AlfalfaGEDB | MS.gene068038

M. sativa cultivar XinJiangDaYe / MS.gene068038

KEGG: K01469
GO: GO:0003674 GO:0003824 GO:0016787
PFAM: PF01968.21 PF02538.17 PF05378.16 PF19278.2

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene068038.t1	XP_003608417.1	98.9	1266	14	0	1	1266	1	1266	0.00E+00	2494.2

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene068038.t1	Q9FIZ7	81.3	1270	230	2	1	1266	1	1266	0.0e+00	2115.9

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene068038.t1	G7JV66	98.9	1266	14	0	1	1266	1	1266	0.0e+00	2494.2

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049159	MS.gene068038	0.806772	6.99E-50	-1.69E-46
MS.gene049404	MS.gene068038	0.814493	1.50E-51	-1.69E-46
MS.gene04976	MS.gene068038	0.801544	8.57E-49	-1.69E-46
MS.gene050020	MS.gene068038	0.816163	6.37E-52	-1.69E-46
MS.gene05016	MS.gene068038	0.828782	7.42E-55	-1.69E-46
MS.gene050226	MS.gene068038	0.809673	1.68E-50	-1.69E-46
MS.gene050227	MS.gene068038	0.801855	7.39E-49	-1.69E-46
MS.gene050237	MS.gene068038	0.806427	8.27E-50	-1.69E-46
MS.gene050442	MS.gene068038	0.804802	1.81E-49	-1.69E-46
MS.gene050680	MS.gene068038	0.819049	1.42E-52	-1.69E-46

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene068038.t1	MTR_4g093870	98.894	1266	14	0	1	1266	1	1266	0.0	2573

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene068038.t1	AT5G37830	81.260	1270	230	2	1	1266	1	1266	0.0	2157

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Find 315 sgRNAs with CRISPR-Local

Find 363 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGAAAGAAACCTTACAC+TGG	0.619401	4.3:+20751424	None:intergenic
AAAAGGTGTCTTTCAGGAAG+AGG	0.548287	4.3:-20752541	MS.gene068038:CDS
AAAATCTGAAGAATTTCGCC+AGG	0.550546	4.3:+20751475	None:intergenic
AAACCATTGGAGGTGGAAGT+GGG	0.565646	4.3:-20751837	MS.gene068038:CDS
AAAGAATGCTGACGGTAACT+GGG	0.588860	4.3:+20751626	None:intergenic
AAAGGTGTCTTTCAGGAAGA+GGG	0.544537	4.3:-20752540	MS.gene068038:CDS
AAATCACAATATTTCTGTTC+TGG	0.382104	4.3:+20753333	None:intergenic
AAATCCCGGGCCATCGGAAT+GGG	0.449816	4.3:-20755143	MS.gene068038:CDS
AAATGCAGTAAATACAACAT+CGG	0.648438	4.3:+20751930	None:intergenic
AAATGCTTATCGGAAGAATC+AGG	0.436725	4.3:-20753891	MS.gene068038:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AATATGGATGGGAAATAATC+AGG	+	chr4.3:20752671-20752690	None:intergenic	30.0%
ACAAAGTCAAGGATTTAAAG+AGG	-	chr4.3:20753147-20753166	MS.gene068038:CDS	30.0%
ACTGAAAAATTTACTGGAGA+AGG	-	chr4.3:20751986-20752005	MS.gene068038:CDS	30.0%
AGAGCCATTATAACCAAATA+TGG	-	chr4.3:20753571-20753590	MS.gene068038:CDS	30.0%
CAAGTAGTCTTTAATAACTG+GGG	+	chr4.3:20752189-20752208	None:intergenic	30.0%
CTGAAAAATTTACTGGAGAA+GGG	-	chr4.3:20751987-20752006	MS.gene068038:CDS	30.0%
GACAAGTAGTCTTTAATAAC+TGG	+	chr4.3:20752191-20752210	None:intergenic	30.0%
GATTATTTCCCATCCATATT+TGG	-	chr4.3:20752671-20752690	MS.gene068038:CDS	30.0%
GCTTGTACTGAAAAATTTAC+TGG	-	chr4.3:20751980-20751999	MS.gene068038:CDS	30.0%
GTTATTAAAGACTACTTGTC+AGG	-	chr4.3:20752191-20752210	MS.gene068038:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4.3	gene	20751438	20755238	20751438	ID=MS.gene068038
chr4.3	mRNA	20751438	20755238	20751438	ID=MS.gene068038.t1;Parent=MS.gene068038
chr4.3	exon	20751438	20755238	20751438	ID=MS.gene068038.t1.exon1;Parent=MS.gene068038.t1
chr4.3	CDS	20751438	20755238	20751438	ID=cds.MS.gene068038.t1;Parent=MS.gene068038.t1

