Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene82548.t1 | XP_003600920.2 | 96.8 | 251 | 8 | 0 | 118 | 368 | 25 | 275 | 5.40E-133 | 484.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene82548.t1 | Q42440 | 64.5 | 251 | 89 | 0 | 118 | 368 | 25 | 275 | 2.0e-91 | 337.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene82548.t1 | G7JBT1 | 96.8 | 251 | 8 | 0 | 118 | 368 | 25 | 275 | 3.9e-133 | 484.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049341 | MS.gene82548 | 0.822752 | 2.00E-53 | -1.69E-46 |
| MS.gene049382 | MS.gene82548 | 0.823123 | 1.64E-53 | -1.69E-46 |
| MS.gene049821 | MS.gene82548 | 0.806829 | 6.80E-50 | -1.69E-46 |
| MS.gene050020 | MS.gene82548 | 0.816634 | 5.00E-52 | -1.69E-46 |
| MS.gene050237 | MS.gene82548 | 0.824812 | 6.59E-54 | -1.69E-46 |
| MS.gene050277 | MS.gene82548 | 0.821529 | 3.85E-53 | -1.69E-46 |
| MS.gene050438 | MS.gene82548 | 0.806414 | 8.32E-50 | -1.69E-46 |
| MS.gene050586 | MS.gene82548 | 0.819019 | 1.45E-52 | -1.69E-46 |
| MS.gene050719 | MS.gene82548 | 0.822635 | 2.13E-53 | -1.69E-46 |
| MS.gene050721 | MS.gene82548 | 0.821813 | 3.31E-53 | -1.69E-46 |
| MS.gene050724 | MS.gene82548 | 0.810405 | 1.17E-50 | -1.69E-46 |
| MS.gene050807 | MS.gene82548 | 0.822881 | 1.87E-53 | -1.69E-46 |
| MS.gene050808 | MS.gene82548 | 0.802379 | 5.77E-49 | -1.69E-46 |
| MS.gene050815 | MS.gene82548 | 0.809008 | 2.34E-50 | -1.69E-46 |
| MS.gene051243 | MS.gene82548 | 0.845371 | 4.23E-59 | -1.69E-46 |
| MS.gene051328 | MS.gene82548 | 0.824854 | 6.44E-54 | -1.69E-46 |
| MS.gene051789 | MS.gene82548 | 0.821913 | 3.13E-53 | -1.69E-46 |
| MS.gene052133 | MS.gene82548 | 0.819099 | 1.39E-52 | -1.69E-46 |
| MS.gene052286 | MS.gene82548 | 0.816758 | 4.69E-52 | -1.69E-46 |
| MS.gene052302 | MS.gene82548 | 0.81758 | 3.06E-52 | -1.69E-46 |
| MS.gene052376 | MS.gene82548 | 0.8171 | 3.93E-52 | -1.69E-46 |
| MS.gene052665 | MS.gene82548 | 0.834074 | 3.70E-56 | -1.69E-46 |
| MS.gene052856 | MS.gene82548 | 0.809845 | 1.55E-50 | -1.69E-46 |
| MS.gene052858 | MS.gene82548 | 0.818359 | 2.04E-52 | -1.69E-46 |
| MS.gene052860 | MS.gene82548 | 0.829624 | 4.64E-55 | -1.69E-46 |
| MS.gene053085 | MS.gene82548 | 0.810763 | 9.80E-51 | -1.69E-46 |
| MS.gene053437 | MS.gene82548 | 0.805103 | 1.57E-49 | -1.69E-46 |
| MS.gene053630 | MS.gene82548 | 0.851792 | 7.05E-61 | -1.69E-46 |
| MS.gene055468 | MS.gene82548 | 0.807282 | 5.45E-50 | -1.69E-46 |
| MS.gene055512 | MS.gene82548 | 0.806544 | 7.81E-50 | -1.69E-46 |
| MS.gene055711 | MS.gene82548 | 0.813226 | 2.85E-51 | -1.69E-46 |
| MS.gene056069 | MS.gene82548 | -0.833243 | 5.96E-56 | -1.69E-46 |
| MS.gene056498 | MS.gene82548 | 0.823894 | 1.08E-53 | -1.69E-46 |
| MS.gene056760 | MS.gene82548 | 0.852379 | 4.80E-61 | -1.69E-46 |
| MS.gene057057 | MS.gene82548 | 0.802709 | 4.93E-49 | -1.69E-46 |
| MS.gene057060 | MS.gene82548 | 0.806329 | 8.67E-50 | -1.69E-46 |
| MS.gene057140 | MS.gene82548 | 0.806279 | 8.89E-50 | -1.69E-46 |
| MS.gene057260 | MS.gene82548 | 0.817127 | 3.87E-52 | -1.69E-46 |
| MS.gene05795 | MS.gene82548 | 0.818623 | 1.78E-52 | -1.69E-46 |
| MS.gene058084 | MS.gene82548 | 0.806441 | 8.21E-50 | -1.69E-46 |
| MS.gene058182 | MS.gene82548 | 0.807919 | 3.99E-50 | -1.69E-46 |
| MS.gene058636 | MS.gene82548 | 0.817454 | 3.27E-52 | -1.69E-46 |
| MS.gene058906 | MS.gene82548 | 0.844535 | 7.12E-59 | -1.69E-46 |
| MS.gene058982 | MS.gene82548 | 0.800732 | 1.26E-48 | -1.69E-46 |
| MS.gene059937 | MS.gene82548 | 0.800112 | 1.68E-48 | -1.69E-46 |
| MS.gene06001 | MS.gene82548 | 0.816192 | 6.28E-52 | -1.69E-46 |
| MS.gene060476 | MS.gene82548 | 0.810634 | 1.05E-50 | -1.69E-46 |
| MS.gene060480 | MS.gene82548 | 0.803199 | 3.91E-49 | -1.69E-46 |
| MS.gene060619 | MS.gene82548 | 0.801143 | 1.03E-48 | -1.69E-46 |
| MS.gene060918 | MS.gene82548 | 0.806793 | 6.92E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene031958 | MS.gene82548 | PPI |
| MS.gene008045 | MS.gene82548 | PPI |
| MS.gene82040 | MS.gene82548 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene82548.t1 | MTR_3g070890 | 96.813 | 251 | 8 | 0 | 118 | 368 | 25 | 275 | 1.40e-176 | 491 |
| MS.gene82548.t1 | MTR_3g449480 | 96.414 | 251 | 9 | 0 | 118 | 368 | 55 | 305 | 1.40e-175 | 490 |
| MS.gene82548.t1 | MTR_3g449480 | 96.414 | 251 | 9 | 0 | 118 | 368 | 39 | 289 | 2.62e-175 | 489 |
| MS.gene82548.t1 | MTR_3g449480 | 96.414 | 251 | 9 | 0 | 118 | 368 | 25 | 275 | 3.73e-175 | 488 |
| MS.gene82548.t1 | MTR_3g449480 | 96.414 | 251 | 9 | 0 | 118 | 368 | 25 | 275 | 3.73e-175 | 488 |
| MS.gene82548.t1 | MTR_3g449480 | 96.414 | 251 | 9 | 0 | 118 | 368 | 94 | 344 | 5.35e-174 | 488 |
| MS.gene82548.t1 | MTR_3g449480 | 98.485 | 66 | 1 | 0 | 163 | 228 | 1 | 66 | 2.83e-34 | 129 |
| MS.gene82548.t1 | MTR_3g449480 | 96.414 | 251 | 9 | 0 | 118 | 368 | 193 | 443 | 2.10e-173 | 490 |
| MS.gene82548.t1 | MTR_3g449480 | 96.396 | 111 | 4 | 0 | 118 | 228 | 55 | 165 | 3.37e-65 | 213 |
| MS.gene82548.t1 | MTR_3g449480 | 96.414 | 251 | 9 | 0 | 118 | 368 | 163 | 413 | 3.75e-173 | 488 |
| MS.gene82548.t1 | MTR_3g449480 | 96.396 | 111 | 4 | 0 | 118 | 228 | 25 | 135 | 3.03e-65 | 213 |
| MS.gene82548.t1 | MTR_3g070890 | 97.573 | 206 | 5 | 0 | 163 | 368 | 1 | 206 | 1.96e-144 | 407 |
| MS.gene82548.t1 | MTR_3g449480 | 97.087 | 206 | 6 | 0 | 163 | 368 | 1 | 206 | 4.02e-143 | 404 |
| MS.gene82548.t1 | MTR_3g449480 | 96.591 | 176 | 6 | 0 | 118 | 293 | 39 | 214 | 1.43e-118 | 342 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene82548.t1 | AT1G07780 | 64.542 | 251 | 89 | 0 | 118 | 368 | 25 | 275 | 2.24e-117 | 342 |
