AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene69607


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene69607.t1 MTR_4g101270 69.412 85 26 0 295 379 103 187 2.16e-33 123
MS.gene69607.t1 MTR_1g012700 46.970 132 55 4 249 379 47 164 4.91e-24 97.4
MS.gene69607.t1 MTR_1g012690 51.613 93 43 2 288 379 63 154 2.52e-23 95.5
MS.gene69607.t1 MTR_1g012630 51.163 86 40 2 295 379 126 210 6.93e-22 93.2
MS.gene69607.t1 MTR_1g012710 55.556 81 34 2 300 379 72 151 1.44e-21 90.5
MS.gene69607.t1 MTR_4g115360 62.222 90 34 0 290 379 144 233 8.90e-19 85.1
MS.gene69607.t1 MTR_4g101330 48.810 84 34 4 300 378 89 168 3.87e-18 81.6
MS.gene69607.t1 MTR_3g106740 49.412 85 34 4 300 379 50 130 2.74e-16 75.1
MS.gene69607.t1 MTR_4g101260 45.882 85 44 2 296 379 49 132 8.98e-16 73.9
MS.gene69607.t1 MTR_4g101280 47.619 84 37 4 300 379 63 143 9.73e-16 73.9
MS.gene69607.t1 MTR_2g026760 45.161 93 46 4 287 378 38 126 1.05e-15 73.6
MS.gene69607.t1 MTR_4g108150 43.689 103 53 3 278 379 25 123 1.40e-15 73.2
MS.gene69607.t1 MTR_4g101310 46.914 81 42 1 300 379 54 134 5.78e-14 68.9
MS.gene69607.t1 MTR_5g012340 39.080 87 51 2 293 378 91 176 1.31e-12 66.2
MS.gene69607.t1 MTR_5g012380 37.778 90 48 3 293 378 84 169 1.91e-12 65.5
MS.gene69607.t1 MTR_3g106750 48.148 81 41 1 300 379 49 129 2.01e-11 61.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene69607.t1 AT3G22142 45.013 391 126 17 35 380 1134 1480 9.51e-58 203
MS.gene69607.t1 AT4G15160 78.161 87 17 2 295 379 97 183 1.08e-38 137
MS.gene69607.t1 AT2G10940 49.049 263 113 10 125 378 39 289 3.07e-37 136
MS.gene69607.t1 AT2G10940 49.049 263 113 10 125 378 39 289 3.07e-37 136
MS.gene69607.t1 AT1G62500 72.619 84 23 0 296 379 211 294 4.04e-36 134
MS.gene69607.t1 AT4G12490 49.462 93 46 1 288 379 90 182 7.04e-25 100
MS.gene69607.t1 AT4G12470 53.659 82 37 1 299 379 80 161 4.85e-23 94.7
MS.gene69607.t1 AT4G12480 53.659 82 37 1 299 379 87 168 2.40e-22 93.2
MS.gene69607.t1 AT4G12500 52.439 82 38 1 299 379 96 177 2.45e-22 93.6
MS.gene69607.t1 AT1G62510 50.602 83 34 3 300 378 70 149 3.66e-18 80.9
MS.gene69607.t1 AT1G12100 48.235 85 43 1 296 379 48 132 3.70e-18 80.5
MS.gene69607.t1 AT2G45180 49.412 85 41 2 296 379 51 134 2.21e-17 78.6
MS.gene69607.t1 AT4G12520 48.837 86 33 3 300 379 49 129 1.11e-16 76.3
MS.gene69607.t1 AT4G12510 48.837 86 33 3 300 379 49 129 1.11e-16 76.3
MS.gene69607.t1 AT5G46890 45.263 95 43 5 288 379 39 127 1.31e-16 76.3
MS.gene69607.t1 AT5G46900 47.126 87 37 5 296 379 47 127 5.06e-16 74.3
MS.gene69607.t1 AT4G12530 46.591 88 45 2 293 379 30 116 1.17e-15 73.2
MS.gene69607.t1 AT1G12090 45.783 83 38 3 300 378 58 137 1.45e-14 70.5
MS.gene69607.t1 AT4G22460 40.000 115 55 4 272 377 22 131 3.25e-14 69.7
MS.gene69607.t1 AT4G00165 42.718 103 50 4 278 378 33 128 1.11e-13 67.8
MS.gene69607.t1 AT4G00165 42.718 103 50 4 278 378 33 128 1.11e-13 67.8
MS.gene69607.t1 AT4G12550 36.735 98 59 3 284 379 15 111 1.60e-12 63.9

Find 153 sgRNAs with CRISPR-Local

Find 163 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGGTGGTGTGTTGGTGGTTT+AGG 0.101165 3.4:-53132908 None:intergenic
GGTGGTGTGTTGGTGGTTTA+GGG 0.179821 3.4:-53132907 None:intergenic
TTGGGATGATGAGGAGGTTT+TGG 0.213303 3.4:-53133070 None:intergenic
ACATGTGGTGGGTGCACTAC+TGG 0.227597 3.4:-53133097 None:intergenic
GTGTTGGTGGTTTAGGGCTT+GGG 0.277482 3.4:-53132901 None:intergenic
TTTGGAACATGTGGTGGTTT+TGG 0.297398 3.4:-53133052 None:intergenic
