AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene73893

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene73893.t1 MTR_4g101270 69.412 85 26 0 295 379 103 187 2.27e-33 123
MS.gene73893.t1 MTR_1g012700 46.970 132 55 4 249 379 47 164 5.06e-24 97.4
MS.gene73893.t1 MTR_1g012690 51.613 93 43 2 288 379 63 154 2.34e-23 95.5
MS.gene73893.t1 MTR_1g012630 51.163 86 40 2 295 379 126 210 7.00e-22 93.2
MS.gene73893.t1 MTR_1g012710 55.556 81 34 2 300 379 72 151 1.38e-21 90.5
MS.gene73893.t1 MTR_4g115360 62.222 90 34 0 290 379 144 233 9.16e-19 85.1
MS.gene73893.t1 MTR_4g101330 48.810 84 34 4 300 378 89 168 3.83e-18 81.6
MS.gene73893.t1 MTR_3g106740 49.412 85 34 4 300 379 50 130 2.74e-16 75.1
MS.gene73893.t1 MTR_4g101260 45.882 85 44 2 296 379 49 132 8.89e-16 73.9
MS.gene73893.t1 MTR_2g026760 45.161 93 46 4 287 378 38 126 9.76e-16 73.6
MS.gene73893.t1 MTR_4g101280 47.619 84 37 4 300 379 63 143 9.83e-16 73.9
MS.gene73893.t1 MTR_4g108150 43.689 103 53 3 278 379 25 123 1.38e-15 73.2
MS.gene73893.t1 MTR_4g101310 46.914 81 42 1 300 379 54 134 5.61e-14 68.9
MS.gene73893.t1 MTR_5g012340 39.080 87 51 2 293 378 91 176 1.19e-12 66.2
MS.gene73893.t1 MTR_5g012380 37.778 90 48 3 293 378 84 169 1.80e-12 65.5
MS.gene73893.t1 MTR_3g106750 48.148 81 41 1 300 379 49 129 2.05e-11 61.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene73893.t1 AT3G22142 45.812 382 136 17 35 380 1134 1480 4.18e-58 204
MS.gene73893.t1 AT4G15160 78.161 87 17 2 295 379 97 183 1.23e-38 137
MS.gene73893.t1 AT2G10940 49.231 260 117 8 125 378 39 289 3.45e-37 136
MS.gene73893.t1 AT2G10940 49.231 260 117 8 125 378 39 289 3.45e-37 136
MS.gene73893.t1 AT1G62500 72.619 84 23 0 296 379 211 294 3.83e-36 134
MS.gene73893.t1 AT4G12490 49.462 93 46 1 288 379 90 182 7.11e-25 100
MS.gene73893.t1 AT4G12470 53.659 82 37 1 299 379 80 161 4.66e-23 94.7
MS.gene73893.t1 AT4G12500 52.439 82 38 1 299 379 96 177 2.20e-22 93.6
MS.gene73893.t1 AT4G12480 53.659 82 37 1 299 379 87 168 2.31e-22 93.2
MS.gene73893.t1 AT1G62510 50.602 83 34 3 300 378 70 149 3.59e-18 81.3
MS.gene73893.t1 AT1G12100 48.235 85 43 1 296 379 48 132 3.63e-18 80.5
MS.gene73893.t1 AT2G45180 49.412 85 41 2 296 379 51 134 2.15e-17 78.6
MS.gene73893.t1 AT4G12520 48.837 86 33 3 300 379 49 129 1.11e-16 76.3
MS.gene73893.t1 AT4G12510 48.837 86 33 3 300 379 49 129 1.11e-16 76.3
MS.gene73893.t1 AT5G46890 45.263 95 43 5 288 379 39 127 1.35e-16 75.9
MS.gene73893.t1 AT5G46900 47.126 87 37 5 296 379 47 127 4.72e-16 74.3
MS.gene73893.t1 AT4G12530 46.591 88 45 2 293 379 30 116 1.16e-15 73.2
MS.gene73893.t1 AT1G12090 45.783 83 38 3 300 378 58 137 1.48e-14 70.5
MS.gene73893.t1 AT4G22460 40.000 115 55 4 272 377 22 131 3.22e-14 69.7
MS.gene73893.t1 AT4G00165 42.718 103 50 4 278 378 33 128 1.12e-13 67.8
MS.gene73893.t1 AT4G00165 42.718 103 50 4 278 378 33 128 1.12e-13 67.8
MS.gene73893.t1 AT4G12550 36.735 98 59 3 284 379 15 111 1.71e-12 63.9

Find 153 sgRNAs with CRISPR-Local

Find 163 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGGTGGTGTGTTGGTGGTTT+AGG 0.101165 3.2:-71519622 None:intergenic
GGTGGTGTGTTGGTGGTTTA+GGG 0.179821 3.2:-71519621 None:intergenic
TTGGGATGATGAGGAGGTTT+TGG 0.213303 3.2:-71519784 None:intergenic
ACATGTGGTGGGTGCACTAC+TGG 0.227597 3.2:-71519811 None:intergenic
GTGTTGGTGGTTTAGGGCTT+GGG 0.277482 3.2:-71519615 None:intergenic
TTTGGAACATGTGGTGGTTT+TGG 0.297398 3.2:-71519766 None:intergenic
