Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene29136.t1 | XP_003613074.2 | 92.7 | 909 | 62 | 3 | 1 | 909 | 39 | 943 | 0.00E+00 | 1573.5 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene29136.t1 | Q9FKP5 | 47.4 | 700 | 289 | 16 | 42 | 739 | 50 | 672 | 2.0e-153 | 544.7 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene29136.t1 | G7JXP7 | 92.7 | 909 | 62 | 3 | 1 | 909 | 39 | 943 | 0.0e+00 | 1573.5 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene049159 | MS.gene29136 | 0.833725 | 4.52E-56 | -1.69E-46 |
MS.gene049435 | MS.gene29136 | 0.823659 | 1.23E-53 | -1.69E-46 |
MS.gene049501 | MS.gene29136 | 0.817943 | 2.54E-52 | -1.69E-46 |
MS.gene049850 | MS.gene29136 | 0.806376 | 8.48E-50 | -1.69E-46 |
MS.gene050237 | MS.gene29136 | 0.809452 | 1.88E-50 | -1.69E-46 |
MS.gene050442 | MS.gene29136 | 0.842838 | 2.03E-58 | -1.69E-46 |
MS.gene050586 | MS.gene29136 | 0.814596 | 1.42E-51 | -1.69E-46 |
MS.gene050762 | MS.gene29136 | 0.805793 | 1.12E-49 | -1.69E-46 |
MS.gene050763 | MS.gene29136 | 0.804537 | 2.06E-49 | -1.69E-46 |
MS.gene050807 | MS.gene29136 | 0.848522 | 5.81E-60 | -1.69E-46 |
MS.gene050808 | MS.gene29136 | 0.819976 | 8.75E-53 | -1.69E-46 |
MS.gene050815 | MS.gene29136 | 0.819222 | 1.30E-52 | -1.69E-46 |
MS.gene050844 | MS.gene29136 | 0.80888 | 2.49E-50 | -1.69E-46 |
MS.gene051180 | MS.gene29136 | 0.815376 | 9.54E-52 | -1.69E-46 |
MS.gene052020 | MS.gene29136 | 0.815896 | 7.31E-52 | -1.69E-46 |
MS.gene052323 | MS.gene29136 | 0.831392 | 1.71E-55 | -1.69E-46 |
MS.gene052516 | MS.gene29136 | 0.803773 | 2.97E-49 | -1.69E-46 |
MS.gene052665 | MS.gene29136 | 0.847538 | 1.09E-59 | -1.69E-46 |
MS.gene052856 | MS.gene29136 | 0.813437 | 2.56E-51 | -1.69E-46 |
MS.gene052858 | MS.gene29136 | 0.819301 | 1.25E-52 | -1.69E-46 |
MS.gene052860 | MS.gene29136 | 0.831621 | 1.50E-55 | -1.69E-46 |
MS.gene052863 | MS.gene29136 | 0.816917 | 4.32E-52 | -1.69E-46 |
MS.gene052896 | MS.gene29136 | 0.847584 | 1.05E-59 | -1.69E-46 |
MS.gene053008 | MS.gene29136 | 0.803407 | 3.54E-49 | -1.69E-46 |
MS.gene053085 | MS.gene29136 | 0.81365 | 2.30E-51 | -1.69E-46 |
MS.gene053221 | MS.gene29136 | 0.800941 | 1.14E-48 | -1.69E-46 |
MS.gene053630 | MS.gene29136 | 0.802779 | 4.77E-49 | -1.69E-46 |
MS.gene054139 | MS.gene29136 | 0.800856 | 1.18E-48 | -1.69E-46 |
MS.gene054379 | MS.gene29136 | 0.813177 | 2.92E-51 | -1.69E-46 |
MS.gene054467 | MS.gene29136 | 0.813632 | 2.32E-51 | -1.69E-46 |
MS.gene054472 | MS.gene29136 | 0.82314 | 1.63E-53 | -1.69E-46 |
MS.gene05462 | MS.gene29136 | 0.846581 | 1.99E-59 | -1.69E-46 |
MS.gene055465 | MS.gene29136 | 0.809823 | 1.56E-50 | -1.69E-46 |
MS.gene055466 | MS.gene29136 | 0.82802 | 1.13E-54 | -1.69E-46 |
MS.gene055468 | MS.gene29136 | 0.815283 | 1.00E-51 | -1.69E-46 |
MS.gene055469 | MS.gene29136 | 0.824345 | 8.49E-54 | -1.69E-46 |
MS.gene055512 | MS.gene29136 | 0.802097 | 6.59E-49 | -1.69E-46 |
MS.gene055608 | MS.gene29136 | 0.814465 | 1.52E-51 | -1.69E-46 |
MS.gene055623 | MS.gene29136 | 0.805895 | 1.07E-49 | -1.69E-46 |
MS.gene055711 | MS.gene29136 | 0.816957 | 4.23E-52 | -1.69E-46 |
MS.gene055818 | MS.gene29136 | 0.822816 | 1.93E-53 | -1.69E-46 |
MS.gene055926 | MS.gene29136 | 0.813204 | 2.88E-51 | -1.69E-46 |
MS.gene056069 | MS.gene29136 | -0.815343 | 9.71E-52 | -1.69E-46 |
MS.gene056173 | MS.gene29136 | 0.819551 | 1.09E-52 | -1.69E-46 |
MS.gene056553 | MS.gene29136 | 0.804024 | 2.63E-49 | -1.69E-46 |
MS.gene056589 | MS.gene29136 | 0.810675 | 1.02E-50 | -1.69E-46 |
MS.gene056760 | MS.gene29136 | 0.814727 | 1.33E-51 | -1.69E-46 |
