Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene88091.t1 | XP_003607601.1 | 94.1 | 286 | 5 | 1 | 44 | 317 | 128 | 413 | 1.10E-140 | 509.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene88091.t1 | Q9SJI7 | 55.1 | 296 | 115 | 2 | 35 | 317 | 95 | 385 | 8.3e-86 | 318.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene88091.t1 | G7JCM9 | 94.1 | 286 | 5 | 1 | 44 | 317 | 128 | 413 | 7.6e-141 | 509.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049404 | MS.gene88091 | 0.804269 | 2.34E-49 | -1.69E-46 |
| MS.gene049669 | MS.gene88091 | 0.807589 | 4.69E-50 | -1.69E-46 |
| MS.gene049878 | MS.gene88091 | 0.81214 | 4.92E-51 | -1.69E-46 |
| MS.gene050020 | MS.gene88091 | 0.803933 | 2.75E-49 | -1.69E-46 |
| MS.gene050021 | MS.gene88091 | 0.80061 | 1.33E-48 | -1.69E-46 |
| MS.gene05016 | MS.gene88091 | 0.811547 | 6.63E-51 | -1.69E-46 |
| MS.gene050442 | MS.gene88091 | 0.820094 | 8.22E-53 | -1.69E-46 |
| MS.gene050750 | MS.gene88091 | 0.832473 | 9.26E-56 | -1.69E-46 |
| MS.gene050787 | MS.gene88091 | 0.802557 | 5.30E-49 | -1.69E-46 |
| MS.gene050807 | MS.gene88091 | 0.826904 | 2.10E-54 | -1.69E-46 |
| MS.gene050808 | MS.gene88091 | 0.807448 | 5.03E-50 | -1.69E-46 |
| MS.gene050820 | MS.gene88091 | 0.829231 | 5.78E-55 | -1.69E-46 |
| MS.gene050953 | MS.gene88091 | 0.823699 | 1.20E-53 | -1.69E-46 |
| MS.gene051265 | MS.gene88091 | 0.855631 | 5.54E-62 | -1.69E-46 |
| MS.gene052176 | MS.gene88091 | 0.815937 | 7.15E-52 | -1.69E-46 |
| MS.gene052333 | MS.gene88091 | 0.806088 | 9.75E-50 | -1.69E-46 |
| MS.gene052376 | MS.gene88091 | 0.806338 | 8.63E-50 | -1.69E-46 |
| MS.gene052867 | MS.gene88091 | 0.83587 | 1.30E-56 | -1.69E-46 |
| MS.gene053166 | MS.gene88091 | 0.827533 | 1.48E-54 | -1.69E-46 |
| MS.gene053201 | MS.gene88091 | 0.803034 | 4.23E-49 | -1.69E-46 |
| MS.gene053584 | MS.gene88091 | 0.81331 | 2.73E-51 | -1.69E-46 |
| MS.gene053953 | MS.gene88091 | 0.815485 | 9.02E-52 | -1.69E-46 |
| MS.gene05414 | MS.gene88091 | 0.809766 | 1.61E-50 | -1.69E-46 |
| MS.gene05415 | MS.gene88091 | 0.829122 | 6.14E-55 | -1.69E-46 |
| MS.gene054236 | MS.gene88091 | 0.813309 | 2.73E-51 | -1.69E-46 |
| MS.gene054405 | MS.gene88091 | 0.818742 | 1.67E-52 | -1.69E-46 |
| MS.gene054472 | MS.gene88091 | 0.804107 | 2.53E-49 | -1.69E-46 |
| MS.gene054559 | MS.gene88091 | 0.827984 | 1.16E-54 | -1.69E-46 |
| MS.gene055356 | MS.gene88091 | 0.842519 | 2.46E-58 | -1.69E-46 |
| MS.gene055357 | MS.gene88091 | 0.838977 | 2.09E-57 | -1.69E-46 |
| MS.gene055358 | MS.gene88091 | 0.841642 | 4.20E-58 | -1.69E-46 |
| MS.gene055818 | MS.gene88091 | 0.830028 | 3.70E-55 | -1.69E-46 |
| MS.gene05604 | MS.gene88091 | 0.813769 | 2.16E-51 | -1.69E-46 |
| MS.gene056498 | MS.gene88091 | 0.808092 | 3.67E-50 | -1.69E-46 |
| MS.gene056506 | MS.gene88091 | 0.807649 | 4.56E-50 | -1.69E-46 |
| MS.gene057021 | MS.gene88091 | 0.803293 | 3.74E-49 | -1.69E-46 |