| MS.gene82548.t1 | AT1G07780 | 64.542 | 251 | 89 | 0 | 118 | 368 | 25 | 275 | 2.24e-117 | 342 |
| MS.gene82548.t1 | AT1G07780 | 64.542 | 251 | 89 | 0 | 118 | 368 | 25 | 275 | 2.24e-117 | 342 |
| MS.gene82548.t1 | AT1G07780 | 64.542 | 251 | 89 | 0 | 118 | 368 | 25 | 275 | 2.24e-117 | 342 |
| MS.gene82548.t1 | AT1G07780 | 64.542 | 251 | 89 | 0 | 118 | 368 | 25 | 275 | 2.24e-117 | 342 |
| MS.gene82548.t1 | AT1G07780 | 64.542 | 251 | 89 | 0 | 118 | 368 | 25 | 275 | 2.24e-117 | 342 |
| MS.gene82548.t1 | AT1G07780 | 64.542 | 251 | 89 | 0 | 118 | 368 | 25 | 275 | 2.24e-117 | 342 |
| MS.gene82548.t1 | AT1G07780 | 64.542 | 251 | 89 | 0 | 118 | 368 | 25 | 275 | 2.24e-117 | 342 |
| MS.gene82548.t1 | AT5G05590 | 64.542 | 251 | 89 | 0 | 118 | 368 | 25 | 275 | 3.11e-117 | 341 |
| MS.gene82548.t1 | AT1G07780 | 71.845 | 206 | 58 | 0 | 163 | 368 | 1 | 206 | 4.11e-108 | 315 |
| MS.gene82548.t1 | AT1G07780 | 57.360 | 197 | 82 | 1 | 118 | 312 | 25 | 221 | 1.50e-75 | 233 |
| MS.gene82548.t1 | AT1G07780 | 57.360 | 197 | 82 | 1 | 118 | 312 | 25 | 221 | 1.50e-75 | 233 |
| MS.gene82548.t1 | AT5G05590 | 57.360 | 197 | 82 | 1 | 118 | 312 | 25 | 221 | 2.22e-75 | 233 |
| MS.gene82548.t1 | AT1G07780 | 59.259 | 189 | 74 | 1 | 118 | 303 | 25 | 213 | 8.59e-75 | 231 |
| MS.gene82548.t1 | AT1G07780 | 59.259 | 189 | 74 | 1 | 118 | 303 | 25 | 213 | 8.59e-75 | 231 |
| MS.gene82548.t1 | AT5G05590 | 59.259 | 189 | 74 | 1 | 118 | 303 | 25 | 213 | 1.22e-74 | 230 |
| MS.gene82548.t1 | AT1G29410 | 61.364 | 176 | 68 | 0 | 118 | 293 | 4 | 179 | 7.50e-73 | 225 |
| MS.gene82548.t1 | AT1G29410 | 59.563 | 183 | 74 | 0 | 111 | 293 | 18 | 200 | 9.27e-73 | 226 |
| MS.gene82548.t1 | AT1G29410 | 59.563 | 183 | 74 | 0 | 111 | 293 | 18 | 200 | 9.27e-73 | 226 |
| MS.gene82548.t1 | AT1G29410 | 61.364 | 176 | 68 | 0 | 118 | 293 | 4 | 179 | 1.51e-72 | 225 |
| MS.gene82548.t1 | AT1G29410 | 61.364 | 176 | 68 | 0 | 118 | 293 | 4 | 179 | 1.51e-72 | 225 |
| MS.gene82548.t1 | AT1G29410 | 61.364 | 176 | 68 | 0 | 118 | 293 | 25 | 200 | 2.01e-72 | 226 |
| MS.gene82548.t1 | AT1G29410 | 61.364 | 176 | 68 | 0 | 118 | 293 | 25 | 200 | 2.01e-72 | 226 |
| MS.gene82548.t1 | AT5G05590 | 49.780 | 227 | 82 | 2 | 118 | 312 | 25 | 251 | 1.32e-69 | 219 |
Find 93 sgRNAs with CRISPR-Local
Find 293 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAAATTGGCTTCACTGAATT+TGG | 0.096000 | 3.1:+58175706 | MS.gene82548:CDS |
| CATCAGGAATTGTGTTTAAA+AGG | 0.166323 | 3.1:-58178271 | None:intergenic |
| ATCATACAAGGAGTACAAAT+TGG | 0.210922 | 3.1:-58177615 | None:intergenic |
| TTGTACTCCTTGTATGATTT+TGG | 0.233780 | 3.1:+58177620 | MS.gene82548:CDS |
| GAAGCTGGAGCAAACTTTAT+TGG | 0.273537 | 3.1:+58177910 | MS.gene82548:CDS |
| TCCTCTTGTTGATTGGGTTC+TGG | 0.315679 | 3.1:+58178301 | MS.gene82548:CDS |
| TGATTTCCATGGTGACAAAT+TGG | 0.325304 | 3.1:+58175691 | MS.gene82548:CDS |
| AGCTTTCCCATCTTTGATTC+AGG | 0.337440 | 3.1:+58178205 | MS.gene82548:CDS |
| GCTGCTATGGCGGCCGAAGC+TGG | 0.347935 | 3.1:+58177895 | MS.gene82548:CDS |
| ACTTGAAAAGATTAAGCCTT+TGG | 0.355111 | 3.1:+58177840 | MS.gene82548:CDS |
| GGGGTGGGTGTGTTCGGATA+TGG | 0.356830 | 3.1:+58177352 | MS.gene82548:CDS |
| TTTAGAGGGGTGGGTGTGTT+CGG | 0.357031 | 3.1:+58177346 | MS.gene82548:intron |
| TTTAGGGTCACTGGTATATC+AGG | 0.359938 | 3.1:+58177561 | MS.gene82548:intron |
| GTTTGGACAATGCAGCTTCA+TGG | 0.372122 | 3.1:+58178167 | MS.gene82548:intron |
| TTCAGCCTCTATTGAGTTGA+GGG | 0.374285 | 3.1:+58175757 | MS.gene82548:CDS |
| ATCAAGAATAGCTTCCTTCA+TGG | 0.376096 | 3.1:+58178622 | MS.gene82548:CDS |
| ATATGGTGGATTCGTGGAAT+TGG | 0.378729 | 3.1:+58177369 | MS.gene82548:CDS |
| AGAGTGTCTGTTAAGATAGC+TGG | 0.378785 | 3.1:+58177432 | MS.gene82548:CDS |
| AAGAGTGTCCTCTTGTTGAT+TGG | 0.387771 | 3.1:+58178294 | MS.gene82548:CDS |
| TCATACAAGGAGTACAAATT+GGG | 0.388498 | 3.1:-58177614 | None:intergenic |
| CTATCTTAACAGACACTCTC+AGG | 0.403921 | 3.1:-58177428 | None:intergenic |
| TTGCAAGAAACTTCATACTT+TGG | 0.418663 | 3.1:-58177778 | None:intergenic |
| ACAATGCAGCTTCATGGATC+TGG | 0.426005 | 3.1:+58178173 | MS.gene82548:intron |
| CAGTGGTGAAGCATTCGATT+GGG | 0.429512 | 3.1:+58178442 | MS.gene82548:intron |
| ATAATTTCTGTAGGTTTGAA+AGG | 0.437678 | 3.1:+58177721 | MS.gene82548:intron |
| AATAAAGTTTGCTCCAGCTT+CGG | 0.441656 | 3.1:-58177908 | None:intergenic |
| TTCAACAACTGGGAGTTGCT+TGG | 0.446616 | 3.1:+58176067 | MS.gene82548:CDS |
| AGAGTGTCCTCTTGTTGATT+GGG | 0.454830 | 3.1:+58178295 | MS.gene82548:CDS |
| AGCTTCATGGATCTGGTTCG+CGG | 0.464460 | 3.1:+58178180 | MS.gene82548:intron |
| TCATCCACAAATACTCCAAC+AGG | 0.465466 | 3.1:-58178021 | None:intergenic |
| TTCCACAAAAGACCGATTCC+AGG | 0.472417 | 3.1:+58176107 | MS.gene82548:CDS |
| AAGCAAATATGGTTGGCTCT+TGG | 0.483948 | 3.1:+58178490 | MS.gene82548:CDS |
| ACAAGAGGACACTCTTCATC+AGG | 0.485369 | 3.1:-58178287 | None:intergenic |
| GTGGGTGTGTTCGGATATGG+TGG | 0.493398 | 3.1:+58177355 | MS.gene82548:CDS |
| AAATATGGTTGGCTCTTGGC+AGG | 0.497385 | 3.1:+58178494 | MS.gene82548:CDS |
| TGTTTCACTTTCTGTTGCAA+AGG | 0.498388 | 3.1:+58177963 | MS.gene82548:CDS |
| TTTGGACAAGAATGAGATTG+AGG | 0.499147 | 3.1:+58175724 | MS.gene82548:CDS |
| TCCAATTCCACTCGTAAAAG+AGG | 0.500369 | 3.1:-58177402 | None:intergenic |
| AAAGCCTCACGAACATTCTC+AGG | 0.505756 | 3.1:-58178527 | None:intergenic |
| TCAAAAGTTGCAAGAGATTG+TGG | 0.507409 | 3.1:+58177991 | MS.gene82548:CDS |