MS.gene057200 | MS.gene29136 | 0.824318 | 8.61E-54 | -1.69E-46 |
MS.gene057360 | MS.gene29136 | 0.809574 | 1.77E-50 | -1.69E-46 |
MS.gene057693 | MS.gene29136 | 0.81437 | 1.59E-51 | -1.69E-46 |
MS.gene057869 | MS.gene29136 | 0.838833 | 2.27E-57 | -1.69E-46 |
MS.gene057915 | MS.gene29136 | 0.818172 | 2.25E-52 | -1.69E-46 |
MS.gene058595 | MS.gene29136 | 0.802644 | 5.09E-49 | -1.69E-46 |
MS.gene058625 | MS.gene29136 | 0.816959 | 4.23E-52 | -1.69E-46 |
MS.gene058636 | MS.gene29136 | 0.82452 | 7.72E-54 | -1.69E-46 |
MS.gene059713 | MS.gene29136 | 0.811211 | 7.84E-51 | -1.69E-46 |
MS.gene059725 | MS.gene29136 | 0.840309 | 9.40E-58 | -1.69E-46 |
MS.gene059842 | MS.gene29136 | 0.810319 | 1.22E-50 | -1.69E-46 |
MS.gene059937 | MS.gene29136 | 0.819903 | 9.09E-53 | -1.69E-46 |
MS.gene060137 | MS.gene29136 | -0.825856 | 3.73E-54 | -1.69E-46 |
MS.gene060322 | MS.gene29136 | 0.819767 | 9.77E-53 | -1.69E-46 |
MS.gene06052 | MS.gene29136 | 0.818176 | 2.25E-52 | -1.69E-46 |
MS.gene060587 | MS.gene29136 | 0.808788 | 2.61E-50 | -1.69E-46 |
MS.gene060634 | MS.gene29136 | -0.804712 | 1.89E-49 | -1.69E-46 |
MS.gene060683 | MS.gene29136 | 0.860445 | 2.06E-63 | -1.69E-46 |
MS.gene060685 | MS.gene29136 | 0.864762 | 9.63E-65 | -1.69E-46 |
MS.gene060802 | MS.gene29136 | 0.809507 | 1.83E-50 | -1.69E-46 |
MS.gene060803 | MS.gene29136 | 0.841794 | 3.83E-58 | -1.69E-46 |
MS.gene060918 | MS.gene29136 | 0.818414 | 1.99E-52 | -1.69E-46 |
MS.gene060998 | MS.gene29136 | 0.821248 | 4.47E-53 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene29136.t1 | MTR_5g032380 | 96.260 | 909 | 30 | 3 | 1 | 909 | 39 | 943 | 0.0 | 1812 |
MS.gene29136.t1 | MTR_3g100480 | 56.238 | 505 | 179 | 8 | 335 | 820 | 522 | 1003 | 4.16e-173 | 532 |
MS.gene29136.t1 | MTR_3g100480 | 45.679 | 81 | 37 | 1 | 41 | 121 | 68 | 141 | 6.74e-15 | 80.1 |
MS.gene29136.t1 | MTR_3g100480 | 53.084 | 535 | 179 | 9 | 335 | 820 | 522 | 1033 | 2.22e-166 | 516 |
MS.gene29136.t1 | MTR_3g100480 | 45.679 | 81 | 37 | 1 | 41 | 121 | 68 | 141 | 6.48e-15 | 80.1 |
MS.gene29136.t1 | MTR_5g066000 | 51.575 | 508 | 202 | 7 | 329 | 814 | 472 | 957 | 2.61e-161 | 499 |
MS.gene29136.t1 | MTR_5g066000 | 61.111 | 54 | 20 | 1 | 48 | 101 | 109 | 161 | 2.09e-15 | 81.6 |
MS.gene29136.t1 | MTR_2g071620 | 48.140 | 457 | 223 | 6 | 367 | 810 | 442 | 897 | 3.70e-134 | 426 |
MS.gene29136.t1 | MTR_2g071620 | 61.905 | 42 | 16 | 0 | 47 | 88 | 85 | 126 | 8.01e-12 | 69.7 |
MS.gene29136.t1 | MTR_1g014680 | 52.247 | 356 | 164 | 3 | 370 | 721 | 162 | 515 | 4.70e-123 | 393 |
MS.gene29136.t1 | MTR_4g130940 | 39.739 | 307 | 176 | 7 | 390 | 691 | 93 | 395 | 2.18e-61 | 224 |
MS.gene29136.t1 | MTR_4g130940 | 39.739 | 307 | 176 | 7 | 390 | 691 | 93 | 395 | 4.95e-61 | 223 |
MS.gene29136.t1 | MTR_2g070390 | 37.267 | 322 | 191 | 7 | 388 | 702 | 21 | 338 | 5.07e-58 | 211 |
MS.gene29136.t1 | MTR_6g022290 | 35.897 | 312 | 190 | 7 | 384 | 692 | 24 | 328 | 5.97e-52 | 192 |
MS.gene29136.t1 | MTR_6g022310 | 35.599 | 309 | 189 | 7 | 387 | 692 | 125 | 426 | 5.14e-50 | 188 |
MS.gene29136.t1 | MTR_6g022300 | 34.505 | 313 | 195 | 7 | 383 | 692 | 61 | 366 | 3.15e-49 | 185 |
MS.gene29136.t1 | MTR_5g030360 | 34.304 | 309 | 184 | 8 | 390 | 692 | 155 | 450 | 1.63e-47 | 181 |
MS.gene29136.t1 | MTR_8g067060 | 31.250 | 320 | 200 | 8 | 390 | 703 | 204 | 509 | 3.63e-42 | 163 |
MS.gene29136.t1 | MTR_5g430360 | 33.559 | 295 | 177 | 8 | 404 | 692 | 1 | 282 | 4.09e-42 | 162 |
MS.gene29136.t1 | MTR_8g471100 | 31.250 | 320 | 200 | 8 | 390 | 703 | 213 | 518 | 4.27e-42 | 163 |
MS.gene29136.t1 | MTR_0279s0020 | 30.492 | 305 | 191 | 7 | 390 | 691 | 6 | 292 | 1.72e-34 | 135 |