| MS.gene057027 | MS.gene88091 | 0.807886 | 4.06E-50 | -1.69E-46 |
| MS.gene057060 | MS.gene88091 | 0.837961 | 3.82E-57 | -1.69E-46 |
| MS.gene057414 | MS.gene88091 | 0.810842 | 9.43E-51 | -1.69E-46 |
| MS.gene057639 | MS.gene88091 | 0.815063 | 1.12E-51 | -1.69E-46 |
| MS.gene057755 | MS.gene88091 | 0.819586 | 1.07E-52 | -1.69E-46 |
| MS.gene057756 | MS.gene88091 | 0.803707 | 3.07E-49 | -1.69E-46 |
| MS.gene058037 | MS.gene88091 | 0.817763 | 2.79E-52 | -1.69E-46 |
| MS.gene058736 | MS.gene88091 | 0.805359 | 1.39E-49 | -1.69E-46 |
| MS.gene059128 | MS.gene88091 | 0.809578 | 1.77E-50 | -1.69E-46 |
| MS.gene059272 | MS.gene88091 | 0.819481 | 1.14E-52 | -1.69E-46 |
| MS.gene059382 | MS.gene88091 | 0.812921 | 3.32E-51 | -1.69E-46 |
| MS.gene05954 | MS.gene88091 | 0.807208 | 5.66E-50 | -1.69E-46 |
| MS.gene059584 | MS.gene88091 | 0.837594 | 4.74E-57 | -1.69E-46 |
| MS.gene060137 | MS.gene88091 | -0.820402 | 6.99E-53 | -1.69E-46 |
| MS.gene060167 | MS.gene88091 | 0.809111 | 2.22E-50 | -1.69E-46 |
| MS.gene060312 | MS.gene88091 | 0.810005 | 1.43E-50 | -1.69E-46 |
| MS.gene060322 | MS.gene88091 | 0.828634 | 8.06E-55 | -1.69E-46 |
| MS.gene060521 | MS.gene88091 | 0.808363 | 3.21E-50 | -1.69E-46 |
| MS.gene060553 | MS.gene88091 | 0.821347 | 4.24E-53 | -1.69E-46 |
| MS.gene060572 | MS.gene88091 | 0.80996 | 1.46E-50 | -1.69E-46 |
| MS.gene060918 | MS.gene88091 | 0.813359 | 2.66E-51 | -1.69E-46 |
| MS.gene060919 | MS.gene88091 | 0.803366 | 3.61E-49 | -1.69E-46 |
| MS.gene061040 | MS.gene88091 | -0.816715 | 4.79E-52 | -1.69E-46 |
| MS.gene061114 | MS.gene88091 | -0.824572 | 7.51E-54 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene88091.t1 | MTR_4g080100 | 86.709 | 316 | 29 | 2 | 14 | 317 | 99 | 413 | 0.0 | 547 |
| MS.gene88091.t1 | MTR_2g015690 | 43.197 | 294 | 122 | 4 | 44 | 317 | 122 | 390 | 1.13e-72 | 230 |
| MS.gene88091.t1 | MTR_4g087830 | 36.735 | 294 | 135 | 5 | 44 | 317 | 107 | 369 | 3.62e-53 | 179 |
| MS.gene88091.t1 | MTR_4g087810 | 36.486 | 296 | 133 | 6 | 44 | 317 | 116 | 378 | 1.79e-51 | 175 |
| MS.gene88091.t1 | MTR_7g096120 | 33.010 | 309 | 143 | 5 | 45 | 315 | 174 | 456 | 4.42e-48 | 168 |
| MS.gene88091.t1 | MTR_7g096140 | 32.143 | 308 | 147 | 5 | 45 | 315 | 174 | 456 | 2.08e-47 | 166 |
| MS.gene88091.t1 | MTR_4g077070 | 32.087 | 321 | 147 | 8 | 37 | 315 | 188 | 479 | 3.23e-43 | 156 |
| MS.gene88091.t1 | MTR_5g013230 | 29.795 | 292 | 136 | 8 | 47 | 296 | 231 | 495 | 1.84e-31 | 124 |
| MS.gene88091.t1 | MTR_7g006400 | 32.584 | 267 | 106 | 10 | 51 | 277 | 199 | 431 | 1.16e-27 | 112 |
| MS.gene88091.t1 | MTR_4g099510 | 30.796 | 289 | 128 | 7 | 47 | 296 | 225 | 480 | 9.25e-27 | 110 |
| MS.gene88091.t1 | MTR_7g081645 | 31.985 | 272 | 136 | 10 | 48 | 295 | 175 | 421 | 6.21e-26 | 107 |
| MS.gene88091.t1 | MTR_7g081620 | 29.703 | 303 | 139 | 9 | 48 | 297 | 169 | 450 | 1.07e-25 | 106 |
