AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene70491

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene70491.t1 MTR_4g101270 69.412 85 26 0 295 379 103 187 2.27e-33 123
MS.gene70491.t1 MTR_1g012700 46.970 132 55 4 249 379 47 164 5.06e-24 97.4
MS.gene70491.t1 MTR_1g012690 51.613 93 43 2 288 379 63 154 2.34e-23 95.5
MS.gene70491.t1 MTR_1g012630 51.163 86 40 2 295 379 126 210 7.00e-22 93.2
MS.gene70491.t1 MTR_1g012710 55.556 81 34 2 300 379 72 151 1.38e-21 90.5
MS.gene70491.t1 MTR_4g115360 62.222 90 34 0 290 379 144 233 9.16e-19 85.1
MS.gene70491.t1 MTR_4g101330 48.810 84 34 4 300 378 89 168 3.83e-18 81.6
MS.gene70491.t1 MTR_3g106740 49.412 85 34 4 300 379 50 130 2.74e-16 75.1
MS.gene70491.t1 MTR_4g101260 45.882 85 44 2 296 379 49 132 8.89e-16 73.9
MS.gene70491.t1 MTR_2g026760 45.161 93 46 4 287 378 38 126 9.76e-16 73.6
MS.gene70491.t1 MTR_4g101280 47.619 84 37 4 300 379 63 143 9.83e-16 73.9
MS.gene70491.t1 MTR_4g108150 43.689 103 53 3 278 379 25 123 1.38e-15 73.2
MS.gene70491.t1 MTR_4g101310 46.914 81 42 1 300 379 54 134 5.61e-14 68.9
MS.gene70491.t1 MTR_5g012340 39.080 87 51 2 293 378 91 176 1.19e-12 66.2
MS.gene70491.t1 MTR_5g012380 37.778 90 48 3 293 378 84 169 1.80e-12 65.5
MS.gene70491.t1 MTR_3g106750 48.148 81 41 1 300 379 49 129 2.05e-11 61.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene70491.t1 AT3G22142 45.812 382 136 17 35 380 1134 1480 4.18e-58 204
MS.gene70491.t1 AT4G15160 78.161 87 17 2 295 379 97 183 1.23e-38 137
MS.gene70491.t1 AT2G10940 49.231 260 117 8 125 378 39 289 3.45e-37 136
MS.gene70491.t1 AT2G10940 49.231 260 117 8 125 378 39 289 3.45e-37 136
MS.gene70491.t1 AT1G62500 72.619 84 23 0 296 379 211 294 3.83e-36 134
MS.gene70491.t1 AT4G12490 49.462 93 46 1 288 379 90 182 7.11e-25 100
MS.gene70491.t1 AT4G12470 53.659 82 37 1 299 379 80 161 4.66e-23 94.7
MS.gene70491.t1 AT4G12500 52.439 82 38 1 299 379 96 177 2.20e-22 93.6
MS.gene70491.t1 AT4G12480 53.659 82 37 1 299 379 87 168 2.31e-22 93.2
MS.gene70491.t1 AT1G62510 50.602 83 34 3 300 378 70 149 3.59e-18 81.3
MS.gene70491.t1 AT1G12100 48.235 85 43 1 296 379 48 132 3.63e-18 80.5
MS.gene70491.t1 AT2G45180 49.412 85 41 2 296 379 51 134 2.15e-17 78.6
MS.gene70491.t1 AT4G12520 48.837 86 33 3 300 379 49 129 1.11e-16 76.3
MS.gene70491.t1 AT4G12510 48.837 86 33 3 300 379 49 129 1.11e-16 76.3
MS.gene70491.t1 AT5G46890 45.263 95 43 5 288 379 39 127 1.35e-16 75.9
MS.gene70491.t1 AT5G46900 47.126 87 37 5 296 379 47 127 4.72e-16 74.3
MS.gene70491.t1 AT4G12530 46.591 88 45 2 293 379 30 116 1.16e-15 73.2
MS.gene70491.t1 AT1G12090 45.783 83 38 3 300 378 58 137 1.48e-14 70.5
MS.gene70491.t1 AT4G22460 40.000 115 55 4 272 377 22 131 3.22e-14 69.7
MS.gene70491.t1 AT4G00165 42.718 103 50 4 278 378 33 128 1.12e-13 67.8
MS.gene70491.t1 AT4G00165 42.718 103 50 4 278 378 33 128 1.12e-13 67.8
MS.gene70491.t1 AT4G12550 36.735 98 59 3 284 379 15 111 1.71e-12 63.9

Find 153 sgRNAs with CRISPR-Local

Find 163 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGGTGGTGTGTTGGTGGTTT+AGG 0.101165 3.1:+66894223 None:intergenic
GGTGGTGTGTTGGTGGTTTA+GGG 0.179821 3.1:+66894224 None:intergenic
TTGGGATGATGAGGAGGTTT+TGG 0.213303 3.1:+66894061 None:intergenic
ACATGTGGTGGGTGCACTAC+TGG 0.227597 3.1:+66894034 None:intergenic
GTGTTGGTGGTTTAGGGCTT+GGG 0.277482 3.1:+66894230 None:intergenic
TTTGGAACATGTGGTGGTTT+TGG 0.297398 3.1:+66894079 None:intergenic