| TAGATAGTGCAAAGGGTGGC+AGG | 0.516369 | 3.1:+58178324 | MS.gene82548:CDS |
| GAGTGTCTGTTAAGATAGCT+GGG | 0.517565 | 3.1:+58177433 | MS.gene82548:CDS |
| AGAGCCTGTTGGAGTATTTG+TGG | 0.521575 | 3.1:+58178017 | MS.gene82548:CDS |
| ATCAAATCTTGAGTTTGTGC+AGG | 0.523243 | 3.1:+58178077 | MS.gene82548:CDS |
| GCAGTGGTGAAGCATTCGAT+TGG | 0.523251 | 3.1:+58178441 | MS.gene82548:intron |
| TTCTTGCAAACATACTGAGT+TGG | 0.523300 | 3.1:+58177792 | MS.gene82548:CDS |
| AAATGTTTCATGTTCATCAA+AGG | 0.525170 | 3.1:+58177816 | MS.gene82548:CDS |
| ATCAGCTAAAGATGCTGCTA+TGG | 0.526392 | 3.1:+58177882 | MS.gene82548:CDS |
| TCAGACCCTCAACTCAATAG+AGG | 0.527805 | 3.1:-58175762 | None:intergenic |
| GCTTCATGGATCTGGTTCGC+GGG | 0.535795 | 3.1:+58178181 | MS.gene82548:intron |
| AAGACCAGACTACCTGGAAT+CGG | 0.536235 | 3.1:-58176119 | None:intergenic |
| TCCACTCGTAAAAGAGGCAA+GGG | 0.536949 | 3.1:-58177396 | None:intergenic |
| CTTCAGCCTCTATTGAGTTG+AGG | 0.539160 | 3.1:+58175756 | MS.gene82548:CDS |
| AGAGACAAAACAAATACAAA+GGG | 0.540690 | 3.1:-58177584 | None:intergenic |
| AAGCCTTTGGTTAAGATGTG+TGG | 0.545538 | 3.1:+58177853 | MS.gene82548:CDS |
| GGCTCCCATCAGCATTTGCA+TGG | 0.555209 | 3.1:-58178250 | None:intergenic |
| CTACTGACATCCACTCCTCC+AGG | 0.559568 | 3.1:-58178563 | None:intergenic |
| GTTCTCCATGCAAATGCTGA+TGG | 0.559769 | 3.1:+58178245 | MS.gene82548:CDS |
| AAATTAGAAGCAAATATGGT+TGG | 0.569037 | 3.1:+58178483 | MS.gene82548:CDS |
| TTCCACTCGTAAAAGAGGCA+AGG | 0.570721 | 3.1:-58177397 | None:intergenic |
| TAGTCTCAAACCTGGAGGAG+TGG | 0.574489 | 3.1:+58178553 | MS.gene82548:CDS |
| AAGCTAATGCTTGATTTCCA+TGG | 0.577394 | 3.1:+58175680 | None:intergenic |
| TTTGTGCAGGTTCAACAACT+GGG | 0.577919 | 3.1:+58176057 | MS.gene82548:intron |
| AAGAGACAAAACAAATACAA+AGG | 0.580070 | 3.1:-58177585 | None:intergenic |
| GATTGTGGAGCAGAGCCTGT+TGG | 0.580954 | 3.1:+58178006 | MS.gene82548:CDS |
| GTTCGGATATGGTGGATTCG+TGG | 0.582221 | 3.1:+58177363 | MS.gene82548:CDS |
| ATGGTTGGCTCTTGGCAGGA+GGG | 0.589722 | 3.1:+58178498 | MS.gene82548:CDS |
| TATCTTAACAGACACTCTCA+GGG | 0.594360 | 3.1:-58177427 | None:intergenic |
| GTGAAGCCAATTTGTCACCA+TGG | 0.595385 | 3.1:-58175697 | None:intergenic |
| AGAATGTACTGCATCCATGA+AGG | 0.601091 | 3.1:-58178636 | None:intergenic |
| TGCATCAGATGGCATTCAGA+AGG | 0.604378 | 3.1:+58178595 | MS.gene82548:CDS |
| TATGGTTGGCTCTTGGCAGG+AGG | 0.607292 | 3.1:+58178497 | MS.gene82548:CDS |
| TTCTCCATGCAAATGCTGAT+GGG | 0.608881 | 3.1:+58178246 | MS.gene82548:CDS |
| GTTCTGGTAGATAGTGCAAA+GGG | 0.610316 | 3.1:+58178317 | MS.gene82548:CDS |
| AGCGGCATATGTGCATCAGA+TGG | 0.611930 | 3.1:+58178584 | MS.gene82548:CDS |
| ACCAGAACCCAATCAACAAG+AGG | 0.618958 | 3.1:-58178302 | None:intergenic |
| AGCTAAAGATGCTGCTATGG+CGG | 0.622801 | 3.1:+58177885 | MS.gene82548:CDS |
| GCTTTGTCTAGTCTCAAACC+TGG | 0.631502 | 3.1:+58178545 | MS.gene82548:CDS |
| GGTTCTGGTAGATAGTGCAA+AGG | 0.632272 | 3.1:+58178316 | MS.gene82548:CDS |
| CAAGGAGTACAAATTGGGGA+GGG | 0.634974 | 3.1:-58177609 | None:intergenic |
| ACTTTATTGGAATGATCGTG+TGG | 0.636931 | 3.1:+58177923 | MS.gene82548:CDS |
| ACAAGGAGTACAAATTGGGG+AGG | 0.638971 | 3.1:-58177610 | None:intergenic |
| ATGCCACACATCTTAACCAA+AGG | 0.642355 | 3.1:-58177856 | None:intergenic |
| TTAACCACCAAAATCATACA+AGG | 0.643616 | 3.1:-58177627 | None:intergenic |
| CATACAAGGAGTACAAATTG+GGG | 0.657722 | 3.1:-58177613 | None:intergenic |
| CAATCCTGAGAATGTTCGTG+AGG | 0.659098 | 3.1:+58178523 | MS.gene82548:CDS |
| CCACTCGTAAAAGAGGCAAG+GGG | 0.668551 | 3.1:-58177395 | None:intergenic |
| GGAGGAGTGGATGTCAGTAG+CGG | 0.679932 | 3.1:+58178566 | MS.gene82548:CDS |
| CACTCGTAAAAGAGGCAAGG+GGG | 0.687217 | 3.1:-58177394 | None:intergenic |
| CTGGTAGATAGTGCAAAGGG+TGG | 0.687302 | 3.1:+58178320 | MS.gene82548:CDS |
| TTGTCTAGTCTCAAACCTGG+AGG | 0.687383 | 3.1:+58178548 | MS.gene82548:CDS |
| AGTGTCTGTTAAGATAGCTG+GGG | 0.723904 | 3.1:+58177434 | MS.gene82548:CDS |
| ATCTTAACAGACACTCTCAG+GGG | 0.731126 | 3.1:-58177426 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TAATTTTTGGTAATTTAAAT+CGG | - | chr3.1:58178469-58178488 | None:intergenic | 10.0% |
| !! | ACTAAAAAAAAAAGATTGTT+TGG | - | chr3.1:58178388-58178407 | None:intergenic | 15.0% |
| !! | GATTTAAATATAATTTCTGT+AGG | + | chr3.1:58177712-58177731 | MS.gene82548:intron | 15.0% |
| !!! | AATTTTTGGTAATTTAAATC+GGG | - | chr3.1:58178468-58178487 | None:intergenic | 15.0% |
| !! | AATTTCTAACTAATTCTTCT+AGG | + | chr3.1:58175892-58175911 | MS.gene82548:intron | 20.0% |
| !! | CATTTAATAAAAAACCAATC+CGG | - | chr3.1:58177001-58177020 | None:intergenic | 20.0% |
| !! | TCTATAAAAGTTGTTTGATT+GGG | + | chr3.1:58176475-58176494 | MS.gene82548:intron | 20.0% |
| !! | TTCTATAAAAGTTGTTTGAT+TGG | + | chr3.1:58176474-58176493 | MS.gene82548:intron | 20.0% |
| !! | TTCTTTAAACTTTCAATCAA+AGG | - | chr3.1:58176627-58176646 | None:intergenic | 20.0% |
| !!! | AAGTTCTTTTTTGTAAATAC+GGG | + | chr3.1:58176973-58176992 | MS.gene82548:intron | 20.0% |
| !!! | GAAGTTCTTTTTTGTAAATA+CGG | + | chr3.1:58176972-58176991 | MS.gene82548:intron | 20.0% |
| ! | AAAAAAGAGAGGTAGAAAAT+AGG | - | chr3.1:58176729-58176748 | None:intergenic | 25.0% |
| ! | AAAACAAATTTCGAAGTACA+AGG | + | chr3.1:58177677-58177696 | MS.gene82548:intron | 25.0% |
| ! | AAATGTTTCATGTTCATCAA+AGG | + | chr3.1:58177816-58177835 | MS.gene82548:CDS | 25.0% |
| ! | AAATTAGAAGCAAATATGGT+TGG | + | chr3.1:58178483-58178502 | MS.gene82548:CDS | 25.0% |
