AlfalfaGEDB | MS.gene96225

M. sativa cultivar XinJiangDaYe / MS.gene96225

KEGG: K02955
GO: GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005840 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0019538 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0071704 GO:0110165 GO:1901564 GO:1901566 GO:1901576
PFAM: PF00411.22

Nr:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene96225.t1	XP_003593950.2	99.3	151	1	0	1	151	1	151	5.60E-76	293.5

Swissprot:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene96225.t1	O22584	96.0	149	6	0	3	151	2	150	4.5e-74	278.5

Trembl:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene96225.t1	G7IPY3	99.3	151	1	0	1	151	1	151	4.0e-76	293.5

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network:

Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049361	MS.gene96225	0.821891	3.17E-53	-1.69E-46
MS.gene049387	MS.gene96225	0.822454	2.35E-53	-1.69E-46
MS.gene050134	MS.gene96225	0.928964	1.37E-92	-1.69E-46
MS.gene050281	MS.gene96225	0.800942	1.14E-48	-1.69E-46
MS.gene050791	MS.gene96225	0.911149	8.43E-83	-1.69E-46
MS.gene050912	MS.gene96225	0.841028	6.09E-58	-1.69E-46
MS.gene051904	MS.gene96225	0.857438	1.63E-62	-1.69E-46
MS.gene051984	MS.gene96225	0.887963	8.99E-73	-1.69E-46
MS.gene052664	MS.gene96225	0.868202	7.78E-66	-1.69E-46
MS.gene052666	MS.gene96225	0.84181	3.79E-58	-1.69E-46
MS.gene053224	MS.gene96225	0.92458	5.83E-90	-1.69E-46
MS.gene055232	MS.gene96225	0.823225	1.55E-53	-1.69E-46
MS.gene056917	MS.gene96225	0.821582	3.74E-53	-1.69E-46
MS.gene057272	MS.gene96225	0.90347	3.36E-79	-1.69E-46
MS.gene057641	MS.gene96225	0.872548	2.92E-67	-1.69E-46
MS.gene057643	MS.gene96225	0.902051	1.44E-78	-1.69E-46
MS.gene059340	MS.gene96225	0.837094	6.36E-57	-1.69E-46
MS.gene060483	MS.gene96225	0.866491	2.74E-65	-1.69E-46

PPI:

Gene1	Gene2	Type
MS.gene96225	MS.gene010453	PPI
MS.gene96225	MS.gene42236	PPI
MS.gene96225	MS.gene004435	PPI
MS.gene96225	MS.gene45344	PPI
MS.gene96225	MS.gene95758	PPI
MS.gene96225	MS.gene035362	PPI
MS.gene96225	MS.gene041598	PPI
MS.gene96225	MS.gene064180	PPI
MS.gene96225	MS.gene77822	PPI
MS.gene96225	MS.gene035363	PPI
MS.gene96225	MS.gene82426	PPI
MS.gene96225	MS.gene53517	PPI
MS.gene96225	MS.gene041557	PPI
MS.gene96225	MS.gene028153	PPI
MS.gene96225	MS.gene70551	PPI
MS.gene96225	MS.gene35155	PPI
MS.gene96225	MS.gene036487	PPI
MS.gene96225	MS.gene36490	PPI
MS.gene96225	MS.gene028302	PPI
MS.gene96225	MS.gene023152	PPI
MS.gene96225	MS.gene035331	PPI
MS.gene96225	MS.gene073888	PPI
MS.gene96225	MS.gene002746	PPI
MS.gene96225	MS.gene27648	PPI
MS.gene96225	MS.gene053443	PPI
MS.gene96225	MS.gene83444	PPI
MS.gene96225	MS.gene047734	PPI
MS.gene96225	MS.gene78481	PPI
MS.gene96225	MS.gene041599	PPI
MS.gene96225	MS.gene046040	PPI
MS.gene96225	MS.gene59319	PPI
MS.gene96225	MS.gene023799	PPI
MS.gene96225	MS.gene52173	PPI
MS.gene96225	MS.gene72768	PPI
MS.gene96225	MS.gene31515	PPI
MS.gene023152	MS.gene96225	PPI

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene96225.t1	MTR_2g019670	99.338	151	1	0	1	151	1	151	1.12e-107	303
MS.gene96225.t1	MTR_4g096790	99.338	151	1	0	1	151	1	151	5.68e-107	301

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene96225.t1	AT3G11510	89.855	138	14	0	3	140	2	139	8.87e-90	258
MS.gene96225.t1	AT3G52580	89.130	138	15	0	3	140	2	139	2.75e-89	256
MS.gene96225.t1	AT2G36160	88.406	138	16	0	3	140	2	139	1.64e-88	254
MS.gene96225.t1	ATCG00750	33.613	119	70	2	29	147	28	137	7.46e-12	59.7