TGTGTTGGTGGTTTAGGGCT+TGG 0.305036 3.1:+66894229 None:intergenic
GGTTTAACAATTGGTGGTTT+TGG 0.308951 3.1:+66893980 None:intergenic
GGGCTTGGGTAAGGACAATA+AGG 0.310531 3.1:+66894244 None:intergenic
ACAATTGGTGGTTTCACAAT+TGG 0.325867 3.1:+66893656 None:intergenic
GGAACATAAGGTGGTGTTAC+AGG 0.335642 3.1:+66893773 None:intergenic
GGAACATAAGGTGGTGTTAC+AGG 0.335642 3.1:+66893845 None:intergenic
GGTCTCACAACAGGTGGCTT+AGG 0.336071 3.1:+66893896 None:intergenic
GGTGGACAAGGTGATGGTTT+AGG 0.339269 3.1:+66894115 None:intergenic
ACAATTGGTGGTTTCACAAT+TGG 0.349052 3.1:+66893743 None:intergenic
CATGTGGTGGGTGCACTACT+GGG 0.351022 3.1:+66894035 None:intergenic
TGCACATAAGGTGGTGTTAC+AGG 0.351554 3.1:+66893599 None:intergenic
GGCACATAAGGTGGATGTAC+TGG 0.360540 3.1:+66894001 None:intergenic
TGCATATATGATTAATAAGC+TGG 0.363723 3.1:+66893185 None:intergenic
TATGGTGGTGGTTTCACAAC+CGG 0.372564 3.1:+66893923 None:intergenic
GCTTCAAGGACTTGTTGATT+TGG 0.376763 3.1:-66893330 MS.gene70491:CDS
TCCATTGATGCTTTGAAGTT+GGG 0.377397 3.1:-66893428 MS.gene70491:CDS
GGTGTTGGTGGTGTTACAAT+AGG 0.381877 3.1:+66893569 None:intergenic
ACAGGGACAACTGGTGGTTT+AGG 0.382129 3.1:+66893791 None:intergenic
ACAGGGACAACTGGTGGTTT+AGG 0.382129 3.1:+66893863 None:intergenic
GGTTTGTGAACTGGTGGTTT+AGG 0.384230 3.1:+66894151 None:intergenic
GGTTTCACAATTGGTGGCTT+AGG 0.387848 3.1:+66893752 None:intergenic
TGAACTGGTGGCTTAACAAT+AGG 0.393111 3.1:+66894199 None:intergenic
GGTTTCACAATTGGAGGTGT+TGG 0.396026 3.1:+66893665 None:intergenic
GCTGGGCACTTAAACCCTTC+TGG 0.397405 3.1:+66893203 None:intergenic
GGTGGTGTTACAGGCACAAC+TGG 0.421124 3.1:+66893608 None:intergenic
ACTATTGGAGGTTTAACAAT+TGG 0.422358 3.1:+66893971 None:intergenic
TACTTTGGTGGTTTGTGAAC+TGG 0.426515 3.1:+66894184 None:intergenic
ACATGTTGTCCATTGCTTCA+AGG 0.426797 3.1:-66893344 MS.gene70491:CDS
ATAGGTGGTGGTTGCACATA+AGG 0.432534 3.1:+66893587 None:intergenic
CTTCAGGTTCTCATTGATTG+TGG 0.435240 3.1:-66893236 MS.gene70491:CDS
TATCTTGGTGGTTTGTGAAC+TGG 0.440214 3.1:+66894142 None:intergenic
GTTTCACAATTGGAGGTGTT+GGG 0.441037 3.1:+66893666 None:intergenic
TGAACTGGTGGTTTAGGAGT+AGG 0.443038 3.1:+66894157 None:intergenic
GGTGGTTTAGGGCTTGGGTA+AGG 0.443106 3.1:+66894235 None:intergenic
AAGAAGTTTAAGTCTAATAG+TGG 0.443363 3.1:+66893286 None:intergenic
ATGGAACATGTTTGTTGTGC+TGG 0.445283 3.1:+66893446 None:intergenic
TTCCATTGATGCTTTGAAGT+TGG 0.447409 3.1:-66893429 MS.gene70491:CDS
GGTGGTGGTGATGGTACAAC+TGG 0.447901 3.1:+66893695 None:intergenic
ATTGGAGGTGTTGGGACATA+AGG 0.448232 3.1:+66893674 None:intergenic
ACCACTGGTGGTGTCACAAT+TGG 0.450406 3.1:+66893539 None:intergenic
GCACATAAGGTGGATGTACT+GGG 0.453867 3.1:+66894002 None:intergenic
GTTTGTTGTGCTGGTGGTGT+AGG 0.454264 3.1:+66893455 None:intergenic
GGTCTCACAACAGGTGGCTT+AGG 0.454580 3.1:+66893824 None:intergenic
ATGGTGGTGGTTTCACAACC+GGG 0.469584 3.1:+66893924 None:intergenic
ATTGGAGGTGTTGGTGTTGG+TGG 0.473389 3.1:+66893557 None:intergenic
ACGTAAGGTGGATGTACTAT+TGG 0.473876 3.1:+66893956 None:intergenic
GATGGTTTAGGAGGATATCT+TGG 0.475788 3.1:+66894127 None:intergenic
ACATAGGGTGGTCTCACAAC+AGG 0.482961 3.1:+66893815 None:intergenic
ACATAGGGTGGTCTCACAAC+AGG 0.482961 3.1:+66893887 None:intergenic
GGTGGTGTTACAGGGACAAC+TGG 0.483517 3.1:+66893782 None:intergenic
GGTGGTGTTACAGGGACAAC+TGG 0.483517 3.1:+66893854 None:intergenic
GTCTCACAACAGGTGGCTTA+GGG 0.489664 3.1:+66893897 None:intergenic
ATAGGAGGGTGGTGTGTTGG+TGG 0.491865 3.1:+66894217 None:intergenic
