Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene73879.t1 | XP_013447063.1 | 93.7 | 239 | 15 | 0 | 1 | 239 | 358 | 596 | 2.80E-130 | 474.6 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene73879.t1 | Q9LDD4 | 49.3 | 207 | 98 | 3 | 34 | 238 | 372 | 573 | 4.0e-53 | 209.5 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene73879.t1 | A0A072U5F3 | 93.7 | 239 | 15 | 0 | 1 | 239 | 358 | 596 | 2.0e-130 | 474.6 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene049230 | MS.gene73879 | 0.809601 | 1.75E-50 | -1.69E-46 |
MS.gene049378 | MS.gene73879 | 0.805367 | 1.38E-49 | -1.69E-46 |
MS.gene049669 | MS.gene73879 | 0.81681 | 4.56E-52 | -1.69E-46 |
MS.gene049825 | MS.gene73879 | 0.810534 | 1.10E-50 | -1.69E-46 |
MS.gene049873 | MS.gene73879 | 0.812447 | 4.22E-51 | -1.69E-46 |
MS.gene050226 | MS.gene73879 | 0.801176 | 1.02E-48 | -1.69E-46 |
MS.gene050227 | MS.gene73879 | 0.822202 | 2.69E-53 | -1.69E-46 |
MS.gene050228 | MS.gene73879 | 0.824156 | 9.40E-54 | -1.69E-46 |
MS.gene050303 | MS.gene73879 | 0.846876 | 1.65E-59 | -1.69E-46 |
MS.gene050330 | MS.gene73879 | -0.806721 | 7.17E-50 | -1.69E-46 |
MS.gene050355 | MS.gene73879 | 0.800963 | 1.13E-48 | -1.69E-46 |
MS.gene050442 | MS.gene73879 | 0.821675 | 3.56E-53 | -1.69E-46 |
MS.gene050623 | MS.gene73879 | -0.807869 | 4.09E-50 | -1.69E-46 |
MS.gene050642 | MS.gene73879 | 0.809381 | 1.95E-50 | -1.69E-46 |
MS.gene050721 | MS.gene73879 | 0.805005 | 1.65E-49 | -1.69E-46 |
MS.gene050750 | MS.gene73879 | 0.812364 | 4.40E-51 | -1.69E-46 |
MS.gene050953 | MS.gene73879 | 0.818931 | 1.51E-52 | -1.69E-46 |
MS.gene051349 | MS.gene73879 | 0.810272 | 1.25E-50 | -1.69E-46 |
MS.gene051633 | MS.gene73879 | 0.804559 | 2.04E-49 | -1.69E-46 |
MS.gene051983 | MS.gene73879 | 0.816428 | 5.56E-52 | -1.69E-46 |
MS.gene052012 | MS.gene73879 | 0.802359 | 5.82E-49 | -1.69E-46 |
MS.gene052176 | MS.gene73879 | 0.846393 | 2.23E-59 | -1.69E-46 |
MS.gene052302 | MS.gene73879 | 0.822526 | 2.26E-53 | -1.69E-46 |
MS.gene052309 | MS.gene73879 | -0.847552 | 1.08E-59 | -1.69E-46 |
MS.gene052358 | MS.gene73879 | -0.842406 | 2.64E-58 | -1.69E-46 |
MS.gene052376 | MS.gene73879 | 0.837007 | 6.70E-57 | -1.69E-46 |
MS.gene052519 | MS.gene73879 | 0.808038 | 3.77E-50 | -1.69E-46 |
MS.gene052858 | MS.gene73879 | 0.800909 | 1.16E-48 | -1.69E-46 |
MS.gene052860 | MS.gene73879 | 0.806389 | 8.42E-50 | -1.69E-46 |
