS.gene051748 | MS.gene26426 | 0.83663 | 8.36E-57 | -1.69E-46 |
| MS.gene051756 | MS.gene26426 | 0.818293 | 2.11E-52 | -1.69E-46 |
| MS.gene051757 | MS.gene26426 | 0.804684 | 1.92E-49 | -1.69E-46 |
| MS.gene051809 | MS.gene26426 | 0.800976 | 1.12E-48 | -1.69E-46 |
| MS.gene051850 | MS.gene26426 | 0.842244 | 2.91E-58 | -1.69E-46 |
| MS.gene05188 | MS.gene26426 | 0.81391 | 2.02E-51 | -1.69E-46 |
| MS.gene051903 | MS.gene26426 | 0.825812 | 3.82E-54 | -1.69E-46 |
| MS.gene051975 | MS.gene26426 | 0.824672 | 7.11E-54 | -1.69E-46 |
| MS.gene052072 | MS.gene26426 | 0.806853 | 6.72E-50 | -1.69E-46 |
| MS.gene052307 | MS.gene26426 | 0.821331 | 4.27E-53 | -1.69E-46 |
| MS.gene052335 | MS.gene26426 | 0.823912 | 1.07E-53 | -1.69E-46 |
| MS.gene052342 | MS.gene26426 | 0.830942 | 2.21E-55 | -1.69E-46 |
| MS.gene052397 | MS.gene26426 | 0.825725 | 4.01E-54 | -1.69E-46 |
| MS.gene052434 | MS.gene26426 | 0.86717 | 1.67E-65 | -1.69E-46 |
| MS.gene052527 | MS.gene26426 | 0.817411 | 3.34E-52 | -1.69E-46 |
| MS.gene052609 | MS.gene26426 | 0.851194 | 1.04E-60 | -1.69E-46 |
| MS.gene052947 | MS.gene26426 | 0.818371 | 2.03E-52 | -1.69E-46 |
| MS.gene053058 | MS.gene26426 | 0.850918 | 1.24E-60 | -1.69E-46 |
| MS.gene053109 | MS.gene26426 | 0.831292 | 1.81E-55 | -1.69E-46 |
| MS.gene053143 | MS.gene26426 | 0.80521 | 1.49E-49 | -1.69E-46 |
| MS.gene053167 | MS.gene26426 | 0.81972 | 1.00E-52 | -1.69E-46 |
| MS.gene053381 | MS.gene26426 | 0.870738 | 1.16E-66 | -1.69E-46 |
| MS.gene05380 | MS.gene26426 | 0.811442 | 6.99E-51 | -1.69E-46 |
| MS.gene053895 | MS.gene26426 | -0.825045 | 5.81E-54 | -1.69E-46 |
| MS.gene053952 | MS.gene26426 | 0.831371 | 1.73E-55 | -1.69E-46 |
| MS.gene05517 | MS.gene26426 | 0.803573 | 3.27E-49 | -1.69E-46 |
| MS.gene055311 | MS.gene26426 | 0.850335 | 1.81E-60 | -1.69E-46 |
| MS.gene055313 | MS.gene26426 | 0.832673 | 8.27E-56 | -1.69E-46 |
| MS.gene055314 | MS.gene26426 | 0.850351 | 1.80E-60 | -1.69E-46 |
| MS.gene055424 | MS.gene26426 | 0.842271 | 2.86E-58 | -1.69E-46 |
| MS.gene055469 | MS.gene26426 | 0.815339 | 9.72E-52 | -1.69E-46 |
| MS.gene055513 | MS.gene26426 | 0.838466 | 2.83E-57 | -1.69E-46 |
| MS.gene055603 | MS.gene26426 | 0.822553 | 2.23E-53 | -1.69E-46 |
| MS.gene056045 | MS.gene26426 | 0.805547 | 1.27E-49 | -1.69E-46 |
| MS.gene056097 | MS.gene26426 | 0.842155 | 3.07E-58 | -1.69E-46 |
| MS.gene056181 | MS.gene26426 | 0.87122 | 8.07E-67 | -1.69E-46 |
| MS.gene056403 | MS.gene26426 | 0.830085 | 3.58E-55 | -1.69E-46 |
| MS.gene056432 | MS.gene26426 | 0.833633 | 4.77E-56 | -1.69E-46 |