| MS.gene88091.t1 | MTR_1995s0010 | 29.150 | 247 | 113 | 4 | 68 | 277 | 1 | 222 | 1.30e-23 | 97.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene88091.t1 | AT2G42690 | 54.459 | 314 | 118 | 4 | 21 | 318 | 82 | 386 | 1.38e-111 | 330 |
| MS.gene88091.t1 | AT4G18550 | 39.016 | 305 | 137 | 6 | 35 | 317 | 113 | 390 | 7.00e-63 | 205 |
| MS.gene88091.t1 | AT4G18550 | 39.016 | 305 | 137 | 6 | 35 | 317 | 130 | 407 | 8.87e-63 | 205 |
| MS.gene88091.t1 | AT1G06250 | 37.716 | 289 | 134 | 4 | 48 | 315 | 111 | 374 | 1.73e-56 | 189 |
| MS.gene88091.t1 | AT1G06250 | 37.544 | 285 | 132 | 4 | 52 | 315 | 1 | 260 | 4.77e-55 | 182 |
| MS.gene88091.t1 | AT2G30550 | 33.439 | 314 | 137 | 8 | 45 | 315 | 200 | 484 | 1.35e-45 | 162 |
| MS.gene88091.t1 | AT1G51440 | 34.069 | 317 | 134 | 9 | 45 | 315 | 187 | 474 | 5.15e-44 | 158 |
| MS.gene88091.t1 | AT1G06800 | 34.286 | 315 | 134 | 10 | 45 | 315 | 184 | 469 | 5.17e-42 | 152 |
| MS.gene88091.t1 | AT1G30370 | 29.934 | 304 | 156 | 6 | 44 | 316 | 212 | 489 | 4.51e-37 | 139 |
| MS.gene88091.t1 | AT2G30550 | 32.616 | 279 | 116 | 8 | 45 | 280 | 200 | 449 | 2.59e-36 | 136 |
| MS.gene88091.t1 | AT1G06800 | 33.692 | 279 | 112 | 10 | 45 | 279 | 184 | 433 | 3.34e-33 | 127 |
| MS.gene88091.t1 | AT4G18550 | 34.928 | 209 | 91 | 4 | 35 | 223 | 130 | 313 | 3.96e-33 | 124 |
| MS.gene88091.t1 | AT2G31690 | 30.970 | 268 | 117 | 8 | 46 | 277 | 185 | 420 | 1.91e-28 | 114 |
| MS.gene88091.t1 | AT1G05800 | 31.321 | 265 | 114 | 6 | 49 | 277 | 177 | 409 | 2.18e-26 | 108 |
| MS.gene88091.t1 | AT4G16820 | 28.374 | 289 | 140 | 8 | 47 | 295 | 217 | 478 | 2.47e-26 | 109 |
| MS.gene88091.t1 | AT2G44810 | 30.000 | 290 | 131 | 10 | 48 | 295 | 96 | 355 | 2.73e-22 | 96.3 |
| MS.gene88091.t1 | AT2G44810 | 30.000 | 290 | 131 | 10 | 48 | 295 | 186 | 445 | 8.71e-22 | 95.5 |
Find 82 sgRNAs with CRISPR-Local
Find 94 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TACCCTTATTATTGTTGTTT+GGG | 0.238162 | 4.3:-68625621 | None:intergenic |
| CCTCCCAAACAACAATAATA+AGG | 0.244272 | 4.3:+68625618 | MS.gene88091:CDS |
| CATTATCCAGGGAAGTTATT+GGG | 0.257904 | 4.3:+68626343 | MS.gene88091:CDS |
| CCGTTTACTGCATTTGTGTT+TGG | 0.278706 | 4.3:+68626223 | MS.gene88091:CDS |
| ACCAACCCTTCATTACTTTA+GGG | 0.280032 | 4.3:-68625999 | None:intergenic |
| GTACCCTTATTATTGTTGTT+TGG | 0.286185 | 4.3:-68625622 | None:intergenic |
| CGTTTACTGCATTTGTGTTT+GGG | 0.289332 | 4.3:+68626224 | MS.gene88091:CDS |
| ACATTATCCAGGGAAGTTAT+TGG | 0.290351 | 4.3:+68626342 | MS.gene88091:CDS |
| AACCAACCCTTCATTACTTT+AGG | 0.305402 | 4.3:-68626000 | None:intergenic |
| GCTGCTCCTGAATCTGCTTC+TGG | 0.315313 | 4.3:+68625562 | MS.gene88091:CDS |
| GGAATAAAGCTTTCAATGAT+AGG | 0.357385 | 4.3:+68626260 | MS.gene88091:CDS |
| CTGGTTGGAATGGGAGTGAT+GGG | 0.360921 | 4.3:+68626479 | MS.gene88091:CDS |
| GGTGAAGGTGAAGAGGAGTT+TGG | 0.362136 | 4.3:+68626510 | MS.gene88091:CDS |
| AAGCTTTATTCCCAACTTGC+GGG | 0.376152 | 4.3:-68626249 | None:intergenic |