Gene Sequence

>MS.gene068038

ATGGGGAGTGTTACTGAAGGAAAGTTAAGATTTTGTATCGACAGAGGCGGTACCTTTACTGATGTTTATGCTGAAATCCCGGGCCATCGGAATGGGATAGTATTGAAGCTTTTGTCAGTTGATCCTTTGAACTATGACGATGCACCGGTGGAAGGGATACGGAGGATTCTGGAAGAGTTTACCGGTGAGAAAATTCCGCGTAGCTCGAAAATACCTACTGAGAAGATTGAGTGGATAAGGATGGGTACAACTGTGGCAACCAATGCGCTTCTAGAGCGTAAGGGAGAAAGGATTGCTGTGTGTGTGACTAGAGGCTTTCGTGATTTGCTTCAGATTGGTAACCAGGCTCGTCCGAGTATATTTGATCTTACTGTGTCAAAGCCTTCGAATCTTTATGAAGAGGTTGTTGAGGTGGAAGAGAGAGTTGAACTTGTTCAGGCAAAGGAAGAAGAAGAAAGTCTGAGTGCTTCTTCGCCAATTGTTAAAGGTATTTCGGGAGAGCTTGTTAAGATTGTAAAGCCTCTTAATGAAGAAGCGTTGAAGCTTGTACTGAAAAATTTACTGGAGAAGGGAATTAGTTGTCTAGCGGTTGTTTTGATGCACTCGTACACTTATCCTCAGCATGAACAACAGGTGGAGAGGTTAGCTTTGAGTCTGGGATTTAAACATGTTTCGATATCATCTGCTTTGTCTCCCATGGTTCGTGCTGTTCCTCGTGGTCTAACAGCTAGTGTGGATGCTTATTTGACCCCAGTTATTAAAGACTACTTGTCAGGATTCATTTCCAAATTTGAAGAGGGGCTTAGCAAGTTGAATGTTTTGTTTATGCAATCAGATGGAGGACTTGCGCCAGAGAGTACCTTCTCGGGGCACAAAGCAATTCTGTCTGGCCCTGCTGGTGGAGTTGTTGGTTACTCACAAACTCTTTTTGGTCTTGAAACAGAAAAGCCATTGATTGGATTTGATATGGGAGGTACATCCACGGATGTGAGTCGATATGCTGGAAGTTATGAGCAAGTGCTGGAAACCCAAATTGCTGGTGCCATAATTCAAGCACCTCAGCTTGACATAAACACTGTGGCTGCTGGAGGTGGTTCAAAGTTAAAGTTCCAGTTCGGTGCTTTTCAAGTTGGACCAGAATCAGTTGGAGCACACCCAGGTCCGGTATGTTATCGAAAAGGTGGAGAGTTGGCAATTACAGATGCCAATCTTGTTCTCGGTTATGTCATTCCTGATTATTTCCCATCCATATTTGGCCCAAATGAGGACCAGCCTCTTGATGTCAAGTCAACAAGAGAAGAATTTGAGAAGCTTGCTGGTAATATAAATGCTTATCGGAAGAATCAGGATCCATCTGCAAAAGACATGACGGTCGAAGAGATTGCACTTGGCTTTGTGGATGTTGCTAATGAGACAATGTGTCGTCCAATAAGGCAGTTGACTGAAATGAAGGGCCATGAGACAAAGAATCATGCACTTGCTTGCTTTGGAGGTGCTGGACCTCAACATGCTTGTGCTATAGCCAGGTCTCTAGGTATGAAAGAAGTGCTTATTCACAAATTTTGTGGGATTTTAAGCGCTTATGGAATGGGATTGGCAAATGTTGTAGAAGAAGTGCAGGAGCCTTATGCTGCGGTTTATGGAACTGAATCTACTCTTGAGGCTTCACAACGAGAAGCTCTGTTACTGAAACAAGTTAAGCAGAAGTTACAAAGTCAAGGATTTAAAGAGGAAAATATTTCAACAGACACATATTTAAACTTGAGATATGAAGGCACAGACACTGCCATCATGGTCAAAAGGAAAATAGTTAAAGATGAAATACCATTTGACTATGCTACCGAGTTTGTGAGCTTGTTTCAGCAGGAGTATGGTTTTAAACTCCAGAACAGAAATATTGTGATTTGTGATGTTAGAGTTCGTGGTACAGGAGTTACCAATATATTGAGACCACAAGCCATAGAACCTGCCTCTGGGAGTCCTATAATTGAAGGCTACTATAAGGTTTACTTTGGAAATGGTTGGCAGGAAGCACCTCTCTATAAGCTTGAAAAGCTGGGGTATGGACATACGATGTCTGGCCCAGCAATCGTCATGAACGGTAATAGCACTGTGATTGTAGAACCCAATTGTAGAGCCATTATAACCAAATATGGAAACATCAAAATTGAAATTGATTCACCTGTGAGCAGCATTAAAATATCAGATAAAGTTGCAGATGTTGTACAACTCTCTATTTTCAATCACAGGTTTATGGGTATAGCCGAGCAGATGGGAAGGACTTTGCAAAGAACTTCAATTTCGACAAATATCAAAGAACGGCTTGATTTTTCTTGTGCTCTATTTGATCCTCACGGGGGCCTAGTTGCAAATGCACCTCACGTTCCTGTCCATCTAGGAGCAATGTCTAGTACAGTTCGTTGGCAACTCAATTACTGGAACGACAATTTGAATGAAGGAGATGTTTTGGTTACTAACCATCCGTCAGCCGGAGGTAGCCATCTTCCTGATATAACTGTTGTTACACCTGTTTTTTTTAATGGGAAGTTGGTATTTTTTGTTGCAAATAGAGGCCATCATGCAGAGATAGGGGGTATTACTCCTGGAAGCATGCCTCCATTTTCAAAGTCCATATTGGAGGAAGGAGCTGCCATTAAGGCGTTTAAGCTTGTTGAAAAAGGTGTCTTTCAGGAAGAGGGGATTGTTAAACTTTTACAGTTCCCAAGCTCCGATGACCGTGGAACTAAGATTCGAGGAACTCGCAGGATTCAAGATAACCTATCTGATTTGCAAGCACAAGTAGCAGCAAATCAAAGAGGAATTTGTCTAGTCCTGGAGCTTATTGAACAATATGGACTGGAAACTGTTCAAGCTTACATGAATTACGTACAGATGAATGCAGAAGGAGCAGTAAGAGAGATGCTGAAGTCAGTTGGTCGTAGAATTTCATCTGAGTCAAATGAAAACTCTGTGACAATTGAAGAAGAGGACTACATGGATGATGGATCTGTTATTCATTTGAAACTGAGCATTGACTCTAACAAAGGAGAAGCAATTTTTGATTTTGGTGGGACAAGTGCAGAAGTTTATGGTAATTGGAATGCACCAGAAGCCGTAACAGCTGCAGCTGTCATTTACTGCATTCGCTGTTTAGTGGATGTTGATATTCCTCTCAATCAAGGCTGTTTGGCTCCGGTGAAGATTCATATTCCAGAAGGCTCATTTCTTTCTCCTAGTGATAGTGCAGCTGTAGTAGGAGGCAATGTCCTTACATCTCAGAGAATCACCGATGTTGTATTTACTGCATTTCAGGCTTGTGCTTGTTCGCAAGGTTGTATGAATAATCTTACATTTGGAGATGACACTTTTGGGTACTATGAAACCATTGGAGGTGGAAGTGGGGCTGGTCCTACATGGGAAGGGACCAGTGGGGTACAGTGCCACATGACAAATACAAGAATGACTGATCCAGAGATATTTGAACAAAGATATCCAGTGATTCTGCACAGATTTGGACTTAGAACGAACAGCGGGGGAGATGGATTTCACAGAGGTGGTGATGGGCTTGTCAGGGAAATAGAGTTTAGGCGCCCAGTTACCGTCAGCATTCTTTCCGAGAGACGTGTCCATGCACCTAGAGGGCTGAAGGGAGGGAACGACGGTGCACGTGGTGCTAATTACATTCTAAAGAAAGATAAGCGAAAGGTTTATCTTGGTGGTAAGAATTCTGTTGAGGTGCTTCCTGGCGAAATTCTTCAGATTTTGACTCCTGGGGGTGGTGGATGGGGCTCTCCAGTGTAA