| MS.gene056552 | MS.gene26426 | 0.802997 | 4.30E-49 | -1.69E-46 |
| MS.gene056580 | MS.gene26426 | 0.813126 | 3.00E-51 | -1.69E-46 |
| MS.gene056605 | MS.gene26426 | 0.82488 | 6.35E-54 | -1.69E-46 |
| MS.gene056752 | MS.gene26426 | 0.814973 | 1.17E-51 | -1.69E-46 |
| MS.gene056764 | MS.gene26426 | 0.805351 | 1.39E-49 | -1.69E-46 |
| MS.gene056787 | MS.gene26426 | 0.836501 | 9.02E-57 | -1.69E-46 |
| MS.gene056986 | MS.gene26426 | 0.809181 | 2.15E-50 | -1.69E-46 |
| MS.gene056992 | MS.gene26426 | 0.813668 | 2.28E-51 | -1.69E-46 |
| MS.gene057057 | MS.gene26426 | 0.84424 | 8.54E-59 | -1.69E-46 |
| MS.gene057094 | MS.gene26426 | 0.86848 | 6.33E-66 | -1.69E-46 |
| MS.gene057140 | MS.gene26426 | 0.803165 | 3.97E-49 | -1.69E-46 |
| MS.gene057234 | MS.gene26426 | 0.845977 | 2.90E-59 | -1.69E-46 |
| MS.gene057360 | MS.gene26426 | 0.826845 | 2.17E-54 | -1.69E-46 |
| MS.gene05781 | MS.gene26426 | 0.822444 | 2.36E-53 | -1.69E-46 |
| MS.gene057890 | MS.gene26426 | -0.810209 | 1.29E-50 | -1.69E-46 |
| MS.gene057999 | MS.gene26426 | 0.82538 | 4.84E-54 | -1.69E-46 |
| MS.gene058054 | MS.gene26426 | 0.829441 | 5.14E-55 | -1.69E-46 |
| MS.gene058055 | MS.gene26426 | 0.834577 | 2.77E-56 | -1.69E-46 |
| MS.gene058074 | MS.gene26426 | 0.801838 | 7.45E-49 | -1.69E-46 |
| MS.gene058238 | MS.gene26426 | 0.806627 | 7.50E-50 | -1.69E-46 |
| MS.gene058261 | MS.gene26426 | 0.801164 | 1.02E-48 | -1.69E-46 |
| MS.gene058292 | MS.gene26426 | 0.822493 | 2.30E-53 | -1.69E-46 |
| MS.gene058438 | MS.gene26426 | 0.821892 | 3.17E-53 | -1.69E-46 |
| MS.gene058638 | MS.gene26426 | 0.851219 | 1.02E-60 | -1.69E-46 |
| MS.gene058639 | MS.gene26426 | 0.861492 | 9.87E-64 | -1.69E-46 |
| MS.gene058646 | MS.gene26426 | 0.808673 | 2.76E-50 | -1.69E-46 |
| MS.gene058654 | MS.gene26426 | 0.820074 | 8.31E-53 | -1.69E-46 |
| MS.gene058758 | MS.gene26426 | 0.855628 | 5.55E-62 | -1.69E-46 |
| MS.gene05880 | MS.gene26426 | 0.822731 | 2.02E-53 | -1.69E-46 |
| MS.gene058906 | MS.gene26426 | 0.808431 | 3.11E-50 | -1.69E-46 |
| MS.gene059018 | MS.gene26426 | 0.801414 | 9.11E-49 | -1.69E-46 |
| MS.gene059146 | MS.gene26426 | 0.824304 | 8.68E-54 | -1.69E-46 |
| MS.gene059171 | MS.gene26426 | 0.845975 | 2.90E-59 | -1.69E-46 |
| MS.gene059725 | MS.gene26426 | 0.810812 | 9.57E-51 | -1.69E-46 |
| MS.gene05978 | MS.gene26426 | 0.835302 | 1.82E-56 | -1.69E-46 |
| MS.gene06001 | MS.gene26426 | 0.822105 | 2.83E-53 | -1.69E-46 |
| MS.gene06010 | MS.gene26426 | 0.831984 | 1.22E-55 | -1.69E-46 |
| MS.gene06011 | MS.gene26426 | 0.854963 | 8.67E-62 | -1.69E-46 |