TGTGTTGGTGGTTTAGGGCT+TGG 0.305036 3.4:-53132902 None:intergenic
GGTTTAACAATTGGTGGTTT+TGG 0.308951 3.4:-53133151 None:intergenic
GGGCTTGGGTAAGGACAATA+AGG 0.310531 3.4:-53132887 None:intergenic
ACAATTGGTGGTTTCACAAT+TGG 0.325867 3.4:-53133475 None:intergenic
GGAACATAAGGTGGTGTTAC+AGG 0.335642 3.4:-53133286 None:intergenic
GGAACATAAGGTGGTGTTAC+AGG 0.335642 3.4:-53133358 None:intergenic
GGTCTCACAACAGGTGGCTT+AGG 0.336071 3.4:-53133235 None:intergenic
GGTGGACAAGGTGATGGTTT+AGG 0.339269 3.4:-53133016 None:intergenic
ACAATTGGTGGTTTCACAAT+TGG 0.349052 3.4:-53133388 None:intergenic
CATGTGGTGGGTGCACTACT+GGG 0.351022 3.4:-53133096 None:intergenic
TGCACATAAGGTGGTGTTAC+AGG 0.351554 3.4:-53133532 None:intergenic
GGCACATAAGGTGGATGTAC+TGG 0.360540 3.4:-53133130 None:intergenic
TGCATATATGATTAATAAGC+TGG 0.363723 3.4:-53133946 None:intergenic
TATGGTGGTGGTTTCACAAC+CGG 0.372564 3.4:-53133208 None:intergenic
GCTTCAAGGACTTGTTGATT+TGG 0.376763 3.4:+53133801 MS.gene69607:CDS
TCCATTGATGCTTTGAAGTT+GGG 0.377397 3.4:+53133703 MS.gene69607:CDS
GGTGTTGGTGGTGTTACAAT+AGG 0.381877 3.4:-53133562 None:intergenic
ACAGGGACAACTGGTGGTTT+AGG 0.382129 3.4:-53133268 None:intergenic
ACAGGGACAACTGGTGGTTT+AGG 0.382129 3.4:-53133340 None:intergenic
GGTTTGTGAACTGGTGGTTT+AGG 0.384230 3.4:-53132980 None:intergenic
GGTTTCACAATTGGTGGCTT+AGG 0.387848 3.4:-53133379 None:intergenic
TGAACTGGTGGCTTAACAAT+AGG 0.393111 3.4:-53132932 None:intergenic
GCTGGGCACTTAAACCCTTC+TGG 0.397405 3.4:-53133928 None:intergenic
GGTGGTGTTACAGGCACAAC+TGG 0.421124 3.4:-53133523 None:intergenic
ACTATTGGAGGTTTAACAAT+TGG 0.422358 3.4:-53133160 None:intergenic
TACTTTGGTGGTTTGTGAAC+TGG 0.426515 3.4:-53132947 None:intergenic
ACATGTTGTCCATTGCTTCA+AGG 0.426797 3.4:+53133787 MS.gene69607:CDS
ATAGGTGGTGGTTGCACATA+AGG 0.432534 3.4:-53133544 None:intergenic
CTTCAGGTTCTCATTGATTG+TGG 0.435240 3.4:+53133895 MS.gene69607:CDS
TATCTTGGTGGTTTGTGAAC+TGG 0.440214 3.4:-53132989 None:intergenic
TGAACTGGTGGTTTAGGAGT+AGG 0.443038 3.4:-53132974 None:intergenic
GGTGGTTTAGGGCTTGGGTA+AGG 0.443106 3.4:-53132896 None:intergenic
AAGAAGTTTAAGTCTAATAG+TGG 0.443363 3.4:-53133845 None:intergenic
ATGGAACATGTTTGTTGTGC+TGG 0.445283 3.4:-53133685 None:intergenic
TTCCATTGATGCTTTGAAGT+TGG 0.447409 3.4:+53133702 MS.gene69607:CDS
ACCACTGGTGGTGTCACAAT+TGG 0.450406 3.4:-53133592 None:intergenic
GCACATAAGGTGGATGTACT+GGG 0.453867 3.4:-53133129 None:intergenic
GTTTGTTGTGCTGGTGGTGT+AGG 0.454264 3.4:-53133676 None:intergenic
GGTCTCACAACAGGTGGCTT+AGG 0.454580 3.4:-53133307 None:intergenic
GGTGGCGGTGATGGTACAAC+TGG 0.464332 3.4:-53133436 None:intergenic
ATGGTGGTGGTTTCACAACC+GGG 0.469584 3.4:-53133207 None:intergenic
ATTGGAGGTGTTGGTGTTGG+TGG 0.473389 3.4:-53133574 None:intergenic
ACGTAAGGTGGATGTACTAT+TGG 0.473876 3.4:-53133175 None:intergenic
GATGGTTTAGGAGGATATCT+TGG 0.475788 3.4:-53133004 None:intergenic
GGTTTCACAATTGGAGGTGA+TGG 0.476485 3.4:-53133466 None:intergenic
ACATAGGGTGGTCTCACAAC+AGG 0.482961 3.4:-53133244 None:intergenic
ACATAGGGTGGTCTCACAAC+AGG 0.482961 3.4:-53133316 None:intergenic
GGTGGTGTTACAGGGACAAC+TGG 0.483517 3.4:-53133277 None:intergenic
GGTGGTGTTACAGGGACAAC+TGG 0.483517 3.4:-53133349 None:intergenic
GTCTCACAACAGGTGGCTTA+GGG 0.489664 3.4:-53133234 None:intergenic
ATAGGAGGGTGGTGTGTTGG+TGG 0.491865 3.4:-53132914 None:intergenic
ATTGGTGGTTTCACAATTGG+TGG 0.495782 3.4:-53133385 None:intergenic
ATTGGTGGTTTCACAATTGG+AGG 0.496030 3.4:-53133472 None:intergenic