MS.gene29136.t1 | MTR_8g064910 | 31.210 | 314 | 190 | 11 | 390 | 691 | 55 | 354 | 3.14e-34 | 136 |
MS.gene29136.t1 | MTR_1g014260 | 27.762 | 353 | 198 | 11 | 390 | 693 | 182 | 526 | 4.10e-34 | 140 |
MS.gene29136.t1 | MTR_0279s0020 | 29.904 | 311 | 197 | 8 | 396 | 703 | 3 | 295 | 2.65e-33 | 130 |
MS.gene29136.t1 | MTR_4g115880 | 25.581 | 387 | 199 | 9 | 390 | 691 | 198 | 580 | 3.69e-30 | 127 |
MS.gene29136.t1 | MTR_3g087140 | 28.528 | 326 | 188 | 9 | 389 | 679 | 23 | 338 | 2.99e-28 | 117 |
MS.gene29136.t1 | MTR_8g090190 | 28.173 | 323 | 193 | 8 | 389 | 679 | 23 | 338 | 1.22e-27 | 116 |
MS.gene29136.t1 | MTR_4g111860 | 27.812 | 320 | 196 | 11 | 390 | 691 | 88 | 390 | 1.95e-23 | 104 |
MS.gene29136.t1 | MTR_2g087710 | 37.500 | 152 | 89 | 3 | 547 | 695 | 717 | 865 | 6.17e-20 | 96.3 |
MS.gene29136.t1 | MTR_1g010040 | 27.703 | 296 | 183 | 11 | 388 | 671 | 106 | 382 | 9.43e-18 | 89.4 |
MS.gene29136.t1 | MTR_1g010040 | 27.703 | 296 | 183 | 11 | 388 | 671 | 106 | 382 | 9.99e-18 | 89.0 |
MS.gene29136.t1 | MTR_3g108660 | 28.000 | 300 | 177 | 11 | 388 | 671 | 106 | 382 | 1.82e-16 | 85.1 |
MS.gene29136.t1 | MTR_1g077980 | 36.913 | 149 | 87 | 4 | 547 | 691 | 765 | 910 | 1.94e-16 | 84.7 |
MS.gene29136.t1 | MTR_3g108660 | 28.000 | 300 | 177 | 11 | 388 | 671 | 106 | 382 | 2.44e-16 | 84.7 |
MS.gene29136.t1 | MTR_7g106570 | 32.704 | 159 | 98 | 5 | 547 | 699 | 742 | 897 | 2.30e-14 | 78.2 |
MS.gene29136.t1 | MTR_5g086700 | 23.978 | 367 | 209 | 16 | 375 | 695 | 189 | 531 | 6.82e-13 | 73.6 |
MS.gene29136.t1 | MTR_5g086700 | 23.978 | 367 | 209 | 16 | 375 | 695 | 189 | 531 | 7.31e-13 | 73.2 |
MS.gene29136.t1 | MTR_7g088760 | 32.667 | 150 | 93 | 5 | 547 | 691 | 754 | 900 | 1.51e-12 | 72.0 |
MS.gene29136.t1 | MTR_7g088760 | 32.667 | 150 | 93 | 5 | 547 | 691 | 771 | 917 | 1.58e-12 | 72.0 |
MS.gene29136.t1 | MTR_8g447290 | 38.554 | 83 | 50 | 1 | 18 | 100 | 147 | 228 | 1.60e-11 | 68.2 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene29136.t1 | AT5G65450 | 45.652 | 782 | 310 | 19 | 42 | 820 | 50 | 719 | 0.0 | 578 |
MS.gene29136.t1 | AT5G65450 | 45.652 | 782 | 310 | 19 | 42 | 820 | 69 | 738 | 0.0 | 577 |
MS.gene29136.t1 | AT4G24560 | 48.269 | 491 | 233 | 7 | 337 | 823 | 491 | 964 | 6.68e-142 | 447 |
MS.gene29136.t1 | AT4G24560 | 71.429 | 49 | 14 | 0 | 41 | 89 | 66 | 114 | 1.95e-17 | 88.2 |
MS.gene29136.t1 | AT2G24640 | 53.913 | 345 | 156 | 1 | 355 | 696 | 140 | 484 | 5.56e-130 | 406 |
MS.gene29136.t1 | AT4G31670 | 53.963 | 328 | 148 | 1 | 367 | 691 | 146 | 473 | 3.28e-125 | 392 |
MS.gene29136.t1 | AT2G24640 | 55.732 | 314 | 136 | 1 | 386 | 696 | 1 | 314 | 4.42e-125 | 387 |
MS.gene29136.t1 | AT1G17110 | 44.699 | 481 | 215 | 8 | 338 | 810 | 388 | 825 | 1.44e-124 | 399 |
MS.gene29136.t1 | AT1G17110 | 58.824 | 51 | 21 | 0 | 38 | 88 | 119 | 169 | 2.53e-14 | 78.2 |
MS.gene29136.t1 | AT1G17110 | 46.102 | 449 | 194 | 6 | 367 | 810 | 416 | 821 | 2.35e-124 | 399 |
MS.gene29136.t1 | AT1G17110 | 58.824 | 51 | 21 | 0 | 38 | 88 | 119 | 169 | 2.46e-14 | 78.2 |
MS.gene29136.t1 | AT1G17110 | 46.102 | 449 | 194 | 6 | 367 | 810 | 416 | 821 | 2.35e-124 | 399 |
MS.gene29136.t1 | AT1G17110 | 58.824 | 51 | 21 | 0 | 38 | 88 | 119 | 169 | 2.46e-14 | 78.2 |
MS.gene29136.t1 | AT5G57990 | 37.082 | 329 | 195 | 7 | 390 | 710 | 108 | 432 | 1.49e-61 | 225 |
MS.gene29136.t1 | AT3G14400 | 36.228 | 334 | 196 | 7 | 388 | 707 | 23 | 353 | 1.40e-55 | 204 |
MS.gene29136.t1 | AT5G46740 | 32.492 | 317 | 187 | 11 | 390 | 691 | 164 | 468 | 5.46e-36 | 146 |
MS.gene29136.t1 | AT4G17895 | 31.447 | 318 | 201 | 8 | 390 | 700 | 177 | 484 | 8.15e-36 | 145 |