ATTGGTGGTTTCACAATTGG+TGG 0.495782 3.1:+66893746 None:intergenic
ATTGGTGGTTTCACAATTGG+AGG 0.496030 3.1:+66893659 None:intergenic
ATTGGAGGTTTAACAATTGG+TGG 0.498001 3.1:+66893974 None:intergenic
TTAGGAGTAGGAGAATACTT+TGG 0.499134 3.1:+66894169 None:intergenic
GGTGCATGTGTTGATGTGCT+TGG 0.500450 3.1:-66893407 MS.gene70491:CDS
ACAGGTGGCTTAGGGACATA+TGG 0.500670 3.1:+66893905 None:intergenic
GCTGGTGGTGTAGGTGGATA+AGG 0.502339 3.1:+66893464 None:intergenic
GGTGTCACAATTGGAGGTGT+TGG 0.504887 3.1:+66893548 None:intergenic
GGTTTAGGAGGATATCTTGG+TGG 0.512387 3.1:+66894130 None:intergenic
GGATAAGGTACAAGTGGTGG+TGG 0.512801 3.1:+66893479 None:intergenic
CTTGGTGGACTCATACATAT+TGG 0.516064 3.1:-66893389 MS.gene70491:CDS
ACATGTGGTGGGAAAACAAT+TGG 0.519270 3.1:+66893728 None:intergenic
ATTGGTGGCTTAGGAACATA+AGG 0.519504 3.1:+66893761 None:intergenic
ACAATTGGAGGTGTTGGTGT+TGG 0.522248 3.1:+66893554 None:intergenic
TGTTGTGCTGGTGGTGTAGG+TGG 0.526757 3.1:+66893458 None:intergenic
GGAGTAGGAGAATACTTTGG+TGG 0.529075 3.1:+66894172 None:intergenic
ACAGGTGGCTTAGGAACATA+AGG 0.531513 3.1:+66893833 None:intergenic
GGACAAGGTGATGGTTTAGG+AGG 0.532067 3.1:+66894118 None:intergenic
GGTGTTTCACTAGGTGGTGT+TGG 0.533247 3.1:+66893509 None:intergenic
GGCTTAGGGACATATGGTGG+TGG 0.534071 3.1:+66893911 None:intergenic
GGAGGTGTTGGGACATAAGG+TGG 0.534384 3.1:+66893677 None:intergenic
GGAGGACATGGTGTTTCACT+AGG 0.536488 3.1:+66893500 None:intergenic
ACAATAGGAGGGTGGTGTGT+TGG 0.537158 3.1:+66894214 None:intergenic
GCATGTGTTGATGTGCTTGG+TGG 0.537915 3.1:-66893404 MS.gene70491:CDS
GGGACATAAGGTGGTGGTGA+TGG 0.541423 3.1:+66893686 None:intergenic
CTCATACATATTGGTATCGG+TGG 0.543738 3.1:-66893380 MS.gene70491:CDS
AACTGGTGGTTTAGGTACAT+AGG 0.546797 3.1:+66893799 None:intergenic
AACTGGTGGTTTAGGTACAT+AGG 0.546797 3.1:+66893871 None:intergenic
ATGTGGTGGGTGCACTACTG+GGG 0.548341 3.1:+66894036 None:intergenic
GCAAGCAAGAACATTGAGTA+AGG 0.548467 3.1:+66894267 None:intergenic
GGTGGTGTTACAATAGGTGG+TGG 0.552132 3.1:+66893575 None:intergenic
TAAGGTGGATGTACTATTGG+AGG 0.552788 3.1:+66893959 None:intergenic
ACAGGCACAACTGGAGGTAG+AGG 0.553941 3.1:+66893617 None:intergenic
ACAAGTGGTGGTGGAGGACA+TGG 0.555606 3.1:+66893488 None:intergenic
TAAGGTACAAGTGGTGGTGG+AGG 0.557029 3.1:+66893482 None:intergenic
TCAACAAGTCCTTGAAGCAA+TGG 0.557441 3.1:+66893335 None:intergenic
GGTGTTGGTGGTGTAACCAC+TGG 0.559606 3.1:+66893524 None:intergenic
CTTGGTGGTTTGTGAACTGG+TGG 0.569251 3.1:+66894145 None:intergenic
ACCTTACGTACCAAAACCCC+CGG 0.570737 3.1:-66893942 MS.gene70491:CDS
CAATGAGAACCTGAAGAGCA+AGG 0.571048 3.1:+66893243 None:intergenic
GAACATGTTTGTTGTGCTGG+TGG 0.572842 3.1:+66893449 None:intergenic
GAACATAAGGTGGTGTTACA+GGG 0.574230 3.1:+66893774 None:intergenic
GAACATAAGGTGGTGTTACA+GGG 0.574230 3.1:+66893846 None:intergenic
TGGTGGTGGTTTCACAACCG+GGG 0.576934 3.1:+66893925 None:intergenic
GCATATATGATTAATAAGCT+GGG 0.577240 3.1:+66893186 None:intergenic
GATGGTACAACTGGAGGTAG+TGG 0.577264 3.1:+66893704 None:intergenic
TGTGGTGGGTGCACTACTGG+GGG 0.578476 3.1:+66894037 None:intergenic
GTTGGTGGTGTTACAATAGG+TGG 0.578628 3.1:+66893572 None:intergenic
ACTGGTGGCTTAACAATAGG+AGG 0.579565 3.1:+66894202 None:intergenic
ACCCAACTTCAAAGCATCAA+TGG 0.579869 3.1:+66893427 None:intergenic
AGGTACTCAAGTTCAAGAGA+AGG 0.579976 3.1:+66894287 None:intergenic
GTTTCACTAGGTGGTGTTGG+TGG 0.580655 3.1:+66893512 None:intergenic
TTTGGTGGTTTGTGAACTGG+TGG 0.584308 3.1:+66894187 None:intergenic