Find 51 sgRNAs with CRISPR-Local

Find 158 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
CTTCGTGCCCTTGCTCGTTC+TGG	0.240493	2.2:+65064737	MS.gene96225:CDS
AGCACCAGGGCCAGGTGTTT+TGG	0.248968	2.2:-65064705	None:intergenic
GCTCGTTCTGGAATGAAAAT+TGG	0.299156	2.2:+65064749	MS.gene96225:CDS
AATGTTACTGTCTCTTCCTT+TGG	0.327634	2.2:-65063330	None:intergenic
CCCTTCTACCACTCTTTCTA+CGG	0.354483	2.2:-65065760	None:intergenic
AGAGTGGTAGAAGGGGTAGA+AGG	0.383998	2.2:+65065768	MS.gene96225:CDS
AACATTGGGTCCAGCTGTTA+AGG	0.388167	2.2:+65063347	MS.gene96225:CDS
CGAAGAGCAGCTTGAGCACC+AGG	0.399712	2.2:-65064719	None:intergenic
AGTCGTCAAAGAGAAAGGTT+AGG	0.404664	2.2:+65063304	MS.gene96225:intron
TGCCGCTATGCTTGCAGCAC+AGG	0.424923	2.2:+65064373	MS.gene96225:CDS
TTTAGGTGGGATGAAAGTTA+AGG	0.429174	2.2:+65064325	MS.gene96225:intron
GGAATGAAAATTGGTCGTAT+AGG	0.435498	2.2:+65064758	MS.gene96225:CDS
GCAGCTTGAGCACCAGGGCC+AGG	0.435589	2.2:-65064713	None:intergenic
CAGCATGTTACTGATTTATC+CGG	0.460137	2.2:+65063521	MS.gene96225:intron
TGCTGCAAGCATAGCGGCAT+AGG	0.460137	2.2:-65064369	None:intergenic
GTGATAGTCGTCAAAGAGAA+AGG	0.460831	2.2:+65063299	MS.gene96225:intron
CACATTAAGCTCCGTGCCAC+TGG	0.465038	2.2:+65064671	MS.gene96225:CDS
CCCGTAGAAAGAGTGGTAGA+AGG	0.472164	2.2:+65065759	MS.gene96225:CDS
GAAACCCTTGTCCGTATCAC+TGG	0.485388	2.2:+65063548	MS.gene96225:CDS
TTTGGTCTTGTTTCCACCAG+TGG	0.501009	2.2:-65064687	None:intergenic
ACGGGTGCTATCGGAAGGAA+TGG	0.504362	2.2:-65065741	None:intergenic
ACGGACAAGGGTTTCCCTGC+CGG	0.518910	2.2:-65063540	None:intergenic
TGTTCACCATCCTTAACAGC+TGG	0.531081	2.2:-65063357	None:intergenic
ACTCTTTCTACGGGTGCTAT+CGG	0.532615	2.2:-65065750	None:intergenic
CCGTAGAAAGAGTGGTAGAA+GGG	0.533450	2.2:+65065760	MS.gene96225:CDS
AAAGGAAGAGACAGTAACAT+TGG	0.536923	2.2:+65063332	MS.gene96225:CDS
CCTTCTACCACTCTTTCTAC+GGG	0.539502	2.2:-65065759	None:intergenic
CATATATATACTAACAATGA+AGG	0.543037	2.2:-65063421	None:intergenic
ATGTTACTGATTTATCCGGC+AGG	0.543996	2.2:+65063525	MS.gene96225:CDS
GTCGTCAAAGAGAAAGGTTA+GGG	0.549356	2.2:+65063305	MS.gene96225:intron
AAGACCAAAACACCTGGCCC+TGG	0.552706	2.2:+65064701	MS.gene96225:CDS
AAGGAAGAGACAGTAACATT+GGG	0.554128	2.2:+65063333	MS.gene96225:CDS
TCTTGTTTCCACCAGTGGCA+CGG	0.555351	2.2:-65064682	None:intergenic
GAGAAAGGTTAGGGAGCCAA+AGG	0.560093	2.2:+65063314	MS.gene96225:CDS
ACTCATACATACCAGTGATA+CGG	0.570439	2.2:-65063559	None:intergenic
ATTAAGCTCCGTGCCACTGG+TGG	0.571382	2.2:+65064674	MS.gene96225:CDS
GCTGCAAGCATAGCGGCATA+GGG	0.578463	2.2:-65064368	None:intergenic
TTTCATTCCAGAACGAGCAA+GGG	0.582609	2.2:-65064744	None:intergenic
CGGGTGCTATCGGAAGGAAT+GGG	0.585535	2.2:-65065740	None:intergenic
GGAAACAAGACCAAAACACC+TGG	0.596535	2.2:+65064695	MS.gene96225:CDS
TTTCTACGGGTGCTATCGGA+AGG	0.607952	2.2:-65065746	None:intergenic
ACATACCAGTGATACGGACA+AGG	0.611084	2.2:-65063553	None:intergenic
TGTTACTGATTTATCCGGCA+GGG	0.618792	2.2:+65063526	MS.gene96225:CDS
TTGGGTCCAGCTGTTAAGGA+TGG	0.623308	2.2:+65063351	MS.gene96225:CDS
CGTAGAAAGAGTGGTAGAAG+GGG	0.630512	2.2:+65065761	MS.gene96225:CDS
GATAGCACCCGTAGAAAGAG+TGG	0.631829	2.2:+65065752	MS.gene96225:CDS
GGATGTTGCTACTAGATGCA+AGG	0.645225	2.2:+65064394	MS.gene96225:CDS
CATACCAGTGATACGGACAA+GGG	0.691082	2.2:-65063552	None:intergenic
ACGGAGCTTAATGTGAAGTG+CGG	0.698863	2.2:-65064663	None:intergenic
ATCCTGTGCTGCAAGCATAG+CGG	0.706099	2.2:-65064375	None:intergenic
GAAGAGCAGCTTGAGCACCA+GGG	0.706692	2.2:-65064718	None:intergenic