ATTGGAGGTTTAACAATTGG+TGG 0.498001 3.4:-53133157 None:intergenic
TTAGGAGTAGGAGAATACTT+TGG 0.499134 3.4:-53132962 None:intergenic
GGTGCATGTGTTGATGTGCT+TGG 0.500450 3.4:+53133724 MS.gene69607:CDS
ACAGGTGGCTTAGGGACATA+TGG 0.500670 3.4:-53133226 None:intergenic
GCTGGTGGTGTAGGTGGATA+AGG 0.502339 3.4:-53133667 None:intergenic
GGTGTCACAATTGGAGGTGT+TGG 0.504887 3.4:-53133583 None:intergenic
ATTGGAGGTGATGGGACATA+AGG 0.505977 3.4:-53133457 None:intergenic
GGTTTAGGAGGATATCTTGG+TGG 0.512387 3.4:-53133001 None:intergenic
GGATAAGGTACAAGTGGTGG+TGG 0.512801 3.4:-53133652 None:intergenic
CTTGGTGGACTCATACATAT+TGG 0.516064 3.4:+53133742 MS.gene69607:CDS
ACATGTGGTGGGAAAACAAT+TGG 0.519270 3.4:-53133403 None:intergenic
ATTGGTGGCTTAGGAACATA+AGG 0.519504 3.4:-53133370 None:intergenic
ACAATTGGAGGTGTTGGTGT+TGG 0.522248 3.4:-53133577 None:intergenic
GGGACATAAGGTGGCGGTGA+TGG 0.522493 3.4:-53133445 None:intergenic
TGTTGTGCTGGTGGTGTAGG+TGG 0.526757 3.4:-53133673 None:intergenic
GGAGTAGGAGAATACTTTGG+TGG 0.529075 3.4:-53132959 None:intergenic
ACAGGTGGCTTAGGAACATA+AGG 0.531513 3.4:-53133298 None:intergenic
GGACAAGGTGATGGTTTAGG+AGG 0.532067 3.4:-53133013 None:intergenic
GGTGTTTCACTAGGTGGTGT+TGG 0.533247 3.4:-53133622 None:intergenic
GGCTTAGGGACATATGGTGG+TGG 0.534071 3.4:-53133220 None:intergenic
GGAGGACATGGTGTTTCACT+AGG 0.536488 3.4:-53133631 None:intergenic
ACAATAGGAGGGTGGTGTGT+TGG 0.537158 3.4:-53132917 None:intergenic
GCATGTGTTGATGTGCTTGG+TGG 0.537915 3.4:+53133727 MS.gene69607:CDS
CTCATACATATTGGTATCGG+TGG 0.543738 3.4:+53133751 MS.gene69607:CDS
GATGGTACAACTGGAGGTAG+TGG 0.546745 3.4:-53133427 None:intergenic
AACTGGTGGTTTAGGTACAT+AGG 0.546797 3.4:-53133260 None:intergenic
AACTGGTGGTTTAGGTACAT+AGG 0.546797 3.4:-53133332 None:intergenic
ATGTGGTGGGTGCACTACTG+GGG 0.548341 3.4:-53133095 None:intergenic
GCAAGCAAGAACATTGAGTA+AGG 0.548467 3.4:-53132864 None:intergenic
GTTTCACAATTGGAGGTGAT+GGG 0.551768 3.4:-53133465 None:intergenic
GGTGGTGTTACAATAGGTGG+TGG 0.552132 3.4:-53133556 None:intergenic
TAAGGTGGATGTACTATTGG+AGG 0.552788 3.4:-53133172 None:intergenic
ACAGGCACAACTGGAGGTAG+AGG 0.553941 3.4:-53133514 None:intergenic
ACAAGTGGTGGTGGAGGACA+TGG 0.555606 3.4:-53133643 None:intergenic
TAAGGTACAAGTGGTGGTGG+AGG 0.557029 3.4:-53133649 None:intergenic
TCAACAAGTCCTTGAAGCAA+TGG 0.557441 3.4:-53133796 None:intergenic
GGTGTTGGTGGTGTAACCAC+TGG 0.559606 3.4:-53133607 None:intergenic
GGAGGTGATGGGACATAAGG+TGG 0.568088 3.4:-53133454 None:intergenic
CTTGGTGGTTTGTGAACTGG+TGG 0.569251 3.4:-53132986 None:intergenic
ACCTTACGTACCAAAACCCC+CGG 0.570737 3.4:+53133189 MS.gene69607:CDS
CAATGAGAACCTGAAGAGCA+AGG 0.571048 3.4:-53133888 None:intergenic
GAACATGTTTGTTGTGCTGG+TGG 0.572842 3.4:-53133682 None:intergenic
GAACATAAGGTGGTGTTACA+GGG 0.574230 3.4:-53133285 None:intergenic
GAACATAAGGTGGTGTTACA+GGG 0.574230 3.4:-53133357 None:intergenic
TGGTGGTGGTTTCACAACCG+GGG 0.576934 3.4:-53133206 None:intergenic
GCATATATGATTAATAAGCT+GGG 0.577240 3.4:-53133945 None:intergenic
TGTGGTGGGTGCACTACTGG+GGG 0.578476 3.4:-53133094 None:intergenic
GTTGGTGGTGTTACAATAGG+TGG 0.578628 3.4:-53133559 None:intergenic
ACTGGTGGCTTAACAATAGG+AGG 0.579565 3.4:-53132929 None:intergenic
ACCCAACTTCAAAGCATCAA+TGG 0.579869 3.4:-53133704 None:intergenic
AGGTACTCAAGTTCAAGAGA+AGG 0.579976 3.4:-53132844 None:intergenic
GTTTCACTAGGTGGTGTTGG+TGG 0.580655 3.4:-53133619 None:intergenic
TTTGGTGGTTTGTGAACTGG+TGG 0.584308 3.4:-53132944 None:intergenic