| GTTGGGACCGTGAGTCTAAC+TGG | 0.380761 | 4.3:+68625425 | MS.gene88091:CDS |
| GCTGGTTGGAATGGGAGTGA+TGG | 0.408221 | 4.3:+68626478 | MS.gene88091:CDS |
| TGGGAGTGATGGGGAGTTTG+AGG | 0.408734 | 4.3:+68626489 | MS.gene88091:CDS |
| CCAAACACAAATGCAGTAAA+CGG | 0.418769 | 4.3:-68626223 | None:intergenic |
| TGTTTGGGTCCCCGCAAGTT+GGG | 0.424638 | 4.3:+68626239 | MS.gene88091:CDS |
| CATATTGTGGCTGGTTGGAA+TGG | 0.429515 | 4.3:+68626469 | MS.gene88091:CDS |
| CATGACTTTGTTGAAGAATG+AGG | 0.431066 | 4.3:-68625304 | None:intergenic |
| TAAGTCTTGTGATTACTTGA+AGG | 0.431881 | 4.3:+68626543 | MS.gene88091:CDS |
| AATCCAAGTGTGGTATTAGT+AGG | 0.433511 | 4.3:+68626129 | MS.gene88091:CDS |
| CTCCCAAACAACAATAATAA+GGG | 0.439311 | 4.3:+68625619 | MS.gene88091:CDS |
| AACAAACCAGAAGCAGATTC+AGG | 0.440065 | 4.3:-68625568 | None:intergenic |
| GATCTTATACCACATTATCC+AGG | 0.444039 | 4.3:+68626331 | MS.gene88091:CDS |
| GAGTGAAGAATAAAAGCTTC+AGG | 0.445100 | 4.3:-68625390 | None:intergenic |
| TGCCGGCGTCATGGTGGGTT+AGG | 0.457831 | 4.3:+68626578 | MS.gene88091:CDS |
| CTTGAATGGATTAACGTGTT+TGG | 0.465861 | 4.3:+68625538 | MS.gene88091:CDS |
| GTGGGTTAGGTATGGTGCGT+AGG | 0.467712 | 4.3:+68626591 | MS.gene88091:CDS |
| GTACTACAAGGGACCTTGAA+TGG | 0.467880 | 4.3:+68625524 | MS.gene88091:CDS |
| ATTCGAAGAATCCTAGTGAT+TGG | 0.468076 | 4.3:+68626425 | MS.gene88091:CDS |
| GAGAGTCCCTAAAGTAATGA+AGG | 0.471259 | 4.3:+68625993 | MS.gene88091:CDS |
| CACTCACTATCACGTGAGTT+GGG | 0.482287 | 4.3:+68625408 | MS.gene88091:CDS |
| CCTTATTATTGTTGTTTGGG+AGG | 0.489521 | 4.3:-68625618 | None:intergenic |
| GTGTTTGGGTCCCCGCAAGT+TGG | 0.489564 | 4.3:+68626238 | MS.gene88091:CDS |
| TTATTGGGGTATGAGTATAC+AGG | 0.493548 | 4.3:+68626358 | MS.gene88091:CDS |
| AGTGTCACGTGCCGGCGTCA+TGG | 0.494975 | 4.3:+68626569 | MS.gene88091:CDS |
| CAAACACAAATGCAGTAAAC+GGG | 0.496631 | 4.3:-68626222 | None:intergenic |
| AGTTTGAGGTGAAGGTGAAG+AGG | 0.496715 | 4.3:+68626503 | MS.gene88091:CDS |
| CAAACACGTTAATCCATTCA+AGG | 0.503129 | 4.3:-68625537 | None:intergenic |
| TCCCTAAAGTAATGAAGGGT+TGG | 0.507752 | 4.3:+68625998 | MS.gene88091:CDS |
| GCGTCATGGTGGGTTAGGTA+TGG | 0.509549 | 4.3:+68626583 | MS.gene88091:CDS |
| TGATGGGGAGTTTGAGGTGA+AGG | 0.510458 | 4.3:+68626495 | MS.gene88091:CDS |
| AAACAACAGTGTAGTGTGTA+GGG | 0.515742 | 4.3:-68625335 | None:intergenic |
| CGATGAACGGAGTAGAGAGT+TGG | 0.517745 | 4.3:+68625471 | MS.gene88091:CDS |
| ATATTGTGGCTGGTTGGAAT+GGG | 0.519997 | 4.3:+68626470 | MS.gene88091:CDS |
| TCACTCACTATCACGTGAGT+TGG | 0.520669 | 4.3:+68625407 | MS.gene88091:CDS |
| GCAAGCTATGTTGCATATTG+TGG | 0.523056 | 4.3:+68626456 | MS.gene88091:CDS |
| CAACTCTCTACTCCGTTCAT+CGG | 0.527868 | 4.3:-68625470 | None:intergenic |
| GACCGTGAGTCTAACTGGAT+TGG | 0.532608 | 4.3:+68625430 | MS.gene88091:CDS |
| GCTATGTTGCATATTGTGGC+TGG | 0.532700 | 4.3:+68626460 | MS.gene88091:CDS |