MS.gene052926 | MS.gene73879 | 0.812689 | 3.74E-51 | -1.69E-46 |
MS.gene053080 | MS.gene73879 | 0.800276 | 1.55E-48 | -1.69E-46 |
MS.gene05415 | MS.gene73879 | 0.805283 | 1.44E-49 | -1.69E-46 |
MS.gene054405 | MS.gene73879 | 0.809235 | 2.09E-50 | -1.69E-46 |
MS.gene054657 | MS.gene73879 | 0.815066 | 1.12E-51 | -1.69E-46 |
MS.gene055711 | MS.gene73879 | 0.80798 | 3.88E-50 | -1.69E-46 |
MS.gene055818 | MS.gene73879 | 0.813869 | 2.06E-51 | -1.69E-46 |
MS.gene056087 | MS.gene73879 | 0.801077 | 1.07E-48 | -1.69E-46 |
MS.gene056091 | MS.gene73879 | 0.801629 | 8.23E-49 | -1.69E-46 |
MS.gene056506 | MS.gene73879 | 0.845369 | 4.24E-59 | -1.69E-46 |
MS.gene056979 | MS.gene73879 | 0.809565 | 1.78E-50 | -1.69E-46 |
MS.gene057026 | MS.gene73879 | 0.822202 | 2.69E-53 | -1.69E-46 |
MS.gene057060 | MS.gene73879 | 0.834684 | 2.60E-56 | -1.69E-46 |
MS.gene057079 | MS.gene73879 | 0.845129 | 4.92E-59 | -1.69E-46 |
MS.gene057555 | MS.gene73879 | 0.823727 | 1.19E-53 | -1.69E-46 |
MS.gene057693 | MS.gene73879 | 0.802046 | 6.76E-49 | -1.69E-46 |
MS.gene05795 | MS.gene73879 | 0.825974 | 3.50E-54 | -1.69E-46 |
MS.gene058037 | MS.gene73879 | 0.816946 | 4.26E-52 | -1.69E-46 |
MS.gene058399 | MS.gene73879 | 0.800669 | 1.29E-48 | -1.69E-46 |
MS.gene059249 | MS.gene73879 | 0.819131 | 1.36E-52 | -1.69E-46 |
MS.gene059317 | MS.gene73879 | 0.836344 | 9.89E-57 | -1.69E-46 |
MS.gene05954 | MS.gene73879 | 0.839682 | 1.37E-57 | -1.69E-46 |
MS.gene059569 | MS.gene73879 | 0.827509 | 1.50E-54 | -1.69E-46 |
MS.gene05979 | MS.gene73879 | 0.816842 | 4.49E-52 | -1.69E-46 |
MS.gene059830 | MS.gene73879 | 0.812354 | 4.42E-51 | -1.69E-46 |
MS.gene060322 | MS.gene73879 | 0.823545 | 1.31E-53 | -1.69E-46 |
MS.gene060572 | MS.gene73879 | 0.855823 | 4.87E-62 | -1.69E-46 |
MS.gene060586 | MS.gene73879 | 0.814876 | 1.23E-51 | -1.69E-46 |
MS.gene060683 | MS.gene73879 | 0.816292 | 5.96E-52 | -1.69E-46 |
MS.gene060685 | MS.gene73879 | 0.809607 | 1.74E-50 | -1.69E-46 |
MS.gene060803 | MS.gene73879 | 0.808064 | 3.72E-50 | -1.69E-46 |
MS.gene061040 | MS.gene73879 | -0.85855 | 7.63E-63 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene73879.t1 | MTR_8g098605 | 93.724 | 239 | 15 | 0 | 1 | 239 | 358 | 596 | 3.12e-166 | 472 |
MS.gene73879.t1 | MTR_8g098645 | 76.894 | 264 | 36 | 2 | 1 | 239 | 83 | 346 | 4.12e-148 | 417 |
MS.gene73879.t1 | MTR_1g073380 | 71.206 | 257 | 50 | 1 | 1 | 233 | 336 | 592 | 1.53e-126 | 370 |