MS.gene29136.t1 | AT5G46740 | 36.000 | 225 | 134 | 7 | 472 | 691 | 40 | 259 | 1.12e-30 | 128 |
MS.gene29136.t1 | AT2G22310 | 27.988 | 343 | 199 | 9 | 389 | 689 | 23 | 359 | 1.98e-29 | 121 |
MS.gene29136.t1 | AT5G10790 | 27.100 | 369 | 199 | 12 | 387 | 693 | 43 | 403 | 2.27e-28 | 119 |
MS.gene29136.t1 | AT4G39910 | 28.528 | 326 | 192 | 8 | 389 | 679 | 23 | 342 | 4.28e-28 | 117 |
MS.gene29136.t1 | AT5G10790 | 27.100 | 369 | 199 | 12 | 387 | 693 | 172 | 532 | 1.35e-27 | 119 |
MS.gene29136.t1 | AT2G22310 | 27.273 | 308 | 188 | 8 | 402 | 679 | 4 | 305 | 6.17e-23 | 101 |
MS.gene29136.t1 | AT2G22310 | 28.374 | 289 | 161 | 8 | 441 | 689 | 40 | 322 | 3.79e-22 | 99.0 |
MS.gene29136.t1 | AT3G49600 | 27.869 | 305 | 170 | 12 | 388 | 671 | 105 | 380 | 2.98e-18 | 90.9 |
MS.gene29136.t1 | AT3G49600 | 27.869 | 305 | 170 | 12 | 388 | 671 | 105 | 380 | 3.04e-18 | 90.9 |
MS.gene29136.t1 | AT3G49600 | 27.869 | 305 | 170 | 12 | 388 | 671 | 105 | 380 | 3.04e-18 | 90.9 |
MS.gene29136.t1 | AT4G10590 | 37.584 | 149 | 86 | 4 | 547 | 691 | 748 | 893 | 1.00e-16 | 85.9 |
MS.gene29136.t1 | AT4G10590 | 37.584 | 149 | 86 | 4 | 547 | 691 | 748 | 893 | 1.00e-16 | 85.9 |
MS.gene29136.t1 | AT4G10590 | 37.584 | 149 | 86 | 4 | 547 | 691 | 748 | 893 | 1.00e-16 | 85.9 |
MS.gene29136.t1 | AT4G10590 | 37.584 | 149 | 86 | 4 | 547 | 691 | 748 | 893 | 1.00e-16 | 85.9 |
MS.gene29136.t1 | AT4G30890 | 26.316 | 361 | 203 | 15 | 388 | 691 | 196 | 550 | 1.10e-16 | 84.7 |
MS.gene29136.t1 | AT4G30890 | 26.316 | 361 | 203 | 15 | 388 | 691 | 196 | 550 | 1.10e-16 | 84.7 |
MS.gene29136.t1 | AT4G30890 | 26.316 | 361 | 203 | 15 | 388 | 691 | 196 | 550 | 1.10e-16 | 84.7 |
MS.gene29136.t1 | AT5G22030 | 35.570 | 149 | 89 | 4 | 547 | 691 | 723 | 868 | 2.52e-16 | 84.3 |
MS.gene29136.t1 | AT5G22030 | 35.570 | 149 | 89 | 4 | 547 | 691 | 765 | 910 | 2.68e-16 | 84.3 |
MS.gene29136.t1 | AT4G10570 | 36.242 | 149 | 88 | 4 | 547 | 691 | 749 | 894 | 2.05e-15 | 81.6 |
MS.gene29136.t1 | AT2G32780 | 36.364 | 132 | 63 | 4 | 578 | 691 | 954 | 1082 | 1.53e-14 | 79.0 |
MS.gene29136.t1 | AT1G32850 | 34.899 | 149 | 90 | 4 | 547 | 691 | 734 | 879 | 2.16e-14 | 78.2 |
MS.gene29136.t1 | AT1G04860 | 38.281 | 128 | 62 | 4 | 578 | 691 | 832 | 956 | 2.81e-14 | 77.8 |
MS.gene29136.t1 | AT2G40930 | 34.868 | 152 | 91 | 5 | 547 | 693 | 769 | 917 | 1.49e-13 | 75.5 |
MS.gene29136.t1 | AT2G40930 | 34.868 | 152 | 91 | 5 | 547 | 693 | 769 | 917 | 1.49e-13 | 75.5 |
Find 174 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
ATTTACAGCACCTGAAATTT+TGG | 0.137740 | 5.3:-21495910 | MS.gene29136:CDS |
AATACGATTGTAAGAATATT+TGG | 0.152865 | 5.3:+21493159 | None:intergenic |
TTATCTTTATCCAAAATTTC+AGG | 0.208390 | 5.3:+21495900 | None:intergenic |
CTTACTGAACCCAGGGGTTT+TGG | 0.224633 | 5.3:+21491889 | None:intergenic |
CAGTATTGTCAACTTCTTCT+TGG | 0.226243 | 5.3:+21493188 | None:intergenic |
CACTTAGAAGTGTCTGTTAT+TGG | 0.226390 | 5.3:+21497857 | None:intergenic |
TAGTTGAATCTCCATTCTTC+TGG | 0.247696 | 5.3:+21491682 | None:intergenic |
ACTCTCATTGGATACACTTT+TGG | 0.259420 | 5.3:-21496189 | MS.gene29136:CDS |
AATCGTATTAAAACGATTTC+AGG | 0.276311 | 5.3:-21493145 | MS.gene29136:intron |
ACAAGATACTACTGCTTCTA+TGG | 0.281969 | 5.3:-21499548 | MS.gene29136:CDS |
CTTTATCTTCCGAGTCTTGC+TGG | 0.282680 | 5.3:+21491410 | None:intergenic |
TATGTGTCGGATTTAGCTTT+TGG | 0.327935 | 5.3:+21497944 | None:intergenic |
GGAACAGAATTTGGTCTTCA+TGG | 0.328708 | 5.3:-21498369 | MS.gene29136:intron |
TCAGTATCAGGAACAGAATT+TGG | 0.328828 | 5.3:-21498378 | MS.gene29136:CDS |
ACTGCATAAAGACTGTAAAA+TGG | 0.330409 | 5.3:+21492921 | None:intergenic |