TGTGTTGGTGGTTTAGGGCT+TGG 0.305036 3.2:-71519616 None:intergenic
GGTTTAACAATTGGTGGTTT+TGG 0.308951 3.2:-71519865 None:intergenic
GGGCTTGGGTAAGGACAATA+AGG 0.310531 3.2:-71519601 None:intergenic
ACAATTGGTGGTTTCACAAT+TGG 0.325867 3.2:-71520189 None:intergenic
GGAACATAAGGTGGTGTTAC+AGG 0.335642 3.2:-71520000 None:intergenic
GGAACATAAGGTGGTGTTAC+AGG 0.335642 3.2:-71520072 None:intergenic
GGTCTCACAACAGGTGGCTT+AGG 0.336071 3.2:-71519949 None:intergenic
GGTGGACAAGGTGATGGTTT+AGG 0.339269 3.2:-71519730 None:intergenic
ACAATTGGTGGTTTCACAAT+TGG 0.349052 3.2:-71520102 None:intergenic
CATGTGGTGGGTGCACTACT+GGG 0.351022 3.2:-71519810 None:intergenic
TGCACATAAGGTGGTGTTAC+AGG 0.351554 3.2:-71520246 None:intergenic
GGCACATAAGGTGGATGTAC+TGG 0.360540 3.2:-71519844 None:intergenic
TGCATATATGATTAATAAGC+TGG 0.363723 3.2:-71520660 None:intergenic
TATGGTGGTGGTTTCACAAC+CGG 0.372564 3.2:-71519922 None:intergenic
GCTTCAAGGACTTGTTGATT+TGG 0.376763 3.2:+71520515 MS.gene73893:CDS
TCCATTGATGCTTTGAAGTT+GGG 0.377397 3.2:+71520417 MS.gene73893:CDS
GGTGTTGGTGGTGTTACAAT+AGG 0.381877 3.2:-71520276 None:intergenic
ACAGGGACAACTGGTGGTTT+AGG 0.382129 3.2:-71519982 None:intergenic
ACAGGGACAACTGGTGGTTT+AGG 0.382129 3.2:-71520054 None:intergenic
GGTTTGTGAACTGGTGGTTT+AGG 0.384230 3.2:-71519694 None:intergenic
GGTTTCACAATTGGTGGCTT+AGG 0.387848 3.2:-71520093 None:intergenic
TGAACTGGTGGCTTAACAAT+AGG 0.393111 3.2:-71519646 None:intergenic
GGTTTCACAATTGGAGGTGT+TGG 0.396026 3.2:-71520180 None:intergenic
GCTGGGCACTTAAACCCTTC+TGG 0.397405 3.2:-71520642 None:intergenic
GGTGGTGTTACAGGCACAAC+TGG 0.421124 3.2:-71520237 None:intergenic
ACTATTGGAGGTTTAACAAT+TGG 0.422358 3.2:-71519874 None:intergenic
TACTTTGGTGGTTTGTGAAC+TGG 0.426515 3.2:-71519661 None:intergenic
ACATGTTGTCCATTGCTTCA+AGG 0.426797 3.2:+71520501 MS.gene73893:CDS
ATAGGTGGTGGTTGCACATA+AGG 0.432534 3.2:-71520258 None:intergenic
CTTCAGGTTCTCATTGATTG+TGG 0.435240 3.2:+71520609 MS.gene73893:CDS
TATCTTGGTGGTTTGTGAAC+TGG 0.440214 3.2:-71519703 None:intergenic
GTTTCACAATTGGAGGTGTT+GGG 0.441037 3.2:-71520179 None:intergenic
TGAACTGGTGGTTTAGGAGT+AGG 0.443038 3.2:-71519688 None:intergenic
GGTGGTTTAGGGCTTGGGTA+AGG 0.443106 3.2:-71519610 None:intergenic
AAGAAGTTTAAGTCTAATAG+TGG 0.443363 3.2:-71520559 None:intergenic
ATGGAACATGTTTGTTGTGC+TGG 0.445283 3.2:-71520399 None:intergenic
TTCCATTGATGCTTTGAAGT+TGG 0.447409 3.2:+71520416 MS.gene73893:CDS
ATTGGAGGTGTTGGGACATA+AGG 0.448232 3.2:-71520171 None:intergenic
ACCACTGGTGGTGTCACAAT+TGG 0.450406 3.2:-71520306 None:intergenic
GCACATAAGGTGGATGTACT+GGG 0.453867 3.2:-71519843 None:intergenic
GTTTGTTGTGCTGGTGGTGT+AGG 0.454264 3.2:-71520390 None:intergenic
GGTCTCACAACAGGTGGCTT+AGG 0.454580 3.2:-71520021 None:intergenic
GGTGGCGGTGATGGTACAAC+TGG 0.464332 3.2:-71520150 None:intergenic
ATGGTGGTGGTTTCACAACC+GGG 0.469584 3.2:-71519921 None:intergenic
ATTGGAGGTGTTGGTGTTGG+TGG 0.473389 3.2:-71520288 None:intergenic
ACGTAAGGTGGATGTACTAT+TGG 0.473876 3.2:-71519889 None:intergenic
GATGGTTTAGGAGGATATCT+TGG 0.475788 3.2:-71519718 None:intergenic
ACATAGGGTGGTCTCACAAC+AGG 0.482961 3.2:-71519958 None:intergenic
ACATAGGGTGGTCTCACAAC+AGG 0.482961 3.2:-71520030 None:intergenic
GGTGGTGTTACAGGGACAAC+TGG 0.483517 3.2:-71519991 None:intergenic
GGTGGTGTTACAGGGACAAC+TGG 0.483517 3.2:-71520063 None:intergenic
GTCTCACAACAGGTGGCTTA+GGG 0.489664 3.2:-71519948 None:intergenic
ATAGGAGGGTGGTGTGTTGG+TGG 0.491865 3.2:-71519628 None:intergenic