CAAGAGAAGGATGAAAACAT+TGG 0.585017 3.4:-53132831 None:intergenic
AATGAGAACCTGAAGAGCAA+GGG 0.587112 3.4:-53133887 None:intergenic
GGAGGTAGTGGAACATGTGG+TGG 0.588460 3.4:-53133415 None:intergenic
GGACTCATACATATTGGTAT+CGG 0.594117 3.4:+53133748 MS.gene69607:CDS
TGTGGCAAAACTCCACCAGA+AGG 0.594689 3.4:+53133913 MS.gene69607:CDS
CACATAAGGTGGATGTACTG+GGG 0.597608 3.4:-53133128 None:intergenic
ACTGGTGGTTTAGGTACATA+GGG 0.604382 3.4:-53133259 None:intergenic
ACTGGTGGTTTAGGTACATA+GGG 0.604382 3.4:-53133331 None:intergenic
ACTGGTGGTGTCACAATTGG+AGG 0.619027 3.4:-53133589 None:intergenic
GGAGGTAGAGGAACATGTGG+TGG 0.622203 3.4:-53133502 None:intergenic
ATGAGAACCTGAAGAGCAAG+GGG 0.626266 3.4:-53133886 None:intergenic
TGTGGTGGGAAAACAATTGG+TGG 0.626847 3.4:-53133400 None:intergenic
GGCTTGGGTAAGGACAATAA+GGG 0.629172 3.4:-53132886 None:intergenic
GAGGTAGTGGAACATGTGGT+GGG 0.631936 3.4:-53133414 None:intergenic
GTGGCAAAACTCCACCAGAA+GGG 0.633657 3.4:+53133914 MS.gene69607:CDS
GTAGGTGGATAAGGTACAAG+TGG 0.636320 3.4:-53133658 None:intergenic
TCCAATTGTGACACCACCAG+TGG 0.639965 3.4:+53133591 MS.gene69607:CDS
GGGCACTTAAACCCTTCTGG+TGG 0.641808 3.4:-53133925 None:intergenic
GGTGTTACAGGGACAACTGG+TGG 0.641906 3.4:-53133274 None:intergenic
GGTGTTACAGGGACAACTGG+TGG 0.641906 3.4:-53133346 None:intergenic
GGCGGTGATGGTACAACTGG+AGG 0.645853 3.4:-53133433 None:intergenic
GGTGGATAAGGTACAAGTGG+TGG 0.651301 3.4:-53133655 None:intergenic
CTGGTGGCTTAACAATAGGA+GGG 0.675325 3.4:-53132928 None:intergenic
GGTGATGGGACATAAGGTGG+CGG 0.678831 3.4:-53133451 None:intergenic
GGTGGTGGTTGCACATAAGG+TGG 0.679674 3.4:-53133541 None:intergenic
GGACATGGTGTTTCACTAGG+TGG 0.681972 3.4:-53133628 None:intergenic
TAGGGTGGTCTCACAACAGG+TGG 0.682111 3.4:-53133241 None:intergenic
TAGGGTGGTCTCACAACAGG+TGG 0.682111 3.4:-53133313 None:intergenic
GGTGTTACAGGCACAACTGG+AGG 0.684392 3.4:-53133520 None:intergenic
GGTGGTGGTTTCACAACCGG+GGG 0.687563 3.4:-53133205 None:intergenic
ACATAAGGTGGATGTACTGG+GGG 0.689428 3.4:-53133127 None:intergenic
GGTGGCTTAGGGACATATGG+TGG 0.693700 3.4:-53133223 None:intergenic
GGTGGCTTAGGAACATAAGG+TGG 0.699096 3.4:-53133367 None:intergenic
ACTGGAGGTAGAGGAACATG+TGG 0.699937 3.4:-53133505 None:intergenic
GTTGGTGGTGTAACCACTGG+TGG 0.706491 3.4:-53133604 None:intergenic
GGTGGCTTAGGAACATAAGG+TGG 0.709677 3.4:-53133295 None:intergenic
GTGGCTTAACAATAGGAGGG+TGG 0.714929 3.4:-53132925 None:intergenic
GGTGGTTTAGGTACATAGGG+TGG 0.730445 3.4:-53133256 None:intergenic
GGTGGTTTAGGTACATAGGG+TGG 0.730445 3.4:-53133328 None:intergenic
ACTGGAGGTAGTGGAACATG+TGG 0.746997 3.4:-53133418 None:intergenic
TGAGAACCTGAAGAGCAAGG+GGG 0.789043 3.4:-53133885 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
! AAGAAGTTTAAGTCTAATAG+TGG - chr3.4:53133848-53133867 None:intergenic 25.0%
ACTATTGGAGGTTTAACAAT+TGG - chr3.4:53133163-53133182 None:intergenic 30.0%
ATTGGAGGTTTAACAATTGG+TGG - chr3.4:53133160-53133179 None:intergenic 35.0%
CAAGAGAAGGATGAAAACAT+TGG - chr3.4:53132834-53132853 None:intergenic 35.0%
GGACTCATACATATTGGTAT+CGG + chr3.4:53133748-53133767 MS.gene69607:CDS 35.0%
TTAGGAGTAGGAGAATACTT+TGG - chr3.4:53132965-53132984 None:intergenic 35.0%
! ACAATTGGTGGTTTCACAAT+TGG - chr3.4:53133391-53133410 None:intergenic 35.0%
! ACATGTGGTGGAAAAACAAT+TGG - chr3.4:53133493-53133512 None:intergenic 35.0%
!! GGTTTAACAATTGGTGGTTT+TGG - chr3.4:53133154-53133173 None:intergenic 35.0%
!! TCCATTGATGCTTTGAAGTT+GGG + chr3.4:53133703-53133722 MS.gene69607:CDS 35.0%