| ! | AACTTTATGAATTGTAGAGA+GGG | + | chr3.1:58176534-58176553 | MS.gene82548:intron | 25.0% |
| ! | AAGAGACAAAACAAATACAA+AGG | - | chr3.1:58177588-58177607 | None:intergenic | 25.0% |
| ! | AGAGACAAAACAAATACAAA+GGG | - | chr3.1:58177587-58177606 | None:intergenic | 25.0% |
| ! | ATAATTTCTGTAGGTTTGAA+AGG | + | chr3.1:58177721-58177740 | MS.gene82548:intron | 25.0% |
| ! | CCAAAAATTAGAAGCAAATA+TGG | + | chr3.1:58178479-58178498 | MS.gene82548:CDS | 25.0% |
| ! | CTATAAAAGTTGTTTGATTG+GGG | + | chr3.1:58176476-58176495 | MS.gene82548:intron | 25.0% |
| ! | TCTTGATTAGGATATCTTTA+TGG | - | chr3.1:58175798-58175817 | None:intergenic | 25.0% |
| !! | AGAGATTAGTTAATGCATTT+AGG | - | chr3.1:58175934-58175953 | None:intergenic | 25.0% |
| !! | CCATATTTGCTTCTAATTTT+TGG | - | chr3.1:58178482-58178501 | None:intergenic | 25.0% |
| !!! | CAATTTTCTAGCATAAGATT+CGG | + | chr3.1:58177754-58177773 | MS.gene82548:CDS | 25.0% |
| !!! | TATATTGTTTGAAAGCATCA+TGG | + | chr3.1:58176243-58176262 | MS.gene82548:intron | 25.0% |
| AAAGAAGAAGCTAAACTCTT+GGG | + | chr3.1:58176641-58176660 | MS.gene82548:intron | 30.0% | |
| AATAGGAATTGCATTCAACA+CGG | - | chr3.1:58176712-58176731 | None:intergenic | 30.0% | |
| ACTTGAAAAGATTAAGCCTT+TGG | + | chr3.1:58177840-58177859 | MS.gene82548:CDS | 30.0% | |
| AGAGGAAATAAGCATCAATA+CGG | + | chr3.1:58176324-58176343 | MS.gene82548:intron | 30.0% | |
| AGTTTAGTGGAGAATCTTAT+GGG | + | chr3.1:58177320-58177339 | MS.gene82548:intron | 30.0% | |
| ATTCAACGAGAATTTCTATG+GGG | + | chr3.1:58176786-58176805 | MS.gene82548:intron | 30.0% | |
| CAACTTTATGAATTGTAGAG+AGG | + | chr3.1:58176533-58176552 | MS.gene82548:intron | 30.0% | |
| CACAAGAACAATAATGTACA+TGG | - | chr3.1:58176015-58176034 | None:intergenic | 30.0% | |
| CATCAGGAATTGTGTTTAAA+AGG | - | chr3.1:58178274-58178293 | None:intergenic | 30.0% | |
| GATTCAACGAGAATTTCTAT+GGG | + | chr3.1:58176785-58176804 | MS.gene82548:intron | 30.0% | |
| TAAAGAAGAAGCTAAACTCT+TGG | + | chr3.1:58176640-58176659 | MS.gene82548:intron | 30.0% | |
| TAAATGCGTATGCAAATTTG+TGG | + | chr3.1:58177015-58177034 | MS.gene82548:intron | 30.0% | |
| TAGAGTCCATAAAATATCGA+CGG | - | chr3.1:58176406-58176425 | None:intergenic | 30.0% | |
| TAGTTAATGCATTTAGGAGT+CGG | - | chr3.1:58175928-58175947 | None:intergenic | 30.0% | |
| TATGAAACTAAACCTACATG+AGG | - | chr3.1:58176215-58176234 | None:intergenic | 30.0% | |
| TGACATTGAAATCTTGAGTT+TGG | + | chr3.1:58178150-58178169 | MS.gene82548:intron | 30.0% | |
| TGAGGCTTTCATTTAAATAG+TGG | - | chr3.1:58176294-58176313 | None:intergenic | 30.0% | |
| TTAAATGAAAGCCTCATGAA+GGG | + | chr3.1:58176298-58176317 | MS.gene82548:intron | 30.0% | |
| TTAACCACCAAAATCATACA+AGG | - | chr3.1:58177630-58177649 | None:intergenic | 30.0% | |
| TTAGAAATTGAGAAGAGTCT+CGG | - | chr3.1:58177203-58177222 | None:intergenic | 30.0% | |
| TTGCAAGAAACTTCATACTT+TGG | - | chr3.1:58177781-58177800 | None:intergenic | 30.0% | |
| TTTAAATGAAAGCCTCATGA+AGG | + | chr3.1:58176297-58176316 | MS.gene82548:intron | 30.0% | |
| ! | AAAAGAAAACCTAACTTGCA+AGG | - | chr3.1:58176039-58176058 | None:intergenic | 30.0% |
| ! | ATCATACAAGGAGTACAAAT+TGG | - | chr3.1:58177618-58177637 | None:intergenic | 30.0% |
| ! | CGATATTTTATGGACTCTAA+AGG | + | chr3.1:58176407-58176426 | MS.gene82548:intron | 30.0% |
| ! | GATTTTCCTGAATCAAAGAT+GGG | - | chr3.1:58178214-58178233 | None:intergenic | 30.0% |
| ! | TCATACAAGGAGTACAAATT+GGG | - | chr3.1:58177617-58177636 | None:intergenic | 30.0% |
| ! | TTGTACTCCTTGTATGATTT+TGG | + | chr3.1:58177620-58177639 | MS.gene82548:CDS | 30.0% |
| !! | TTTTGGTTAGATCATTGGAT+GGG | + | chr3.1:58177152-58177171 | MS.gene82548:intron | 30.0% |
| AAATAAGCATCAATACGGGT+TGG | + | chr3.1:58176329-58176348 | MS.gene82548:intron | 35.0% | |
| AACAAATATGTGAGTCTAGG+AGG | + | chr3.1:58176666-58176685 | MS.gene82548:intron | 35.0% | |
| AACCAAAAAGACGCTTTAGT+GGG | + | chr3.1:58177221-58177240 | MS.gene82548:intron | 35.0% | |
| AAGAAGAAGCTAAACTCTTG+GGG | + | chr3.1:58176642-58176661 | MS.gene82548:intron | 35.0% | |
| AATCTTATGGGGGATTTAGA+GGG | + | chr3.1:58177332-58177351 | MS.gene82548:intron | 35.0% | |
| ACTTTATTGGAATGATCGTG+TGG | + | chr3.1:58177923-58177942 | MS.gene82548:CDS | 35.0% | |
| AGAGAAGAAGAGAGAATTTG+TGG | + | chr3.1:58175815-58175834 | MS.gene82548:intron | 35.0% | |
| ATCAAATCTTGAGTTTGTGC+AGG | + | chr3.1:58178077-58178096 | MS.gene82548:CDS | 35.0% | |
| ATCAAGAATAGCTTCCTTCA+TGG | + | chr3.1:58178622-58178641 | MS.gene82548:CDS | 35.0% | |
| CGTTGAACATGCATAAAAGT+CGG | - | chr3.1:58178114-58178133 | None:intergenic | 35.0% | |
| GAGGAAATAAGCATCAATAC+GGG | + | chr3.1:58176325-58176344 | MS.gene82548:intron | 35.0% | |
| GAGTTTAGTGGAGAATCTTA+TGG | + | chr3.1:58177319-58177338 | MS.gene82548:intron | 35.0% | |
| GCAATGTTTACCAAGCAAAT+TGG | - | chr3.1:58175845-58175864 | None:intergenic | 35.0% | |
| GGATTCAACGAGAATTTCTA+TGG | + | chr3.1:58176784-58176803 | MS.gene82548:intron | 35.0% | |
| GTTGAACATGCATAAAAGTC+GGG | - | chr3.1:58178113-58178132 | None:intergenic | 35.0% | |
| GTTTAGTGGAGAATCTTATG+GGG | + | chr3.1:58177321-58177340 | MS.gene82548:intron | 35.0% | |
| TAAATAAAGACCAGACTACC+TGG | - | chr3.1:58176128-58176147 | None:intergenic | 35.0% | |
| TAACCAAAAAGACGCTTTAG+TGG | + | chr3.1:58177220-58177239 | MS.gene82548:intron | 35.0% | |
| TATCTTAACAGACACTCTCA+GGG | - | chr3.1:58177430-58177449 | None:intergenic | 35.0% | |