ATTGGTGGTTTCACAATTGG+TGG 0.495782 3.2:-71520099 None:intergenic
ATTGGTGGTTTCACAATTGG+AGG 0.496030 3.2:-71520186 None:intergenic
ATTGGAGGTTTAACAATTGG+TGG 0.498001 3.2:-71519871 None:intergenic
TTAGGAGTAGGAGAATACTT+TGG 0.499134 3.2:-71519676 None:intergenic
GGTGCATGTGTTGATGTGCT+TGG 0.500450 3.2:+71520438 MS.gene73893:CDS
ACAGGTGGCTTAGGGACATA+TGG 0.500670 3.2:-71519940 None:intergenic
GCTGGTGGTGTAGGTGGATA+AGG 0.502339 3.2:-71520381 None:intergenic
GGTGTCACAATTGGAGGTGT+TGG 0.504887 3.2:-71520297 None:intergenic
GGTTTAGGAGGATATCTTGG+TGG 0.512387 3.2:-71519715 None:intergenic
GGATAAGGTACAAGTGGTGG+TGG 0.512801 3.2:-71520366 None:intergenic
CTTGGTGGACTCATACATAT+TGG 0.516064 3.2:+71520456 MS.gene73893:CDS
ACATGTGGTGGGAAAACAAT+TGG 0.519270 3.2:-71520117 None:intergenic
ATTGGTGGCTTAGGAACATA+AGG 0.519504 3.2:-71520084 None:intergenic
ACAATTGGAGGTGTTGGTGT+TGG 0.522248 3.2:-71520291 None:intergenic
GGGACATAAGGTGGCGGTGA+TGG 0.523501 3.2:-71520159 None:intergenic
TGTTGTGCTGGTGGTGTAGG+TGG 0.526757 3.2:-71520387 None:intergenic
GGAGTAGGAGAATACTTTGG+TGG 0.529075 3.2:-71519673 None:intergenic
ACAGGTGGCTTAGGAACATA+AGG 0.531513 3.2:-71520012 None:intergenic
GGACAAGGTGATGGTTTAGG+AGG 0.532067 3.2:-71519727 None:intergenic
GGTGTTTCACTAGGTGGTGT+TGG 0.533247 3.2:-71520336 None:intergenic
GGCTTAGGGACATATGGTGG+TGG 0.534071 3.2:-71519934 None:intergenic
GGAGGACATGGTGTTTCACT+AGG 0.536488 3.2:-71520345 None:intergenic
ACAATAGGAGGGTGGTGTGT+TGG 0.537158 3.2:-71519631 None:intergenic
GCATGTGTTGATGTGCTTGG+TGG 0.537915 3.2:+71520441 MS.gene73893:CDS
CTCATACATATTGGTATCGG+TGG 0.543738 3.2:+71520465 MS.gene73893:CDS
GATGGTACAACTGGAGGTAG+TGG 0.546745 3.2:-71520141 None:intergenic
AACTGGTGGTTTAGGTACAT+AGG 0.546797 3.2:-71519974 None:intergenic
AACTGGTGGTTTAGGTACAT+AGG 0.546797 3.2:-71520046 None:intergenic
ATGTGGTGGGTGCACTACTG+GGG 0.548341 3.2:-71519809 None:intergenic
GCAAGCAAGAACATTGAGTA+AGG 0.548467 3.2:-71519578 None:intergenic
GGTGGTGTTACAATAGGTGG+TGG 0.552132 3.2:-71520270 None:intergenic
TAAGGTGGATGTACTATTGG+AGG 0.552788 3.2:-71519886 None:intergenic
ACAGGCACAACTGGAGGTAG+AGG 0.553941 3.2:-71520228 None:intergenic
ACAAGTGGTGGTGGAGGACA+TGG 0.555606 3.2:-71520357 None:intergenic
TAAGGTACAAGTGGTGGTGG+AGG 0.557029 3.2:-71520363 None:intergenic
TCAACAAGTCCTTGAAGCAA+TGG 0.557441 3.2:-71520510 None:intergenic
GGTGTTGGTGGTGTAACCAC+TGG 0.559606 3.2:-71520321 None:intergenic
GGAGGTGTTGGGACATAAGG+TGG 0.568088 3.2:-71520168 None:intergenic
CTTGGTGGTTTGTGAACTGG+TGG 0.569251 3.2:-71519700 None:intergenic
ACCTTACGTACCAAAACCCC+CGG 0.570737 3.2:+71519903 MS.gene73893:CDS
CAATGAGAACCTGAAGAGCA+AGG 0.571048 3.2:-71520602 None:intergenic
GAACATGTTTGTTGTGCTGG+TGG 0.572842 3.2:-71520396 None:intergenic
GAACATAAGGTGGTGTTACA+GGG 0.574230 3.2:-71519999 None:intergenic
GAACATAAGGTGGTGTTACA+GGG 0.574230 3.2:-71520071 None:intergenic
TGGTGGTGGTTTCACAACCG+GGG 0.576934 3.2:-71519920 None:intergenic
GCATATATGATTAATAAGCT+GGG 0.577240 3.2:-71520659 None:intergenic
TGTGGTGGGTGCACTACTGG+GGG 0.578476 3.2:-71519808 None:intergenic
GTTGGTGGTGTTACAATAGG+TGG 0.578628 3.2:-71520273 None:intergenic
ACTGGTGGCTTAACAATAGG+AGG 0.579565 3.2:-71519643 None:intergenic
ACCCAACTTCAAAGCATCAA+TGG 0.579869 3.2:-71520418 None:intergenic
AGGTACTCAAGTTCAAGAGA+AGG 0.579976 3.2:-71519558 None:intergenic
GTTTCACTAGGTGGTGTTGG+TGG 0.580655 3.2:-71520333 None:intergenic
TTTGGTGGTTTGTGAACTGG+TGG 0.584308 3.2:-71519658 None:intergenic