!! TTCCATTGATGCTTTGAAGT+TGG + chr3.4:53133702-53133721 MS.gene69607:CDS 35.0%
AACTGGTGGTTTAGGTACAT+AGG - chr3.4:53133263-53133282 None:intergenic 40.0%
AATGAGAACCTGAAGAGCAA+GGG - chr3.4:53133890-53133909 None:intergenic 40.0%
ACATGTTGTCCATTGCTTCA+AGG + chr3.4:53133787-53133806 MS.gene69607:CDS 40.0%
ACGTAAGGTGGATGTACTAT+TGG - chr3.4:53133178-53133197 None:intergenic 40.0%
ACTGGTGGTTTAGGTACATA+GGG - chr3.4:53133262-53133281 None:intergenic 40.0%
AGGTACTCAAGTTCAAGAGA+AGG - chr3.4:53132847-53132866 None:intergenic 40.0%
GATGGTTTAGGAGGATATCT+TGG - chr3.4:53133007-53133026 None:intergenic 40.0%
GCAAGCAAGAACATTGAGTA+AGG - chr3.4:53132867-53132886 None:intergenic 40.0%
GTTTCACAATTGGAGGTGAT+GGG - chr3.4:53133468-53133487 None:intergenic 40.0%
TAAGGTGGATGTACTATTGG+AGG - chr3.4:53133175-53133194 None:intergenic 40.0%
TCAACAAGTCCTTGAAGCAA+TGG - chr3.4:53133799-53133818 None:intergenic 40.0%
TGAACTGGTGGCTTAACAAT+AGG - chr3.4:53132935-53132954 None:intergenic 40.0%
! ACATGTGGTGGGAAAACAAT+TGG - chr3.4:53133406-53133425 None:intergenic 40.0%
! ACCCAACTTCAAAGCATCAA+TGG - chr3.4:53133707-53133726 None:intergenic 40.0%
! ATTGGTGGCTTAGGAACATA+AGG - chr3.4:53133373-53133392 None:intergenic 40.0%
! ATTGGTGGTTTCACAATTGG+AGG - chr3.4:53133388-53133407 None:intergenic 40.0%
! ATTGGTGGTTTCACAATTGG+TGG - chr3.4:53133388-53133407 None:intergenic 40.0%
! CTCATACATATTGGTATCGG+TGG + chr3.4:53133751-53133770 MS.gene69607:CDS 40.0%
! CTTCAGGTTCTCATTGATTG+TGG + chr3.4:53133895-53133914 MS.gene69607:CDS 40.0%
! TACTTTGGTGGTTTGTGAAC+TGG - chr3.4:53132950-53132969 None:intergenic 40.0%
! TATCTTGGTGGTTTGTGAAC+TGG - chr3.4:53132992-53133011 None:intergenic 40.0%
! TGTGGTGGAAAAACAATTGG+TGG - chr3.4:53133490-53133509 None:intergenic 40.0%
!! ATGGAACATGTTTGTTGTGC+TGG - chr3.4:53133688-53133707 None:intergenic 40.0%
!! CTTGGTGGACTCATACATAT+TGG + chr3.4:53133742-53133761 MS.gene69607:CDS 40.0%
!! GAACATAAGGTGGTGTTACA+GGG - chr3.4:53133288-53133307 None:intergenic 40.0%
!! GCTTCAAGGACTTGTTGATT+TGG + chr3.4:53133801-53133820 MS.gene69607:CDS 40.0%
!! TTTGGAACATGTGGTGGTTT+TGG - chr3.4:53133055-53133074 None:intergenic 40.0%
!!! ATTGGTGGTTTTGGCACATA+AGG - chr3.4:53133145-53133164 None:intergenic 40.0%
!!! GTGGTTTTGGTGTTGATGAT+GGG - chr3.4:53133042-53133061 None:intergenic 40.0%
!!! TGGTTTTGGTGTTGATGATG+GGG - chr3.4:53133041-53133060 None:intergenic 40.0%
ACAGGTGGCTTAGGAACATA+AGG - chr3.4:53133301-53133320 None:intergenic 45.0%
ACATAAGGTGGATGTACTGG+GGG - chr3.4:53133130-53133149 None:intergenic 45.0%
ACTGGTGGCTTAACAATAGG+AGG - chr3.4:53132932-53132951 None:intergenic 45.0%
ATGAGAACCTGAAGAGCAAG+GGG - chr3.4:53133889-53133908 None:intergenic 45.0%
CAATGAGAACCTGAAGAGCA+AGG - chr3.4:53133891-53133910 None:intergenic 45.0%
CACATAAGGTGGATGTACTG+GGG - chr3.4:53133131-53133150 None:intergenic 45.0%
CTGGTGGCTTAACAATAGGA+GGG - chr3.4:53132931-53132950 None:intergenic 45.0%
GCACATAAGGTGGATGTACT+GGG - chr3.4:53133132-53133151 None:intergenic 45.0%
GGAGTAGGAGAATACTTTGG+TGG - chr3.4:53132962-53132981 None:intergenic 45.0%
GGCTTGGGTAAGGACAATAA+GGG - chr3.4:53132889-53132908 None:intergenic 45.0%
GGTTTAGGAGGATATCTTGG+TGG - chr3.4:53133004-53133023 None:intergenic 45.0%
GGTTTCACAATTGGAGGTGA+TGG - chr3.4:53133469-53133488 None:intergenic 45.0%
GGTTTGTGAACTGGTGGTTT+AGG - chr3.4:53132983-53133002 None:intergenic 45.0%
GTAGGTGGATAAGGTACAAG+TGG - chr3.4:53133661-53133680 None:intergenic 45.0%