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!	GTTAAAAAATTACATATTTA+AGG	+	chr2.2:65063659-65063678	MS.gene96225:intron	10.0%
!!!	AGCATTATTTTTTTTTATAT+GGG	+	chr2.2:65064583-65064602	MS.gene96225:intron	10.0%
!!!	TAGCATTATTTTTTTTTATA+TGG	+	chr2.2:65064582-65064601	MS.gene96225:intron	10.0%
!!!	TTATAAGTTTTTAATTTAGA+TGG	+	chr2.2:65064182-65064201	MS.gene96225:intron	10.0%
!!	ATTTGATAAGTTAATTTAGA+TGG	+	chr2.2:65064104-65064123	MS.gene96225:intron	15.0%
!!	TTTGAAAAACCTTAAAAATT+TGG	+	chr2.2:65063691-65063710	MS.gene96225:intron	15.0%
!!!	GCATTATTTTTTTTTATATG+GGG	+	chr2.2:65064584-65064603	MS.gene96225:intron	15.0%
!!!	TACAAATAACCAAATTTTTA+AGG	-	chr2.2:65063703-65063722	None:intergenic	15.0%
!!!	TTAGTTACTATCATATTTTA+AGG	+	chr2.2:65063627-65063646	MS.gene96225:intron	15.0%
!!!	TTGTTTTTTTTCCAAATTTT+AGG	+	chr2.2:65064308-65064327	MS.gene96225:intron	15.0%
!!	AATATTCACTATAGTACATA+TGG	+	chr2.2:65065127-65065146	MS.gene96225:intron	20.0%
!!	ATTGAAAAATAATTATTCCC+GGG	-	chr2.2:65064021-65064040	None:intergenic	20.0%
!!	CATATATATACTAACAATGA+AGG	-	chr2.2:65063424-65063443	None:intergenic	20.0%
!!	GATAATTGTATTTAATCTGA+TGG	-	chr2.2:65064916-65064935	None:intergenic	20.0%
!!	GATTGAAAAATAATTATTCC+CGG	-	chr2.2:65064022-65064041	None:intergenic	20.0%
!!	TATTGTATAGAATAACTGTA+AGG	+	chr2.2:65065044-65065063	MS.gene96225:intron	20.0%
!!	TTCAATCTTGTAACAAATAT+GGG	+	chr2.2:65064035-65064054	MS.gene96225:intron	20.0%
!!	TTTCAATCTTGTAACAAATA+TGG	+	chr2.2:65064034-65064053	MS.gene96225:intron	20.0%
!!!	GAATTTTTTTTAAAATACCC+TGG	-	chr2.2:65063875-65063894	None:intergenic	20.0%
!!!	GATGATTTGAATGTTTTTTT+TGG	+	chr2.2:65063496-65063515	MS.gene96225:intron	20.0%
!!!	TGAATGTTTTTGTTTTGTTT+TGG	+	chr2.2:65064544-65064563	MS.gene96225:intron	20.0%
!!!	TGCTCTTATTTTAAGTTATT+TGG	+	chr2.2:65065158-65065177	MS.gene96225:intron	20.0%
!!!	TGTACTGATTCAAAATATTT+TGG	+	chr2.2:65064622-65064641	MS.gene96225:intron	20.0%
!!!	TTCAAGTTATTTGAGTTATT+TGG	+	chr2.2:65064989-65065008	MS.gene96225:intron	20.0%
!!!	TTTTTTTCCAAATTTTAGGT+GGG	+	chr2.2:65064312-65064331	MS.gene96225:intron	20.0%
!!!	TTTTTTTTCCAAATTTTAGG+TGG	+	chr2.2:65064311-65064330	MS.gene96225:intron	20.0%
!	AATTGAAAAAATTCCTAGTC+TGG	-	chr2.2:65065563-65065582	None:intergenic	25.0%
!	ACAAAATTTAATGGGAATGT+TGG	+	chr2.2:65063956-65063975	MS.gene96225:intron	25.0%
!	AGTTATAGTTAAGAGAAACA+TGG	+	chr2.2:65065099-65065118	MS.gene96225:intron	25.0%
!	ATATTTACGATGTGAAAGTT+AGG	+	chr2.2:65064852-65064871	MS.gene96225:intron	25.0%
!	CAAAATTTAATGGGAATGTT+GGG	+	chr2.2:65063957-65063976	MS.gene96225:intron	25.0%
!	GAATAATTAATTTCACTGAG+AGG	-	chr2.2:65065631-65065650	None:intergenic	25.0%
!	GCGTATTGTATAGAATTATT+TGG	+	chr2.2:65065015-65065034	MS.gene96225:intron	25.0%
!	TAACTCTCTATAATTGTTCT+TGG	-	chr2.2:65063731-65063750	None:intergenic	25.0%
!	TAATAGGTAAAAGAGAATCA+GGG	+	chr2.2:65065255-65065274	MS.gene96225:intron	25.0%
!	TTTCTCTTAACTATAACTAC+TGG	-	chr2.2:65065097-65065116	None:intergenic	25.0%
!!	AAATAAATTCCAGTTTTCCT+AGG	-	chr2.2:65063919-65063938	None:intergenic	25.0%
!!!	CATGTTTTAATTACTAGATG+TGG	+	chr2.2:65064267-65064286	MS.gene96225:intron	25.0%