CAAGAGAAGGATGAAAACAT+TGG 0.585017 3.1:+66894300 None:intergenic
AATGAGAACCTGAAGAGCAA+GGG 0.587112 3.1:+66893244 None:intergenic
GGAGGTAGTGGAACATGTGG+TGG 0.588460 3.1:+66893716 None:intergenic
GGACTCATACATATTGGTAT+CGG 0.594117 3.1:-66893383 MS.gene70491:CDS
TGTGGCAAAACTCCACCAGA+AGG 0.594689 3.1:-66893218 MS.gene70491:CDS
CACATAAGGTGGATGTACTG+GGG 0.597608 3.1:+66894003 None:intergenic
ACTGGTGGTTTAGGTACATA+GGG 0.604382 3.1:+66893800 None:intergenic
ACTGGTGGTTTAGGTACATA+GGG 0.604382 3.1:+66893872 None:intergenic
GGTGTTGGGACATAAGGTGG+TGG 0.611851 3.1:+66893680 None:intergenic
ACTGGTGGTGTCACAATTGG+AGG 0.619027 3.1:+66893542 None:intergenic
GGAGGTAGAGGAACATGTGG+TGG 0.622203 3.1:+66893629 None:intergenic
ATGAGAACCTGAAGAGCAAG+GGG 0.626266 3.1:+66893245 None:intergenic
TGTGGTGGGAAAACAATTGG+TGG 0.626847 3.1:+66893731 None:intergenic
GGCTTGGGTAAGGACAATAA+GGG 0.629172 3.1:+66894245 None:intergenic
GAGGTAGTGGAACATGTGGT+GGG 0.631936 3.1:+66893717 None:intergenic
GTGGCAAAACTCCACCAGAA+GGG 0.633657 3.1:-66893217 MS.gene70491:CDS
GTAGGTGGATAAGGTACAAG+TGG 0.636320 3.1:+66893473 None:intergenic
TCCAATTGTGACACCACCAG+TGG 0.639965 3.1:-66893540 MS.gene70491:CDS
GGGCACTTAAACCCTTCTGG+TGG 0.641808 3.1:+66893206 None:intergenic
GGTGTTACAGGGACAACTGG+TGG 0.641906 3.1:+66893785 None:intergenic
GGTGTTACAGGGACAACTGG+TGG 0.641906 3.1:+66893857 None:intergenic
GGTGGATAAGGTACAAGTGG+TGG 0.651301 3.1:+66893476 None:intergenic
CTGGTGGCTTAACAATAGGA+GGG 0.675325 3.1:+66894203 None:intergenic
GGTGGTGGTTGCACATAAGG+TGG 0.679674 3.1:+66893590 None:intergenic
GGACATGGTGTTTCACTAGG+TGG 0.681972 3.1:+66893503 None:intergenic
TAGGGTGGTCTCACAACAGG+TGG 0.682111 3.1:+66893818 None:intergenic
TAGGGTGGTCTCACAACAGG+TGG 0.682111 3.1:+66893890 None:intergenic
GGTGTTACAGGCACAACTGG+AGG 0.684392 3.1:+66893611 None:intergenic
GGTGGTGGTTTCACAACCGG+GGG 0.687563 3.1:+66893926 None:intergenic
ACATAAGGTGGATGTACTGG+GGG 0.689428 3.1:+66894004 None:intergenic
GGTGGCTTAGGGACATATGG+TGG 0.693700 3.1:+66893908 None:intergenic
GGTGGCTTAGGAACATAAGG+TGG 0.699096 3.1:+66893764 None:intergenic
ACTGGAGGTAGAGGAACATG+TGG 0.699937 3.1:+66893626 None:intergenic
GGTGGTGATGGTACAACTGG+AGG 0.703720 3.1:+66893698 None:intergenic
GTTGGTGGTGTAACCACTGG+TGG 0.706491 3.1:+66893527 None:intergenic
GGTGGCTTAGGAACATAAGG+TGG 0.709677 3.1:+66893836 None:intergenic
GTGGCTTAACAATAGGAGGG+TGG 0.714929 3.1:+66894206 None:intergenic
GGTGGTTTAGGTACATAGGG+TGG 0.730445 3.1:+66893803 None:intergenic
GGTGGTTTAGGTACATAGGG+TGG 0.730445 3.1:+66893875 None:intergenic
ACTGGAGGTAGTGGAACATG+TGG 0.746997 3.1:+66893713 None:intergenic
TGAGAACCTGAAGAGCAAGG+GGG 0.789043 3.1:+66893246 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
! AAGAAGTTTAAGTCTAATAG+TGG + chr3.1:66894232-66894251 None:intergenic 25.0%
ACTATTGGAGGTTTAACAAT+TGG + chr3.1:66893547-66893566 None:intergenic 30.0%
ATTGGAGGTTTAACAATTGG+TGG + chr3.1:66893544-66893563 None:intergenic 35.0%
CAAGAGAAGGATGAAAACAT+TGG + chr3.1:66893218-66893237 None:intergenic 35.0%
GGACTCATACATATTGGTAT+CGG - chr3.1:66894132-66894151 MS.gene70491:CDS 35.0%
TTAGGAGTAGGAGAATACTT+TGG + chr3.1:66893349-66893368 None:intergenic 35.0%
! ACAATTGGTGGTTTCACAAT+TGG + chr3.1:66893775-66893794 None:intergenic 35.0%
! ACATGTGGTGGAAAAACAAT+TGG + chr3.1:66893877-66893896 None:intergenic 35.0%
!! GGTTTAACAATTGGTGGTTT+TGG + chr3.1:66893538-66893557 None:intergenic 35.0%
!! TCCATTGATGCTTTGAAGTT+GGG - chr3.1:66894087-66894106 MS.gene70491:CDS 35.0%