TGAACTGGTGGTTTAGGAGT+AGG - chr3.4:53132977-53132996 None:intergenic 45.0%
! ATAGGTGGTGGTTGCACATA+AGG - chr3.4:53133547-53133566 None:intergenic 45.0%
! GGTTTCACAATTGGTGGCTT+AGG - chr3.4:53133382-53133401 None:intergenic 45.0%
! TGTGGTGGGAAAACAATTGG+TGG - chr3.4:53133403-53133422 None:intergenic 45.0%
! TTGGGATGATGAGGAGGTTT+TGG - chr3.4:53133073-53133092 None:intergenic 45.0%
! TTTGGTGGTTTGTGAACTGG+TGG - chr3.4:53132947-53132966 None:intergenic 45.0%
!! ACAATTGGAGGTGTTGGTGT+TGG - chr3.4:53133580-53133599 None:intergenic 45.0%
!! ATTGGAGGTGATGGGACATA+AGG - chr3.4:53133460-53133479 None:intergenic 45.0%
!! GAACATGTTTGTTGTGCTGG+TGG - chr3.4:53133685-53133704 None:intergenic 45.0%
!! GGAACATAAGGTGGTGTTAC+AGG - chr3.4:53133289-53133308 None:intergenic 45.0%
!! GGTGTTGGTGGTGTTACAAT+AGG - chr3.4:53133565-53133584 None:intergenic 45.0%
!! GTTGGTGGTGTTACAATAGG+TGG - chr3.4:53133562-53133581 None:intergenic 45.0%
!! TATGGTGGTGGTTTCACAAC+CGG - chr3.4:53133211-53133230 None:intergenic 45.0%
!! TGCACATAAGGTGGTGTTAC+AGG - chr3.4:53133535-53133554 None:intergenic 45.0%
!!! GGTGGTTTTGGTGTTGATGA+TGG - chr3.4:53133043-53133062 None:intergenic 45.0%
!!! GGTTTTGGTGTTGATGATGG+GGG - chr3.4:53133040-53133059 None:intergenic 45.0%
!!! TGAGGAGGTTTTGGAACATG+TGG - chr3.4:53133064-53133083 None:intergenic 45.0%
ACAATAGGAGGGTGGTGTGT+TGG - chr3.4:53132920-53132939 None:intergenic 50.0%
ACAGGGACAACTGGTGGTTT+AGG - chr3.4:53133271-53133290 None:intergenic 50.0%
ACAGGTGGCTTAGGGACATA+TGG - chr3.4:53133229-53133248 None:intergenic 50.0%
ACATAGGGTGGTCTCACAAC+AGG - chr3.4:53133247-53133266 None:intergenic 50.0%
ACCTTACGTACCAAAACCCC+CGG + chr3.4:53133189-53133208 MS.gene69607:CDS 50.0%
ACTGGAGGTAGAGGAACATG+TGG - chr3.4:53133508-53133527 None:intergenic 50.0%
GATGGTACAACTGGAGGTAG+TGG - chr3.4:53133430-53133449 None:intergenic 50.0%
GGACATGGTGTTTCACTAGG+TGG - chr3.4:53133631-53133650 None:intergenic 50.0%
GGAGGACATGGTGTTTCACT+AGG - chr3.4:53133634-53133653 None:intergenic 50.0%
GGATAAGGTACAAGTGGTGG+TGG - chr3.4:53133655-53133674 None:intergenic 50.0%
GGCACATAAGGTGGATGTAC+TGG - chr3.4:53133133-53133152 None:intergenic 50.0%
GGGCTTGGGTAAGGACAATA+AGG - chr3.4:53132890-53132909 None:intergenic 50.0%
GGTGGATAAGGTACAAGTGG+TGG - chr3.4:53133658-53133677 None:intergenic 50.0%
GGTGGCTTAGGAACATAAGG+TGG - chr3.4:53133298-53133317 None:intergenic 50.0%
GGTGGTTTAGGTACATAGGG+TGG - chr3.4:53133259-53133278 None:intergenic 50.0%
GGTGTTTCACTAGGTGGTGT+TGG - chr3.4:53133625-53133644 None:intergenic 50.0%
GTCTCACAACAGGTGGCTTA+GGG - chr3.4:53133237-53133256 None:intergenic 50.0%
GTGGCAAAACTCCACCAGAA+GGG + chr3.4:53133914-53133933 MS.gene69607:CDS 50.0%
GTGGCTTAACAATAGGAGGG+TGG - chr3.4:53132928-53132947 None:intergenic 50.0%
TCCAATTGTGACACCACCAG+TGG + chr3.4:53133591-53133610 MS.gene69607:CDS 50.0%
TGAGAACCTGAAGAGCAAGG+GGG - chr3.4:53133888-53133907 None:intergenic 50.0%
TGTGGCAAAACTCCACCAGA+AGG + chr3.4:53133913-53133932 MS.gene69607:CDS 50.0%
TGTTATCCCCCTTGCTCTTC+AGG + chr3.4:53133879-53133898 MS.gene69607:CDS 50.0%
! CTTGGTGGTTTGTGAACTGG+TGG - chr3.4:53132989-53133008 None:intergenic 50.0%
! GCATGTGTTGATGTGCTTGG+TGG + chr3.4:53133727-53133746 MS.gene69607:CDS 50.0%
! GGACAAGGTGATGGTTTAGG+AGG - chr3.4:53133016-53133035 None:intergenic 50.0%
! GGTGCATGTGTTGATGTGCT+TGG + chr3.4:53133724-53133743 MS.gene69607:CDS 50.0%
! GGTGGACAAGGTGATGGTTT+AGG - chr3.4:53133019-53133038 None:intergenic 50.0%