| TCATACCCCAATAACTTCCC+TGG | 0.532892 | 4.3:-68626349 | None:intergenic |
| GTCACGTGCCGGCGTCATGG+TGG | 0.539164 | 4.3:+68626572 | MS.gene88091:CDS |
| GAAACAACAGTGTAGTGTGT+AGG | 0.540411 | 4.3:-68625336 | None:intergenic |
| TCACGTGCCGGCGTCATGGT+GGG | 0.541798 | 4.3:+68626573 | MS.gene88091:CDS |
| AAAGCTTTATTCCCAACTTG+CGG | 0.543742 | 4.3:-68626250 | None:intergenic |
| TGTTGCATATTGTGGCTGGT+TGG | 0.546285 | 4.3:+68626464 | MS.gene88091:CDS |
| GATGAACGGAGTAGAGAGTT+GGG | 0.549457 | 4.3:+68625472 | MS.gene88091:CDS |
| TGGGTTAGGTATGGTGCGTA+GGG | 0.550429 | 4.3:+68626592 | MS.gene88091:CDS |
| ATCTTATACCACATTATCCA+GGG | 0.566732 | 4.3:+68626332 | MS.gene88091:CDS |
| ATTATCCAGGGAAGTTATTG+GGG | 0.567947 | 4.3:+68626344 | MS.gene88091:CDS |
| TGTCCTACTAATACCACACT+TGG | 0.573233 | 4.3:-68626132 | None:intergenic |
| AATAACTTCCCTGGATAATG+TGG | 0.577975 | 4.3:-68626340 | None:intergenic |
| AGCTTTATTCCCAACTTGCG+GGG | 0.579031 | 4.3:-68626248 | None:intergenic |
| TCGCTGTTAGTTCCGATGAA+CGG | 0.581063 | 4.3:+68625458 | MS.gene88091:CDS |
| TGGTTGGAATGGGAGTGATG+GGG | 0.584414 | 4.3:+68626480 | MS.gene88091:CDS |
| GAAGGAAGAGTGTCACGTGC+CGG | 0.589437 | 4.3:+68626561 | MS.gene88091:CDS |
| TACCTAACCCACCATGACGC+CGG | 0.590563 | 4.3:-68626580 | None:intergenic |
| TGCAAATTATGCCAATCACT+AGG | 0.595847 | 4.3:-68626436 | None:intergenic |
| TTGTGTGGCGTGGTACTACA+AGG | 0.605960 | 4.3:+68625512 | MS.gene88091:CDS |
| TGAGTATACAGGGACAGAGT+TGG | 0.607194 | 4.3:+68626369 | MS.gene88091:CDS |
| AGAGTCCCTAAAGTAATGAA+GGG | 0.619750 | 4.3:+68625994 | MS.gene88091:CDS |
| CAAGAATGAAAATCCAAGTG+TGG | 0.634400 | 4.3:+68626119 | MS.gene88091:CDS |
| GTATTAGTAGGACATAGTCT+AGG | 0.639227 | 4.3:+68626141 | MS.gene88091:CDS |
| TAGCAGCAGCAGTGACGATG+AGG | 0.641877 | 4.3:+68625963 | MS.gene88091:CDS |
| TATTGGGGTATGAGTATACA+GGG | 0.649833 | 4.3:+68626359 | MS.gene88091:CDS |
| GTCGTGAAATATATGTTGTG+TGG | 0.660451 | 4.3:+68625497 | MS.gene88091:CDS |
| AACCAATCCAGTTAGACTCA+CGG | 0.662669 | 4.3:-68625432 | None:intergenic |
| GAAATATATGTTGTGTGGCG+TGG | 0.672854 | 4.3:+68625502 | MS.gene88091:CDS |
| ATACACGTGCAGTAGCGTAG+AGG | 0.716295 | 4.3:-68625362 | None:intergenic |
| TGTGTGGCGTGGTACTACAA+GGG | 0.775410 | 4.3:+68625513 | MS.gene88091:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | GTAAAATCTAAAAATGAATA+TGG | - | chr4.3:68625689-68625708 | None:intergenic | 15.0% |
| !! | CAAAAAGTTTCAAAATTTGA+AGG | + | chr4.3:68626285-68626304 | MS.gene88091:CDS | 20.0% |
| !! | CGTTACATATACTTTATAAA+TGG | - | chr4.3:68625899-68625918 | None:intergenic | 20.0% |
| !! | TTTTTGTGAAAGGAGATTTT+GGG | - | chr4.3:68626047-68626066 | None:intergenic | 25.0% |
| !!! | TACCCTTATTATTGTTGTTT+GGG | - | chr4.3:68625624-68625643 | None:intergenic | 25.0% |
| AAAACTTATACAAACTCACC+TGG | - | chr4.3:68625733-68625752 | None:intergenic | 30.0% | |
| ATCTTATACCACATTATCCA+GGG | + | chr4.3:68626332-68626351 | MS.gene88091:CDS | 30.0% | |