MS.gene73879.t1 | MTR_1g073530 | 68.482 | 257 | 55 | 2 | 1 | 233 | 328 | 582 | 5.59e-121 | 356 |
MS.gene73879.t1 | MTR_1g073590 | 67.704 | 257 | 57 | 2 | 1 | 233 | 325 | 579 | 9.27e-120 | 353 |
MS.gene73879.t1 | MTR_8g098635 | 81.407 | 199 | 37 | 0 | 41 | 239 | 99 | 297 | 2.60e-118 | 339 |
MS.gene73879.t1 | MTR_8g098635 | 81.407 | 199 | 37 | 0 | 41 | 239 | 182 | 380 | 6.80e-117 | 339 |
MS.gene73879.t1 | MTR_7g078120 | 48.438 | 192 | 99 | 0 | 36 | 227 | 387 | 578 | 5.54e-60 | 199 |
MS.gene73879.t1 | MTR_7g078120 | 48.438 | 192 | 99 | 0 | 36 | 227 | 387 | 578 | 1.33e-59 | 199 |
MS.gene73879.t1 | MTR_0259s0060 | 53.591 | 181 | 37 | 1 | 34 | 214 | 14 | 147 | 4.10e-57 | 179 |
MS.gene73879.t1 | MTR_8g028905 | 50.286 | 175 | 83 | 3 | 36 | 206 | 408 | 582 | 4.61e-52 | 177 |
MS.gene73879.t1 | MTR_6g071350 | 56.000 | 150 | 46 | 3 | 20 | 166 | 266 | 398 | 2.49e-43 | 150 |
MS.gene73879.t1 | MTR_6g071350 | 47.222 | 72 | 37 | 1 | 169 | 239 | 330 | 401 | 4.26e-14 | 71.2 |
MS.gene73879.t1 | MTR_6g071355 | 64.948 | 97 | 15 | 1 | 127 | 223 | 1 | 78 | 2.84e-35 | 120 |
MS.gene73879.t1 | MTR_1g073420 | 75.000 | 68 | 17 | 0 | 166 | 233 | 61 | 128 | 5.03e-33 | 116 |
MS.gene73879.t1 | MTR_5g048010 | 48.855 | 131 | 42 | 3 | 39 | 166 | 205 | 313 | 5.16e-29 | 111 |
MS.gene73879.t1 | MTR_5g048010 | 48.611 | 72 | 36 | 1 | 169 | 239 | 245 | 316 | 7.98e-15 | 72.8 |
MS.gene73879.t1 | MTR_7g066890 | 36.842 | 171 | 100 | 2 | 35 | 199 | 193 | 361 | 6.13e-28 | 109 |
MS.gene73879.t1 | MTR_7g066890 | 36.842 | 171 | 100 | 2 | 35 | 199 | 295 | 463 | 2.65e-27 | 108 |
MS.gene73879.t1 | MTR_3g023780 | 37.912 | 182 | 100 | 5 | 34 | 204 | 147 | 326 | 1.88e-26 | 107 |
MS.gene73879.t1 | MTR_7g066880 | 29.240 | 171 | 113 | 2 | 35 | 199 | 185 | 353 | 7.67e-18 | 81.6 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene73879.t1 | AT4G11400 | 49.275 | 207 | 98 | 3 | 34 | 238 | 372 | 573 | 1.05e-62 | 205 |
MS.gene73879.t1 | AT4G11400 | 49.275 | 207 | 98 | 3 | 34 | 238 | 372 | 573 | 1.05e-62 | 205 |
MS.gene73879.t1 | AT2G46040 | 43.860 | 171 | 92 | 2 | 38 | 205 | 362 | 531 | 1.09e-42 | 152 |
MS.gene73879.t1 | AT2G46040 | 43.860 | 171 | 92 | 2 | 38 | 205 | 362 | 531 | 1.09e-42 | 152 |
MS.gene73879.t1 | AT2G46040 | 43.860 | 171 | 92 | 2 | 38 | 205 | 376 | 545 | 1.56e-42 | 152 |
MS.gene73879.t1 | AT5G04110 | 36.420 | 162 | 91 | 4 | 35 | 185 | 361 | 521 | 1.17e-26 | 107 |