! GGTGTCACAATTGGAGGTGT+TGG - chr3.4:53133586-53133605 None:intergenic 50.0%
! GTTTCACTAGGTGGTGTTGG+TGG - chr3.4:53133622-53133641 None:intergenic 50.0%
!! ACCACTGGTGGTGTCACAAT+TGG - chr3.4:53133595-53133614 None:intergenic 50.0%
!! ACTGGAGGTAGTGGAACATG+TGG - chr3.4:53133421-53133440 None:intergenic 50.0%
!! ACTGGTGGTGTCACAATTGG+AGG - chr3.4:53133592-53133611 None:intergenic 50.0%
!! ATGGTGGTGGTTTCACAACC+GGG - chr3.4:53133210-53133229 None:intergenic 50.0%
!! ATTGGAGGTGTTGGTGTTGG+TGG - chr3.4:53133577-53133596 None:intergenic 50.0%
!! GAGGTAGTGGAACATGTGGT+GGG - chr3.4:53133417-53133436 None:intergenic 50.0%
!! GGTGGTGTGTTGGTGGTTTA+GGG - chr3.4:53132910-53132929 None:intergenic 50.0%
!! GGTGGTGTTACAATAGGTGG+TGG - chr3.4:53133559-53133578 None:intergenic 50.0%
!! GTGTTGGTGGTTTAGGGCTT+GGG - chr3.4:53132904-53132923 None:intergenic 50.0%
!! GTTTGTTGTGCTGGTGGTGT+AGG - chr3.4:53133679-53133698 None:intergenic 50.0%
!! TAAGGTACAAGTGGTGGTGG+AGG - chr3.4:53133652-53133671 None:intergenic 50.0%
!! TGTGTTGGTGGTTTAGGGCT+TGG - chr3.4:53132905-53132924 None:intergenic 50.0%
!! TTTGGTGTTGATGATGGGGG+TGG - chr3.4:53133037-53133056 None:intergenic 50.0%
!!! ACTGGGGGTTTTGGAACATG+TGG - chr3.4:53133115-53133134 None:intergenic 50.0%
!!! GGAGGTTTTGGAACATGTGG+TGG - chr3.4:53133061-53133080 None:intergenic 50.0%
!!! GGGGTTTTGGAACATGTGGT+GGG - chr3.4:53133111-53133130 None:intergenic 50.0%
!!! GGTGGTTTTGGCACATAAGG+TGG - chr3.4:53133142-53133161 None:intergenic 50.0%
ACAGGCACAACTGGAGGTAG+AGG - chr3.4:53133517-53133536 None:intergenic 55.0%
ATAGGAGGGTGGTGTGTTGG+TGG - chr3.4:53132917-53132936 None:intergenic 55.0%
GCTGGGCACTTAAACCCTTC+TGG - chr3.4:53133931-53133950 None:intergenic 55.0%
GGAGGTAGAGGAACATGTGG+TGG - chr3.4:53133505-53133524 None:intergenic 55.0%
GGCTTAGGGACATATGGTGG+TGG - chr3.4:53133223-53133242 None:intergenic 55.0%
GGGCACTTAAACCCTTCTGG+TGG - chr3.4:53133928-53133947 None:intergenic 55.0%
GGTCTCACAACAGGTGGCTT+AGG - chr3.4:53133238-53133257 None:intergenic 55.0%
GGTGGCTTAGGGACATATGG+TGG - chr3.4:53133226-53133245 None:intergenic 55.0%
TAGGGTGGTCTCACAACAGG+TGG - chr3.4:53133244-53133263 None:intergenic 55.0%
! ACTGGGGGTTTGGGATGATG+AGG - chr3.4:53133082-53133101 None:intergenic 55.0%
! GCTGGTGGTGTAGGTGGATA+AGG - chr3.4:53133670-53133689 None:intergenic 55.0%
! GGTGGATGTACTGGGGGTTT+TGG - chr3.4:53133124-53133143 None:intergenic 55.0%
! GGTGGTGGTTGCACATAAGG+TGG - chr3.4:53133544-53133563 None:intergenic 55.0%
! GGTGGTTTAGGGCTTGGGTA+AGG - chr3.4:53132899-53132918 None:intergenic 55.0%
! GGTGTTACAGGCACAACTGG+AGG - chr3.4:53133523-53133542 None:intergenic 55.0%
! GGTGTTACAGGGACAACTGG+TGG - chr3.4:53133277-53133296 None:intergenic 55.0%
! GGTTTCACAACCGGGGGTTT+TGG - chr3.4:53133202-53133221 None:intergenic 55.0%
! TGTTGTGCTGGTGGTGTAGG+TGG - chr3.4:53133676-53133695 None:intergenic 55.0%
!! ACAAGTGGTGGTGGAGGACA+TGG - chr3.4:53133646-53133665 None:intergenic 55.0%
!! ACATGTGGTGGGTGCACTAC+TGG - chr3.4:53133100-53133119 None:intergenic 55.0%
!! ACCGGGGGTTTTGGTACGTA+AGG - chr3.4:53133193-53133212 None:intergenic 55.0%
!! ATGTGGTGGGTGCACTACTG+GGG - chr3.4:53133098-53133117 None:intergenic 55.0%
!! CATGTGGTGGGTGCACTACT+GGG - chr3.4:53133099-53133118 None:intergenic 55.0%
!! GGAGGTAGTGGAACATGTGG+TGG - chr3.4:53133418-53133437 None:intergenic 55.0%
!! GGAGGTGATGGGACATAAGG+TGG - chr3.4:53133457-53133476 None:intergenic 55.0%