| MS.gene060296 | MS.gene26426 | 0.807987 | 3.86E-50 | -1.69E-46 |
| MS.gene060463 | MS.gene26426 | 0.830497 | 2.84E-55 | -1.69E-46 |
| MS.gene060465 | MS.gene26426 | 0.839312 | 1.71E-57 | -1.69E-46 |
| MS.gene060563 | MS.gene26426 | 0.807981 | 3.88E-50 | -1.69E-46 |
| MS.gene060763 | MS.gene26426 | 0.855247 | 7.17E-62 | -1.69E-46 |
| MS.gene060869 | MS.gene26426 | 0.813983 | 1.94E-51 | -1.69E-46 |
| MS.gene060870 | MS.gene26426 | 0.816807 | 4.57E-52 | -1.69E-46 |
| MS.gene060910 | MS.gene26426 | 0.80497 | 1.67E-49 | -1.69E-46 |
| MS.gene060933 | MS.gene26426 | 0.80168 | 8.03E-49 | -1.69E-46 |
| MS.gene061006 | MS.gene26426 | 0.841658 | 4.16E-58 | -1.69E-46 |
| MS.gene061055 | MS.gene26426 | 0.808061 | 3.73E-50 | -1.69E-46 |
| MS.gene061100 | MS.gene26426 | 0.810104 | 1.36E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene47554 | MS.gene26426 | PPI |
| MS.gene39554 | MS.gene26426 | PPI |
| MS.gene26605 | MS.gene26426 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene26426.t1 | MTR_4g087935 | 98.069 | 518 | 4 | 1 | 1 | 512 | 1 | 518 | 0.0 | 1045 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene26426.t1 | AT2G34040 | 68.811 | 513 | 153 | 3 | 1 | 512 | 1 | 507 | 0.0 | 717 |
| MS.gene26426.t1 | AT2G34040 | 68.811 | 513 | 153 | 3 | 1 | 512 | 1 | 507 | 0.0 | 717 |
| MS.gene26426.t1 | AT1G29030 | 67.118 | 517 | 153 | 6 | 1 | 512 | 1 | 505 | 0.0 | 703 |
| MS.gene26426.t1 | AT1G29030 | 64.410 | 517 | 145 | 6 | 1 | 512 | 1 | 483 | 0.0 | 663 |
| MS.gene26426.t1 | AT2G34040 | 69.266 | 436 | 128 | 2 | 1 | 436 | 1 | 430 | 0.0 | 617 |
| MS.gene26426.t1 | AT3G19515 | 45.455 | 253 | 133 | 3 | 240 | 487 | 79 | 331 | 5.97e-59 | 209 |
| MS.gene26426.t1 | AT3G19515 | 47.368 | 133 | 68 | 1 | 12 | 142 | 1 | 133 | 3.89e-31 | 128 |
| MS.gene26426.t1 | AT1G23935 | 35.680 | 412 | 189 | 12 | 87 | 487 | 24 | 370 | 1.01e-55 | 202 |
| MS.gene26426.t1 | AT1G23935 | 35.484 | 341 | 157 | 10 | 87 | 424 | 24 | 304 | 7.86e-44 | 167 |
| MS.gene26426.t1 | AT1G23935 | 35.484 | 341 | 157 | 10 | 87 | 424 | 24 | 304 | 8.16e-44 | 167 |
Find 94 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTGAAGAGTTTGAGCCTATT+TGG | 0.180255 | 4.4:+24864533 | MS.gene26426:CDS |
| TATAGAATTTCGAATGTTTA+TGG | 0.180281 | 4.4:+24864505 | MS.gene26426:CDS |
| AAGTTCTTTCCTGAACTTTC+CGG | 0.262685 | 4.4:+24862451 | MS.gene26426:CDS |
| ATAAGAGAATCAACCTTTCT+TGG | 0.268861 | 4.4:+24868877 | MS.gene26426:CDS |
| TGTGGTTACAAAATTGTTAC+TGG | 0.293298 | 4.4:+24867525 | MS.gene26426:CDS |
| GTGTCGTTCCATTTCCTCTT+GGG | 0.311853 | 4.4:-24864332 | None:intergenic |