CAAGAGAAGGATGAAAACAT+TGG 0.585017 3.2:-71519545 None:intergenic
AATGAGAACCTGAAGAGCAA+GGG 0.587112 3.2:-71520601 None:intergenic
GGAGGTAGTGGAACATGTGG+TGG 0.588460 3.2:-71520129 None:intergenic
GGACTCATACATATTGGTAT+CGG 0.594117 3.2:+71520462 MS.gene73893:CDS
TGTGGCAAAACTCCACCAGA+AGG 0.594689 3.2:+71520627 MS.gene73893:CDS
CACATAAGGTGGATGTACTG+GGG 0.597608 3.2:-71519842 None:intergenic
ACTGGTGGTTTAGGTACATA+GGG 0.604382 3.2:-71519973 None:intergenic
ACTGGTGGTTTAGGTACATA+GGG 0.604382 3.2:-71520045 None:intergenic
ACTGGTGGTGTCACAATTGG+AGG 0.619027 3.2:-71520303 None:intergenic
GGAGGTAGAGGAACATGTGG+TGG 0.622203 3.2:-71520216 None:intergenic
ATGAGAACCTGAAGAGCAAG+GGG 0.626266 3.2:-71520600 None:intergenic
TGTGGTGGGAAAACAATTGG+TGG 0.626847 3.2:-71520114 None:intergenic
GGCTTGGGTAAGGACAATAA+GGG 0.629172 3.2:-71519600 None:intergenic
GAGGTAGTGGAACATGTGGT+GGG 0.631936 3.2:-71520128 None:intergenic
GTGGCAAAACTCCACCAGAA+GGG 0.633657 3.2:+71520628 MS.gene73893:CDS
GTAGGTGGATAAGGTACAAG+TGG 0.636320 3.2:-71520372 None:intergenic
TCCAATTGTGACACCACCAG+TGG 0.639965 3.2:+71520305 MS.gene73893:CDS
GGGCACTTAAACCCTTCTGG+TGG 0.641808 3.2:-71520639 None:intergenic
GGTGTTACAGGGACAACTGG+TGG 0.641906 3.2:-71519988 None:intergenic
GGTGTTACAGGGACAACTGG+TGG 0.641906 3.2:-71520060 None:intergenic
GGCGGTGATGGTACAACTGG+AGG 0.645853 3.2:-71520147 None:intergenic
GGTGGATAAGGTACAAGTGG+TGG 0.651301 3.2:-71520369 None:intergenic
GGTGTTGGGACATAAGGTGG+CGG 0.673173 3.2:-71520165 None:intergenic
CTGGTGGCTTAACAATAGGA+GGG 0.675325 3.2:-71519642 None:intergenic
GGTGGTGGTTGCACATAAGG+TGG 0.679674 3.2:-71520255 None:intergenic
GGACATGGTGTTTCACTAGG+TGG 0.681972 3.2:-71520342 None:intergenic
TAGGGTGGTCTCACAACAGG+TGG 0.682111 3.2:-71519955 None:intergenic
TAGGGTGGTCTCACAACAGG+TGG 0.682111 3.2:-71520027 None:intergenic
GGTGTTACAGGCACAACTGG+AGG 0.684392 3.2:-71520234 None:intergenic
GGTGGTGGTTTCACAACCGG+GGG 0.687563 3.2:-71519919 None:intergenic
ACATAAGGTGGATGTACTGG+GGG 0.689428 3.2:-71519841 None:intergenic
GGTGGCTTAGGGACATATGG+TGG 0.693700 3.2:-71519937 None:intergenic
GGTGGCTTAGGAACATAAGG+TGG 0.699096 3.2:-71520081 None:intergenic
ACTGGAGGTAGAGGAACATG+TGG 0.699937 3.2:-71520219 None:intergenic
GTTGGTGGTGTAACCACTGG+TGG 0.706491 3.2:-71520318 None:intergenic
GGTGGCTTAGGAACATAAGG+TGG 0.709677 3.2:-71520009 None:intergenic
GTGGCTTAACAATAGGAGGG+TGG 0.714929 3.2:-71519639 None:intergenic
GGTGGTTTAGGTACATAGGG+TGG 0.730445 3.2:-71519970 None:intergenic
GGTGGTTTAGGTACATAGGG+TGG 0.730445 3.2:-71520042 None:intergenic
ACTGGAGGTAGTGGAACATG+TGG 0.746997 3.2:-71520132 None:intergenic
TGAGAACCTGAAGAGCAAGG+GGG 0.789043 3.2:-71520599 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
! AAGAAGTTTAAGTCTAATAG+TGG - chr3.2:71520562-71520581 None:intergenic 25.0%
ACTATTGGAGGTTTAACAAT+TGG - chr3.2:71519877-71519896 None:intergenic 30.0%
ATTGGAGGTTTAACAATTGG+TGG - chr3.2:71519874-71519893 None:intergenic 35.0%
CAAGAGAAGGATGAAAACAT+TGG - chr3.2:71519548-71519567 None:intergenic 35.0%
GGACTCATACATATTGGTAT+CGG + chr3.2:71520462-71520481 MS.gene73893:CDS 35.0%
TTAGGAGTAGGAGAATACTT+TGG - chr3.2:71519679-71519698 None:intergenic 35.0%
! ACAATTGGTGGTTTCACAAT+TGG - chr3.2:71520105-71520124 None:intergenic 35.0%
! ACATGTGGTGGAAAAACAAT+TGG - chr3.2:71520207-71520226 None:intergenic 35.0%
!! GGTTTAACAATTGGTGGTTT+TGG - chr3.2:71519868-71519887 None:intergenic 35.0%
!! TCCATTGATGCTTTGAAGTT+GGG + chr3.2:71520417-71520436 MS.gene73893:CDS 35.0%
