Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene70601.t1 | XP_013461030.1 | 93.3 | 225 | 14 | 1 | 1 | 225 | 1 | 224 | 1.70E-116 | 428.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene70601.t1 | Q8W485 | 59.4 | 202 | 74 | 2 | 25 | 225 | 20 | 214 | 1.3e-64 | 247.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene70601.t1 | A0A072UZ36 | 93.3 | 225 | 14 | 1 | 1 | 225 | 1 | 224 | 1.2e-116 | 428.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049171 | MS.gene70601 | 0.834833 | 2.38E-56 | -1.69E-46 |
| MS.gene049257 | MS.gene70601 | 0.839916 | 1.19E-57 | -1.69E-46 |
| MS.gene049609 | MS.gene70601 | 0.800883 | 1.17E-48 | -1.69E-46 |
| MS.gene049633 | MS.gene70601 | 0.821194 | 4.60E-53 | -1.69E-46 |
| MS.gene050170 | MS.gene70601 | 0.876423 | 1.41E-68 | -1.69E-46 |
| MS.gene050323 | MS.gene70601 | 0.843667 | 1.22E-58 | -1.69E-46 |
| MS.gene050496 | MS.gene70601 | 0.80074 | 1.25E-48 | -1.69E-46 |
| MS.gene050553 | MS.gene70601 | 0.816253 | 6.08E-52 | -1.69E-46 |
| MS.gene050577 | MS.gene70601 | 0.814593 | 1.42E-51 | -1.69E-46 |
| MS.gene050697 | MS.gene70601 | 0.805629 | 1.22E-49 | -1.69E-46 |
| MS.gene050747 | MS.gene70601 | 0.830098 | 3.56E-55 | -1.69E-46 |
| MS.gene05080 | MS.gene70601 | 0.821045 | 4.97E-53 | -1.69E-46 |
| MS.gene05081 | MS.gene70601 | 0.867666 | 1.16E-65 | -1.69E-46 |
| MS.gene050868 | MS.gene70601 | 0.835689 | 1.45E-56 | -1.69E-46 |
| MS.gene050871 | MS.gene70601 | 0.838358 | 3.02E-57 | -1.69E-46 |
| MS.gene050875 | MS.gene70601 | -0.801867 | 7.35E-49 | -1.69E-46 |
| MS.gene050904 | MS.gene70601 | 0.813766 | 2.17E-51 | -1.69E-46 |
| MS.gene050950 | MS.gene70601 | 0.829426 | 5.18E-55 | -1.69E-46 |
| MS.gene051268 | MS.gene70601 | 0.807463 | 4.99E-50 | -1.69E-46 |
| MS.gene051317 | MS.gene70601 | 0.808039 | 3.77E-50 | -1.69E-46 |
| MS.gene051525 | MS.gene70601 | 0.805265 | 1.45E-49 | -1.69E-46 |
| MS.gene051552 | MS.gene70601 | -0.8241 | 9.69E-54 | -1.69E-46 |
| MS.gene051734 | MS.gene70601 | 0.819535 | 1.10E-52 | -1.69E-46 |
| MS.gene051838 | MS.gene70601 | 0.877167 | 7.81E-69 | -1.69E-46 |
| MS.gene051874 | MS.gene70601 | 0.810723 | 1.00E-50 | -1.69E-46 |
| MS.gene051941 | MS.gene70601 | 0.848332 | 6.56E-60 | -1.69E-46 |
| MS.gene052100 | MS.gene70601 | 0.80256 | 5.29E-49 | -1.69E-46 |
| MS.gene052346 | MS.gene70601 | 0.814349 | 1.61E-51 | -1.69E-46 |
| MS.gene052414 | MS.gene70601 | 0.817309 | 3.53E-52 | -1.69E-46 |