	AAACCTTAAACTATCTTCTG+TGG	-	chr2.2:65064820-65064839	None:intergenic	30.0%
	AACCTTAAACTATCTTCTGT+GGG	-	chr2.2:65064819-65064838	None:intergenic	30.0%
	ACTGTGTTTACACTGTTAAA+TGG	+	chr2.2:65064502-65064521	MS.gene96225:intron	30.0%
	AGCATGATTATTCTATACTC+TGG	+	chr2.2:65063752-65063771	MS.gene96225:intron	30.0%
	ATAATTATTCCCGGGTATAA+AGG	-	chr2.2:65064013-65064032	None:intergenic	30.0%
	ATCTGTACTGTATTGAACAA+CGG	+	chr2.2:65065182-65065201	MS.gene96225:intron	30.0%
	GTAATAGGTAAAAGAGAATC+AGG	+	chr2.2:65065254-65065273	MS.gene96225:intron	30.0%
	TAAGTATATTCTCTCTCTTC+TGG	-	chr2.2:65064968-65064987	None:intergenic	30.0%
	TTGAATATTCCTAGGAAAAC+TGG	+	chr2.2:65063907-65063926	MS.gene96225:intron	30.0%
!	AACTGACTCAAATTATTCCT+AGG	+	chr2.2:65063811-65063830	MS.gene96225:intron	30.0%
!	ATGTTGCTGTTGATATTGTT+TGG	+	chr2.2:65064234-65064253	MS.gene96225:intron	30.0%
!	GTTTTTGTCAAAACACTCTT+AGG	-	chr2.2:65064072-65064091	None:intergenic	30.0%
!	TCAAACCAAAATGCGTTTTT+GGG	+	chr2.2:65064469-65064488	MS.gene96225:intron	30.0%
!	TGTTAGGATTTTTATCTCAG+TGG	+	chr2.2:65063779-65063798	MS.gene96225:intron	30.0%
!!	TTTTTATGTTGCTATTGCAG+AGG	+	chr2.2:65065709-65065728	MS.gene96225:intron	30.0%
!!!	GATTCAAAATATTTTGGAGC+AGG	+	chr2.2:65064628-65064647	MS.gene96225:intron	30.0%
	AAAGACAGTAGTTTGAATCC+AGG	+	chr2.2:65063854-65063873	MS.gene96225:intron	35.0%
	AAAGAGAATCAGGGATATCT+AGG	+	chr2.2:65065264-65065283	MS.gene96225:intron	35.0%
	AAAGGAAGAGACAGTAACAT+TGG	+	chr2.2:65063332-65063351	MS.gene96225:CDS	35.0%
	AACCCACAGAAGATAGTTTA+AGG	+	chr2.2:65064814-65064833	MS.gene96225:intron	35.0%
	AAGACAGTAGTTTGAATCCA+GGG	+	chr2.2:65063855-65063874	MS.gene96225:intron	35.0%
	AAGGAAGAGACAGTAACATT+GGG	+	chr2.2:65063333-65063352	MS.gene96225:CDS	35.0%
	AATGTTACTGTCTCTTCCTT+TGG	-	chr2.2:65063333-65063352	None:intergenic	35.0%
	ACCAGAAAATCCAAATGTCT+TGG	-	chr2.2:65065372-65065391	None:intergenic	35.0%
	ACTCATACATACCAGTGATA+CGG	-	chr2.2:65063562-65063581	None:intergenic	35.0%
	ACTGAGTACGATATGGTAAT+AGG	+	chr2.2:65065239-65065258	MS.gene96225:intron	35.0%
	ATTTCACTGAGAGGAAGATA+AGG	-	chr2.2:65065622-65065641	None:intergenic	35.0%
	CAGCAACATGAATGTATCTT+AGG	-	chr2.2:65064223-65064242	None:intergenic	35.0%
	CCAGAAAATCCAAATGTCTT+GGG	-	chr2.2:65065371-65065390	None:intergenic	35.0%
	CTAGGAAAATATGTTGCACA+AGG	+	chr2.2:65065282-65065301	MS.gene96225:intron	35.0%
	CTTTCATCCCACCTAAAATT+TGG	-	chr2.2:65064322-65064341	None:intergenic	35.0%
	GCTGTTGATATTGTTTGGTT+TGG	+	chr2.2:65064239-65064258	MS.gene96225:intron	35.0%
	GGAATGAAAATTGGTCGTAT+AGG	+	chr2.2:65064758-65064777	MS.gene96225:CDS	35.0%
	GGATAGACATTTCATCTCTA+TGG	-	chr2.2:65065343-65065362	None:intergenic	35.0%
	TATCGTACTCAGTTCATCAA+CGG	-	chr2.2:65065232-65065251	None:intergenic	35.0%
	TCTCTCTTCTGGTAAAATAG+AGG	-	chr2.2:65064957-65064976	None:intergenic	35.0%
	TTCACAAGAACCTTTATACC+CGG	+	chr2.2:65064000-65064019	MS.gene96225:intron	35.0%
	TTCTAGTGTATGTTGTTCCT+AGG	-	chr2.2:65063831-65063850	None:intergenic	35.0%
	TTGATGAACTGAGTACGATA+TGG	+	chr2.2:65065232-65065251	MS.gene96225:intron	35.0%
	TTTAGGTGGGATGAAAGTTA+AGG	+	chr2.2:65064325-65064344	MS.gene96225:intron	35.0%