| ACTCAATACTCATCTTGATT+TGG | 0.327382 | 4.4:+24862480 | MS.gene26426:CDS |
| TGTTATTCCTGCCAGCTTCC+TGG | 0.336157 | 4.4:+24865595 | MS.gene26426:intron |
| CTTCTTCAATGCAATATTGT+TGG | 0.340511 | 4.4:-24869173 | None:intergenic |
| CAAATAGGCTCAAACTCTTC+AGG | 0.344533 | 4.4:-24864532 | None:intergenic |
| TTTGTAACCACATAAACTAT+TGG | 0.362776 | 4.4:-24867514 | None:intergenic |
| GGCTGAAAACAACAAATCTA+TGG | 0.365544 | 4.4:+24868493 | MS.gene26426:CDS |
| CAGAGTTTAGAAGATGTAAC+TGG | 0.369726 | 4.4:+24864482 | MS.gene26426:intron |
| CATCGTCAAAATATTATTGC+AGG | 0.371200 | 4.4:-24868683 | None:intergenic |
| AAAGTACTTACCACAACAAT+TGG | 0.378420 | 4.4:-24864889 | None:intergenic |
| ATCGAGAAGCTCTACCAATA+TGG | 0.380527 | 4.4:+24862221 | MS.gene26426:CDS |
| TGTGTCGTTCCATTTCCTCT+TGG | 0.385006 | 4.4:-24864333 | None:intergenic |
| TTCAACAGTTCAGCTTTGAT+AGG | 0.395370 | 4.4:-24864307 | None:intergenic |
| TTTAACCTGAGATTTGTCTT+TGG | 0.398392 | 4.4:-24862261 | None:intergenic |
| AAGGATACACCTGAGAATAT+TGG | 0.399203 | 4.4:+24862703 | MS.gene26426:CDS |
| GTTGAAGCCCCAAGAGGAAA+TGG | 0.404679 | 4.4:+24864324 | MS.gene26426:CDS |
| AGTTGAGTTGCTCGCCATAT+TGG | 0.407050 | 4.4:-24862235 | None:intergenic |
| TCTTGTGCAACTTCTTTCCT+CGG | 0.408538 | 4.4:+24862741 | MS.gene26426:CDS |
| TTCAGCAACTGAACAATAGA+AGG | 0.408687 | 4.4:-24865697 | None:intergenic |
| CTCGATGTAAGCAGCTTCTT+CGG | 0.414250 | 4.4:-24862204 | None:intergenic |
| AATATTGTTGGATCCATTGC+CGG | 0.421230 | 4.4:-24869161 | None:intergenic |
| AGTGCAACACCGGAAAGTTC+AGG | 0.424950 | 4.4:-24862460 | None:intergenic |
| TCGGAAGGTTCAGTAGTCAT+TGG | 0.427839 | 4.4:-24862185 | None:intergenic |
| TGTAAAATTCATCTCTTCTC+CGG | 0.428906 | 4.4:-24867348 | None:intergenic |
| TGCGGTAGTTGATGCAGATT+TGG | 0.429378 | 4.4:-24868910 | None:intergenic |
| CATAAACTATTGGTGGCATT+AGG | 0.430397 | 4.4:-24867504 | None:intergenic |
| TTTGAGCCTATTTGGAGAAA+AGG | 0.433300 | 4.4:+24864541 | MS.gene26426:CDS |
| TACATGACTTGGAAGAAAAC+CGG | 0.437540 | 4.4:+24867329 | MS.gene26426:CDS |
| GATCCATTGCCGGTAGTAGC+TGG | 0.447874 | 4.4:-24869151 | None:intergenic |
| TGGTTGCTTCTTTCCAAGAA+AGG | 0.448903 | 4.4:-24868890 | None:intergenic |
| TTACTGGTCAGCCATCTGAT+AGG | 0.452743 | 4.4:+24867541 | MS.gene26426:CDS |
| TGCTAAAACTGATGAAGAAA+AGG | 0.453582 | 4.4:+24868520 | MS.gene26426:CDS |
| CAACAATATTGCATTGAAGA+AGG | 0.456268 | 4.4:+24869174 | MS.gene26426:CDS |
| GGAAAGAACTTGAAGAACTT+AGG | 0.456756 | 4.4:-24862439 | None:intergenic |
| ATTTCATCACCTAGCTCAAA+AGG | 0.458193 | 4.4:+24867394 | MS.gene26426:CDS |