| MS.gene052501 | MS.gene70601 | 0.839104 | 1.93E-57 | -1.69E-46 |
| MS.gene052503 | MS.gene70601 | 0.851081 | 1.12E-60 | -1.69E-46 |
| MS.gene052505 | MS.gene70601 | 0.826253 | 3.00E-54 | -1.69E-46 |
| MS.gene052506 | MS.gene70601 | 0.805389 | 1.37E-49 | -1.69E-46 |
| MS.gene052615 | MS.gene70601 | 0.80075 | 1.25E-48 | -1.69E-46 |
| MS.gene052823 | MS.gene70601 | 0.854219 | 1.42E-61 | -1.69E-46 |
| MS.gene052825 | MS.gene70601 | 0.856935 | 2.30E-62 | -1.69E-46 |
| MS.gene052870 | MS.gene70601 | 0.809822 | 1.56E-50 | -1.69E-46 |
| MS.gene052872 | MS.gene70601 | 0.822219 | 2.66E-53 | -1.69E-46 |
| MS.gene052966 | MS.gene70601 | 0.80989 | 1.51E-50 | -1.69E-46 |
| MS.gene053203 | MS.gene70601 | 0.820899 | 5.37E-53 | -1.69E-46 |
| MS.gene053479 | MS.gene70601 | 0.864776 | 9.53E-65 | -1.69E-46 |
| MS.gene053480 | MS.gene70601 | 0.844966 | 5.45E-59 | -1.69E-46 |
| MS.gene053574 | MS.gene70601 | 0.802369 | 5.80E-49 | -1.69E-46 |
| MS.gene053626 | MS.gene70601 | 0.805047 | 1.61E-49 | -1.69E-46 |
| MS.gene053824 | MS.gene70601 | 0.86 | 2.80E-63 | -1.69E-46 |
| MS.gene054107 | MS.gene70601 | 0.834576 | 2.77E-56 | -1.69E-46 |
| MS.gene054343 | MS.gene70601 | 0.806019 | 1.01E-49 | -1.69E-46 |
| MS.gene054344 | MS.gene70601 | 0.823948 | 1.05E-53 | -1.69E-46 |
| MS.gene054408 | MS.gene70601 | 0.80878 | 2.62E-50 | -1.69E-46 |
| MS.gene054595 | MS.gene70601 | 0.808641 | 2.80E-50 | -1.69E-46 |
| MS.gene05470 | MS.gene70601 | 0.830957 | 2.19E-55 | -1.69E-46 |
| MS.gene054884 | MS.gene70601 | -0.832104 | 1.14E-55 | -1.69E-46 |
| MS.gene05494 | MS.gene70601 | 0.822204 | 2.68E-53 | -1.69E-46 |
| MS.gene055159 | MS.gene70601 | -0.802751 | 4.84E-49 | -1.69E-46 |
| MS.gene055224 | MS.gene70601 | 0.838581 | 2.64E-57 | -1.69E-46 |
| MS.gene055502 | MS.gene70601 | 0.810125 | 1.35E-50 | -1.69E-46 |
| MS.gene055539 | MS.gene70601 | 0.836433 | 9.38E-57 | -1.69E-46 |
| MS.gene055577 | MS.gene70601 | 0.811114 | 8.23E-51 | -1.69E-46 |
| MS.gene055741 | MS.gene70601 | 0.86163 | 8.96E-64 | -1.69E-46 |
| MS.gene055744 | MS.gene70601 | 0.85914 | 5.08E-63 | -1.69E-46 |
| MS.gene055748 | MS.gene70601 | 0.815676 | 8.18E-52 | -1.69E-46 |
| MS.gene055750 | MS.gene70601 | 0.803811 | 2.92E-49 | -1.69E-46 |
| MS.gene055751 | MS.gene70601 | 0.802566 | 5.28E-49 | -1.69E-46 |
| MS.gene05589 | MS.gene70601 | 0.861651 | 8.83E-64 | -1.69E-46 |
| MS.gene055941 | MS.gene70601 | 0.8095 | 1.84E-50 | -1.69E-46 |