!! TTCCATTGATGCTTTGAAGT+TGG - chr3.1:66894086-66894105 MS.gene70491:CDS 35.0%
AACTGGTGGTTTAGGTACAT+AGG + chr3.1:66893647-66893666 None:intergenic 40.0%
AATGAGAACCTGAAGAGCAA+GGG + chr3.1:66894274-66894293 None:intergenic 40.0%
ACATGTTGTCCATTGCTTCA+AGG - chr3.1:66894171-66894190 MS.gene70491:CDS 40.0%
ACGTAAGGTGGATGTACTAT+TGG + chr3.1:66893562-66893581 None:intergenic 40.0%
ACTGGTGGTTTAGGTACATA+GGG + chr3.1:66893646-66893665 None:intergenic 40.0%
AGGTACTCAAGTTCAAGAGA+AGG + chr3.1:66893231-66893250 None:intergenic 40.0%
GATGGTTTAGGAGGATATCT+TGG + chr3.1:66893391-66893410 None:intergenic 40.0%
GCAAGCAAGAACATTGAGTA+AGG + chr3.1:66893251-66893270 None:intergenic 40.0%
TAAGGTGGATGTACTATTGG+AGG + chr3.1:66893559-66893578 None:intergenic 40.0%
TCAACAAGTCCTTGAAGCAA+TGG + chr3.1:66894183-66894202 None:intergenic 40.0%
TGAACTGGTGGCTTAACAAT+AGG + chr3.1:66893319-66893338 None:intergenic 40.0%
! ACATGTGGTGGGAAAACAAT+TGG + chr3.1:66893790-66893809 None:intergenic 40.0%
! ACCCAACTTCAAAGCATCAA+TGG + chr3.1:66894091-66894110 None:intergenic 40.0%
! ATTGGTGGCTTAGGAACATA+AGG + chr3.1:66893757-66893776 None:intergenic 40.0%
! ATTGGTGGTTTCACAATTGG+AGG + chr3.1:66893772-66893791 None:intergenic 40.0%
! ATTGGTGGTTTCACAATTGG+TGG + chr3.1:66893772-66893791 None:intergenic 40.0%
! CTCATACATATTGGTATCGG+TGG - chr3.1:66894135-66894154 MS.gene70491:CDS 40.0%
! CTTCAGGTTCTCATTGATTG+TGG - chr3.1:66894279-66894298 MS.gene70491:CDS 40.0%
! TACTTTGGTGGTTTGTGAAC+TGG + chr3.1:66893334-66893353 None:intergenic 40.0%
! TATCTTGGTGGTTTGTGAAC+TGG + chr3.1:66893376-66893395 None:intergenic 40.0%
! TGTGGTGGAAAAACAATTGG+TGG + chr3.1:66893874-66893893 None:intergenic 40.0%
!! ATGGAACATGTTTGTTGTGC+TGG + chr3.1:66894072-66894091 None:intergenic 40.0%
!! CTTGGTGGACTCATACATAT+TGG - chr3.1:66894126-66894145 MS.gene70491:CDS 40.0%
!! GAACATAAGGTGGTGTTACA+GGG + chr3.1:66893672-66893691 None:intergenic 40.0%
!! GCTTCAAGGACTTGTTGATT+TGG - chr3.1:66894185-66894204 MS.gene70491:CDS 40.0%
!! GTTTCACAATTGGAGGTGTT+GGG + chr3.1:66893852-66893871 None:intergenic 40.0%
!! TTTGGAACATGTGGTGGTTT+TGG + chr3.1:66893439-66893458 None:intergenic 40.0%
!!! ATTGGTGGTTTTGGCACATA+AGG + chr3.1:66893529-66893548 None:intergenic 40.0%
!!! GTGGTTTTGGTGTTGATGAT+GGG + chr3.1:66893426-66893445 None:intergenic 40.0%
!!! TGGTTTTGGTGTTGATGATG+GGG + chr3.1:66893425-66893444 None:intergenic 40.0%
ACAGGTGGCTTAGGAACATA+AGG + chr3.1:66893685-66893704 None:intergenic 45.0%
ACATAAGGTGGATGTACTGG+GGG + chr3.1:66893514-66893533 None:intergenic 45.0%
ACTGGTGGCTTAACAATAGG+AGG + chr3.1:66893316-66893335 None:intergenic 45.0%
ATGAGAACCTGAAGAGCAAG+GGG + chr3.1:66894273-66894292 None:intergenic 45.0%
CAATGAGAACCTGAAGAGCA+AGG + chr3.1:66894275-66894294 None:intergenic 45.0%
CACATAAGGTGGATGTACTG+GGG + chr3.1:66893515-66893534 None:intergenic 45.0%
CTGGTGGCTTAACAATAGGA+GGG + chr3.1:66893315-66893334 None:intergenic 45.0%
GCACATAAGGTGGATGTACT+GGG + chr3.1:66893516-66893535 None:intergenic 45.0%
GGAGTAGGAGAATACTTTGG+TGG + chr3.1:66893346-66893365 None:intergenic 45.0%
GGCTTGGGTAAGGACAATAA+GGG + chr3.1:66893273-66893292 None:intergenic 45.0%
GGTTTAGGAGGATATCTTGG+TGG + chr3.1:66893388-66893407 None:intergenic 45.0%
GGTTTGTGAACTGGTGGTTT+AGG + chr3.1:66893367-66893386 None:intergenic 45.0%
GTAGGTGGATAAGGTACAAG+TGG + chr3.1:66894045-66894064 None:intergenic 45.0%
TGAACTGGTGGTTTAGGAGT+AGG + chr3.1:66893361-66893380 None:intergenic 45.0%