MS.gene73879.t1 | AT5G04110 | 36.420 | 162 | 91 | 4 | 35 | 185 | 360 | 520 | 1.20e-26 | 107 |
MS.gene73879.t1 | AT5G04110 | 36.420 | 162 | 91 | 4 | 35 | 185 | 360 | 520 | 1.20e-26 | 107 |
MS.gene73879.t1 | AT1G13880 | 33.511 | 188 | 97 | 5 | 34 | 204 | 136 | 312 | 1.76e-21 | 92.4 |
MS.gene73879.t1 | AT1G13880 | 33.696 | 184 | 102 | 5 | 34 | 204 | 126 | 302 | 1.85e-21 | 92.4 |
MS.gene73879.t1 | AT1G13880 | 33.696 | 184 | 102 | 5 | 34 | 204 | 127 | 303 | 1.86e-21 | 92.4 |
MS.gene73879.t1 | AT2G03470 | 34.375 | 192 | 105 | 6 | 34 | 211 | 121 | 305 | 3.25e-21 | 92.0 |
MS.gene73879.t1 | AT1G26580 | 30.769 | 195 | 116 | 4 | 28 | 204 | 127 | 320 | 3.50e-21 | 92.0 |
MS.gene73879.t1 | AT1G26580 | 30.769 | 195 | 116 | 4 | 28 | 204 | 127 | 320 | 3.50e-21 | 92.0 |
MS.gene73879.t1 | AT1G26580 | 30.769 | 195 | 116 | 4 | 28 | 204 | 61 | 254 | 3.57e-21 | 91.7 |
MS.gene73879.t1 | AT2G03470 | 34.375 | 192 | 105 | 6 | 34 | 211 | 120 | 304 | 3.89e-21 | 91.7 |
MS.gene73879.t1 | AT5G04110 | 34.247 | 146 | 84 | 4 | 35 | 169 | 360 | 504 | 1.51e-18 | 84.3 |
Find 42 sgRNAs with CRISPR-Local
Find 57 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CCTCTCAAAACAAGTCTTAT+TGG | 0.170728 | 4.1:-5815564 | MS.gene73879:CDS |
TCATTGGGGATTTGATAAAA+TGG | 0.206237 | 4.1:-5815659 | MS.gene73879:CDS |
TGATGAAGAAAAGAGATTTA+AGG | 0.278264 | 4.1:-5815608 | MS.gene73879:CDS |
GATGATGACGAAGTGGAATT+TGG | 0.312152 | 4.1:-5815418 | MS.gene73879:CDS |
AAATTTGAATCATCTTTAAC+AGG | 0.325129 | 4.1:+5815820 | None:intergenic |
TGCCTTCCTTCGAAAGCATC+TGG | 0.341525 | 4.1:+5815531 | None:intergenic |
TTTCTGAGAGTGACTCTAAA+TGG | 0.355739 | 4.1:-5815861 | MS.gene73879:CDS |
TCATCCTGTTATCAGCAATA+TGG | 0.363774 | 4.1:+5815713 | None:intergenic |
AGCTATCAGGCATCCATCTA+TGG | 0.376521 | 4.1:-5815368 | MS.gene73879:CDS |
GCATCCATCTATGGAATTCA+TGG | 0.384589 | 4.1:-5815359 | MS.gene73879:CDS |
TCACGAAAATCATCCATAGA+TGG | 0.391160 | 4.1:+5815943 | None:intergenic |
TCTCCCAACAAGATCTGTTT+CGG | 0.391180 | 4.1:+5815792 | None:intergenic |
CGACCGAAACAGATCTTGTT+GGG | 0.392797 | 4.1:-5815795 | MS.gene73879:CDS |
GATTCCATATTGCTGATAAC+AGG | 0.400946 | 4.1:-5815717 | MS.gene73879:CDS |
CACTCCATGAATTCCATAGA+TGG | 0.401034 | 4.1:+5815355 | None:intergenic |
CATTGGGGATTTGATAAAAT+GGG | 0.401799 | 4.1:-5815658 | MS.gene73879:CDS |
GTTTCGGAAGGAAAGCTATC+AGG | 0.412531 | 4.1:-5815381 | MS.gene73879:CDS |