GTTGCACTCCTCATTTCCTT+TGG | 0.334119 | 5.3:-21498074 | MS.gene29136:CDS |
TCCTTTCTTCCACTCATGTA+TGG | 0.349135 | 5.3:+21492951 | None:intergenic |
TGATGGAGATATTGAAACTT+TGG | 0.357074 | 5.3:-21495949 | MS.gene29136:CDS |
TCCAATTGGCATGGCCAGTA+TGG | 0.357216 | 5.3:-21491517 | MS.gene29136:CDS |
ACATCTAGGGCATCAGTATC+AGG | 0.357745 | 5.3:-21498390 | MS.gene29136:CDS |
TACTGCTTCTATGGCTCATA+TGG | 0.359546 | 5.3:-21499539 | MS.gene29136:CDS |
ACTTCTCCACTTTCTCCAAT+TGG | 0.366435 | 5.3:-21496474 | MS.gene29136:CDS |
CTTGAACTTTCCAGTTGAAA+AGG | 0.367423 | 5.3:+21491855 | None:intergenic |
GGAGTCATATCCAGGACTTC+AGG | 0.367763 | 5.3:+21492972 | None:intergenic |
GCTGCAAAGCTGTTAGATAT+TGG | 0.368655 | 5.3:-21499375 | MS.gene29136:intron |
TGGAGGATATCTACGATCTA+AGG | 0.370301 | 5.3:-21496169 | MS.gene29136:intron |
CACAAGATTGGAAGTCATCT+TGG | 0.379158 | 5.3:-21496435 | MS.gene29136:CDS |
ACCTGTTCCCACAGTTTGTA+AGG | 0.383832 | 5.3:+21497177 | None:intergenic |
TTATGCAGTGGTCGTCCATT+TGG | 0.385617 | 5.3:-21492907 | MS.gene29136:CDS |
GATCTTACTGTTGAGATTGA+TGG | 0.398304 | 5.3:-21495966 | MS.gene29136:CDS |
GCCTTACAAACTGTGGGAAC+AGG | 0.403690 | 5.3:-21497178 | MS.gene29136:intron |
CTTCTCCACTTTCTCCAATT+GGG | 0.405205 | 5.3:-21496473 | MS.gene29136:CDS |
ACAGAAGAAACAACTCTCAT+TGG | 0.412098 | 5.3:-21496201 | MS.gene29136:CDS |
GAGAGAAGAGGTTATGAGGT+TGG | 0.414269 | 5.3:-21499572 | None:intergenic |
AGGGATCATCAACGGCATTC+CGG | 0.418215 | 5.3:+21491725 | None:intergenic |
TCCATACTGGCCATGCCAAT+TGG | 0.421815 | 5.3:+21491516 | None:intergenic |
GTTCCTGTTTCAGTTTCTCA+TGG | 0.426039 | 5.3:-21499445 | MS.gene29136:CDS |
ACATTCAAGGAGAATGGTTC+AGG | 0.428022 | 5.3:-21492836 | MS.gene29136:CDS |
CTTCAACAAAATGTTCGTAA+TGG | 0.428992 | 5.3:-21497614 | MS.gene29136:CDS |
CTATCGGGGAAGAAATACTA+TGG | 0.429666 | 5.3:-21491662 | MS.gene29136:CDS |
CAAGAAGAAGTTGACAATAC+TGG | 0.433670 | 5.3:-21493187 | MS.gene29136:CDS |
TCTTCACATAACAAACATAA+TGG | 0.436838 | 5.3:+21492859 | None:intergenic |
ATCTTAGATAATATCCCAAT+TGG | 0.440970 | 5.3:+21496459 | None:intergenic |
ATCTGTATGCAAGGTATCAT+AGG | 0.441162 | 5.3:+21491465 | None:intergenic |
CGAGCACAACGCATGGTAGT+AGG | 0.445877 | 5.3:+21499397 | None:intergenic |
GATAAAGTGCTTAAGGTGCC+TGG | 0.447779 | 5.3:-21496018 | MS.gene29136:CDS |
AAGGTGAAACTATTTCCCTT+TGG | 0.448054 | 5.3:-21497200 | MS.gene29136:CDS |
CAGGCACTCTCCAAAACCCC+TGG | 0.448154 | 5.3:-21491899 | MS.gene29136:CDS |
GAAACTTTGGAGGAGGCTCT+TGG | 0.449157 | 5.3:-21495936 | MS.gene29136:CDS |
TTGGTGAGGCAGGGTCCAAT+TGG | 0.452714 | 5.3:-21491531 | MS.gene29136:CDS |
AAATGCAGATAAAGTGCTTA+AGG | 0.454777 | 5.3:-21496025 | MS.gene29136:intron |
GAGTCATATCCAGGACTTCA+GGG | 0.463677 | 5.3:+21492973 | None:intergenic |
TTCTTAACTTCAATATTGAC+AGG | 0.465879 | 5.3:+21498040 | None:intergenic |
AATATCCCAATTGGAGAAAG+TGG | 0.468182 | 5.3:+21496468 | None:intergenic |
TCATGATGAGGCATCAAAGT+TGG | 0.471953 | 5.3:-21497921 | MS.gene29136:CDS |
TCCCTCCGTACAGCAGAAGC+AGG | 0.476218 | 5.3:-21491761 | MS.gene29136:CDS |
TTTAGATTCCAAAGGAAATG+AGG | 0.478331 | 5.3:+21498066 | None:intergenic |
AGAGTTGTTTCTTCTGTCAA+AGG | 0.480437 | 5.3:+21496207 | None:intergenic |
CTAATTCAGAAGGCAAAAGA+AGG | 0.480521 | 5.3:-21496498 | MS.gene29136:CDS |
AGAATGGAGATTCAACTATC+GGG | 0.481143 | 5.3:-21491677 | MS.gene29136:CDS |
TCAAATGTCTTCAACTACTA+AGG | 0.483543 | 5.3:-21497717 | MS.gene29136:CDS |
TGTTATGTGAAGAACATTCA+AGG | 0.484307 | 5.3:-21492849 | MS.gene29136:CDS |
CATGATGAGGCATCAAAGTT+GGG | 0.487207 | 5.3:-21497920 | MS.gene29136:CDS |