	TTTCAGTCTAATCCACGAAA+GGG	+	chr2.2:65065526-65065545	MS.gene96225:intron	35.0%
!	AAGACATTTGGATTTTCTGG+TGG	+	chr2.2:65065371-65065390	MS.gene96225:intron	35.0%
!	AAGGATGGTGAACATGTTTT+CGG	+	chr2.2:65063366-65063385	MS.gene96225:CDS	35.0%
!	GTCAAACCAAAATGCGTTTT+TGG	+	chr2.2:65064468-65064487	MS.gene96225:intron	35.0%
!	TCAACGGTGAACCTTATTTA+CGG	-	chr2.2:65065216-65065235	None:intergenic	35.0%
!	TCTATACTCTGGTTTGTGTT+AGG	+	chr2.2:65063763-65063782	MS.gene96225:intron	35.0%
!	TTTCACCCAAAAACGCATTT+TGG	-	chr2.2:65064477-65064496	None:intergenic	35.0%
!!	CAGCATGTTACTGATTTATC+CGG	+	chr2.2:65063521-65063540	MS.gene96225:intron	35.0%
!!	TTTCGTGGATTAGACTGAAA+CGG	-	chr2.2:65065526-65065545	None:intergenic	35.0%
	ACAGGATTTAGCAAGCAAAC+AGG	-	chr2.2:65065498-65065517	None:intergenic	40.0%
	AGTCGTCAAAGAGAAAGGTT+AGG	+	chr2.2:65063304-65063323	MS.gene96225:intron	40.0%
	ATCCAAATGTCTTGGGACTA+AGG	-	chr2.2:65065364-65065383	None:intergenic	40.0%
	ATCCTTAGTCCCAAGACATT+TGG	+	chr2.2:65065359-65065378	MS.gene96225:intron	40.0%
	ATTTAGCAAGCAAACAGGGA+AGG	-	chr2.2:65065493-65065512	None:intergenic	40.0%
	CAGGATTTAGCAAGCAAACA+GGG	-	chr2.2:65065497-65065516	None:intergenic	40.0%
	CATCGTAAATATCAGAGAGC+AGG	-	chr2.2:65064844-65064863	None:intergenic	40.0%
	CCACACTCTTGAATATTCCT+AGG	+	chr2.2:65063899-65063918	MS.gene96225:intron	40.0%
	CCTAGGAATATTCAAGAGTG+TGG	-	chr2.2:65063902-65063921	None:intergenic	40.0%
	GTCGTCAAAGAGAAAGGTTA+GGG	+	chr2.2:65063305-65063324	MS.gene96225:intron	40.0%
	GTGATAGTCGTCAAAGAGAA+AGG	+	chr2.2:65063299-65063318	MS.gene96225:intron	40.0%
	GTTTCAGTCTAATCCACGAA+AGG	+	chr2.2:65065525-65065544	MS.gene96225:intron	40.0%
	TAGACTGAAACGGTGATTAC+AGG	-	chr2.2:65065516-65065535	None:intergenic	40.0%
	TCACAAGAACCTTTATACCC+GGG	+	chr2.2:65064001-65064020	MS.gene96225:intron	40.0%
	TTTCATTCCAGAACGAGCAA+GGG	-	chr2.2:65064747-65064766	None:intergenic	40.0%
!	CCCAAGACATTTGGATTTTC+TGG	+	chr2.2:65065368-65065387	MS.gene96225:intron	40.0%
!	TCTACCACGTGAGTTCTTTT+TGG	-	chr2.2:65065439-65065458	None:intergenic	40.0%
!	TTTTCATTCCAGAACGAGCA+AGG	-	chr2.2:65064748-65064767	None:intergenic	40.0%
!!	ACATTTGGATTTTCTGGTGG+TGG	+	chr2.2:65065374-65065393	MS.gene96225:intron	40.0%
!!	ATGTTACTGATTTATCCGGC+AGG	+	chr2.2:65063525-65063544	MS.gene96225:CDS	40.0%
!!	GCTCGTTCTGGAATGAAAAT+TGG	+	chr2.2:65064749-65064768	MS.gene96225:CDS	40.0%
!!	TGTTACTGATTTATCCGGCA+GGG	+	chr2.2:65063526-65063545	MS.gene96225:CDS	40.0%
!!!	AATATTTTGGAGCAGGAGCT+CGG	+	chr2.2:65064635-65064654	MS.gene96225:intron	40.0%
	AACATTGGGTCCAGCTGTTA+AGG	+	chr2.2:65063347-65063366	MS.gene96225:CDS	45.0%
	ACATACCAGTGATACGGACA+AGG	-	chr2.2:65063556-65063575	None:intergenic	45.0%
	ACGGAGCTTAATGTGAAGTG+CGG	-	chr2.2:65064666-65064685	None:intergenic	45.0%
	ACTGAGAGGAAGATAAGGTC+AGG	-	chr2.2:65065617-65065636	None:intergenic	45.0%
	CAGTCCAAAAAGAACTCACG+TGG	+	chr2.2:65065432-65065451	MS.gene96225:intron	45.0%
	CATACCAGTGATACGGACAA+GGG	-	chr2.2:65063555-65063574	None:intergenic	45.0%
	CCCTTCTACCACTCTTTCTA+CGG	-	chr2.2:65065763-65065782	None:intergenic	45.0%
	CCGTAGAAAGAGTGGTAGAA+GGG	+	chr2.2:65065760-65065779	MS.gene96225:CDS	45.0%