! ATAGGTGGTGGTTGCACATA+AGG + chr3.1:66893931-66893950 None:intergenic 45.0%
! GGTTTCACAATTGGAGGTGT+TGG + chr3.1:66893853-66893872 None:intergenic 45.0%
! GGTTTCACAATTGGTGGCTT+AGG + chr3.1:66893766-66893785 None:intergenic 45.0%
! TGTGGTGGGAAAACAATTGG+TGG + chr3.1:66893787-66893806 None:intergenic 45.0%
! TTGGGATGATGAGGAGGTTT+TGG + chr3.1:66893457-66893476 None:intergenic 45.0%
! TTTGGTGGTTTGTGAACTGG+TGG + chr3.1:66893331-66893350 None:intergenic 45.0%
!! ACAATTGGAGGTGTTGGTGT+TGG + chr3.1:66893964-66893983 None:intergenic 45.0%
!! ATTGGAGGTGTTGGGACATA+AGG + chr3.1:66893844-66893863 None:intergenic 45.0%
!! GAACATGTTTGTTGTGCTGG+TGG + chr3.1:66894069-66894088 None:intergenic 45.0%
!! GGAACATAAGGTGGTGTTAC+AGG + chr3.1:66893673-66893692 None:intergenic 45.0%
!! GGTGTTGGTGGTGTTACAAT+AGG + chr3.1:66893949-66893968 None:intergenic 45.0%
!! GTTGGTGGTGTTACAATAGG+TGG + chr3.1:66893946-66893965 None:intergenic 45.0%
!! TATGGTGGTGGTTTCACAAC+CGG + chr3.1:66893595-66893614 None:intergenic 45.0%
!! TGCACATAAGGTGGTGTTAC+AGG + chr3.1:66893919-66893938 None:intergenic 45.0%
!!! GGTGGTTTTGGTGTTGATGA+TGG + chr3.1:66893427-66893446 None:intergenic 45.0%
!!! GGTTTTGGTGTTGATGATGG+GGG + chr3.1:66893424-66893443 None:intergenic 45.0%
!!! TGAGGAGGTTTTGGAACATG+TGG + chr3.1:66893448-66893467 None:intergenic 45.0%
ACAATAGGAGGGTGGTGTGT+TGG + chr3.1:66893304-66893323 None:intergenic 50.0%
ACAGGGACAACTGGTGGTTT+AGG + chr3.1:66893655-66893674 None:intergenic 50.0%
ACAGGTGGCTTAGGGACATA+TGG + chr3.1:66893613-66893632 None:intergenic 50.0%
ACATAGGGTGGTCTCACAAC+AGG + chr3.1:66893631-66893650 None:intergenic 50.0%
ACCTTACGTACCAAAACCCC+CGG - chr3.1:66893573-66893592 MS.gene70491:CDS 50.0%
ACTGGAGGTAGAGGAACATG+TGG + chr3.1:66893892-66893911 None:intergenic 50.0%
GATGGTACAACTGGAGGTAG+TGG + chr3.1:66893814-66893833 None:intergenic 50.0%
GGACATGGTGTTTCACTAGG+TGG + chr3.1:66894015-66894034 None:intergenic 50.0%
GGAGGACATGGTGTTTCACT+AGG + chr3.1:66894018-66894037 None:intergenic 50.0%
GGATAAGGTACAAGTGGTGG+TGG + chr3.1:66894039-66894058 None:intergenic 50.0%
GGCACATAAGGTGGATGTAC+TGG + chr3.1:66893517-66893536 None:intergenic 50.0%
GGGCTTGGGTAAGGACAATA+AGG + chr3.1:66893274-66893293 None:intergenic 50.0%
GGTGGATAAGGTACAAGTGG+TGG + chr3.1:66894042-66894061 None:intergenic 50.0%
GGTGGCTTAGGAACATAAGG+TGG + chr3.1:66893682-66893701 None:intergenic 50.0%
GGTGGTTTAGGTACATAGGG+TGG + chr3.1:66893643-66893662 None:intergenic 50.0%
GGTGTTTCACTAGGTGGTGT+TGG + chr3.1:66894009-66894028 None:intergenic 50.0%
GTCTCACAACAGGTGGCTTA+GGG + chr3.1:66893621-66893640 None:intergenic 50.0%
GTGGCAAAACTCCACCAGAA+GGG - chr3.1:66894298-66894317 MS.gene70491:CDS 50.0%
GTGGCTTAACAATAGGAGGG+TGG + chr3.1:66893312-66893331 None:intergenic 50.0%
TCCAATTGTGACACCACCAG+TGG - chr3.1:66893975-66893994 MS.gene70491:CDS 50.0%
TGAGAACCTGAAGAGCAAGG+GGG + chr3.1:66894272-66894291 None:intergenic 50.0%
TGTGGCAAAACTCCACCAGA+AGG - chr3.1:66894297-66894316 MS.gene70491:CDS 50.0%
TGTTATCCCCCTTGCTCTTC+AGG - chr3.1:66894263-66894282 MS.gene70491:CDS 50.0%
! CTTGGTGGTTTGTGAACTGG+TGG + chr3.1:66893373-66893392 None:intergenic 50.0%
! GCATGTGTTGATGTGCTTGG+TGG - chr3.1:66894111-66894130 MS.gene70491:CDS 50.0%
! GGACAAGGTGATGGTTTAGG+AGG + chr3.1:66893400-66893419 None:intergenic 50.0%
! GGTGCATGTGTTGATGTGCT+TGG - chr3.1:66894108-66894127 MS.gene70491:CDS 50.0%
! GGTGGACAAGGTGATGGTTT+AGG + chr3.1:66893403-66893422 None:intergenic 50.0%