!! TTCCATTGATGCTTTGAAGT+TGG + chr3.2:71520416-71520435 MS.gene73893:CDS 35.0%
AACTGGTGGTTTAGGTACAT+AGG - chr3.2:71519977-71519996 None:intergenic 40.0%
AATGAGAACCTGAAGAGCAA+GGG - chr3.2:71520604-71520623 None:intergenic 40.0%
ACATGTTGTCCATTGCTTCA+AGG + chr3.2:71520501-71520520 MS.gene73893:CDS 40.0%
ACGTAAGGTGGATGTACTAT+TGG - chr3.2:71519892-71519911 None:intergenic 40.0%
ACTGGTGGTTTAGGTACATA+GGG - chr3.2:71519976-71519995 None:intergenic 40.0%
AGGTACTCAAGTTCAAGAGA+AGG - chr3.2:71519561-71519580 None:intergenic 40.0%
GATGGTTTAGGAGGATATCT+TGG - chr3.2:71519721-71519740 None:intergenic 40.0%
GCAAGCAAGAACATTGAGTA+AGG - chr3.2:71519581-71519600 None:intergenic 40.0%
TAAGGTGGATGTACTATTGG+AGG - chr3.2:71519889-71519908 None:intergenic 40.0%
TCAACAAGTCCTTGAAGCAA+TGG - chr3.2:71520513-71520532 None:intergenic 40.0%
TGAACTGGTGGCTTAACAAT+AGG - chr3.2:71519649-71519668 None:intergenic 40.0%
! ACATGTGGTGGGAAAACAAT+TGG - chr3.2:71520120-71520139 None:intergenic 40.0%
! ACCCAACTTCAAAGCATCAA+TGG - chr3.2:71520421-71520440 None:intergenic 40.0%
! ATTGGTGGCTTAGGAACATA+AGG - chr3.2:71520087-71520106 None:intergenic 40.0%
! ATTGGTGGTTTCACAATTGG+AGG - chr3.2:71520102-71520121 None:intergenic 40.0%
! ATTGGTGGTTTCACAATTGG+TGG - chr3.2:71520102-71520121 None:intergenic 40.0%
! CTCATACATATTGGTATCGG+TGG + chr3.2:71520465-71520484 MS.gene73893:CDS 40.0%
! CTTCAGGTTCTCATTGATTG+TGG + chr3.2:71520609-71520628 MS.gene73893:CDS 40.0%
! TACTTTGGTGGTTTGTGAAC+TGG - chr3.2:71519664-71519683 None:intergenic 40.0%
! TATCTTGGTGGTTTGTGAAC+TGG - chr3.2:71519706-71519725 None:intergenic 40.0%
! TGTGGTGGAAAAACAATTGG+TGG - chr3.2:71520204-71520223 None:intergenic 40.0%
!! ATGGAACATGTTTGTTGTGC+TGG - chr3.2:71520402-71520421 None:intergenic 40.0%
!! CTTGGTGGACTCATACATAT+TGG + chr3.2:71520456-71520475 MS.gene73893:CDS 40.0%
!! GAACATAAGGTGGTGTTACA+GGG - chr3.2:71520002-71520021 None:intergenic 40.0%
!! GCTTCAAGGACTTGTTGATT+TGG + chr3.2:71520515-71520534 MS.gene73893:CDS 40.0%
!! GTTTCACAATTGGAGGTGTT+GGG - chr3.2:71520182-71520201 None:intergenic 40.0%
!! TTTGGAACATGTGGTGGTTT+TGG - chr3.2:71519769-71519788 None:intergenic 40.0%
!!! ATTGGTGGTTTTGGCACATA+AGG - chr3.2:71519859-71519878 None:intergenic 40.0%
!!! GTGGTTTTGGTGTTGATGAT+GGG - chr3.2:71519756-71519775 None:intergenic 40.0%
!!! TGGTTTTGGTGTTGATGATG+GGG - chr3.2:71519755-71519774 None:intergenic 40.0%
ACAGGTGGCTTAGGAACATA+AGG - chr3.2:71520015-71520034 None:intergenic 45.0%
ACATAAGGTGGATGTACTGG+GGG - chr3.2:71519844-71519863 None:intergenic 45.0%
ACTGGTGGCTTAACAATAGG+AGG - chr3.2:71519646-71519665 None:intergenic 45.0%
ATGAGAACCTGAAGAGCAAG+GGG - chr3.2:71520603-71520622 None:intergenic 45.0%
CAATGAGAACCTGAAGAGCA+AGG - chr3.2:71520605-71520624 None:intergenic 45.0%
CACATAAGGTGGATGTACTG+GGG - chr3.2:71519845-71519864 None:intergenic 45.0%
CTGGTGGCTTAACAATAGGA+GGG - chr3.2:71519645-71519664 None:intergenic 45.0%
GCACATAAGGTGGATGTACT+GGG - chr3.2:71519846-71519865 None:intergenic 45.0%
GGAGTAGGAGAATACTTTGG+TGG - chr3.2:71519676-71519695 None:intergenic 45.0%
GGCTTGGGTAAGGACAATAA+GGG - chr3.2:71519603-71519622 None:intergenic 45.0%
GGTTTAGGAGGATATCTTGG+TGG - chr3.2:71519718-71519737 None:intergenic 45.0%
GGTTTGTGAACTGGTGGTTT+AGG - chr3.2:71519697-71519716 None:intergenic 45.0%
GTAGGTGGATAAGGTACAAG+TGG - chr3.2:71520375-71520394 None:intergenic 45.0%
TGAACTGGTGGTTTAGGAGT+AGG - chr3.2:71519691-71519710 None:intergenic 45.0%