	CCTTCTACCACTCTTTCTAC+GGG	-	chr2.2:65065762-65065781	None:intergenic	45.0%
	CGGTCGAATTGCCGTAAATA+AGG	+	chr2.2:65065202-65065221	MS.gene96225:intron	45.0%
	CGTAGAAAGAGTGGTAGAAG+GGG	+	chr2.2:65065761-65065780	MS.gene96225:CDS	45.0%
	CTGAGAGGAAGATAAGGTCA+GGG	-	chr2.2:65065616-65065635	None:intergenic	45.0%
	GAAATGTGACAACCCTTTCG+TGG	-	chr2.2:65065541-65065560	None:intergenic	45.0%
	GGAAACAAGACCAAAACACC+TGG	+	chr2.2:65064695-65064714	MS.gene96225:CDS	45.0%
	GGATGTTGCTACTAGATGCA+AGG	+	chr2.2:65064394-65064413	MS.gene96225:CDS	45.0%
	GGTTGTCACATTTCCAGACT+AGG	+	chr2.2:65065547-65065566	MS.gene96225:intron	45.0%
	GTTGCTACTAGATGCAAGGT+CGG	+	chr2.2:65064398-65064417	MS.gene96225:intron	45.0%
	TGTTCACCATCCTTAACAGC+TGG	-	chr2.2:65063360-65063379	None:intergenic	45.0%
!	ACTCTTTCTACGGGTGCTAT+CGG	-	chr2.2:65065753-65065772	None:intergenic	45.0%
!	CACGTGAGTTCTTTTTGGAC+TGG	-	chr2.2:65065434-65065453	None:intergenic	45.0%
!!	TTTGGTCTTGTTTCCACCAG+TGG	-	chr2.2:65064690-65064709	None:intergenic	45.0%
!!	AAAATTATACAAAATTTAAT+GGG	+	chr2.2:65063948-65063967	MS.gene96225:intron	5.0%
!!	TAAAATTATACAAAATTTAA+TGG	+	chr2.2:65063947-65063966	MS.gene96225:intron	5.0%
	AGAGTGGTAGAAGGGGTAGA+AGG	+	chr2.2:65065768-65065787	MS.gene96225:CDS	50.0%
	ATCCTGTGCTGCAAGCATAG+CGG	-	chr2.2:65064378-65064397	None:intergenic	50.0%
	CCCGTAGAAAGAGTGGTAGA+AGG	+	chr2.2:65065759-65065778	MS.gene96225:CDS	50.0%
	GAAACCCTTGTCCGTATCAC+TGG	+	chr2.2:65063548-65063567	MS.gene96225:CDS	50.0%
	GAGAAAGGTTAGGGAGCCAA+AGG	+	chr2.2:65063314-65063333	MS.gene96225:CDS	50.0%
	GATAGCACCCGTAGAAAGAG+TGG	+	chr2.2:65065752-65065771	MS.gene96225:CDS	50.0%
	TTGGGTCCAGCTGTTAAGGA+TGG	+	chr2.2:65063351-65063370	MS.gene96225:CDS	50.0%
!	TCTTGTTTCCACCAGTGGCA+CGG	-	chr2.2:65064685-65064704	None:intergenic	50.0%
!	TGGTGAACATGTTTTCGGCG+TGG	+	chr2.2:65063371-65063390	MS.gene96225:CDS	50.0%
!	TTTCTACGGGTGCTATCGGA+AGG	-	chr2.2:65065749-65065768	None:intergenic	50.0%
!!	TTTCTGGTGGTGGTTGCTGT+AGG	+	chr2.2:65065384-65065403	MS.gene96225:intron	50.0%
	AAGACCAAAACACCTGGCCC+TGG	+	chr2.2:65064701-65064720	MS.gene96225:CDS	55.0%
	CACATTAAGCTCCGTGCCAC+TGG	+	chr2.2:65064671-65064690	MS.gene96225:CDS	55.0%
	GAAGAGCAGCTTGAGCACCA+GGG	-	chr2.2:65064721-65064740	None:intergenic	55.0%
	GCTGCAAGCATAGCGGCATA+GGG	-	chr2.2:65064371-65064390	None:intergenic	55.0%
	TGCTGCAAGCATAGCGGCAT+AGG	-	chr2.2:65064372-65064391	None:intergenic	55.0%
!	ACGGGTGCTATCGGAAGGAA+TGG	-	chr2.2:65065744-65065763	None:intergenic	55.0%
!	ATTAAGCTCCGTGCCACTGG+TGG	+	chr2.2:65064674-65064693	MS.gene96225:CDS	55.0%
!	CGGGTGCTATCGGAAGGAAT+GGG	-	chr2.2:65065743-65065762	None:intergenic	55.0%
	ACGGACAAGGGTTTCCCTGC+CGG	-	chr2.2:65063543-65063562	None:intergenic	60.0%
	CGAAGAGCAGCTTGAGCACC+AGG	-	chr2.2:65064722-65064741	None:intergenic	60.0%
	CTTCGTGCCCTTGCTCGTTC+TGG	+	chr2.2:65064737-65064756	MS.gene96225:CDS	60.0%
	TGCCGCTATGCTTGCAGCAC+AGG	+	chr2.2:65064373-65064392	MS.gene96225:CDS	60.0%
!	AGCACCAGGGCCAGGTGTTT+TGG	-	chr2.2:65064708-65064727	None:intergenic	60.0%
	GCAGCTTGAGCACCAGGGCC+AGG	-	chr2.2:65064716-65064735	None:intergenic	70.0%