TCTAACATCTGTTGAAAATG+AGG | 0.487607 | 5.3:-21497528 | MS.gene29136:intron |
TACCCATGAGAAACTGAAAC+AGG | 0.487847 | 5.3:+21499442 | None:intergenic |
AGTTCAGTTCCCTGAAGTCC+TGG | 0.488513 | 5.3:-21492982 | MS.gene29136:CDS |
GGAAGAAGATGCAGCCGAGT+TGG | 0.490012 | 5.3:+21491486 | None:intergenic |
GTATACAGATTCATTGCTAA+AGG | 0.490489 | 5.3:+21491705 | None:intergenic |
TCTCCGTGCTTCTTTGTACC+TGG | 0.491522 | 5.3:+21497763 | None:intergenic |
AGTTCCACGAAAAGTTCATA+AGG | 0.491793 | 5.3:+21497236 | None:intergenic |
CAGTGGACAATGATGCTGAT+AGG | 0.494139 | 5.3:-21491438 | MS.gene29136:CDS |
TATACAGATTCATTGCTAAA+GGG | 0.498071 | 5.3:+21491706 | None:intergenic |
ATAATAAGTATAATTGTGGC+AGG | 0.498980 | 5.3:-21495881 | MS.gene29136:intron |
ACGACGAGAATGTTACATCT+AGG | 0.499991 | 5.3:-21498404 | MS.gene29136:CDS |
AATCTGTATACCCAGAAGAA+TGG | 0.500875 | 5.3:-21491693 | MS.gene29136:CDS |
TGGAGATATTGAAACTTTGG+AGG | 0.501477 | 5.3:-21495946 | MS.gene29136:CDS |
TCATGTATGGAGTCATATCC+AGG | 0.504692 | 5.3:+21492964 | None:intergenic |
AGTTGAATCTCCATTCTTCT+GGG | 0.506322 | 5.3:+21491683 | None:intergenic |
TTCCTGTTTCAGTTTCTCAT+GGG | 0.506577 | 5.3:-21499444 | MS.gene29136:CDS |
AAGAATGGAGATTCAACTAT+CGG | 0.508547 | 5.3:-21491678 | MS.gene29136:CDS |
CCACAGTTTGTAAGGCCAAA+GGG | 0.509994 | 5.3:+21497185 | None:intergenic |
TTATCTAAGATACACAAGAT+TGG | 0.510095 | 5.3:-21496447 | MS.gene29136:CDS |
ATAAAGTGCTTAAGGTGCCT+GGG | 0.510769 | 5.3:-21496017 | MS.gene29136:CDS |
CCCTGCTTCTGCTGTACGGA+GGG | 0.511074 | 5.3:+21491760 | None:intergenic |
CCCTTTGGCCTTACAAACTG+TGG | 0.511138 | 5.3:-21497185 | MS.gene29136:CDS |
TAATGCAGCACTCCAATGCT+TGG | 0.511611 | 5.3:-21496705 | MS.gene29136:CDS |
TGAAGAACATTCAAGGAGAA+TGG | 0.514909 | 5.3:-21492842 | MS.gene29136:CDS |
TCCATACATGAGTGGAAGAA+AGG | 0.515325 | 5.3:-21492952 | MS.gene29136:CDS |
GTCGTTGACCTCCCTGGTGG+TGG | 0.517256 | 5.3:+21498422 | None:intergenic |
AAGCATTCATGATATCCAAA+TGG | 0.518832 | 5.3:+21492892 | None:intergenic |
GGTTCAGGACTGATGACAGC+AGG | 0.519650 | 5.3:-21492821 | MS.gene29136:CDS |
GCTGAGTATACGCCAAGCAT+TGG | 0.523037 | 5.3:+21496693 | None:intergenic |
AAAGGAAATCATGTTAATGT+TGG | 0.523088 | 5.3:-21498256 | MS.gene29136:CDS |
CCTTTGGCCTTACAAACTGT+GGG | 0.525061 | 5.3:-21497184 | MS.gene29136:CDS |
ATTCTCGTCGTTGACCTCCC+TGG | 0.528198 | 5.3:+21498416 | None:intergenic |
AAGACTCTTGACAGTTCGAC+AGG | 0.528367 | 5.3:+21492068 | None:intergenic |
CGTCTTAGAAACAGCAGGAA+TGG | 0.529122 | 5.3:+21491816 | None:intergenic |
TTGGAAGTCATCTTGGACAT+GGG | 0.529236 | 5.3:-21496428 | MS.gene29136:CDS |
AAAGATAATAAGTATAATTG+TGG | 0.535772 | 5.3:-21495885 | MS.gene29136:CDS |
CTGTCCCTGCTTCTGCTGTA+CGG | 0.536146 | 5.3:+21491756 | None:intergenic |
CACTGAGAAATCTGTATGCA+AGG | 0.542434 | 5.3:+21491456 | None:intergenic |
TTAGCAGTATTATCACTGAC+AGG | 0.543034 | 5.3:+21498136 | None:intergenic |
AGAATCAGCATTTGTAGCCA+TGG | 0.544421 | 5.3:+21491783 | None:intergenic |
ATCAGTATTTGAATTACTCA+AGG | 0.546719 | 5.3:+21497820 | None:intergenic |
CGACGAGAATGTTACATCTA+GGG | 0.549584 | 5.3:-21498403 | MS.gene29136:CDS |
AGTTGGAAGAAATTCCATAC+TGG | 0.550381 | 5.3:+21491503 | None:intergenic |
GTAAGTGTCAAATTAGTCAC+TGG | 0.552713 | 5.3:-21498482 | MS.gene29136:CDS |
CACAGTTCCGTCGTTGTCGG+TGG | 0.555570 | 5.3:+21498096 | None:intergenic |
GGTACTTGCATCGTTTCGAA+TGG | 0.557171 | 5.3:+21496642 | None:intergenic |
CAACACAGTTCCGTCGTTGT+CGG | 0.557421 | 5.3:+21498093 | None:intergenic |
CCCACAGTTTGTAAGGCCAA+AGG | 0.560807 | 5.3:+21497184 | None:intergenic |
TAAGACGCGGTCGAATTCCA+TGG | 0.561132 | 5.3:-21491800 | MS.gene29136:CDS |