GAAACTACACCAGTCCATTC+CGG | 0.442162 | 4.1:+5815880 | None:intergenic |
CGTGAAAAGGTTGTTTCTGT+AGG | 0.454662 | 4.1:-5815925 | MS.gene73879:CDS |
AAGAGATTTAAGGATGCAAT+GGG | 0.459473 | 4.1:-5815598 | MS.gene73879:CDS |
TCATCACTGTCAACAGCATT+CGG | 0.478391 | 4.1:+5815436 | None:intergenic |
TGTCCTCTGGAGAAAACAAC+TGG | 0.480314 | 4.1:-5816003 | MS.gene73879:CDS |
AAGTGTAACTGCAACGTTCA+AGG | 0.486984 | 4.1:-5815757 | MS.gene73879:CDS |
AAAGAGATTTAAGGATGCAA+TGG | 0.490346 | 4.1:-5815599 | MS.gene73879:CDS |
ACGACCGAAACAGATCTTGT+TGG | 0.491169 | 4.1:-5815796 | MS.gene73879:CDS |
CTCTAAATGGTTAGGCACAC+AGG | 0.491986 | 4.1:-5815848 | MS.gene73879:CDS |
GAAATCAGAAAAGTGTCCTC+TGG | 0.492152 | 4.1:-5816016 | MS.gene73879:CDS |
GAGAGTGACTCTAAATGGTT+AGG | 0.492462 | 4.1:-5815856 | MS.gene73879:CDS |
GCGAGGAAGTTTCACTTCGA+TGG | 0.518888 | 4.1:-5815636 | MS.gene73879:CDS |
ATCCAGATGCTTTCGAAGGA+AGG | 0.523376 | 4.1:-5815533 | MS.gene73879:CDS |
TTCCTTCGAAAGCATCTGGA+TGG | 0.534860 | 4.1:+5815535 | None:intergenic |
GCGGAAGTTCCGGAATGGAC+TGG | 0.543878 | 4.1:-5815889 | MS.gene73879:CDS |
GGGATTTGATAAAATGGGCG+AGG | 0.561801 | 4.1:-5815653 | MS.gene73879:CDS |
TTCAAGCGGAAGTTCCGGAA+TGG | 0.568980 | 4.1:-5815894 | MS.gene73879:CDS |
AAGGAAGGCAAGAAAAGACT+TGG | 0.584242 | 4.1:-5815518 | MS.gene73879:CDS |
ATCCATCCAGATGCTTTCGA+AGG | 0.594160 | 4.1:-5815537 | MS.gene73879:CDS |
AATGGTTAGGCACACAGGTG+TGG | 0.617036 | 4.1:-5815843 | MS.gene73879:CDS |
GAAACAGATCTTGTTGGGAG+AGG | 0.619840 | 4.1:-5815790 | MS.gene73879:CDS |
CTTGTTGGGAGAGGAAGACG+AGG | 0.636192 | 4.1:-5815781 | MS.gene73879:CDS |
AGGCAAGAAAAGACTTGGTG+AGG | 0.649236 | 4.1:-5815513 | MS.gene73879:CDS |
TGACAGTGATGATGACGAAG+TGG | 0.678639 | 4.1:-5815425 | MS.gene73879:CDS |
TGATAACAGGATGAAGCTGA+AGG | 0.716490 | 4.1:-5815704 | MS.gene73879:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | AAATTTGAATCATCTTTAAC+AGG | + | chr4.1:5815522-5815541 | None:intergenic | 20.0% |
! | TGATGAAGAAAAGAGATTTA+AGG | - | chr4.1:5815731-5815750 | MS.gene73879:CDS | 25.0% |
AAAGAGATTTAAGGATGCAA+TGG | - | chr4.1:5815740-5815759 | MS.gene73879:CDS | 30.0% | |
AAGAGATTTAAGGATGCAAT+GGG | - | chr4.1:5815741-5815760 | MS.gene73879:CDS | 30.0% | |
CATTGGGGATTTGATAAAAT+GGG | - | chr4.1:5815681-5815700 | MS.gene73879:CDS | 30.0% | |
TCATTGGGGATTTGATAAAA+TGG | - | chr4.1:5815680-5815699 | MS.gene73879:CDS | 30.0% | |
! | GAATTTGGATCTTTTGATGA+TGG | - | chr4.1:5815936-5815955 | MS.gene73879:CDS | 30.0% |