| TACTCATCTTGATTTGGTTG+AGG | 0.467134 | 4.4:+24862486 | MS.gene26426:CDS |
| TCTGATGTCTCTGCTGAGGC+AGG | 0.468867 | 4.4:+24862887 | MS.gene26426:CDS |
| AATGCCACCAATAGTTTATG+TGG | 0.470729 | 4.4:+24867507 | MS.gene26426:CDS |
| TAATGTTGAAGAGCAAAATT+CGG | 0.475477 | 4.4:+24864152 | MS.gene26426:CDS |
| CAACTACCGCACCAGCTGTT+GGG | 0.480221 | 4.4:+24868922 | MS.gene26426:CDS |
| ATCAAACAGATCATATTCAT+AGG | 0.483162 | 4.4:+24864839 | MS.gene26426:CDS |
| AGCTCTTCCATACGCTCAGC+TGG | 0.487308 | 4.4:-24864566 | None:intergenic |
| TAGTTTCTTGATTGTAGCCC+GGG | 0.492094 | 4.4:-24868459 | None:intergenic |
| CTTGTGCAACTTCTTTCCTC+GGG | 0.493032 | 4.4:+24862742 | MS.gene26426:CDS |
| GGATGACCTTAGTCGTGAAA+AGG | 0.497612 | 4.4:+24864173 | MS.gene26426:CDS |
| GTTCGGGTGCAAGCGATAAG+AGG | 0.497959 | 4.4:+24862664 | MS.gene26426:CDS |
| TGGTTGAGGCTGATGAACTC+GGG | 0.499099 | 4.4:+24862500 | MS.gene26426:CDS |
| TTCTATTGTTCAGTTGCTGA+AGG | 0.506926 | 4.4:+24865699 | MS.gene26426:CDS |
| GTAACCACATAAACTATTGG+TGG | 0.507469 | 4.4:-24867511 | None:intergenic |
| ACTTTGTTTAAGCACATTCG+TGG | 0.507835 | 4.4:+24864129 | MS.gene26426:CDS |
| GAGCTGCTTGGAATCATTGA+AGG | 0.510702 | 4.4:+24864584 | MS.gene26426:CDS |
| TCAACTACCGCACCAGCTGT+TGG | 0.511656 | 4.4:+24868921 | MS.gene26426:CDS |
| TTGGTTGAGGCTGATGAACT+CGG | 0.515860 | 4.4:+24862499 | MS.gene26426:CDS |
| TTAGTTTCTTGATTGTAGCC+CGG | 0.527233 | 4.4:-24868460 | None:intergenic |
| TGTCGTTCCATTTCCTCTTG+GGG | 0.527654 | 4.4:-24864331 | None:intergenic |
| AAAGGCTCCAGCTGAGCGTA+TGG | 0.527823 | 4.4:+24864559 | MS.gene26426:CDS |
| CTCTTATCTCCAATAAAAGA+AGG | 0.529752 | 4.4:-24868861 | None:intergenic |
| GAGCGTATGGAAGAGCTGCT+TGG | 0.531459 | 4.4:+24864572 | MS.gene26426:CDS |
| TTTACTTCTGCAGAGCGAAA+CGG | 0.533826 | 4.4:+24869128 | MS.gene26426:intron |
| CAAGAAACTAACTCAAGGAA+TGG | 0.535136 | 4.4:+24868472 | MS.gene26426:CDS |
| AACAATATTGCATTGAAGAA+GGG | 0.536121 | 4.4:+24869175 | MS.gene26426:CDS |
| TCAACAGTTCAGCTTTGATA+GGG | 0.540300 | 4.4:-24864306 | None:intergenic |
| GGTCAGCCATCTGATAGGCT+TGG | 0.540430 | 4.4:+24867546 | MS.gene26426:CDS |
| CGGCCAGCTACTACCGGCAA+TGG | 0.547073 | 4.4:+24869148 | MS.gene26426:CDS |
| CATGGCACTTCCAATTGTTG+TGG | 0.547852 | 4.4:+24864879 | MS.gene26426:CDS |
| CTCTTCCAAAGACAAATCTC+AGG | 0.550702 | 4.4:+24862256 | MS.gene26426:CDS |
| CAGAACGTCAAGGATTATCA+AGG | 0.554085 | 4.4:+24862358 | MS.gene26426:intron |
| AAAATACAATACCCAACAGC+TGG | 0.554529 | 4.4:-24868933 | None:intergenic |
| GGTGTATCCTTGCAGAAAAG+AGG | 0.555555 | 4.4:-24862691 | None:intergenic |