GTCCTTCGATTACCACCACC+AGG | 0.562640 | 5.3:-21498434 | MS.gene29136:CDS |
CATACATGCTTCTTTATGCA+AGG | 0.567312 | 5.3:-21492034 | MS.gene29136:intron |
ATTGCTACTTACTGAACCCA+GGG | 0.567598 | 5.3:+21491882 | None:intergenic |
TAACAGACACTTCTAAGTGC+AGG | 0.568492 | 5.3:-21497853 | MS.gene29136:CDS |
CAAATTAGTCACTGGAGACA+AGG | 0.573340 | 5.3:-21498474 | MS.gene29136:CDS |
TGAGAGGTATGAGAGAATGA+TGG | 0.574311 | 5.3:-21495988 | MS.gene29136:CDS |
TATGCAATATATTTGTCTCA+AGG | 0.576773 | 5.3:-21496247 | MS.gene29136:CDS |
GAGGCAGGGTCCAATTGGCA+TGG | 0.577228 | 5.3:-21491526 | MS.gene29136:CDS |
TTTCAACTGGAAAGTTCAAG+AGG | 0.577233 | 5.3:-21491852 | MS.gene29136:CDS |
GTTTGAATATCTAATTCAGA+AGG | 0.577524 | 5.3:-21496508 | MS.gene29136:CDS |
AGCAGGGACAGCATTCTCAC+CGG | 0.579039 | 5.3:-21491744 | MS.gene29136:CDS |
AGCAACAGAAGCATTAATGC+TGG | 0.579662 | 5.3:+21498213 | None:intergenic |
AGATATTGAAACTTTGGAGG+AGG | 0.580830 | 5.3:-21495943 | MS.gene29136:CDS |
AGCAACACTACTGATGAGAC+TGG | 0.581283 | 5.3:-21497983 | MS.gene29136:CDS |
CATTGCTACTTACTGAACCC+AGG | 0.583614 | 5.3:+21491881 | None:intergenic |
GTATTTGAATTACTCAAGGA+AGG | 0.584094 | 5.3:+21497824 | None:intergenic |
TATATTTGTCTCAAGGAAGC+CGG | 0.586904 | 5.3:-21496240 | MS.gene29136:CDS |
GTTCTCAATAGGTCAGAAGA+GGG | 0.588977 | 5.3:-21496550 | MS.gene29136:intron |
GACCGCGTCTTAGAAACAGC+AGG | 0.590979 | 5.3:+21491811 | None:intergenic |
CATACCTCTCAGATTTCCCC+AGG | 0.592897 | 5.3:+21496000 | None:intergenic |
TGGAAGAATCACATTTGTCC+AGG | 0.593320 | 5.3:-21497781 | MS.gene29136:CDS |
ATTGGAAGTCATCTTGGACA+TGG | 0.593636 | 5.3:-21496429 | MS.gene29136:CDS |
CAATAGGTCAGAAGAGGGGA+TGG | 0.594667 | 5.3:-21496545 | MS.gene29136:intron |
TCATCTTGGACATGGGAGAG+AGG | 0.596485 | 5.3:-21496421 | MS.gene29136:CDS |
TAGGAGGCTCCAGCAAGACT+CGG | 0.596936 | 5.3:-21491419 | MS.gene29136:CDS |
GTATGGAATTTCTTCCAACT+CGG | 0.603183 | 5.3:-21491500 | MS.gene29136:CDS |
AGGCACTCTCCAAAACCCCT+GGG | 0.603241 | 5.3:-21491898 | MS.gene29136:CDS |
TACTACAAGTACAAAGGACT+CGG | 0.604089 | 5.3:-21491584 | MS.gene29136:CDS |
TAATTCAGAAGGCAAAAGAA+GGG | 0.604303 | 5.3:-21496497 | MS.gene29136:CDS |
TCCCTGGTGGTGGTAATCGA+AGG | 0.605233 | 5.3:+21498432 | None:intergenic |
TGTTCTCAATAGGTCAGAAG+AGG | 0.607331 | 5.3:-21496551 | MS.gene29136:intron |
TCCCTGCTTCTGCTGTACGG+AGG | 0.611151 | 5.3:+21491759 | None:intergenic |
TTTGCAGCGAGCACAACGCA+TGG | 0.613380 | 5.3:+21499390 | None:intergenic |
TGGACAATGATGCTGATAGG+AGG | 0.625036 | 5.3:-21491435 | MS.gene29136:CDS |
AATGTCTTCAACTACTAAGG+AGG | 0.633333 | 5.3:-21497714 | MS.gene29136:CDS |
GGAACTTTATTGTTATGACA+AGG | 0.634679 | 5.3:-21497219 | MS.gene29136:CDS |
GAATGGAGATTCAACTATCG+GGG | 0.641373 | 5.3:-21491676 | MS.gene29136:CDS |
ATCCGACACATATCATGATG+AGG | 0.641909 | 5.3:-21497933 | MS.gene29136:CDS |
CCCTCCGTACAGCAGAAGCA+GGG | 0.643033 | 5.3:-21491760 | MS.gene29136:CDS |
TTCCTGCTGTTTCTAAGACG+CGG | 0.645116 | 5.3:-21491813 | MS.gene29136:CDS |
TCACTGGAGACAAGGTCACA+AGG | 0.645616 | 5.3:-21498466 | MS.gene29136:CDS |
GTAGCTTCCACCGACAACGA+CGG | 0.646206 | 5.3:-21498103 | MS.gene29136:CDS |
ATTGCTAAAGGGATCATCAA+CGG | 0.647422 | 5.3:+21491717 | None:intergenic |
CTCGTCGTTGACCTCCCTGG+TGG | 0.656639 | 5.3:+21498419 | None:intergenic |
ATGAGTCATGAGTCTCGTGA+CGG | 0.661809 | 5.3:+21498167 | None:intergenic |
GTTCAGGACTGATGACAGCA+GGG | 0.663226 | 5.3:-21492820 | MS.gene29136:intron |
GATGAGGCATCAAAGTTGGG+TGG | 0.663974 | 5.3:-21497917 | MS.gene29136:CDS |
TAAAGTGCTTAAGGTGCCTG+GGG | 0.666066 | 5.3:-21496016 | MS.gene29136:CDS |
TGCCTCATCATGATATGTGT+CGG | 0.666217 | 5.3:+21497931 | None:intergenic |