!! GGGGGTTTTGGTACGTAAGG+TGG - chr3.4:53133190-53133209 None:intergenic 55.0%
!! GGGTGGTGTGTTGGTGGTTT+AGG - chr3.4:53132911-53132930 None:intergenic 55.0%
!! GGTGATGGGACATAAGGTGG+CGG - chr3.4:53133454-53133473 None:intergenic 55.0%
!! GGTGGTGTTACAGGCACAAC+TGG - chr3.4:53133526-53133545 None:intergenic 55.0%
!! GGTGGTGTTACAGGGACAAC+TGG - chr3.4:53133280-53133299 None:intergenic 55.0%
!! GGTGTTGGTGGTGTAACCAC+TGG - chr3.4:53133610-53133629 None:intergenic 55.0%
!! GTTGATGATGGGGGTGGACA+AGG - chr3.4:53133031-53133050 None:intergenic 55.0%
!! GTTGGTGGTGTAACCACTGG+TGG - chr3.4:53133607-53133626 None:intergenic 55.0%
!! TGGTGGTGGTTTCACAACCG+GGG - chr3.4:53133209-53133228 None:intergenic 55.0%
!!! GGGGGTTTTGGAACATGTGG+TGG - chr3.4:53133112-53133131 None:intergenic 55.0%
GATGGGGGTGGACAAGGTGA+TGG - chr3.4:53133025-53133044 None:intergenic 60.0%
GGGTGCACTACTGGGGGTTT+GGG - chr3.4:53133091-53133110 None:intergenic 60.0%
TGGGTGCACTACTGGGGGTT+TGG - chr3.4:53133092-53133111 None:intergenic 60.0%
! GGCGGTGATGGTACAACTGG+AGG - chr3.4:53133436-53133455 None:intergenic 60.0%
! GGGACATAAGGTGGCGGTGA+TGG - chr3.4:53133448-53133467 None:intergenic 60.0%
! GGGGGTTTGGGATGATGAGG+AGG - chr3.4:53133079-53133098 None:intergenic 60.0%
! GGTGGCGGTGATGGTACAAC+TGG - chr3.4:53133439-53133458 None:intergenic 60.0%
! GGTGGTGGTTTCACAACCGG+GGG - chr3.4:53133208-53133227 None:intergenic 60.0%
!! TGTGGTGGGTGCACTACTGG+GGG - chr3.4:53133097-53133116 None:intergenic 60.0%


Chromosome Type Strat End Strand Name
chr3.4 gene 53132812 53133957 53132812 ID=MS.gene69607
chr3.4 mRNA 53132812 53133957 53132812 ID=MS.gene69607.t1;Parent=MS.gene69607
chr3.4 exon 53132812 53133957 53132812 ID=MS.gene69607.t1.exon1;Parent=MS.gene69607.t1
chr3.4 CDS 53132812 53133957 53132812 ID=cds.MS.gene69607.t1;Parent=MS.gene69607.t1
Gene Sequence

>MS.gene69607

ATGGCTAACTATGCTCTAGCCAATGTTTTCATCCTTCTCTTGAACTTGAGTACCTTACTCAATGTTCTTGCTTGCCCTTATTGTCCTTACCCAAGCCCTAAACCACCAACACACCACCCTCCTATTGTTAAGCCACCAGTTCACAAACCACCAAAGTATTCTCCTACTCCTAAACCACCAGTTCACAAACCACCAAGATATCCTCCTAAACCATCACCTTGTCCACCCCCATCATCAACACCAAAACCACCACATGTTCCAAAACCTCCTCATCATCCCAAACCCCCAGTAGTGCACCCACCACATGTTCCAAAACCCCCAGTACATCCACCTTATGTGCCAAAACCACCAATTGTTAAACCTCCAATAGTACATCCACCTTACGTACCAAAACCCCCGGTTGTGAAACCACCACCATATGTCCCTAAGCCACCTGTTGTGAGACCACCCTATGTACCTAAACCACCAGTTGTCCCTGTAACACCACCTTATGTTCCTAAGCCACCTGTTGTGAGACCACCCTATGTACCTAAACCACCAGTTGTCCCTGTAACACCACCTTATGTTCCTAAGCCACCAATTGTGAAACCACCAATTGTTTTCCCACCACATGTTCCACTACCTCCAGTTGTACCATCACCGCCACCTTATGTCCCATCACCTCCAATTGTGAAACCACCAATTGTTTTTCCACCACATGTTCCTCTACCTCCAGTTGTGCCTGTAACACCACCTTATGTGCAACCACCACCTATTGTAACACCACCAACACCAACACCTCCAATTGTGACACCACCAGTGGTTACACCACCAACACCACCTAGTGAAACACCATGTCCTCCACCACCACTTGTACCTTATCCACCTACACCACCAGCACAACAAACATGTTCCATTGATGCTTTGAAGTTGGGTGCATGTGTTGATGTGCTTGGTGGACTCATACATATTGGTATCGGTGGAAGTGCTAAACAAACATGTTGTCCATTGCTTCAAGGACTTGTTGATTTGGATGCAGCTATATGTCTCTGCACCACTATTAGACTTAAACTTCTTAATATCAATCTTGTTATCCCCCTTGCTCTTCAGGTTCTCATTGATTGTGGCAAAACTCCACCAGAAGGGTTTAAGTGCCCAGCTTATTAA

Protein sequence

>MS.gene69607.t1

MANYALANVFILLLNLSTLLNVLACPYCPYPSPKPPTHHPPIVKPPVHKPPKYSPTPKPPVHKPPRYPPKPSPCPPPSSTPKPPHVPKPPHHPKPPVVHPPHVPKPPVHPPYVPKPPIVKPPIVHPPYVPKPPVVKPPPYVPKPPVVRPPYVPKPPVVPVTPPYVPKPPVVRPPYVPKPPVVPVTPPYVPKPPIVKPPIVFPPHVPLPPVVPSPPPYVPSPPIVKPPIVFPPHVPLPPVVPVTPPYVQPPPIVTPPTPTPPIVTPPVVTPPTPPSETPCPPPPLVPYPPTPPAQQTCSIDALKLGACVDVLGGLIHIGIGGSAKQTCCPLLQGLVDLDAAICLCTTIRLKLLNINLVIPLALQVLIDCGKTPPEGFKCPAY