| GCGAAACGGCCAGCTACTAC+CGG | 0.564093 | 4.4:+24869142 | MS.gene26426:CDS |
| GGAGCGTGATGCTGTGCATA+AGG | 0.570343 | 4.4:+24862863 | MS.gene26426:CDS |
| ATGTAAGCAGCTTCTTCGGA+AGG | 0.580643 | 4.4:-24862200 | None:intergenic |
| AAAACGTTGAGGAGTTCACC+CGG | 0.582162 | 4.4:+24868441 | MS.gene26426:CDS |
| ATGAGTATTGAGTGCAACAC+CGG | 0.589034 | 4.4:-24862470 | None:intergenic |
| ATTGCATTGAAGAAGGGTCG+AGG | 0.602060 | 4.4:+24869181 | MS.gene26426:CDS |
| GAATCTTGTGGTGTTGTGAA+AGG | 0.604189 | 4.4:-24865661 | None:intergenic |
| ACAATCAAGAAACTAACTCA+AGG | 0.609790 | 4.4:+24868467 | MS.gene26426:CDS |
| CAATTGGAAGTGCCATGTGA+AGG | 0.614103 | 4.4:-24864873 | None:intergenic |
| AAATGAGTAATCACATTGAA+CGG | 0.615862 | 4.4:-24864626 | None:intergenic |
| TGAAAGGTGAAAACTCTGCA+AGG | 0.622969 | 4.4:-24865645 | None:intergenic |
| CTGCTGAGGCAGGATGTGAA+AGG | 0.630646 | 4.4:+24862897 | MS.gene26426:CDS |
| ACAATACCCAACAGCTGGTG+CGG | 0.630788 | 4.4:-24868928 | None:intergenic |
| GTTGATATCATGCCTTCACA+TGG | 0.637100 | 4.4:+24864861 | MS.gene26426:CDS |
| AGGCTCTGATGTCTCTGCTG+AGG | 0.641155 | 4.4:+24862883 | MS.gene26426:CDS |
| TCTTCTCCAAGCCTATCAGA+TGG | 0.644984 | 4.4:-24867552 | None:intergenic |
| AGCATTTGTCGTGAATCTTG+TGG | 0.650972 | 4.4:-24865673 | None:intergenic |
| GGTTGAGGCTGATGAACTCG+GGG | 0.657264 | 4.4:+24862501 | MS.gene26426:CDS |
| TGAACTGTTGAAGCCCCAAG+AGG | 0.674998 | 4.4:+24864318 | MS.gene26426:CDS |
| AAACGTTGAGGAGTTCACCC+GGG | 0.696711 | 4.4:+24868442 | MS.gene26426:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.4 | gene | 24862188 | 24869518 | 24862188 | ID=MS.gene26426 |
| chr4.4 | mRNA | 24862188 | 24869518 | 24862188 | ID=MS.gene26426.t1;Parent=MS.gene26426 |
| chr4.4 | exon | 24862188 | 24862277 | 24862188 | ID=MS.gene26426.t1.exon1;Parent=MS.gene26426.t1 |
| chr4.4 | CDS | 24862188 | 24862277 | 24862188 | ID=cds.MS.gene26426.t1;Parent=MS.gene26426.t1 |
| chr4.4 | exon | 24862361 | 24862522 | 24862361 | ID=MS.gene26426.t1.exon2;Parent=MS.gene26426.t1 |
| chr4.4 | CDS | 24862361 | 24862522 | 24862361 | ID=cds.MS.gene26426.t1;Parent=MS.gene26426.t1 |
| chr4.4 | exon | 24862664 | 24862763 | 24862664 | ID=MS.gene26426.t1.exon3;Parent=MS.gene26426.t1 |
| chr4.4 | CDS | 24862664 | 24862763 | 24862664 | ID=cds.MS.gene26426.t1;Parent=MS.gene26426.t1 |
| chr4.4 | exon | 24862853 | 24862918 | 24862853 | ID=MS.gene26426.t1.exon4;Parent=MS.gene26426.t1 |
| chr4.4 | CDS | 24862853 | 24862918 | 24862853 | ID=cds.MS.gene26426.t1;Parent=MS.gene26426.t1 |
| chr4.4 | exon | 24864118 | 24864218 | 24864118 | ID=MS.gene26426.t1.exon5;Parent=MS.gene26426.t1 |