| TCAAAAGTTGCAAGAGATTG+TGG | + | chr3.1:58177991-58178010 | MS.gene82548:CDS | 35.0% | |
| TCCAATGATCTAACCAAAAC+CGG | - | chr3.1:58177151-58177170 | None:intergenic | 35.0% | |
| TCTCGGATAAGAAACACAAA+GGG | - | chr3.1:58177186-58177205 | None:intergenic | 35.0% | |
| TCTCTCCCGTTTAAGTATTT+GGG | + | chr3.1:58176558-58176577 | MS.gene82548:intron | 35.0% | |
| TCTCTCTTCTTCTCTTGATT+AGG | - | chr3.1:58175810-58175829 | None:intergenic | 35.0% | |
| TGAGTATATTGTCTCTCTTC+TGG | + | chr3.1:58176149-58176168 | MS.gene82548:intron | 35.0% | |
| TGATTTCCATGGTGACAAAT+TGG | + | chr3.1:58175691-58175710 | MS.gene82548:CDS | 35.0% | |
| TGTTTCACTTTCTGTTGCAA+AGG | + | chr3.1:58177963-58177982 | MS.gene82548:CDS | 35.0% | |
| TGTTTGATTGGGGTTAATGT+TGG | + | chr3.1:58176486-58176505 | MS.gene82548:intron | 35.0% | |
| TTCAACGACAGTTAAATGCT+TGG | + | chr3.1:58178127-58178146 | MS.gene82548:intron | 35.0% | |
| TTCTTGCAAACATACTGAGT+TGG | + | chr3.1:58177792-58177811 | MS.gene82548:CDS | 35.0% | |
| TTGTTAGGTAAAGTGGAAGA+CGG | + | chr3.1:58176833-58176852 | MS.gene82548:intron | 35.0% | |
| TTTAGTGGAGAATCTTATGG+GGG | + | chr3.1:58177322-58177341 | MS.gene82548:intron | 35.0% | |
| TTTGGACAAGAATGAGATTG+AGG | + | chr3.1:58175724-58175743 | MS.gene82548:CDS | 35.0% | |
| TTTGGGAGTTAGAGATGTTA+GGG | + | chr3.1:58176881-58176900 | MS.gene82548:intron | 35.0% | |
| ! | AATAAAGTTTGCTCCAGCTT+CGG | - | chr3.1:58177911-58177930 | None:intergenic | 35.0% |
| ! | CAAATTGGCTTCACTGAATT+TGG | + | chr3.1:58175706-58175725 | MS.gene82548:CDS | 35.0% |
| ! | CATACAAGGAGTACAAATTG+GGG | - | chr3.1:58177616-58177635 | None:intergenic | 35.0% |
| ! | CGATTTTCCTGAATCAAAGA+TGG | - | chr3.1:58178215-58178234 | None:intergenic | 35.0% |
| ! | GTGCTTGCATTTCTGTTTTA+GGG | + | chr3.1:58177545-58177564 | MS.gene82548:intron | 35.0% |
| ! | GTTAGGTTTTCTTTTTGTGC+AGG | + | chr3.1:58176044-58176063 | MS.gene82548:intron | 35.0% |
| ! | TACTCCTTGTATGATTTTGG+TGG | + | chr3.1:58177623-58177642 | MS.gene82548:CDS | 35.0% |
| ! | TGTGCTTGCATTTCTGTTTT+AGG | + | chr3.1:58177544-58177563 | MS.gene82548:intron | 35.0% |
| ! | TGTTTTCTGTCTTCAGATGT+AGG | + | chr3.1:58177484-58177503 | MS.gene82548:intron | 35.0% |
| ! | TTGTGGTAAACCAATTTGCT+TGG | + | chr3.1:58175832-58175851 | MS.gene82548:intron | 35.0% |
| !! | AGAAGGTTTGTTAGGTAAAG+TGG | + | chr3.1:58176826-58176845 | MS.gene82548:intron | 35.0% |
| !! | TCCGATACAAAGAGTATCAT+CGG | - | chr3.1:58176376-58176395 | None:intergenic | 35.0% |
| !! | TTTGAAAGCATCATGGATCT+AGG | + | chr3.1:58176250-58176269 | MS.gene82548:intron | 35.0% |
| !!! | CCTCTCTTTTTTCAAAATGC+CGG | + | chr3.1:58176737-58176756 | MS.gene82548:intron | 35.0% |
| !!! | GAAACAGAACGTTTTGAGTT+TGG | - | chr3.1:58177949-58177968 | None:intergenic | 35.0% |
| !!! | GTTTTGGTTAGATCATTGGA+TGG | + | chr3.1:58177151-58177170 | MS.gene82548:intron | 35.0% |
| !!! | TTTTTTGTAAATACGGGAGC+CGG | + | chr3.1:58176979-58176998 | MS.gene82548:intron | 35.0% |
| AAGCCTTTGGTTAAGATGTG+TGG | + | chr3.1:58177853-58177872 | MS.gene82548:CDS | 40.0% | |
| AAGTGTGGAAGAGAATTGTG+AGG | + | chr3.1:58176763-58176782 | MS.gene82548:intron | 40.0% | |
| AATATGTGAGTCTAGGAGGA+AGG | + | chr3.1:58176670-58176689 | MS.gene82548:intron | 40.0% | |
| AGAATGTACTGCATCCATGA+AGG | - | chr3.1:58178639-58178658 | None:intergenic | 40.0% | |
| AGATCATTGGATGGGAAATG+CGG | + | chr3.1:58177160-58177179 | MS.gene82548:intron | 40.0% | |
| AGCTTTCCCATCTTTGATTC+AGG | + | chr3.1:58178205-58178224 | MS.gene82548:CDS | 40.0% | |
| AGTGTCTGTTAAGATAGCTG+GGG | + | chr3.1:58177434-58177453 | MS.gene82548:CDS | 40.0% | |
| ATCAGCTAAAGATGCTGCTA+TGG | + | chr3.1:58177882-58177901 | MS.gene82548:CDS | 40.0% | |
| ATCTTAACAGACACTCTCAG+GGG | - | chr3.1:58177429-58177448 | None:intergenic | 40.0% | |
| ATCTTATGGGGGATTTAGAG+GGG | + | chr3.1:58177333-58177352 | MS.gene82548:intron | 40.0% | |
| ATGCCACACATCTTAACCAA+AGG | - | chr3.1:58177859-58177878 | None:intergenic | 40.0% | |
| ATTCTCTTCCACACTTTCAC+CGG | - | chr3.1:58176759-58176778 | None:intergenic | 40.0% | |
| CCAAGTAGCTACATGAATTG+TGG | - | chr3.1:58175965-58175984 | None:intergenic | 40.0% | |
| CCAATGATCTAACCAAAACC+GGG | - | chr3.1:58177150-58177169 | None:intergenic | 40.0% | |
| CCACAATTCATGTAGCTACT+TGG | + | chr3.1:58175962-58175981 | MS.gene82548:intron | 40.0% | |
| CTATCTTAACAGACACTCTC+AGG | - | chr3.1:58177431-58177450 | None:intergenic | 40.0% | |
| CTCATGAGATGTATTTGCAG+TGG | + | chr3.1:58178425-58178444 | MS.gene82548:intron | 40.0% | |
| CTCTCCCGTTTAAGTATTTG+GGG | + | chr3.1:58176559-58176578 | MS.gene82548:intron | 40.0% | |
| CTCTCTCCCGTTTAAGTATT+TGG | + | chr3.1:58176557-58176576 | MS.gene82548:intron | 40.0% | |
| GAAGCTGGAGCAAACTTTAT+TGG | + | chr3.1:58177910-58177929 | MS.gene82548:CDS | 40.0% | |
| GAATCTTATGGGGGATTTAG+AGG | + | chr3.1:58177331-58177350 | MS.gene82548:intron | 40.0% | |
| GAGTGTCTGTTAAGATAGCT+GGG | + | chr3.1:58177433-58177452 | MS.gene82548:CDS | 40.0% | |
| GATTGGGGTTAATGTTGGAA+GGG | + | chr3.1:58176491-58176510 | MS.gene82548:intron | 40.0% | |
| GCACTTGGAATCTTATATGG+AGG | + | chr3.1:58177273-58177292 | MS.gene82548:intron | 40.0% | |
| GCCGATGATACTCTTTGTAT+CGG | + | chr3.1:58176372-58176391 | MS.gene82548:intron | 40.0% | |
| GGCAACAAATATGTGAGTCT+AGG | + | chr3.1:58176663-58176682 | MS.gene82548:intron | 40.0% | |
| GGTAGCCCCAAATACTTAAA+CGG | - | chr3.1:58176567-58176586 | None:intergenic | 40.0% | |
| GTAGCCCCAAATACTTAAAC+GGG | - | chr3.1:58176566-58176585 | None:intergenic | 40.0% | |