! GGTGTCACAATTGGAGGTGT+TGG + chr3.1:66893970-66893989 None:intergenic 50.0%
! GTTTCACTAGGTGGTGTTGG+TGG + chr3.1:66894006-66894025 None:intergenic 50.0%
!! ACCACTGGTGGTGTCACAAT+TGG + chr3.1:66893979-66893998 None:intergenic 50.0%
!! ACTGGAGGTAGTGGAACATG+TGG + chr3.1:66893805-66893824 None:intergenic 50.0%
!! ACTGGTGGTGTCACAATTGG+AGG + chr3.1:66893976-66893995 None:intergenic 50.0%
!! ATGGTGGTGGTTTCACAACC+GGG + chr3.1:66893594-66893613 None:intergenic 50.0%
!! ATTGGAGGTGTTGGTGTTGG+TGG + chr3.1:66893961-66893980 None:intergenic 50.0%
!! GAGGTAGTGGAACATGTGGT+GGG + chr3.1:66893801-66893820 None:intergenic 50.0%
!! GGTGGTGTGTTGGTGGTTTA+GGG + chr3.1:66893294-66893313 None:intergenic 50.0%
!! GGTGGTGTTACAATAGGTGG+TGG + chr3.1:66893943-66893962 None:intergenic 50.0%
!! GTGTTGGTGGTTTAGGGCTT+GGG + chr3.1:66893288-66893307 None:intergenic 50.0%
!! GTTTGTTGTGCTGGTGGTGT+AGG + chr3.1:66894063-66894082 None:intergenic 50.0%
!! TAAGGTACAAGTGGTGGTGG+AGG + chr3.1:66894036-66894055 None:intergenic 50.0%
!! TGTGTTGGTGGTTTAGGGCT+TGG + chr3.1:66893289-66893308 None:intergenic 50.0%
!! TTTGGTGTTGATGATGGGGG+TGG + chr3.1:66893421-66893440 None:intergenic 50.0%
!!! ACTGGGGGTTTTGGAACATG+TGG + chr3.1:66893499-66893518 None:intergenic 50.0%
!!! GGAGGTTTTGGAACATGTGG+TGG + chr3.1:66893445-66893464 None:intergenic 50.0%
!!! GGGGTTTTGGAACATGTGGT+GGG + chr3.1:66893495-66893514 None:intergenic 50.0%
!!! GGTGGTTTTGGCACATAAGG+TGG + chr3.1:66893526-66893545 None:intergenic 50.0%
ACAGGCACAACTGGAGGTAG+AGG + chr3.1:66893901-66893920 None:intergenic 55.0%
ATAGGAGGGTGGTGTGTTGG+TGG + chr3.1:66893301-66893320 None:intergenic 55.0%
GCTGGGCACTTAAACCCTTC+TGG + chr3.1:66894315-66894334 None:intergenic 55.0%
GGAGGTAGAGGAACATGTGG+TGG + chr3.1:66893889-66893908 None:intergenic 55.0%
GGCTTAGGGACATATGGTGG+TGG + chr3.1:66893607-66893626 None:intergenic 55.0%
GGGCACTTAAACCCTTCTGG+TGG + chr3.1:66894312-66894331 None:intergenic 55.0%
GGTCTCACAACAGGTGGCTT+AGG + chr3.1:66893622-66893641 None:intergenic 55.0%
GGTGGCTTAGGGACATATGG+TGG + chr3.1:66893610-66893629 None:intergenic 55.0%
TAGGGTGGTCTCACAACAGG+TGG + chr3.1:66893628-66893647 None:intergenic 55.0%
! ACTGGGGGTTTGGGATGATG+AGG + chr3.1:66893466-66893485 None:intergenic 55.0%
! GCTGGTGGTGTAGGTGGATA+AGG + chr3.1:66894054-66894073 None:intergenic 55.0%
! GGGACATAAGGTGGTGGTGA+TGG + chr3.1:66893832-66893851 None:intergenic 55.0%
! GGTGGATGTACTGGGGGTTT+TGG + chr3.1:66893508-66893527 None:intergenic 55.0%
! GGTGGTGGTTGCACATAAGG+TGG + chr3.1:66893928-66893947 None:intergenic 55.0%
! GGTGGTTTAGGGCTTGGGTA+AGG + chr3.1:66893283-66893302 None:intergenic 55.0%
! GGTGTTACAGGCACAACTGG+AGG + chr3.1:66893907-66893926 None:intergenic 55.0%
! GGTGTTACAGGGACAACTGG+TGG + chr3.1:66893661-66893680 None:intergenic 55.0%
! GGTGTTGGGACATAAGGTGG+TGG + chr3.1:66893838-66893857 None:intergenic 55.0%
! GGTTTCACAACCGGGGGTTT+TGG + chr3.1:66893586-66893605 None:intergenic 55.0%
! TGTTGTGCTGGTGGTGTAGG+TGG + chr3.1:66894060-66894079 None:intergenic 55.0%
!! ACAAGTGGTGGTGGAGGACA+TGG + chr3.1:66894030-66894049 None:intergenic 55.0%
!! ACATGTGGTGGGTGCACTAC+TGG + chr3.1:66893484-66893503 None:intergenic 55.0%
!! ACCGGGGGTTTTGGTACGTA+AGG + chr3.1:66893577-66893596 None:intergenic 55.0%
!! ATGTGGTGGGTGCACTACTG+GGG + chr3.1:66893482-66893501 None:intergenic 55.0%
!! CATGTGGTGGGTGCACTACT+GGG + chr3.1:66893483-66893502 None:intergenic 55.0%