| MS.gene056040 | MS.gene70601 | 0.810957 | 8.90E-51 | -1.69E-46 |
| MS.gene056166 | MS.gene70601 | 0.846414 | 2.20E-59 | -1.69E-46 |
| MS.gene056387 | MS.gene70601 | 0.85178 | 7.10E-61 | -1.69E-46 |
| MS.gene056504 | MS.gene70601 | 0.824452 | 8.01E-54 | -1.69E-46 |
| MS.gene056508 | MS.gene70601 | 0.803611 | 3.21E-49 | -1.69E-46 |
| MS.gene056694 | MS.gene70601 | -0.807612 | 4.64E-50 | -1.69E-46 |
| MS.gene056697 | MS.gene70601 | -0.810869 | 9.30E-51 | -1.69E-46 |
| MS.gene056877 | MS.gene70601 | 0.851714 | 7.42E-61 | -1.69E-46 |
| MS.gene057019 | MS.gene70601 | 0.849014 | 4.24E-60 | -1.69E-46 |
| MS.gene057076 | MS.gene70601 | 0.806224 | 9.13E-50 | -1.69E-46 |
| MS.gene057086 | MS.gene70601 | 0.809042 | 2.30E-50 | -1.69E-46 |
| MS.gene057332 | MS.gene70601 | 0.827626 | 1.41E-54 | -1.69E-46 |
| MS.gene057658 | MS.gene70601 | 0.833556 | 4.98E-56 | -1.69E-46 |
| MS.gene057831 | MS.gene70601 | 0.818038 | 2.42E-52 | -1.69E-46 |
| MS.gene057856 | MS.gene70601 | 0.806016 | 1.01E-49 | -1.69E-46 |
| MS.gene05787 | MS.gene70601 | 0.816424 | 5.57E-52 | -1.69E-46 |
| MS.gene058338 | MS.gene70601 | 0.827483 | 1.53E-54 | -1.69E-46 |
| MS.gene05837 | MS.gene70601 | 0.83797 | 3.80E-57 | -1.69E-46 |
| MS.gene058418 | MS.gene70601 | -0.848488 | 5.94E-60 | -1.69E-46 |
| MS.gene058444 | MS.gene70601 | 0.839109 | 1.93E-57 | -1.69E-46 |
| MS.gene058544 | MS.gene70601 | 0.805557 | 1.26E-49 | -1.69E-46 |
| MS.gene058700 | MS.gene70601 | 0.803888 | 2.81E-49 | -1.69E-46 |
| MS.gene058838 | MS.gene70601 | 0.843892 | 1.06E-58 | -1.69E-46 |
| MS.gene059023 | MS.gene70601 | 0.865484 | 5.71E-65 | -1.69E-46 |
| MS.gene05914 | MS.gene70601 | 0.829902 | 3.97E-55 | -1.69E-46 |
| MS.gene059303 | MS.gene70601 | 0.819528 | 1.11E-52 | -1.69E-46 |
| MS.gene059667 | MS.gene70601 | 0.84251 | 2.47E-58 | -1.69E-46 |
| MS.gene059717 | MS.gene70601 | 0.827003 | 1.99E-54 | -1.69E-46 |
| MS.gene059756 | MS.gene70601 | 0.802838 | 4.64E-49 | -1.69E-46 |
| MS.gene06000 | MS.gene70601 | 0.870663 | 1.23E-66 | -1.69E-46 |
| MS.gene06027 | MS.gene70601 | 0.835235 | 1.89E-56 | -1.69E-46 |
| MS.gene060372 | MS.gene70601 | 0.814507 | 1.49E-51 | -1.69E-46 |
| MS.gene060762 | MS.gene70601 | 0.802929 | 4.44E-49 | -1.69E-46 |
| MS.gene060778 | MS.gene70601 | 0.802265 | 6.09E-49 | -1.69E-46 |
| MS.gene06077 | MS.gene70601 | 0.810249 | 1.27E-50 | -1.69E-46 |
| MS.gene060835 | MS.gene70601 | 0.801554 | 8.52E-49 | -1.69E-46 |