Chromosome	Type	Strat	End	Strand	Name
chr2.2	gene	65063208	65065796	65063208	ID=MS.gene96225
chr2.2	mRNA	65063208	65065796	65063208	ID=MS.gene96225.t1;Parent=MS.gene96225
chr2.2	exon	65063208	65063210	65063208	ID=MS.gene96225.t1.exon1;Parent=MS.gene96225.t1
chr2.2	CDS	65063208	65063210	65063208	ID=cds.MS.gene96225.t1;Parent=MS.gene96225.t1
chr2.2	exon	65063306	65063428	65063306	ID=MS.gene96225.t1.exon2;Parent=MS.gene96225.t1
chr2.2	CDS	65063306	65063428	65063306	ID=cds.MS.gene96225.t1;Parent=MS.gene96225.t1
chr2.2	exon	65063524	65063569	65063524	ID=MS.gene96225.t1.exon3;Parent=MS.gene96225.t1
chr2.2	CDS	65063524	65063569	65063524	ID=cds.MS.gene96225.t1;Parent=MS.gene96225.t1
chr2.2	exon	65064330	65064415	65064330	ID=MS.gene96225.t1.exon4;Parent=MS.gene96225.t1
chr2.2	CDS	65064330	65064415	65064330	ID=cds.MS.gene96225.t1;Parent=MS.gene96225.t1
chr2.2	exon	65064650	65064779	65064650	ID=MS.gene96225.t1.exon5;Parent=MS.gene96225.t1
chr2.2	CDS	65064650	65064779	65064650	ID=cds.MS.gene96225.t1;Parent=MS.gene96225.t1
chr2.2	exon	65065729	65065796	65065729	ID=MS.gene96225.t1.exon6;Parent=MS.gene96225.t1
chr2.2	CDS	65065729	65065796	65065729	ID=cds.MS.gene96225.t1;Parent=MS.gene96225.t1