| GTCTCGGATAAGAAACACAA+AGG | - | chr3.1:58177187-58177206 | None:intergenic | 40.0% | |
| GTTCTGGTAGATAGTGCAAA+GGG | + | chr3.1:58178317-58178336 | MS.gene82548:CDS | 40.0% | |
| GTTTGGGAGTTAGAGATGTT+AGG | + | chr3.1:58176880-58176899 | MS.gene82548:intron | 40.0% | |
| TCATCCACAAATACTCCAAC+AGG | - | chr3.1:58178024-58178043 | None:intergenic | 40.0% | |
| TCCAATTCCACTCGTAAAAG+AGG | - | chr3.1:58177405-58177424 | None:intergenic | 40.0% | |
| TGATACTCTTTGTATCGGAG+AGG | + | chr3.1:58176377-58176396 | MS.gene82548:intron | 40.0% | |
| TGATTGGGGTTAATGTTGGA+AGG | + | chr3.1:58176490-58176509 | MS.gene82548:intron | 40.0% | |
| TTCTCCATGCAAATGCTGAT+GGG | + | chr3.1:58178246-58178265 | MS.gene82548:CDS | 40.0% | |
| TTCTTGTGACCTTGCAAGTT+AGG | + | chr3.1:58176027-58176046 | MS.gene82548:intron | 40.0% | |
| TTGGATGTGGTAACTTTGGA+AGG | + | chr3.1:58177062-58177081 | MS.gene82548:intron | 40.0% | |
| TTTGTGCAGGTTCAACAACT+GGG | + | chr3.1:58176057-58176076 | MS.gene82548:intron | 40.0% | |
| ! | AAGCAAATATGGTTGGCTCT+TGG | + | chr3.1:58178490-58178509 | MS.gene82548:CDS | 40.0% |
| ! | AGAGTGTCCTCTTGTTGATT+GGG | + | chr3.1:58178295-58178314 | MS.gene82548:CDS | 40.0% |
| ! | AGAGTGTCTGTTAAGATAGC+TGG | + | chr3.1:58177432-58177451 | MS.gene82548:CDS | 40.0% |
| ! | AGGCATCCGTCGATATTTTA+TGG | + | chr3.1:58176397-58176416 | MS.gene82548:intron | 40.0% |
| ! | GAAGCACTTATTCCTCATGT+AGG | + | chr3.1:58176200-58176219 | MS.gene82548:intron | 40.0% |
| ! | GAGGCACTTGGAATCTTATA+TGG | + | chr3.1:58177270-58177289 | MS.gene82548:intron | 40.0% |
| ! | GGGTGCGAATTGGTTTAATA+CGG | + | chr3.1:58177091-58177110 | MS.gene82548:intron | 40.0% |
| ! | TGCGAATTGGTTTAATACGG+AGG | + | chr3.1:58177094-58177113 | MS.gene82548:intron | 40.0% |
| ! | TTTAGGGTCACTGGTATATC+AGG | + | chr3.1:58177561-58177580 | MS.gene82548:intron | 40.0% |
| ! | TTTTGTGCAGGTTCAACAAC+TGG | + | chr3.1:58176056-58176075 | MS.gene82548:intron | 40.0% |
| !! | AAGAGTGTCCTCTTGTTGAT+TGG | + | chr3.1:58178294-58178313 | MS.gene82548:CDS | 40.0% |
| !! | ATATGGTGGATTCGTGGAAT+TGG | + | chr3.1:58177369-58177388 | MS.gene82548:CDS | 40.0% |
| !! | CCGGCATTTTGAAAAAAGAG+AGG | - | chr3.1:58176740-58176759 | None:intergenic | 40.0% |
| !! | TTCAGCCTCTATTGAGTTGA+GGG | + | chr3.1:58175757-58175776 | MS.gene82548:CDS | 40.0% |
| !! | TTTAGTGGGTGATCTTTTGG+AGG | + | chr3.1:58177235-58177254 | MS.gene82548:intron | 40.0% |
| !!! | CATTTCTGTTTTAGGGTCAC+TGG | + | chr3.1:58177552-58177571 | MS.gene82548:intron | 40.0% |
| !!! | GTTGCTTAGAGGTTTTGAGA+TGG | + | chr3.1:58176431-58176450 | MS.gene82548:intron | 40.0% |
| !!! | TAGAGGTTTTGAGATGGTGT+CGG | + | chr3.1:58176437-58176456 | MS.gene82548:intron | 40.0% |
| AAAGCCTCACGAACATTCTC+AGG | - | chr3.1:58178530-58178549 | None:intergenic | 45.0% | |
| AAGACCAGACTACCTGGAAT+CGG | - | chr3.1:58176122-58176141 | None:intergenic | 45.0% | |
| ACAAGAGGACACTCTTCATC+AGG | - | chr3.1:58178290-58178309 | None:intergenic | 45.0% | |
| ACAATGCAGCTTCATGGATC+TGG | + | chr3.1:58178173-58178192 | MS.gene82548:intron | 45.0% | |
| ACCAGAACCCAATCAACAAG+AGG | - | chr3.1:58178305-58178324 | None:intergenic | 45.0% | |
| ACGAGAATTTCTATGGGGAG+CGG | + | chr3.1:58176791-58176810 | MS.gene82548:intron | 45.0% | |
| AGCTAAAGATGCTGCTATGG+CGG | + | chr3.1:58177885-58177904 | MS.gene82548:CDS | 45.0% | |
| ATCCGAAGAAGATGGGTACT+TGG | + | chr3.1:58176598-58176617 | MS.gene82548:intron | 45.0% | |
| CAATCCTGAGAATGTTCGTG+AGG | + | chr3.1:58178523-58178542 | MS.gene82548:CDS | 45.0% | |
| GAGTATCATCGGCGTATTGA+AGG | - | chr3.1:58176365-58176384 | None:intergenic | 45.0% | |
| GCTTTGTCTAGTCTCAAACC+TGG | + | chr3.1:58178545-58178564 | MS.gene82548:CDS | 45.0% | |
| GGTTTAATACGGAGGTTGTG+CGG | + | chr3.1:58177102-58177121 | MS.gene82548:intron | 45.0% | |
| GTGAAGCCAATTTGTCACCA+TGG | - | chr3.1:58175700-58175719 | None:intergenic | 45.0% | |
| GTGGTTGGATGTGGTAACTT+TGG | + | chr3.1:58177058-58177077 | MS.gene82548:intron | 45.0% | |
| GTTCTCCATGCAAATGCTGA+TGG | + | chr3.1:58178245-58178264 | MS.gene82548:CDS | 45.0% | |
| GTTTGGACAATGCAGCTTCA+TGG | + | chr3.1:58178167-58178186 | MS.gene82548:intron | 45.0% | |
| TCAAAATGCCGGTGAAAGTG+TGG | + | chr3.1:58176748-58176767 | MS.gene82548:intron | 45.0% | |
| TCAGACCCTCAACTCAATAG+AGG | - | chr3.1:58175765-58175784 | None:intergenic | 45.0% | |
| TCCACTCGTAAAAGAGGCAA+GGG | - | chr3.1:58177399-58177418 | None:intergenic | 45.0% | |
| TCCCAAGTACCCATCTTCTT+CGG | - | chr3.1:58176603-58176622 | None:intergenic | 45.0% | |
| TCCGAAGAAGATGGGTACTT+GGG | + | chr3.1:58176599-58176618 | MS.gene82548:intron | 45.0% | |
| TCCTTCCAAAGTGAATGCTC+CGG | - | chr3.1:58176954-58176973 | None:intergenic | 45.0% | |
| TGCATCAGATGGCATTCAGA+AGG | + | chr3.1:58178595-58178614 | MS.gene82548:CDS | 45.0% | |
| TGGAAGGGAGTTCATAGAGA+TGG | + | chr3.1:58176506-58176525 | MS.gene82548:intron | 45.0% | |
| TGGGAAATGGGATGAATACC+CGG | + | chr3.1:58177129-58177148 | MS.gene82548:intron | 45.0% | |
| TTCAACAACTGGGAGTTGCT+TGG | + | chr3.1:58176067-58176086 | MS.gene82548:CDS | 45.0% | |
| TTCCACTCGTAAAAGAGGCA+AGG | - | chr3.1:58177400-58177419 | None:intergenic | 45.0% | |
| TTGTCTAGTCTCAAACCTGG+AGG | + | chr3.1:58178548-58178567 | MS.gene82548:CDS | 45.0% | |
| TTTCCTCTCATCCCTTCATG+AGG | - | chr3.1:58176312-58176331 | None:intergenic | 45.0% | |
| ! | AAATATGGTTGGCTCTTGGC+AGG | + | chr3.1:58178494-58178513 | MS.gene82548:CDS | 45.0% |