| MS.gene06092 | MS.gene70601 | 0.80415 | 2.48E-49 | -1.69E-46 |
| MS.gene06097 | MS.gene70601 | 0.810907 | 9.13E-51 | -1.69E-46 |
| MS.gene060982 | MS.gene70601 | 0.842801 | 2.07E-58 | -1.69E-46 |
| MS.gene061231 | MS.gene70601 | 0.807239 | 5.57E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene70601.t1 | MTR_3g078320 | 93.333 | 225 | 14 | 1 | 1 | 225 | 1 | 224 | 5.22e-157 | 434 |
| MS.gene70601.t1 | MTR_3g078320 | 87.047 | 193 | 17 | 2 | 1 | 193 | 1 | 185 | 3.92e-120 | 339 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene70601.t1 | AT5G50100 | 59.406 | 202 | 74 | 2 | 25 | 225 | 20 | 214 | 6.23e-84 | 249 |
Find 42 sgRNAs with CRISPR-Local
Find 166 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAATACCGTCTTCAAGTTAC+AGG | 0.354145 | 3.1:+64262035 | MS.gene70601:CDS |
| TTACTCTCCCGACGAGAATC+AGG | 0.359294 | 3.1:+64261003 | MS.gene70601:CDS |
| CGCCATTACAAAATATGAAC+CGG | 0.360782 | 3.1:+64261859 | MS.gene70601:CDS |
| GAGTGGTGATGATGGGTTAT+GGG | 0.375099 | 3.1:-64260189 | None:intergenic |
| GCCTATATCAACAAACTTGA+TGG | 0.376854 | 3.1:-64260972 | None:intergenic |
| ACCATCAAGTTTGTTGATAT+AGG | 0.406883 | 3.1:+64260971 | MS.gene70601:CDS |
| TGTACCTCTCGCATGCATAA+TGG | 0.408229 | 3.1:-64260769 | None:intergenic |
| GGGATACCGGGTTTGAGAAT+AGG | 0.422503 | 3.1:-64260287 | None:intergenic |
| AGAGTGGTGATGATGGGTTA+TGG | 0.434759 | 3.1:-64260190 | None:intergenic |
| TGAACAAGTTGGTCTTGGTT+GGG | 0.442711 | 3.1:+64261832 | MS.gene70601:CDS |
| GAGAACAGTCTCCTAAAGAT+TGG | 0.446474 | 3.1:+64260716 | MS.gene70601:CDS |
| TGGAATTTAAGATTGTGAAA+TGG | 0.448918 | 3.1:-64260221 | None:intergenic |
| ATGAACAAGTTGGTCTTGGT+TGG | 0.452022 | 3.1:+64261831 | MS.gene70601:CDS |
| TTATATGAACAAGTTGGTCT+TGG | 0.455211 | 3.1:+64261827 | MS.gene70601:CDS |
| TCTAATATTTCTTCGATAGG+TGG | 0.501456 | 3.1:-64262568 | None:intergenic |
| AAGATTAAAATGCTATATGA+TGG | 0.504605 | 3.1:+64260739 | MS.gene70601:CDS |
| CGAGAGAAGAACAAGAGTTA+TGG | 0.512046 | 3.1:+64260947 | MS.gene70601:CDS |
| ATTCATGCTATTCTATCAGA+TGG | 0.517070 | 3.1:+64261328 | MS.gene70601:CDS |
| ATTAGAAGCTCGAAGAAAGA+AGG | 0.528275 | 3.1:+64262585 | MS.gene70601:CDS |
| GCTTCTAATATTTCTTCGAT+AGG | 0.530257 | 3.1:-64262571 | None:intergenic |
| GTGAAAGATGAGGACGGAGA+TGG | 0.540320 | 3.1:-64260241 | None:intergenic |
| AGGAGATTATATGAACAAGT+TGG | 0.546603 | 3.1:+64261821 | MS.gene70601:CDS |