Gene Sequence

>MS.gene96225

ATGGTATCTTCATACGTACATCGATTCTCTAATTGATTTAAAGCAACACTTGTTCGATTTAATTGATGATTTTTTTTTTTCTTTTTTTTTTGTGATAGTCGTCAAAGAGAAAGGTTAGGGAGCCAAAGGAAGAGACAGTAACATTGGGTCCAGCTGTTAAGGATGGTGAACATGTTTTCGGCGTGGCTCGCATTTTTGCTTCGTTTAACGACACCTTCATTGTTAGTATATATATGACTCTGTTTCTTTTTTTTTAGTTTGAATTATTGTTTTTTGAAGTTTGATTTTGATGATTTGAATGTTTTTTTTGGTACAGCATGTTACTGATTTATCCGGCAGGGAAACCCTTGTCCGTATCACTGGTATGTATGAGTTTTTTCTTCATATATCATTTTTCAGCTGTTTGTTAGTTATTAATTTTAGTTACTATCATATTTTAAGGTTTAATGTAGTTAAAAAATTACATATTTAAGGTTTTTTTTTTTTGAAAAACCTTAAAAATTTGGTTATTTGTATTAGACCAAGAACAATTATAGAGAGTTATAGCATGATTATTCTATACTCTGGTTTGTGTTAGGATTTTTATCTCAGTGGCGTTTGTTTAACTGACTCAAATTATTCCTAGGAACAACATACACTAGAATATAAAGACAGTAGTTTGAATCCAGGGTATTTTAAAAAAAATTCTTTGCCACACTCTTGAATATTCCTAGGAAAACTGGAATTTATTTTCTTTTAATAAAATTATACAAAATTTAATGGGAATGTTGGGTGTTGTGAGAAGTTATTTCATTCACAAGAACCTTTATACCCGGGAATAATTATTTTTCAATCTTGTAACAAATATGGGTATACTCAATTCCTAAGAGTGTTTTGACAAAAACTGTTTACGAGTGATTTGATAAGTTAATTTAGATGGAATTAATTTGATCAACACTAAGATAATATTTGATCAACACTAAGATAATATTATGTTATAAGTTTTTAATTTAGATGGAATTAATTTGATTAACCTAAGATACATTCATGTTGCTGTTGATATTGTTTGGTTTGGAATTGCATGTTTTAATTACTAGATGTGGTTTTCTCATATTTTTATTTTGTTTTTTTTCCAAATTTTAGGTGGGATGAAAGTTAAGGCTGACAGAGATGAGTCATCTCCCTATGCCGCTATGCTTGCAGCACAGGATGTTGCTACTAGATGCAAGGTCGGTAGATTTCTCATTAATATATAATGCTTTCTATTTACACTGATAACTTGTCAAACCAAAATGCGTTTTTGGGTGAAAATTGAACTGTGTTTACACTGTTAAATGGCTGTTTCTGAGCTTCAGTTTGAATGTTTTTGTTTTGTTTTGGCATTTGTTTAGTAAGTAGCATTATTTTTTTTTATATGGGGAGCTGTCAAGTTTGTTGTACTGATTCAAAATATTTTGGAGCAGGAGCTCGGTATTACCGCACTTCACATTAAGCTCCGTGCCACTGGTGGAAACAAGACCAAAACACCTGGCCCTGGTGCTCAAGCTGCTCTTCGTGCCCTTGCTCGTTCTGGAATGAAAATTGGTCGTATAGGTATTTGCATTTACTGAAATTCTATTTTTTTGTTAACCCACAGAAGATAGTTTAAGGTTTACCTGCTCTCTGATATTTACGATGTGAAAGTTAGGAATGTTACTCTGTACGATCGATCATATAATACTAGACACCATCAGATTAAATACAATTATCGAAAAGAAAACTATATAGCCTCTATTTTACCAGAAGAGAGAGAATATACTTATTTCAAGTTATTTGAGTTATTTGGCGTGCGTATTGTATAGAATTATTTGGCGTGCGTATTGTATAGAATAACTGTAAGGTTGACTAATTGAGTCATGTAAGATATTCCAGTAGTTATAGTTAAGAGAAACATGGATATTAATATTCACTATAGTACATATGGTTTGTGTATGCTCTTATTTTAAGTTATTTGGCATCTGTACTGTATTGAACAACGGTCGAATTGCCGTAAATAAGGTTCACCGTTGATGAACTGAGTACGATATGGTAATAGGTAAAAGAGAATCAGGGATATCTAGGAAAATATGTTGCACAAGGAAATAATGATAAATCAAAGAAAAATAATGCACAAACCATAGAGATGAAATGTCTATCCTTAGTCCCAAGACATTTGGATTTTCTGGTGGTGGTTGCTGTAGGTATTTTATATTTGCGTAATATTGTCCAGTCCAAAAAGAACTCACGTGGTAGATGCAACAAAATAATTTTGCATTCTTTCATTGCCTTCCCTGTTTGCTTGCTAAATCCTGTAATCACCGTTTCAGTCTAATCCACGAAAGGGTTGTCACATTTCCAGACTAGGAATTTTTTCAATTATAAAGATGATGTTTGTCTTTTTAAGTAAACCCTGACCTTATCTTCCTCTCAGTGAAATTAATTATTCTGTCAATCATCATTATTATTTCTACATTTTGTTGTATGTTATTTTCTAATTGATTTCATTTTTATGTTGCTATTGCAGAGGATGTCACTCCCATTCCTTCCGATAGCACCCGTAGAAAGAGTGGTAGAAGGGGTAGAAGGCTTTAG

Protein sequence

>MS.gene96225.t1

MSSKRKVREPKEETVTLGPAVKDGEHVFGVARIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVATRCKELGITALHIKLRATGGNKTKTPGPGAQAALRALARSGMKIGRIEDVTPIPSDSTRRKSGRRGRRL