| ! | AAGTATTTGGGGCTACCGAT+GGG | + | chr3.1:58176570-58176589 | MS.gene82548:intron | 45.0% |
| ! | ACAAGGAGTACAAATTGGGG+AGG | - | chr3.1:58177613-58177632 | None:intergenic | 45.0% |
| ! | AGAGCCTGTTGGAGTATTTG+TGG | + | chr3.1:58178017-58178036 | MS.gene82548:CDS | 45.0% |
| ! | ATGGGATGAATACCCGGTTT+TGG | + | chr3.1:58177135-58177154 | MS.gene82548:intron | 45.0% |
| ! | CAAGGAGTACAAATTGGGGA+GGG | - | chr3.1:58177612-58177631 | None:intergenic | 45.0% |
| ! | CAGTGGTGAAGCATTCGATT+GGG | + | chr3.1:58178442-58178461 | MS.gene82548:intron | 45.0% |
| ! | CGGTCTTTTGTGGAAGTTTG+TGG | - | chr3.1:58176102-58176121 | None:intergenic | 45.0% |
| ! | CTTCAGCCTCTATTGAGTTG+AGG | + | chr3.1:58175756-58175775 | MS.gene82548:CDS | 45.0% |
| ! | GCCTCTTTTACGAGTGGAAT+TGG | + | chr3.1:58177401-58177420 | MS.gene82548:CDS | 45.0% |
| ! | GGGAGGAAAGAAGGTTTGTT+AGG | + | chr3.1:58176818-58176837 | MS.gene82548:intron | 45.0% |
| ! | GGTTCTGGTAGATAGTGCAA+AGG | + | chr3.1:58178316-58178335 | MS.gene82548:CDS | 45.0% |
| ! | TAAGTATTTGGGGCTACCGA+TGG | + | chr3.1:58176569-58176588 | MS.gene82548:intron | 45.0% |
| ! | TACAACCGGAGCATTCACTT+TGG | + | chr3.1:58176946-58176965 | MS.gene82548:intron | 45.0% |
| ! | TACCTGGAATCGGTCTTTTG+TGG | - | chr3.1:58176112-58176131 | None:intergenic | 45.0% |
| ! | TCCTCTTGTTGATTGGGTTC+TGG | + | chr3.1:58178301-58178320 | MS.gene82548:CDS | 45.0% |
| ! | TGTGGTAACTTTGGAAGGAG+TGG | + | chr3.1:58177067-58177086 | MS.gene82548:intron | 45.0% |
| ! | TTCCACAAAAGACCGATTCC+AGG | + | chr3.1:58176107-58176126 | MS.gene82548:CDS | 45.0% |
| !! | ACTCTAAAGGCGTTGCTTAG+AGG | + | chr3.1:58176420-58176439 | MS.gene82548:intron | 45.0% |
| !! | CACCCACTAAAGCGTCTTTT+TGG | - | chr3.1:58177226-58177245 | None:intergenic | 45.0% |
| !! | CGCTTTAGTGGGTGATCTTT+TGG | + | chr3.1:58177232-58177251 | MS.gene82548:intron | 45.0% |
| !! | TAAGCATCAATACGGGTTGG+TGG | + | chr3.1:58176332-58176351 | MS.gene82548:intron | 45.0% |
| !!! | AGAGGTTTTGAGATGGTGTC+GGG | + | chr3.1:58176438-58176457 | MS.gene82548:intron | 45.0% |
| !!! | CCCGGTTTTGGTTAGATCAT+TGG | + | chr3.1:58177147-58177166 | MS.gene82548:intron | 45.0% |
| !!! | GGGCAGTTTTAGAGGTGTTT+TGG | + | chr3.1:58177454-58177473 | MS.gene82548:intron | 45.0% |
| AAGCCTCATGAAGGGATGAG+AGG | + | chr3.1:58176306-58176325 | MS.gene82548:intron | 50.0% | |
| ACTGCTTCTGTCATGACAGC+AGG | + | chr3.1:58177508-58177527 | MS.gene82548:intron | 50.0% | |
| AGCGGCATATGTGCATCAGA+TGG | + | chr3.1:58178584-58178603 | MS.gene82548:CDS | 50.0% | |
| ATGTGAGTCGTTTGGCGAAG+TGG | + | chr3.1:58176910-58176929 | MS.gene82548:intron | 50.0% | |
| ATTCCAAGTGCCTCCTCCTA+CGG | - | chr3.1:58177264-58177283 | None:intergenic | 50.0% | |
| ATTTCTATGGGGAGCGGTGA+AGG | + | chr3.1:58176797-58176816 | MS.gene82548:intron | 50.0% | |
| CACTCGTAAAAGAGGCAAGG+GGG | - | chr3.1:58177397-58177416 | None:intergenic | 50.0% | |
| CCACTCGTAAAAGAGGCAAG+GGG | - | chr3.1:58177398-58177417 | None:intergenic | 50.0% | |
| CGTGTGGGAAGAGAGTTTAG+TGG | + | chr3.1:58177307-58177326 | MS.gene82548:intron | 50.0% | |
| CTCCCAAACCTCCTAAAGAC+CGG | - | chr3.1:58176869-58176888 | None:intergenic | 50.0% | |
| CTGCTTCTGTCATGACAGCA+GGG | + | chr3.1:58177509-58177528 | MS.gene82548:intron | 50.0% | |
| CTGGTAGATAGTGCAAAGGG+TGG | + | chr3.1:58178320-58178339 | MS.gene82548:CDS | 50.0% | |
| GAGGCGAAAACTGTTCGTGT+GGG | + | chr3.1:58177292-58177311 | MS.gene82548:intron | 50.0% | |
| GAGGTGGAGGCTAATACAAC+CGG | + | chr3.1:58176932-58176951 | MS.gene82548:intron | 50.0% | |
| GGAGCGAATCCGAAGAAGAT+GGG | + | chr3.1:58176591-58176610 | MS.gene82548:intron | 50.0% | |
| GGGAGTTAGAGATGTTAGGG+TGG | + | chr3.1:58176884-58176903 | MS.gene82548:intron | 50.0% | |
| GGTGGTGAATGTGAGTCGTT+TGG | + | chr3.1:58176902-58176921 | MS.gene82548:intron | 50.0% | |
| TAATACGGAGGTTGTGCGGA+AGG | + | chr3.1:58177106-58177125 | MS.gene82548:intron | 50.0% | |
| TAGATAGTGCAAAGGGTGGC+AGG | + | chr3.1:58178324-58178343 | MS.gene82548:CDS | 50.0% | |
| TAGTCTCAAACCTGGAGGAG+TGG | + | chr3.1:58178553-58178572 | MS.gene82548:CDS | 50.0% | |
| TATGGGGGATTTAGAGGGGT+GGG | + | chr3.1:58177337-58177356 | MS.gene82548:intron | 50.0% | |
| TCCCAAACCTCCTAAAGACC+GGG | - | chr3.1:58176868-58176887 | None:intergenic | 50.0% | |
| TGTAAATACGGGAGCCGGAT+TGG | + | chr3.1:58176984-58177003 | MS.gene82548:intron | 50.0% | |
| TGTGAGTCTAGGAGGAAGGA+TGG | + | chr3.1:58176674-58176693 | MS.gene82548:intron | 50.0% | |
| TTATGGGGGATTTAGAGGGG+TGG | + | chr3.1:58177336-58177355 | MS.gene82548:intron | 50.0% | |
| TTCTTCGGATTCGCTCCCAT+CGG | - | chr3.1:58176588-58176607 | None:intergenic | 50.0% | |
| TTGTGCGGAAGGTGGGAAAT+GGG | + | chr3.1:58177117-58177136 | MS.gene82548:intron | 50.0% | |
| TTTAGAGGGGTGGGTGTGTT+CGG | + | chr3.1:58177346-58177365 | MS.gene82548:intron | 50.0% | |
| TTTCTATGGGGAGCGGTGAA+GGG | + | chr3.1:58176798-58176817 | MS.gene82548:intron | 50.0% | |
| ! | AAGACCGATTCCAGGTAGTC+TGG | + | chr3.1:58176115-58176134 | MS.gene82548:intron | 50.0% |
| ! | ACCGGAGCATTCACTTTGGA+AGG | + | chr3.1:58176950-58176969 | MS.gene82548:intron | 50.0% |
| ! | AGCTTCATGGATCTGGTTCG+CGG | + | chr3.1:58178180-58178199 | MS.gene82548:intron | 50.0% |
| ! | GCAGTGGTGAAGCATTCGAT+TGG | + | chr3.1:58178441-58178460 | MS.gene82548:intron | 50.0% |
| ! | GGTAACTTTGGAAGGAGTGG+CGG | + | chr3.1:58177070-58177089 | MS.gene82548:intron | 50.0% |
| ! | GTAACTTTGGAAGGAGTGGC+GGG | + | chr3.1:58177071-58177090 | MS.gene82548:intron | 50.0% |