| GGTGAAAAGAGTGGTGATGA+TGG | 0.546710 | 3.1:-64260197 | None:intergenic |
| TCGAGGCCCTGATTCTCGTC+GGG | 0.546724 | 3.1:-64261010 | None:intergenic |
| GGTTTGAGAATAGGAAGTGT+TGG | 0.554588 | 3.1:-64260278 | None:intergenic |
| TACAATTTCTAAGAAAGAAG+AGG | 0.573127 | 3.1:+64260690 | MS.gene70601:CDS |
| GTCGAGGCCCTGATTCTCGT+CGG | 0.574141 | 3.1:-64261011 | None:intergenic |
| AGTGGTGATGATGGGTTATG+GGG | 0.578389 | 3.1:-64260188 | None:intergenic |
| TACTCTCCCGACGAGAATCA+GGG | 0.588982 | 3.1:+64261004 | MS.gene70601:CDS |
| AATTTCTAAGAAAGAAGAGG+AGG | 0.606166 | 3.1:+64260693 | MS.gene70601:CDS |
| ATTTCTAAGAAAGAAGAGGA+GGG | 0.607445 | 3.1:+64260694 | MS.gene70601:CDS |
| AAGAAGCCATACTTCGACAT+CGG | 0.610113 | 3.1:-64261362 | None:intergenic |
| ATTTACCTGTAACTTGAAGA+CGG | 0.611328 | 3.1:-64262040 | None:intergenic |
| GTGAAAAGAGTGGTGATGAT+GGG | 0.613615 | 3.1:-64260196 | None:intergenic |
| AGGAAGTGTTGGAAAAGCAT+CGG | 0.623406 | 3.1:-64260267 | None:intergenic |
| GACTAACAGTTTGATAGTCG+AGG | 0.648679 | 3.1:-64261027 | None:intergenic |
| AATTTAAGATTGTGAAATGG+AGG | 0.655857 | 3.1:-64260218 | None:intergenic |
| GCATCGGCGTGTGAAAGATG+AGG | 0.663047 | 3.1:-64260251 | None:intergenic |
| CGGCGTGTGAAAGATGAGGA+CGG | 0.668499 | 3.1:-64260247 | None:intergenic |
| TTGTCCATTATGCATGCGAG+AGG | 0.675961 | 3.1:+64260765 | MS.gene70601:CDS |
| ACACTTCCTATTCTCAAACC+CGG | 0.690891 | 3.1:+64260281 | MS.gene70601:CDS |
| TGAAATGGAGGTGAAAAGAG+TGG | 0.691751 | 3.1:-64260206 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAATATGGTATACATTATT+AGG | + | chr3.1:64262976-64262995 | MS.gene70601:intron | 15.0% |
| !! | AGTATAATTAATTATTAACG+TGG | + | chr3.1:64262334-64262353 | MS.gene70601:intron | 15.0% |
| !! | ATTCTATAAAAATTTGAACA+TGG | - | chr3.1:64261468-64261487 | None:intergenic | 15.0% |
| !! | CAATTAAAGCATAAATTAAA+AGG | - | chr3.1:64262437-64262456 | None:intergenic | 15.0% |
| !!! | AAAGCTGATTTATTTATTTT+TGG | + | chr3.1:64261065-64261084 | MS.gene70601:intron | 15.0% |
| !!! | TGTTTTTGTTTATTATAGAT+GGG | - | chr3.1:64262891-64262910 | None:intergenic | 15.0% |
| !! | AAGATTAAAATGCTATATGA+TGG | + | chr3.1:64260739-64260758 | MS.gene70601:CDS | 20.0% |
| !! | ATAATTAATTATTAACGTGG+CGG | + | chr3.1:64262337-64262356 | MS.gene70601:intron | 20.0% |
| !! | ATATCCAGATAATGATATTA+AGG | - | chr3.1:64261422-64261441 | None:intergenic | 20.0% |
| !! | ATTAATAACATAATGAACCA+AGG | - | chr3.1:64261955-64261974 | None:intergenic | 20.0% |