| CTCCCAAACAACAATAATAA+GGG | + | chr4.3:68625619-68625638 | MS.gene88091:CDS | 30.0% | |
| GGAATAAAGCTTTCAATGAT+AGG | + | chr4.3:68626260-68626279 | MS.gene88091:CDS | 30.0% | |
| ! | AACATACTTAAACTGATTCC+AGG | + | chr4.3:68625712-68625731 | MS.gene88091:intron | 30.0% |
| ! | ATTTGAAGGTTTTACATGTG+AGG | + | chr4.3:68626299-68626318 | MS.gene88091:CDS | 30.0% |
| ! | GTACCCTTATTATTGTTGTT+TGG | - | chr4.3:68625625-68625644 | None:intergenic | 30.0% |
| ! | GTTTTTGTGAAAGGAGATTT+TGG | - | chr4.3:68626048-68626067 | None:intergenic | 30.0% |
| ! | TAAGTCTTGTGATTACTTGA+AGG | + | chr4.3:68626543-68626562 | MS.gene88091:CDS | 30.0% |
| AAACAACAGTGTAGTGTGTA+GGG | - | chr4.3:68625338-68625357 | None:intergenic | 35.0% | |
| AACCAACCCTTCATTACTTT+AGG | - | chr4.3:68626003-68626022 | None:intergenic | 35.0% | |
| AATAACTTCCCTGGATAATG+TGG | - | chr4.3:68626343-68626362 | None:intergenic | 35.0% | |
| AATCCAAGTGTGGTATTAGT+AGG | + | chr4.3:68626129-68626148 | MS.gene88091:CDS | 35.0% | |
| AATTGTGAGTGCGTTTGATT+TGG | + | chr4.3:68626176-68626195 | MS.gene88091:intron | 35.0% | |
| ACATTATCCAGGGAAGTTAT+TGG | + | chr4.3:68626342-68626361 | MS.gene88091:CDS | 35.0% | |
| ACCAACCCTTCATTACTTTA+GGG | - | chr4.3:68626002-68626021 | None:intergenic | 35.0% | |
| AGAGTCCCTAAAGTAATGAA+GGG | + | chr4.3:68625994-68626013 | MS.gene88091:CDS | 35.0% | |
| ATTATCCAGGGAAGTTATTG+GGG | + | chr4.3:68626344-68626363 | MS.gene88091:CDS | 35.0% | |
| ATTCGAAGAATCCTAGTGAT+TGG | + | chr4.3:68626425-68626444 | MS.gene88091:CDS | 35.0% | |
| CAAACACAAATGCAGTAAAC+GGG | - | chr4.3:68626225-68626244 | None:intergenic | 35.0% | |
| CAAACACGTTAATCCATTCA+AGG | - | chr4.3:68625540-68625559 | None:intergenic | 35.0% | |
| CAAGAATGAAAATCCAAGTG+TGG | + | chr4.3:68626119-68626138 | MS.gene88091:CDS | 35.0% | |
| CATGACTTTGTTGAAGAATG+AGG | - | chr4.3:68625307-68625326 | None:intergenic | 35.0% | |
| CATTATCCAGGGAAGTTATT+GGG | + | chr4.3:68626343-68626362 | MS.gene88091:CDS | 35.0% | |
| CCAAACACAAATGCAGTAAA+CGG | - | chr4.3:68626226-68626245 | None:intergenic | 35.0% | |
| CCTCCCAAACAACAATAATA+AGG | + | chr4.3:68625618-68625637 | MS.gene88091:CDS | 35.0% | |
| CGTTTACTGCATTTGTGTTT+GGG | + | chr4.3:68626224-68626243 | MS.gene88091:CDS | 35.0% | |
| GAGTGAAGAATAAAAGCTTC+AGG | - | chr4.3:68625393-68625412 | None:intergenic | 35.0% | |
| GATCTTATACCACATTATCC+AGG | + | chr4.3:68626331-68626350 | MS.gene88091:CDS | 35.0% | |
| GTATTAGTAGGACATAGTCT+AGG | + | chr4.3:68626141-68626160 | MS.gene88091:CDS | 35.0% | |
| GTCGTGAAATATATGTTGTG+TGG | + | chr4.3:68625497-68625516 | MS.gene88091:CDS | 35.0% | |
| TATTGGGGTATGAGTATACA+GGG | + | chr4.3:68626359-68626378 | MS.gene88091:CDS | 35.0% | |
| TGCAAATTATGCCAATCACT+AGG | - | chr4.3:68626439-68626458 | None:intergenic | 35.0% | |
| TTATTGGGGTATGAGTATAC+AGG | + | chr4.3:68626358-68626377 | MS.gene88091:CDS | 35.0% | |