! ATAGGTGGTGGTTGCACATA+AGG - chr3.2:71520261-71520280 None:intergenic 45.0%
! GGTTTCACAATTGGAGGTGT+TGG - chr3.2:71520183-71520202 None:intergenic 45.0%
! GGTTTCACAATTGGTGGCTT+AGG - chr3.2:71520096-71520115 None:intergenic 45.0%
! TGTGGTGGGAAAACAATTGG+TGG - chr3.2:71520117-71520136 None:intergenic 45.0%
! TTGGGATGATGAGGAGGTTT+TGG - chr3.2:71519787-71519806 None:intergenic 45.0%
! TTTGGTGGTTTGTGAACTGG+TGG - chr3.2:71519661-71519680 None:intergenic 45.0%
!! ACAATTGGAGGTGTTGGTGT+TGG - chr3.2:71520294-71520313 None:intergenic 45.0%
!! ATTGGAGGTGTTGGGACATA+AGG - chr3.2:71520174-71520193 None:intergenic 45.0%
!! GAACATGTTTGTTGTGCTGG+TGG - chr3.2:71520399-71520418 None:intergenic 45.0%
!! GGAACATAAGGTGGTGTTAC+AGG - chr3.2:71520003-71520022 None:intergenic 45.0%
!! GGTGTTGGTGGTGTTACAAT+AGG - chr3.2:71520279-71520298 None:intergenic 45.0%
!! GTTGGTGGTGTTACAATAGG+TGG - chr3.2:71520276-71520295 None:intergenic 45.0%
!! TATGGTGGTGGTTTCACAAC+CGG - chr3.2:71519925-71519944 None:intergenic 45.0%
!! TGCACATAAGGTGGTGTTAC+AGG - chr3.2:71520249-71520268 None:intergenic 45.0%
!!! GGTGGTTTTGGTGTTGATGA+TGG - chr3.2:71519757-71519776 None:intergenic 45.0%
!!! GGTTTTGGTGTTGATGATGG+GGG - chr3.2:71519754-71519773 None:intergenic 45.0%
!!! TGAGGAGGTTTTGGAACATG+TGG - chr3.2:71519778-71519797 None:intergenic 45.0%
ACAATAGGAGGGTGGTGTGT+TGG - chr3.2:71519634-71519653 None:intergenic 50.0%
ACAGGGACAACTGGTGGTTT+AGG - chr3.2:71519985-71520004 None:intergenic 50.0%
ACAGGTGGCTTAGGGACATA+TGG - chr3.2:71519943-71519962 None:intergenic 50.0%
ACATAGGGTGGTCTCACAAC+AGG - chr3.2:71519961-71519980 None:intergenic 50.0%
ACCTTACGTACCAAAACCCC+CGG + chr3.2:71519903-71519922 MS.gene73893:CDS 50.0%
ACTGGAGGTAGAGGAACATG+TGG - chr3.2:71520222-71520241 None:intergenic 50.0%
GATGGTACAACTGGAGGTAG+TGG - chr3.2:71520144-71520163 None:intergenic 50.0%
GGACATGGTGTTTCACTAGG+TGG - chr3.2:71520345-71520364 None:intergenic 50.0%
GGAGGACATGGTGTTTCACT+AGG - chr3.2:71520348-71520367 None:intergenic 50.0%
GGATAAGGTACAAGTGGTGG+TGG - chr3.2:71520369-71520388 None:intergenic 50.0%
GGCACATAAGGTGGATGTAC+TGG - chr3.2:71519847-71519866 None:intergenic 50.0%
GGGCTTGGGTAAGGACAATA+AGG - chr3.2:71519604-71519623 None:intergenic 50.0%
GGTGGATAAGGTACAAGTGG+TGG - chr3.2:71520372-71520391 None:intergenic 50.0%
GGTGGCTTAGGAACATAAGG+TGG - chr3.2:71520012-71520031 None:intergenic 50.0%
GGTGGTTTAGGTACATAGGG+TGG - chr3.2:71519973-71519992 None:intergenic 50.0%
GGTGTTTCACTAGGTGGTGT+TGG - chr3.2:71520339-71520358 None:intergenic 50.0%
GTCTCACAACAGGTGGCTTA+GGG - chr3.2:71519951-71519970 None:intergenic 50.0%
GTGGCAAAACTCCACCAGAA+GGG + chr3.2:71520628-71520647 MS.gene73893:CDS 50.0%
GTGGCTTAACAATAGGAGGG+TGG - chr3.2:71519642-71519661 None:intergenic 50.0%
TCCAATTGTGACACCACCAG+TGG + chr3.2:71520305-71520324 MS.gene73893:CDS 50.0%
TGAGAACCTGAAGAGCAAGG+GGG - chr3.2:71520602-71520621 None:intergenic 50.0%
TGTGGCAAAACTCCACCAGA+AGG + chr3.2:71520627-71520646 MS.gene73893:CDS 50.0%
TGTTATCCCCCTTGCTCTTC+AGG + chr3.2:71520593-71520612 MS.gene73893:CDS 50.0%
! CTTGGTGGTTTGTGAACTGG+TGG - chr3.2:71519703-71519722 None:intergenic 50.0%
! GCATGTGTTGATGTGCTTGG+TGG + chr3.2:71520441-71520460 MS.gene73893:CDS 50.0%
! GGACAAGGTGATGGTTTAGG+AGG - chr3.2:71519730-71519749 None:intergenic 50.0%
! GGTGCATGTGTTGATGTGCT+TGG + chr3.2:71520438-71520457 MS.gene73893:CDS 50.0%
! GGTGGACAAGGTGATGGTTT+AGG - chr3.2:71519733-71519752 None:intergenic 50.0%