| !! | CAATGAAAATTTAACACAAA+AGG | + | chr3.1:64262685-64262704 | MS.gene70601:intron | 20.0% |
| !! | GTAAAAATAGAATTTCATAC+TGG | - | chr3.1:64261790-64261809 | None:intergenic | 20.0% |
| !! | TATACTAATATTTCTTCGAT+AGG | - | chr3.1:64262486-64262505 | None:intergenic | 20.0% |
| !! | TATCCAGATAATGATATTAA+GGG | - | chr3.1:64261421-64261440 | None:intergenic | 20.0% |
| !! | TATTGTAATTGTTCTTTCTA+TGG | + | chr3.1:64262111-64262130 | MS.gene70601:intron | 20.0% |
| !! | TATTTATATCTAACTCTTAC+TGG | - | chr3.1:64261584-64261603 | None:intergenic | 20.0% |
| !! | TTAAACAATATTCACAGATT+GGG | + | chr3.1:64261979-64261998 | MS.gene70601:intron | 20.0% |
| !! | TTACAATATTACTTACTACA+TGG | - | chr3.1:64262099-64262118 | None:intergenic | 20.0% |
| !! | TTGGTTCATTATGTTATTAA+TGG | + | chr3.1:64261954-64261973 | MS.gene70601:intron | 20.0% |
| !!! | AATTGACTCTATTCAAATAT+TGG | + | chr3.1:64263023-64263042 | MS.gene70601:intron | 20.0% |
| !!! | ATTCTCTTTAAAAATTCAGA+TGG | - | chr3.1:64262727-64262746 | None:intergenic | 20.0% |
| !!! | ATTTTAATCTTCCAATCTTT+AGG | - | chr3.1:64260730-64260749 | None:intergenic | 20.0% |
| !!! | CTGTTTTTGTTTATTATAGA+TGG | - | chr3.1:64262892-64262911 | None:intergenic | 20.0% |
| !!! | GTTTTGTTCATTAATTTGTT+TGG | + | chr3.1:64261118-64261137 | MS.gene70601:intron | 20.0% |
| !!! | TATTTTCAATCCTTTTTACA+GGG | + | chr3.1:64263141-64263160 | MS.gene70601:intron | 20.0% |
| !!! | TCTTTGTTTTTTGTTTTGTA+GGG | + | chr3.1:64260623-64260642 | MS.gene70601:intron | 20.0% |
| !!! | TGATTCTGTATATAGTTTTT+GGG | + | chr3.1:64262010-64262029 | MS.gene70601:CDS | 20.0% |
| !!! | TGATTTTTGTTTTTCCTTTT+AGG | + | chr3.1:64261294-64261313 | MS.gene70601:intron | 20.0% |
| !!! | TTATTTTCAATCCTTTTTAC+AGG | + | chr3.1:64263140-64263159 | MS.gene70601:intron | 20.0% |
| !!! | TTCTTTGTTTTTTGTTTTGT+AGG | + | chr3.1:64260622-64260641 | MS.gene70601:intron | 20.0% |
| ! | AAAACCATTGATATTCGATT+AGG | - | chr3.1:64260312-64260331 | None:intergenic | 25.0% |
| ! | AAACCATTGATATTCGATTA+GGG | - | chr3.1:64260311-64260330 | None:intergenic | 25.0% |
| ! | AACCACCAATGATAATAATA+AGG | - | chr3.1:64260574-64260593 | None:intergenic | 25.0% |
| ! | AACCTTATTATTATCATTGG+TGG | + | chr3.1:64260569-64260588 | MS.gene70601:intron | 25.0% |
| ! | CAACTATACCCAAATTAATA+GGG | - | chr3.1:64262826-64262845 | None:intergenic | 25.0% |