| !! | AAAGCTTTATTCCCAACTTG+CGG | - | chr4.3:68626253-68626272 | None:intergenic | 35.0% |
| !! | CCTTATTATTGTTGTTTGGG+AGG | - | chr4.3:68625621-68625640 | None:intergenic | 35.0% |
| !! | CTTGAATGGATTAACGTGTT+TGG | + | chr4.3:68625538-68625557 | MS.gene88091:CDS | 35.0% |
| AAAAACAAGCGTGAGAACAC+AGG | + | chr4.3:68626062-68626081 | MS.gene88091:CDS | 40.0% | |
| AACAAACCAGAAGCAGATTC+AGG | - | chr4.3:68625571-68625590 | None:intergenic | 40.0% | |
| AACCAATCCAGTTAGACTCA+CGG | - | chr4.3:68625435-68625454 | None:intergenic | 40.0% | |
| CCGTTTACTGCATTTGTGTT+TGG | + | chr4.3:68626223-68626242 | MS.gene88091:CDS | 40.0% | |
| GAAACAACAGTGTAGTGTGT+AGG | - | chr4.3:68625339-68625358 | None:intergenic | 40.0% | |
| GAAATATATGTTGTGTGGCG+TGG | + | chr4.3:68625502-68625521 | MS.gene88091:CDS | 40.0% | |
| GAGAGTCCCTAAAGTAATGA+AGG | + | chr4.3:68625993-68626012 | MS.gene88091:CDS | 40.0% | |
| GCAAGCTATGTTGCATATTG+TGG | + | chr4.3:68626456-68626475 | MS.gene88091:CDS | 40.0% | |
| TCCCTAAAGTAATGAAGGGT+TGG | + | chr4.3:68625998-68626017 | MS.gene88091:CDS | 40.0% | |
| TGTCCTACTAATACCACACT+TGG | - | chr4.3:68626135-68626154 | None:intergenic | 40.0% | |
| ! | ATATTGTGGCTGGTTGGAAT+GGG | + | chr4.3:68626470-68626489 | MS.gene88091:CDS | 40.0% |
| !! | AAGCTTTATTCCCAACTTGC+GGG | - | chr4.3:68626252-68626271 | None:intergenic | 40.0% |
| !!! | CTCACGCTTGTTTTTGTGAA+AGG | - | chr4.3:68626057-68626076 | None:intergenic | 40.0% |
| CAACTCTCTACTCCGTTCAT+CGG | - | chr4.3:68625473-68625492 | None:intergenic | 45.0% | |
| CACTCACTATCACGTGAGTT+GGG | + | chr4.3:68625408-68625427 | MS.gene88091:CDS | 45.0% | |
| GATGAACGGAGTAGAGAGTT+GGG | + | chr4.3:68625472-68625491 | MS.gene88091:CDS | 45.0% | |
| GCTATGTTGCATATTGTGGC+TGG | + | chr4.3:68626460-68626479 | MS.gene88091:CDS | 45.0% | |
| GTACTACAAGGGACCTTGAA+TGG | + | chr4.3:68625524-68625543 | MS.gene88091:CDS | 45.0% | |
| TCACTCACTATCACGTGAGT+TGG | + | chr4.3:68625407-68625426 | MS.gene88091:CDS | 45.0% | |
| TCATACCCCAATAACTTCCC+TGG | - | chr4.3:68626352-68626371 | None:intergenic | 45.0% | |
| TCGCTGTTAGTTCCGATGAA+CGG | + | chr4.3:68625458-68625477 | MS.gene88091:CDS | 45.0% | |
| TGAGTATACAGGGACAGAGT+TGG | + | chr4.3:68626369-68626388 | MS.gene88091:CDS | 45.0% | |
| TGTTGCATATTGTGGCTGGT+TGG | + | chr4.3:68626464-68626483 | MS.gene88091:CDS | 45.0% | |
| ! | AGTTTGAGGTGAAGGTGAAG+AGG | + | chr4.3:68626503-68626522 | MS.gene88091:CDS | 45.0% |
| ! | CATATTGTGGCTGGTTGGAA+TGG | + | chr4.3:68626469-68626488 | MS.gene88091:CDS | 45.0% |
| !! | AGCTTTATTCCCAACTTGCG+GGG | - | chr4.3:68626251-68626270 | None:intergenic | 45.0% |
| !! | GCGTTTGATTTGGTGGAGAA+TGG | + | chr4.3:68626186-68626205 | MS.gene88091:intron | 45.0% |
| !! | TGTGAGTGCGTTTGATTTGG+TGG | + | chr4.3:68626179-68626198 | MS.gene88091:intron | 45.0% |
| ATACACGTGCAGTAGCGTAG+AGG | - | chr4.3:68625365-68625384 | None:intergenic | 50.0% | |