! | TATGGATGATTTTCGTGAAA+AGG | - | chr4.1:5815401-5815420 | MS.gene73879:CDS | 30.0% |
!!! | AATAAGACTTGTTTTGAGAG+GGG | + | chr4.1:5815776-5815795 | None:intergenic | 30.0% |
!!! | CAATAAGACTTGTTTTGAGA+GGG | + | chr4.1:5815777-5815796 | None:intergenic | 30.0% |
GAAAAAATCTGAGCCATCTA+TGG | - | chr4.1:5815383-5815402 | MS.gene73879:CDS | 35.0% | |
GATTCCATATTGCTGATAAC+AGG | - | chr4.1:5815622-5815641 | MS.gene73879:CDS | 35.0% | |
TCACGAAAATCATCCATAGA+TGG | + | chr4.1:5815399-5815418 | None:intergenic | 35.0% | |
TCATCCTGTTATCAGCAATA+TGG | + | chr4.1:5815629-5815648 | None:intergenic | 35.0% | |
! | CCTCTCAAAACAAGTCTTAT+TGG | - | chr4.1:5815775-5815794 | MS.gene73879:CDS | 35.0% |
! | CGTTCTGTGTTTTATCATTG+GGG | - | chr4.1:5815666-5815685 | MS.gene73879:CDS | 35.0% |
! | GCGTTCTGTGTTTTATCATT+GGG | - | chr4.1:5815665-5815684 | MS.gene73879:CDS | 35.0% |
! | TGCGTTCTGTGTTTTATCAT+TGG | - | chr4.1:5815664-5815683 | MS.gene73879:CDS | 35.0% |
! | TTCTTTTTGATCACGACATC+TGG | + | chr4.1:5815366-5815385 | None:intergenic | 35.0% |
! | TTTCTGAGAGTGACTCTAAA+TGG | - | chr4.1:5815478-5815497 | MS.gene73879:CDS | 35.0% |
!!! | CCAATAAGACTTGTTTTGAG+AGG | + | chr4.1:5815778-5815797 | None:intergenic | 35.0% |
!!! | GGATCTTTTGATGATGGTTT+CGG | - | chr4.1:5815942-5815961 | MS.gene73879:CDS | 35.0% |
!!! | TGTAGGCAACTTTTTTCAAG+CGG | - | chr4.1:5815431-5815450 | MS.gene73879:CDS | 35.0% |
AAGGAAGGCAAGAAAAGACT+TGG | - | chr4.1:5815821-5815840 | MS.gene73879:CDS | 40.0% | |
AAGTGTAACTGCAACGTTCA+AGG | - | chr4.1:5815582-5815601 | MS.gene73879:CDS | 40.0% | |
CACTCCATGAATTCCATAGA+TGG | + | chr4.1:5815987-5816006 | None:intergenic | 40.0% | |
GAGAGTGACTCTAAATGGTT+AGG | - | chr4.1:5815483-5815502 | MS.gene73879:CDS | 40.0% | |
GCATCCATCTATGGAATTCA+TGG | - | chr4.1:5815980-5815999 | MS.gene73879:CDS | 40.0% | |
TCATCACTGTCAACAGCATT+CGG | + | chr4.1:5815906-5815925 | None:intergenic | 40.0% | |
TCTCCCAACAAGATCTGTTT+CGG | + | chr4.1:5815550-5815569 | None:intergenic | 40.0% | |
TGATAACAGGATGAAGCTGA+AGG | - | chr4.1:5815635-5815654 | MS.gene73879:CDS | 40.0% | |
! | GATGATGACGAAGTGGAATT+TGG | - | chr4.1:5815921-5815940 | MS.gene73879:CDS | 40.0% |
!! | CGTGAAAAGGTTGTTTCTGT+AGG | - | chr4.1:5815414-5815433 | MS.gene73879:CDS | 40.0% |
!! | GAAATCAGAAAAGTGTCCTC+TGG | - | chr4.1:5815323-5815342 | MS.gene73879:CDS | 40.0% |