TGTCCAGGTACAAAGAAGCA+CGG | 0.666419 | 5.3:-21497766 | MS.gene29136:CDS |
GATATGACTCCATACATGAG+TGG | 0.668813 | 5.3:-21492960 | MS.gene29136:CDS |
TTGCAGTACTACAAGTACAA+AGG | 0.669235 | 5.3:-21491590 | MS.gene29136:CDS |
TCGGGGAAGAAATACTATGG+TGG | 0.679997 | 5.3:-21491659 | MS.gene29136:CDS |
TGTCAAAGGACTTGATACAC+CGG | 0.686828 | 5.3:+21496221 | None:intergenic |
TTCTCAATAGGTCAGAAGAG+GGG | 0.698985 | 5.3:-21496549 | MS.gene29136:intron |
GAAGAAGTTGACAATACTGG+AGG | 0.702243 | 5.3:-21493184 | MS.gene29136:CDS |
TTCGATTACCACCACCAGGG+AGG | 0.721514 | 5.3:-21498430 | MS.gene29136:CDS |
TGATGTTCTAGCTGACGACG+TGG | 0.722306 | 5.3:-21497801 | MS.gene29136:CDS |
TCCTTCGATTACCACCACCA+GGG | 0.727082 | 5.3:-21498433 | MS.gene29136:CDS |
TTGCTACTTACTGAACCCAG+GGG | 0.730240 | 5.3:+21491883 | None:intergenic |
GGTGCCTGGGGAAATCTGAG+AGG | 0.732683 | 5.3:-21496004 | MS.gene29136:CDS |
CTTGCATACAGATTTCTCAG+TGG | 0.734461 | 5.3:-21491455 | MS.gene29136:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr5.3 | gene | 21491261 | 21499581 | 21491261 | ID=MS.gene29136 |
chr5.3 | mRNA | 21491261 | 21499581 | 21491261 | ID=MS.gene29136.t1;Parent=MS.gene29136 |
chr5.3 | exon | 21499376 | 21499581 | 21499376 | ID=MS.gene29136.t1.exon1;Parent=MS.gene29136.t1 |
chr5.3 | CDS | 21499376 | 21499581 | 21499376 | ID=cds.MS.gene29136.t1;Parent=MS.gene29136.t1 |
chr5.3 | exon | 21498370 | 21498509 | 21498370 | ID=MS.gene29136.t1.exon2;Parent=MS.gene29136.t1 |
chr5.3 | CDS | 21498370 | 21498509 | 21498370 | ID=cds.MS.gene29136.t1;Parent=MS.gene29136.t1 |
chr5.3 | exon | 21497529 | 21498283 | 21497529 | ID=MS.gene29136.t1.exon3;Parent=MS.gene29136.t1 |
chr5.3 | CDS | 21497529 | 21498283 | 21497529 | ID=cds.MS.gene29136.t1;Parent=MS.gene29136.t1 |
chr5.3 | exon | 21497179 | 21497267 | 21497179 | ID=MS.gene29136.t1.exon4;Parent=MS.gene29136.t1 |
chr5.3 | CDS | 21497179 | 21497267 | 21497179 | ID=cds.MS.gene29136.t1;Parent=MS.gene29136.t1 |
chr5.3 | exon | 21496651 | 21496736 | 21496651 | ID=MS.gene29136.t1.exon5;Parent=MS.gene29136.t1 |
chr5.3 | CDS | 21496651 | 21496736 | 21496651 | ID=cds.MS.gene29136.t1;Parent=MS.gene29136.t1 |
chr5.3 | exon | 21496399 | 21496561 | 21496399 | ID=MS.gene29136.t1.exon6;Parent=MS.gene29136.t1 |
chr5.3 | CDS | 21496399 | 21496561 | 21496399 | ID=cds.MS.gene29136.t1;Parent=MS.gene29136.t1 |
chr5.3 | exon | 21496170 | 21496284 | 21496170 | ID=MS.gene29136.t1.exon7;Parent=MS.gene29136.t1 |
chr5.3 | CDS | 21496170 | 21496284 | 21496170 | ID=cds.MS.gene29136.t1;Parent=MS.gene29136.t1 |
chr5.3 | exon | 21495882 | 21496039 | 21495882 | ID=MS.gene29136.t1.exon8;Parent=MS.gene29136.t1 |
chr5.3 | CDS | 21495882 | 21496039 | 21495882 | ID=cds.MS.gene29136.t1;Parent=MS.gene29136.t1 |
chr5.3 | exon | 21493146 | 21493230 | 21493146 | ID=MS.gene29136.t1.exon9;Parent=MS.gene29136.t1 |
chr5.3 | CDS | 21493146 | 21493230 | 21493146 | ID=cds.MS.gene29136.t1;Parent=MS.gene29136.t1 |
chr5.3 | exon | 21492821 | 21493033 | 21492821 | ID=MS.gene29136.t1.exon10;Parent=MS.gene29136.t1 |
chr5.3 | CDS | 21492821 | 21493033 | 21492821 | ID=cds.MS.gene29136.t1;Parent=MS.gene29136.t1 |
chr5.3 | exon | 21492035 | 21492096 | 21492035 | ID=MS.gene29136.t1.exon11;Parent=MS.gene29136.t1 |
chr5.3 | CDS | 21492035 | 21492096 | 21492035 | ID=cds.MS.gene29136.t1;Parent=MS.gene29136.t1 |
chr5.3 | exon | 21491261 | 21491918 | 21491261 | ID=MS.gene29136.t1.exon12;Parent=MS.gene29136.t1 |
chr5.3 | CDS | 21491261 | 21491918 | 21491261 | ID=cds.MS.gene29136.t1;Parent=MS.gene29136.t1 |
Gene Sequence |
Protein sequence |