| CGATGAACGGAGTAGAGAGT+TGG | + | chr4.3:68625471-68625490 | MS.gene88091:CDS | 50.0% | |
| CTGGTTGGAATGGGAGTGAT+GGG | + | chr4.3:68626479-68626498 | MS.gene88091:CDS | 50.0% | |
| GACCGTGAGTCTAACTGGAT+TGG | + | chr4.3:68625430-68625449 | MS.gene88091:CDS | 50.0% | |
| GGTGAAGGTGAAGAGGAGTT+TGG | + | chr4.3:68626510-68626529 | MS.gene88091:CDS | 50.0% | |
| TGGTTGGAATGGGAGTGATG+GGG | + | chr4.3:68626480-68626499 | MS.gene88091:CDS | 50.0% | |
| TGTGTGGCGTGGTACTACAA+GGG | + | chr4.3:68625513-68625532 | MS.gene88091:CDS | 50.0% | |
| TTGTGTGGCGTGGTACTACA+AGG | + | chr4.3:68625512-68625531 | MS.gene88091:CDS | 50.0% | |
| ! | TGATGGGGAGTTTGAGGTGA+AGG | + | chr4.3:68626495-68626514 | MS.gene88091:CDS | 50.0% |
| !! | AGGAGATTTTGGGTCGTCTG+AGG | - | chr4.3:68626037-68626056 | None:intergenic | 50.0% |
| GCTGCTCCTGAATCTGCTTC+TGG | + | chr4.3:68625562-68625581 | MS.gene88091:CDS | 55.0% | |
| GCTGGTTGGAATGGGAGTGA+TGG | + | chr4.3:68626478-68626497 | MS.gene88091:CDS | 55.0% | |
| GTTGGGACCGTGAGTCTAAC+TGG | + | chr4.3:68625425-68625444 | MS.gene88091:CDS | 55.0% | |
| TACCTAACCCACCATGACGC+CGG | - | chr4.3:68626583-68626602 | None:intergenic | 55.0% | |
| TAGCAGCAGCAGTGACGATG+AGG | + | chr4.3:68625963-68625982 | MS.gene88091:CDS | 55.0% | |
| TGTTTGGGTCCCCGCAAGTT+GGG | + | chr4.3:68626239-68626258 | MS.gene88091:CDS | 55.0% | |
| ! | TGGGAGTGATGGGGAGTTTG+AGG | + | chr4.3:68626489-68626508 | MS.gene88091:CDS | 55.0% |
| !! | GAAGGAAGAGTGTCACGTGC+CGG | + | chr4.3:68626561-68626580 | MS.gene88091:CDS | 55.0% |
| !! | GCGTCATGGTGGGTTAGGTA+TGG | + | chr4.3:68626583-68626602 | MS.gene88091:CDS | 55.0% |
| GTGTTTGGGTCCCCGCAAGT+TGG | + | chr4.3:68626238-68626257 | MS.gene88091:CDS | 60.0% | |
| ! | AGTGTCACGTGCCGGCGTCA+TGG | + | chr4.3:68626569-68626588 | MS.gene88091:CDS | 65.0% |
| ! | TCACGTGCCGGCGTCATGGT+GGG | + | chr4.3:68626573-68626592 | MS.gene88091:CDS | 65.0% |
| !! | TGCCGGCGTCATGGTGGGTT+AGG | + | chr4.3:68626578-68626597 | MS.gene88091:CDS | 65.0% |
| ! | GTCACGTGCCGGCGTCATGG+TGG | + | chr4.3:68626572-68626591 | MS.gene88091:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.3 | gene | 68625295 | 68626612 | 68625295 | ID=MS.gene88091 |
| chr4.3 | mRNA | 68625295 | 68626612 | 68625295 | ID=MS.gene88091.t1;Parent=MS.gene88091 |
| chr4.3 | exon | 68625295 | 68625640 | 68625295 | ID=MS.gene88091.t1.exon1;Parent=MS.gene88091.t1 |
| chr4.3 | CDS | 68625295 | 68625640 | 68625295 | ID=cds.MS.gene88091.t1;Parent=MS.gene88091.t1 |
| chr4.3 | exon | 68625956 | 68626179 | 68625956 | ID=MS.gene88091.t1.exon2;Parent=MS.gene88091.t1 |
| chr4.3 | CDS | 68625956 | 68626179 | 68625956 | ID=cds.MS.gene88091.t1;Parent=MS.gene88091.t1 |
| chr4.3 | exon | 68626217 | 68626612 | 68626217 | ID=MS.gene88091.t1.exon3;Parent=MS.gene88091.t1 |
| chr4.3 | CDS | 68626217 | 68626612 | 68626217 | ID=cds.MS.gene88091.t1;Parent=MS.gene88091.t1 |
| Gene Sequence |
| Protein sequence |