!!! | CTTTTGATGATGGTTTCGGA+AGG | - | chr4.1:5815946-5815965 | MS.gene73879:CDS | 40.0% |
!!! | CTTTTTTCAAGCGGAAGTTC+CGG | - | chr4.1:5815440-5815459 | MS.gene73879:CDS | 40.0% |
ACGACCGAAACAGATCTTGT+TGG | - | chr4.1:5815543-5815562 | MS.gene73879:CDS | 45.0% | |
AGCTATCAGGCATCCATCTA+TGG | - | chr4.1:5815971-5815990 | MS.gene73879:CDS | 45.0% | |
ATCCAGATGCTTTCGAAGGA+AGG | - | chr4.1:5815806-5815825 | MS.gene73879:CDS | 45.0% | |
ATCCATCCAGATGCTTTCGA+AGG | - | chr4.1:5815802-5815821 | MS.gene73879:CDS | 45.0% | |
CGACCGAAACAGATCTTGTT+GGG | - | chr4.1:5815544-5815563 | MS.gene73879:CDS | 45.0% | |
CTCTAAATGGTTAGGCACAC+AGG | - | chr4.1:5815491-5815510 | MS.gene73879:CDS | 45.0% | |
GAAACAGATCTTGTTGGGAG+AGG | - | chr4.1:5815549-5815568 | MS.gene73879:CDS | 45.0% | |
GAAACTACACCAGTCCATTC+CGG | + | chr4.1:5815462-5815481 | None:intergenic | 45.0% | |
GGGATTTGATAAAATGGGCG+AGG | - | chr4.1:5815686-5815705 | MS.gene73879:CDS | 45.0% | |
GTTTCGGAAGGAAAGCTATC+AGG | - | chr4.1:5815958-5815977 | MS.gene73879:CDS | 45.0% | |
! | TGACAGTGATGATGACGAAG+TGG | - | chr4.1:5815914-5815933 | MS.gene73879:CDS | 45.0% |
! | TGTCCTCTGGAGAAAACAAC+TGG | - | chr4.1:5815336-5815355 | MS.gene73879:CDS | 45.0% |
!! | AGGCAAGAAAAGACTTGGTG+AGG | - | chr4.1:5815826-5815845 | MS.gene73879:CDS | 45.0% |
!! | TTCCTTCGAAAGCATCTGGA+TGG | + | chr4.1:5815807-5815826 | None:intergenic | 45.0% |
!! | TTGCCAGTTGTTTTCTCCAG+AGG | + | chr4.1:5815342-5815361 | None:intergenic | 45.0% |
AATGGTTAGGCACACAGGTG+TGG | - | chr4.1:5815496-5815515 | MS.gene73879:CDS | 50.0% | |
GCGAGGAAGTTTCACTTCGA+TGG | - | chr4.1:5815703-5815722 | MS.gene73879:CDS | 50.0% | |
TTCAAGCGGAAGTTCCGGAA+TGG | - | chr4.1:5815445-5815464 | MS.gene73879:CDS | 50.0% | |
!! | TGCCTTCCTTCGAAAGCATC+TGG | + | chr4.1:5815811-5815830 | None:intergenic | 50.0% |
CTTGTTGGGAGAGGAAGACG+AGG | - | chr4.1:5815558-5815577 | MS.gene73879:CDS | 55.0% | |
GCGGAAGTTCCGGAATGGAC+TGG | - | chr4.1:5815450-5815469 | MS.gene73879:CDS | 60.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr4.1 | gene | 5815321 | 5816040 | 5815321 | ID=MS.gene73879 |
chr4.1 | mRNA | 5815321 | 5816040 | 5815321 | ID=MS.gene73879.t1;Parent=MS.gene73879 |
chr4.1 | exon | 5815321 | 5816040 | 5815321 | ID=MS.gene73879.t1.exon1;Parent=MS.gene73879.t1 |
chr4.1 | CDS | 5815321 | 5816040 | 5815321 | ID=cds.MS.gene73879.t1;Parent=MS.gene73879.t1 |
Gene Sequence |
Protein sequence |