| ! | TGAGATGGTGTCGGGTTTGA+AGG | + | chr3.1:58176446-58176465 | MS.gene82548:intron | 50.0% |
| !! | GATAGCTGGGGCAGTTTTAG+AGG | + | chr3.1:58177446-58177465 | MS.gene82548:CDS | 50.0% |
| !! | GATCTTTTGGAGGCAACCGT+AGG | + | chr3.1:58177245-58177264 | MS.gene82548:intron | 50.0% |
| !! | GTTCGGATATGGTGGATTCG+TGG | + | chr3.1:58177363-58177382 | MS.gene82548:CDS | 50.0% |
| !! | TTTTGCTTCGAGGTGGTGGT+TGG | + | chr3.1:58177043-58177062 | MS.gene82548:intron | 50.0% |
| AGCGGTGAAGGGAGGAAAGA+AGG | + | chr3.1:58176809-58176828 | MS.gene82548:intron | 55.0% | |
| CACCACCTCGAAGCAAAAGC+TGG | - | chr3.1:58177041-58177060 | None:intergenic | 55.0% | |
| CCCAAACCTCCTAAAGACCG+GGG | - | chr3.1:58176867-58176886 | None:intergenic | 55.0% | |
| CTACTGACATCCACTCCTCC+AGG | - | chr3.1:58178566-58178585 | None:intergenic | 55.0% | |
| GATTGTGGAGCAGAGCCTGT+TGG | + | chr3.1:58178006-58178025 | MS.gene82548:CDS | 55.0% | |
| GGAGGAGTGGATGTCAGTAG+CGG | + | chr3.1:58178566-58178585 | MS.gene82548:CDS | 55.0% | |
| GGAGGCGAAAACTGTTCGTG+TGG | + | chr3.1:58177291-58177310 | MS.gene82548:intron | 55.0% | |
| GGCTCCCATCAGCATTTGCA+TGG | - | chr3.1:58178253-58178272 | None:intergenic | 55.0% | |
| GGGAGCGAATCCGAAGAAGA+TGG | + | chr3.1:58176590-58176609 | MS.gene82548:intron | 55.0% | |
| GTGGGTGTGTTCGGATATGG+TGG | + | chr3.1:58177355-58177374 | MS.gene82548:CDS | 55.0% | |
| GTGTGTCAACCCCGGTCTTT+AGG | + | chr3.1:58176855-58176874 | MS.gene82548:intron | 55.0% | |
| GTTGTGCGGAAGGTGGGAAA+TGG | + | chr3.1:58177116-58177135 | MS.gene82548:intron | 55.0% | |
| TGAGTCGTTTGGCGAAGTGG+AGG | + | chr3.1:58176913-58176932 | MS.gene82548:intron | 55.0% | |
| TGTCAACCCCGGTCTTTAGG+AGG | + | chr3.1:58176858-58176877 | MS.gene82548:intron | 55.0% | |
| ! | ACCCCGGTCTTTAGGAGGTT+TGG | + | chr3.1:58176863-58176882 | MS.gene82548:intron | 55.0% |
| ! | ATGGTTGGCTCTTGGCAGGA+GGG | + | chr3.1:58178498-58178517 | MS.gene82548:CDS | 55.0% |
| ! | CAGCTTTTGCTTCGAGGTGG+TGG | + | chr3.1:58177039-58177058 | MS.gene82548:intron | 55.0% |
| ! | CCCCGGTCTTTAGGAGGTTT+GGG | + | chr3.1:58176864-58176883 | MS.gene82548:intron | 55.0% |
| ! | CCCCTTGCCTCTTTTACGAG+TGG | + | chr3.1:58177395-58177414 | MS.gene82548:CDS | 55.0% |
| ! | GCTTCATGGATCTGGTTCGC+GGG | + | chr3.1:58178181-58178200 | MS.gene82548:intron | 55.0% |
| ! | TATGGTTGGCTCTTGGCAGG+AGG | + | chr3.1:58178497-58178516 | MS.gene82548:CDS | 55.0% |
| ! | TGTGGCCAGCTTTTGCTTCG+AGG | + | chr3.1:58177033-58177052 | MS.gene82548:intron | 55.0% |
| ! | TTCGAGGTGGTGGTTGGATG+TGG | + | chr3.1:58177049-58177068 | MS.gene82548:intron | 55.0% |
| !! | CTTTTGGAGGCAACCGTAGG+AGG | + | chr3.1:58177248-58177267 | MS.gene82548:intron | 55.0% |
| ACGGAGGTTGTGCGGAAGGT+GGG | + | chr3.1:58177110-58177129 | MS.gene82548:intron | 60.0% | |
| GGAAGACGGTGTGTCAACCC+CGG | + | chr3.1:58176847-58176866 | MS.gene82548:intron | 60.0% | |
| GGGGTGGGTGTGTTCGGATA+TGG | + | chr3.1:58177352-58177371 | MS.gene82548:CDS | 60.0% | |
| GTCGTTTGGCGAAGTGGAGG+TGG | + | chr3.1:58176916-58176935 | MS.gene82548:intron | 60.0% | |
| GTTTGGCGAAGTGGAGGTGG+AGG | + | chr3.1:58176919-58176938 | MS.gene82548:intron | 60.0% | |
| TACGGAGGTTGTGCGGAAGG+TGG | + | chr3.1:58177109-58177128 | MS.gene82548:intron | 60.0% | |
| TTGGAGGCAACCGTAGGAGG+AGG | + | chr3.1:58177251-58177270 | MS.gene82548:intron | 60.0% | |
| ! | GGCCAGCTTTTGCTTCGAGG+TGG | + | chr3.1:58177036-58177055 | MS.gene82548:intron | 60.0% |
| !! | AAGGAGTGGCGGGTGCGAAT+TGG | + | chr3.1:58177081-58177100 | MS.gene82548:intron | 60.0% |
| !! | CAACCGTAGGAGGAGGCACT+TGG | + | chr3.1:58177258-58177277 | MS.gene82548:intron | 60.0% |
| CTATGGGGAGCGGTGAAGGG+AGG | + | chr3.1:58176801-58176820 | MS.gene82548:intron | 65.0% | |
| GCTGCTATGGCGGCCGAAGC+TGG | + | chr3.1:58177895-58177914 | MS.gene82548:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.1 | gene | 58175686 | 58178670 | 58175686 | ID=MS.gene82548 |
| chr3.1 | mRNA | 58175686 | 58178670 | 58175686 | ID=MS.gene82548.t1;Parent=MS.gene82548 |
| chr3.1 | exon | 58175686 | 58175778 | 58175686 | ID=MS.gene82548.t1.exon1;Parent=MS.gene82548.t1 |
| chr3.1 | CDS | 58175686 | 58175778 | 58175686 | ID=cds.MS.gene82548.t1;Parent=MS.gene82548.t1 |
| chr3.1 | exon | 58176066 | 58176128 | 58176066 | ID=MS.gene82548.t1.exon2;Parent=MS.gene82548.t1 |
| chr3.1 | CDS | 58176066 | 58176128 | 58176066 | ID=cds.MS.gene82548.t1;Parent=MS.gene82548.t1 |
| chr3.1 | exon | 58177351 | 58177467 | 58177351 | ID=MS.gene82548.t1.exon3;Parent=MS.gene82548.t1 |
| chr3.1 | CDS | 58177351 | 58177467 | 58177351 | ID=cds.MS.gene82548.t1;Parent=MS.gene82548.t1 |
| chr3.1 | exon | 58177566 | 58177644 | 58177566 | ID=MS.gene82548.t1.exon4;Parent=MS.gene82548.t1 |
| chr3.1 | CDS | 58177566 | 58177644 | 58177566 | ID=cds.MS.gene82548.t1;Parent=MS.gene82548.t1 |
| chr3.1 | exon | 58177734 | 58178098 | 58177734 | ID=MS.gene82548.t1.exon5;Parent=MS.gene82548.t1 |
| chr3.1 | CDS | 58177734 | 58178098 | 58177734 | ID=cds.MS.gene82548.t1;Parent=MS.gene82548.t1 |
| chr3.1 | exon | 58178182 | 58178345 | 58178182 | ID=MS.gene82548.t1.exon6;Parent=MS.gene82548.t1 |
| chr3.1 | CDS | 58178182 | 58178345 | 58178182 | ID=cds.MS.gene82548.t1;Parent=MS.gene82548.t1 |
| chr3.1 | exon | 58178445 | 58178670 | 58178445 | ID=MS.gene82548.t1.exon7;Parent=MS.gene82548.t1 |
| chr3.1 | CDS | 58178445 | 58178670 | 58178445 | ID=cds.MS.gene82548.t1;Parent=MS.gene82548.t1 |
| Gene Sequence |
| Protein sequence |