| chr4.4 | CDS | 24864118 | 24864218 | 24864118 | ID=cds.MS.gene26426.t1;Parent=MS.gene26426.t1 |
| chr4.4 | exon | 24864301 | 24864375 | 24864301 | ID=MS.gene26426.t1.exon6;Parent=MS.gene26426.t1 |
| chr4.4 | CDS | 24864301 | 24864375 | 24864301 | ID=cds.MS.gene26426.t1;Parent=MS.gene26426.t1 |
| chr4.4 | exon | 24864485 | 24864634 | 24864485 | ID=MS.gene26426.t1.exon7;Parent=MS.gene26426.t1 |
| chr4.4 | CDS | 24864485 | 24864634 | 24864485 | ID=cds.MS.gene26426.t1;Parent=MS.gene26426.t1 |
| chr4.4 | exon | 24864826 | 24864900 | 24864826 | ID=MS.gene26426.t1.exon8;Parent=MS.gene26426.t1 |
| chr4.4 | CDS | 24864826 | 24864900 | 24864826 | ID=cds.MS.gene26426.t1;Parent=MS.gene26426.t1 |
| chr4.4 | exon | 24864985 | 24865050 | 24864985 | ID=MS.gene26426.t1.exon9;Parent=MS.gene26426.t1 |
| chr4.4 | CDS | 24864985 | 24865050 | 24864985 | ID=cds.MS.gene26426.t1;Parent=MS.gene26426.t1 |
| chr4.4 | exon | 24865610 | 24865720 | 24865610 | ID=MS.gene26426.t1.exon10;Parent=MS.gene26426.t1 |
| chr4.4 | CDS | 24865610 | 24865720 | 24865610 | ID=cds.MS.gene26426.t1;Parent=MS.gene26426.t1 |
| chr4.4 | exon | 24867326 | 24867415 | 24867326 | ID=MS.gene26426.t1.exon11;Parent=MS.gene26426.t1 |
| chr4.4 | CDS | 24867326 | 24867415 | 24867326 | ID=cds.MS.gene26426.t1;Parent=MS.gene26426.t1 |
| chr4.4 | exon | 24867501 | 24867607 | 24867501 | ID=MS.gene26426.t1.exon12;Parent=MS.gene26426.t1 |
| chr4.4 | CDS | 24867501 | 24867607 | 24867501 | ID=cds.MS.gene26426.t1;Parent=MS.gene26426.t1 |
| chr4.4 | exon | 24868436 | 24868550 | 24868436 | ID=MS.gene26426.t1.exon13;Parent=MS.gene26426.t1 |
| chr4.4 | CDS | 24868436 | 24868550 | 24868436 | ID=cds.MS.gene26426.t1;Parent=MS.gene26426.t1 |
| chr4.4 | exon | 24868646 | 24868711 | 24868646 | ID=MS.gene26426.t1.exon14;Parent=MS.gene26426.t1 |
| chr4.4 | CDS | 24868646 | 24868711 | 24868646 | ID=cds.MS.gene26426.t1;Parent=MS.gene26426.t1 |
| chr4.4 | exon | 24868843 | 24868943 | 24868843 | ID=MS.gene26426.t1.exon15;Parent=MS.gene26426.t1 |
| chr4.4 | CDS | 24868843 | 24868943 | 24868843 | ID=cds.MS.gene26426.t1;Parent=MS.gene26426.t1 |
| chr4.4 | exon | 24869141 | 24869202 | 24869141 | ID=MS.gene26426.t1.exon16;Parent=MS.gene26426.t1 |
| chr4.4 | CDS | 24869141 | 24869202 | 24869141 | ID=cds.MS.gene26426.t1;Parent=MS.gene26426.t1 |
| chr4.4 | exon | 24869478 | 24869518 | 24869478 | ID=MS.gene26426.t1.exon17;Parent=MS.gene26426.t1 |
| chr4.4 | CDS | 24869478 | 24869518 | 24869478 | ID=cds.MS.gene26426.t1;Parent=MS.gene26426.t1 |
| Gene Sequence |
| Protein sequence |