! GGTGTCACAATTGGAGGTGT+TGG - chr3.2:71520300-71520319 None:intergenic 50.0%
! GTTTCACTAGGTGGTGTTGG+TGG - chr3.2:71520336-71520355 None:intergenic 50.0%
!! ACCACTGGTGGTGTCACAAT+TGG - chr3.2:71520309-71520328 None:intergenic 50.0%
!! ACTGGAGGTAGTGGAACATG+TGG - chr3.2:71520135-71520154 None:intergenic 50.0%
!! ACTGGTGGTGTCACAATTGG+AGG - chr3.2:71520306-71520325 None:intergenic 50.0%
!! ATGGTGGTGGTTTCACAACC+GGG - chr3.2:71519924-71519943 None:intergenic 50.0%
!! ATTGGAGGTGTTGGTGTTGG+TGG - chr3.2:71520291-71520310 None:intergenic 50.0%
!! GAGGTAGTGGAACATGTGGT+GGG - chr3.2:71520131-71520150 None:intergenic 50.0%
!! GGTGGTGTGTTGGTGGTTTA+GGG - chr3.2:71519624-71519643 None:intergenic 50.0%
!! GGTGGTGTTACAATAGGTGG+TGG - chr3.2:71520273-71520292 None:intergenic 50.0%
!! GTGTTGGTGGTTTAGGGCTT+GGG - chr3.2:71519618-71519637 None:intergenic 50.0%
!! GTTTGTTGTGCTGGTGGTGT+AGG - chr3.2:71520393-71520412 None:intergenic 50.0%
!! TAAGGTACAAGTGGTGGTGG+AGG - chr3.2:71520366-71520385 None:intergenic 50.0%
!! TGTGTTGGTGGTTTAGGGCT+TGG - chr3.2:71519619-71519638 None:intergenic 50.0%
!! TTTGGTGTTGATGATGGGGG+TGG - chr3.2:71519751-71519770 None:intergenic 50.0%
!!! ACTGGGGGTTTTGGAACATG+TGG - chr3.2:71519829-71519848 None:intergenic 50.0%
!!! GGAGGTTTTGGAACATGTGG+TGG - chr3.2:71519775-71519794 None:intergenic 50.0%
!!! GGGGTTTTGGAACATGTGGT+GGG - chr3.2:71519825-71519844 None:intergenic 50.0%
!!! GGTGGTTTTGGCACATAAGG+TGG - chr3.2:71519856-71519875 None:intergenic 50.0%
ACAGGCACAACTGGAGGTAG+AGG - chr3.2:71520231-71520250 None:intergenic 55.0%
ATAGGAGGGTGGTGTGTTGG+TGG - chr3.2:71519631-71519650 None:intergenic 55.0%
GCTGGGCACTTAAACCCTTC+TGG - chr3.2:71520645-71520664 None:intergenic 55.0%
GGAGGTAGAGGAACATGTGG+TGG - chr3.2:71520219-71520238 None:intergenic 55.0%
GGCTTAGGGACATATGGTGG+TGG - chr3.2:71519937-71519956 None:intergenic 55.0%
GGGCACTTAAACCCTTCTGG+TGG - chr3.2:71520642-71520661 None:intergenic 55.0%
GGTCTCACAACAGGTGGCTT+AGG - chr3.2:71519952-71519971 None:intergenic 55.0%
GGTGGCTTAGGGACATATGG+TGG - chr3.2:71519940-71519959 None:intergenic 55.0%
TAGGGTGGTCTCACAACAGG+TGG - chr3.2:71519958-71519977 None:intergenic 55.0%
! ACTGGGGGTTTGGGATGATG+AGG - chr3.2:71519796-71519815 None:intergenic 55.0%
! GCTGGTGGTGTAGGTGGATA+AGG - chr3.2:71520384-71520403 None:intergenic 55.0%
! GGTGGATGTACTGGGGGTTT+TGG - chr3.2:71519838-71519857 None:intergenic 55.0%
! GGTGGTGGTTGCACATAAGG+TGG - chr3.2:71520258-71520277 None:intergenic 55.0%
! GGTGGTTTAGGGCTTGGGTA+AGG - chr3.2:71519613-71519632 None:intergenic 55.0%
! GGTGTTACAGGCACAACTGG+AGG - chr3.2:71520237-71520256 None:intergenic 55.0%
! GGTGTTACAGGGACAACTGG+TGG - chr3.2:71519991-71520010 None:intergenic 55.0%
! GGTGTTGGGACATAAGGTGG+CGG - chr3.2:71520168-71520187 None:intergenic 55.0%
! GGTTTCACAACCGGGGGTTT+TGG - chr3.2:71519916-71519935 None:intergenic 55.0%
! TGTTGTGCTGGTGGTGTAGG+TGG - chr3.2:71520390-71520409 None:intergenic 55.0%
!! ACAAGTGGTGGTGGAGGACA+TGG - chr3.2:71520360-71520379 None:intergenic 55.0%
!! ACATGTGGTGGGTGCACTAC+TGG - chr3.2:71519814-71519833 None:intergenic 55.0%
!! ACCGGGGGTTTTGGTACGTA+AGG - chr3.2:71519907-71519926 None:intergenic 55.0%
!! ATGTGGTGGGTGCACTACTG+GGG - chr3.2:71519812-71519831 None:intergenic 55.0%
!! CATGTGGTGGGTGCACTACT+GGG - chr3.2:71519813-71519832 None:intergenic 55.0%
!! GGAGGTAGTGGAACATGTGG+TGG - chr3.2:71520132-71520151 None:intergenic 55.0%