!! GGAGGTAGTGGAACATGTGG+TGG + chr3.1:66893802-66893821 None:intergenic 55.0%
!! GGAGGTGTTGGGACATAAGG+TGG + chr3.1:66893841-66893860 None:intergenic 55.0%
!! GGGGGTTTTGGTACGTAAGG+TGG + chr3.1:66893574-66893593 None:intergenic 55.0%
!! GGGTGGTGTGTTGGTGGTTT+AGG + chr3.1:66893295-66893314 None:intergenic 55.0%
!! GGTGGTGATGGTACAACTGG+AGG + chr3.1:66893820-66893839 None:intergenic 55.0%
!! GGTGGTGGTGATGGTACAAC+TGG + chr3.1:66893823-66893842 None:intergenic 55.0%
!! GGTGGTGTTACAGGCACAAC+TGG + chr3.1:66893910-66893929 None:intergenic 55.0%
!! GGTGGTGTTACAGGGACAAC+TGG + chr3.1:66893664-66893683 None:intergenic 55.0%
!! GGTGTTGGTGGTGTAACCAC+TGG + chr3.1:66893994-66894013 None:intergenic 55.0%
!! GTTGATGATGGGGGTGGACA+AGG + chr3.1:66893415-66893434 None:intergenic 55.0%
!! GTTGGTGGTGTAACCACTGG+TGG + chr3.1:66893991-66894010 None:intergenic 55.0%
!! TGGTGGTGGTTTCACAACCG+GGG + chr3.1:66893593-66893612 None:intergenic 55.0%
!!! GGGGGTTTTGGAACATGTGG+TGG + chr3.1:66893496-66893515 None:intergenic 55.0%
GATGGGGGTGGACAAGGTGA+TGG + chr3.1:66893409-66893428 None:intergenic 60.0%
GGGTGCACTACTGGGGGTTT+GGG + chr3.1:66893475-66893494 None:intergenic 60.0%
TGGGTGCACTACTGGGGGTT+TGG + chr3.1:66893476-66893495 None:intergenic 60.0%
! GGGGGTTTGGGATGATGAGG+AGG + chr3.1:66893463-66893482 None:intergenic 60.0%
! GGTGGTGGTTTCACAACCGG+GGG + chr3.1:66893592-66893611 None:intergenic 60.0%
!! TGTGGTGGGTGCACTACTGG+GGG + chr3.1:66893481-66893500 None:intergenic 60.0%


Chromosome Type Strat End Strand Name
chr3.1 gene 66893196 66894341 66893196 ID=MS.gene70491
chr3.1 mRNA 66893196 66894341 66893196 ID=MS.gene70491.t1;Parent=MS.gene70491
chr3.1 exon 66893196 66894341 66893196 ID=MS.gene70491.t1.exon1;Parent=MS.gene70491.t1
chr3.1 CDS 66893196 66894341 66893196 ID=cds.MS.gene70491.t1;Parent=MS.gene70491.t1
Gene Sequence

>MS.gene70491

ATGGCTAACTATGCTCTAGCCAATGTTTTCATCCTTCTCTTGAACTTGAGTACCTTACTCAATGTTCTTGCTTGCCCTTATTGTCCTTACCCAAGCCCTAAACCACCAACACACCACCCTCCTATTGTTAAGCCACCAGTTCACAAACCACCAAAGTATTCTCCTACTCCTAAACCACCAGTTCACAAACCACCAAGATATCCTCCTAAACCATCACCTTGTCCACCCCCATCATCAACACCAAAACCACCACATGTTCCAAAACCTCCTCATCATCCCAAACCCCCAGTAGTGCACCCACCACATGTTCCAAAACCCCCAGTACATCCACCTTATGTGCCAAAACCACCAATTGTTAAACCTCCAATAGTACATCCACCTTACGTACCAAAACCCCCGGTTGTGAAACCACCACCATATGTCCCTAAGCCACCTGTTGTGAGACCACCCTATGTACCTAAACCACCAGTTGTCCCTGTAACACCACCTTATGTTCCTAAGCCACCTGTTGTGAGACCACCCTATGTACCTAAACCACCAGTTGTCCCTGTAACACCACCTTATGTTCCTAAGCCACCAATTGTGAAACCACCAATTGTTTTCCCACCACATGTTCCACTACCTCCAGTTGTACCATCACCACCACCTTATGTCCCAACACCTCCAATTGTGAAACCACCAATTGTTTTTCCACCACATGTTCCTCTACCTCCAGTTGTGCCTGTAACACCACCTTATGTGCAACCACCACCTATTGTAACACCACCAACACCAACACCTCCAATTGTGACACCACCAGTGGTTACACCACCAACACCACCTAGTGAAACACCATGTCCTCCACCACCACTTGTACCTTATCCACCTACACCACCAGCACAACAAACATGTTCCATTGATGCTTTGAAGTTGGGTGCATGTGTTGATGTGCTTGGTGGACTCATACATATTGGTATCGGTGGAAGTGCTAAACAAACATGTTGTCCATTGCTTCAAGGACTTGTTGATTTGGATGCAGCTATATGTCTCTGCACCACTATTAGACTTAAACTTCTTAATATCAATCTTGTTATCCCCCTTGCTCTTCAGGTTCTCATTGATTGTGGCAAAACTCCACCAGAAGGGTTTAAGTGCCCAGCTTATTAA
Protein sequence

>MS.gene70491.t1

MANYALANVFILLLNLSTLLNVLACPYCPYPSPKPPTHHPPIVKPPVHKPPKYSPTPKPPVHKPPRYPPKPSPCPPPSSTPKPPHVPKPPHHPKPPVVHPPHVPKPPVHPPYVPKPPIVKPPIVHPPYVPKPPVVKPPPYVPKPPVVRPPYVPKPPVVPVTPPYVPKPPVVRPPYVPKPPVVPVTPPYVPKPPIVKPPIVFPPHVPLPPVVPSPPPYVPTPPIVKPPIVFPPHVPLPPVVPVTPPYVQPPPIVTPPTPTPPIVTPPVVTPPTPPSETPCPPPPLVPYPPTPPAQQTCSIDALKLGACVDVLGGLIHIGIGGSAKQTCCPLLQGLVDLDAAICLCTTIRLKLLNINLVIPLALQVLIDCGKTPPEGFKCPAY