Protein sequence

>MS.gene068038.t1

MGSVTEGKLRFCIDRGGTFTDVYAEIPGHRNGIVLKLLSVDPLNYDDAPVEGIRRILEEFTGEKIPRSSKIPTEKIEWIRMGTTVATNALLERKGERIAVCVTRGFRDLLQIGNQARPSIFDLTVSKPSNLYEEVVEVEERVELVQAKEEEESLSASSPIVKGISGELVKIVKPLNEEALKLVLKNLLEKGISCLAVVLMHSYTYPQHEQQVERLALSLGFKHVSISSALSPMVRAVPRGLTASVDAYLTPVIKDYLSGFISKFEEGLSKLNVLFMQSDGGLAPESTFSGHKAILSGPAGGVVGYSQTLFGLETEKPLIGFDMGGTSTDVSRYAGSYEQVLETQIAGAIIQAPQLDINTVAAGGGSKLKFQFGAFQVGPESVGAHPGPVCYRKGGELAITDANLVLGYVIPDYFPSIFGPNEDQPLDVKSTREEFEKLAGNINAYRKNQDPSAKDMTVEEIALGFVDVANETMCRPIRQLTEMKGHETKNHALACFGGAGPQHACAIARSLGMKEVLIHKFCGILSAYGMGLANVVEEVQEPYAAVYGTESTLEASQREALLLKQVKQKLQSQGFKEENISTDTYLNLRYEGTDTAIMVKRKIVKDEIPFDYATEFVSLFQQEYGFKLQNRNIVICDVRVRGTGVTNILRPQAIEPASGSPIIEGYYKVYFGNGWQEAPLYKLEKLGYGHTMSGPAIVMNGNSTVIVEPNCRAIITKYGNIKIEIDSPVSSIKISDKVADVVQLSIFNHRFMGIAEQMGRTLQRTSISTNIKERLDFSCALFDPHGGLVANAPHVPVHLGAMSSTVRWQLNYWNDNLNEGDVLVTNHPSAGGSHLPDITVVTPVFFNGKLVFFVANRGHHAEIGGITPGSMPPFSKSILEEGAAIKAFKLVEKGVFQEEGIVKLLQFPSSDDRGTKIRGTRRIQDNLSDLQAQVAANQRGICLVLELIEQYGLETVQAYMNYVQMNAEGAVREMLKSVGRRISSESNENSVTIEEEDYMDDGSVIHLKLSIDSNKGEAIFDFGGTSAEVYGNWNAPEAVTAAAVIYCIRCLVDVDIPLNQGCLAPVKIHIPEGSFLSPSDSAAVVGGNVLTSQRITDVVFTAFQACACSQGCMNNLTFGDDTFGYYETIGGGSGAGPTWEGTSGVQCHMTNTRMTDPEIFEQRYPVILHRFGLRTNSGGDGFHRGGDGLVREIEFRRPVTVSILSERRVHAPRGLKGGNDGARGANYILKKDKRKVYLGGKNSVEVLPGEILQILTPGGGGWGSPV