!! GGAGGTGTTGGGACATAAGG+TGG - chr3.2:71520171-71520190 None:intergenic 55.0%
!! GGGGGTTTTGGTACGTAAGG+TGG - chr3.2:71519904-71519923 None:intergenic 55.0%
!! GGGTGGTGTGTTGGTGGTTT+AGG - chr3.2:71519625-71519644 None:intergenic 55.0%
!! GGTGGTGTTACAGGCACAAC+TGG - chr3.2:71520240-71520259 None:intergenic 55.0%
!! GGTGGTGTTACAGGGACAAC+TGG - chr3.2:71519994-71520013 None:intergenic 55.0%
!! GGTGTTGGTGGTGTAACCAC+TGG - chr3.2:71520324-71520343 None:intergenic 55.0%
!! GTTGATGATGGGGGTGGACA+AGG - chr3.2:71519745-71519764 None:intergenic 55.0%
!! GTTGGTGGTGTAACCACTGG+TGG - chr3.2:71520321-71520340 None:intergenic 55.0%
!! TGGTGGTGGTTTCACAACCG+GGG - chr3.2:71519923-71519942 None:intergenic 55.0%
!!! GGGGGTTTTGGAACATGTGG+TGG - chr3.2:71519826-71519845 None:intergenic 55.0%
GATGGGGGTGGACAAGGTGA+TGG - chr3.2:71519739-71519758 None:intergenic 60.0%
GGGTGCACTACTGGGGGTTT+GGG - chr3.2:71519805-71519824 None:intergenic 60.0%
TGGGTGCACTACTGGGGGTT+TGG - chr3.2:71519806-71519825 None:intergenic 60.0%
! GGCGGTGATGGTACAACTGG+AGG - chr3.2:71520150-71520169 None:intergenic 60.0%
! GGGACATAAGGTGGCGGTGA+TGG - chr3.2:71520162-71520181 None:intergenic 60.0%
! GGGGGTTTGGGATGATGAGG+AGG - chr3.2:71519793-71519812 None:intergenic 60.0%
! GGTGGCGGTGATGGTACAAC+TGG - chr3.2:71520153-71520172 None:intergenic 60.0%
! GGTGGTGGTTTCACAACCGG+GGG - chr3.2:71519922-71519941 None:intergenic 60.0%
!! TGTGGTGGGTGCACTACTGG+GGG - chr3.2:71519811-71519830 None:intergenic 60.0%


Chromosome Type Strat End Strand Name
chr3.2 gene 71519526 71520671 71519526 ID=MS.gene73893
chr3.2 mRNA 71519526 71520671 71519526 ID=MS.gene73893.t1;Parent=MS.gene73893
chr3.2 exon 71519526 71520671 71519526 ID=MS.gene73893.t1.exon1;Parent=MS.gene73893.t1
chr3.2 CDS 71519526 71520671 71519526 ID=cds.MS.gene73893.t1;Parent=MS.gene73893.t1
Gene Sequence

>MS.gene73893

ATGGCTAACTATGCTCTAGCCAATGTTTTCATCCTTCTCTTGAACTTGAGTACCTTACTCAATGTTCTTGCTTGCCCTTATTGTCCTTACCCAAGCCCTAAACCACCAACACACCACCCTCCTATTGTTAAGCCACCAGTTCACAAACCACCAAAGTATTCTCCTACTCCTAAACCACCAGTTCACAAACCACCAAGATATCCTCCTAAACCATCACCTTGTCCACCCCCATCATCAACACCAAAACCACCACATGTTCCAAAACCTCCTCATCATCCCAAACCCCCAGTAGTGCACCCACCACATGTTCCAAAACCCCCAGTACATCCACCTTATGTGCCAAAACCACCAATTGTTAAACCTCCAATAGTACATCCACCTTACGTACCAAAACCCCCGGTTGTGAAACCACCACCATATGTCCCTAAGCCACCTGTTGTGAGACCACCCTATGTACCTAAACCACCAGTTGTCCCTGTAACACCACCTTATGTTCCTAAGCCACCTGTTGTGAGACCACCCTATGTACCTAAACCACCAGTTGTCCCTGTAACACCACCTTATGTTCCTAAGCCACCAATTGTGAAACCACCAATTGTTTTCCCACCACATGTTCCACTACCTCCAGTTGTACCATCACCGCCACCTTATGTCCCAACACCTCCAATTGTGAAACCACCAATTGTTTTTCCACCACATGTTCCTCTACCTCCAGTTGTGCCTGTAACACCACCTTATGTGCAACCACCACCTATTGTAACACCACCAACACCAACACCTCCAATTGTGACACCACCAGTGGTTACACCACCAACACCACCTAGTGAAACACCATGTCCTCCACCACCACTTGTACCTTATCCACCTACACCACCAGCACAACAAACATGTTCCATTGATGCTTTGAAGTTGGGTGCATGTGTTGATGTGCTTGGTGGACTCATACATATTGGTATCGGTGGAAGTGCTAAACAAACATGTTGTCCATTGCTTCAAGGACTTGTTGATTTGGATGCAGCTATATGTCTCTGCACCACTATTAGACTTAAACTTCTTAATATCAATCTTGTTATCCCCCTTGCTCTTCAGGTTCTCATTGATTGTGGCAAAACTCCACCAGAAGGGTTTAAGTGCCCAGCTTATTAA
Protein sequence

>MS.gene73893.t1

MANYALANVFILLLNLSTLLNVLACPYCPYPSPKPPTHHPPIVKPPVHKPPKYSPTPKPPVHKPPRYPPKPSPCPPPSSTPKPPHVPKPPHHPKPPVVHPPHVPKPPVHPPYVPKPPIVKPPIVHPPYVPKPPVVKPPPYVPKPPVVRPPYVPKPPVVPVTPPYVPKPPVVRPPYVPKPPVVPVTPPYVPKPPIVKPPIVFPPHVPLPPVVPSPPPYVPTPPIVKPPIVFPPHVPLPPVVPVTPPYVQPPPIVTPPTPTPPIVTPPVVTPPTPPSETPCPPPPLVPYPPTPPAQQTCSIDALKLGACVDVLGGLIHIGIGGSAKQTCCPLLQGLVDLDAAICLCTTIRLKLLNINLVIPLALQVLIDCGKTPPEGFKCPAY