| ! | CCAAACCTTATTATTATCAT+TGG | + | chr3.1:64260566-64260585 | MS.gene70601:intron | 25.0% |
| ! | CCAATGATAATAATAAGGTT+TGG | - | chr3.1:64260569-64260588 | None:intergenic | 25.0% |
| ! | CTAAAAGTAATACCTTAGAT+GGG | + | chr3.1:64262134-64262153 | MS.gene70601:intron | 25.0% |
| ! | GAAAAATATGTTACCAACAT+TGG | - | chr3.1:64263055-64263074 | None:intergenic | 25.0% |
| ! | GTTAAACAATATTCACAGAT+TGG | + | chr3.1:64261978-64261997 | MS.gene70601:intron | 25.0% |
| ! | TAAAATCAGGAAAATGAAGA+TGG | + | chr3.1:64262662-64262681 | MS.gene70601:intron | 25.0% |
| ! | TAGTCTATCCCTATTAATTT+GGG | + | chr3.1:64262815-64262834 | MS.gene70601:intron | 25.0% |
| ! | TATTAAGGGTCTACAATTAT+AGG | - | chr3.1:64261407-64261426 | None:intergenic | 25.0% |
| ! | TCAACTATACCCAAATTAAT+AGG | - | chr3.1:64262827-64262846 | None:intergenic | 25.0% |
| ! | TGTAATATGCATAACAATAC+AGG | + | chr3.1:64263077-64263096 | MS.gene70601:intron | 25.0% |
| ! | TGTTTCTTCAGAATAAAATC+AGG | + | chr3.1:64262649-64262668 | MS.gene70601:intron | 25.0% |
| ! | TTAGTCTATCCCTATTAATT+TGG | + | chr3.1:64262814-64262833 | MS.gene70601:intron | 25.0% |
| ! | TTTACAAGCAATGAATTGAT+TGG | + | chr3.1:64261213-64261232 | MS.gene70601:intron | 25.0% |
| !! | AATTTAAGATTGTGAAATGG+AGG | - | chr3.1:64260221-64260240 | None:intergenic | 25.0% |
| !! | ATGCTTTAATTGTTCGTTTT+TGG | + | chr3.1:64262445-64262464 | MS.gene70601:intron | 25.0% |
| !! | CTGATTCTGTATATAGTTTT+TGG | + | chr3.1:64262009-64262028 | MS.gene70601:CDS | 25.0% |
| !! | TACAATTTCTAAGAAAGAAG+AGG | + | chr3.1:64260690-64260709 | MS.gene70601:CDS | 25.0% |
| !! | TACTTACTACATGGAAATTT+TGG | - | chr3.1:64262090-64262109 | None:intergenic | 25.0% |
| !! | TCATCAGATTTTAAATTAGC+AGG | - | chr3.1:64260430-64260449 | None:intergenic | 25.0% |
| !! | TGGAATTTAAGATTGTGAAA+TGG | - | chr3.1:64260224-64260243 | None:intergenic | 25.0% |
| !!! | GTGCTGATTTTTGTTTTTAT+GGG | + | chr3.1:64263115-64263134 | MS.gene70601:intron | 25.0% |
| !!! | TGAAATTCTATTTTTACTGC+AGG | + | chr3.1:64261793-64261812 | MS.gene70601:intron | 25.0% |
| !!! | TTGTTGTTATTTGTCGTTTT+AGG | + | chr3.1:64260913-64260932 | MS.gene70601:intron | 25.0% |
| AAAGTGAAAAAACCCATCTA+AGG | - | chr3.1:64262149-64262168 | None:intergenic | 30.0% | |
| AACACAAAAGGAATTTCAGT+CGG | + | chr3.1:64262697-64262716 | MS.gene70601:intron | 30.0% | |
| AACCATTGATATTCGATTAG+GGG | - | chr3.1:64260310-64260329 | None:intergenic | 30.0% | |
| ACTAATATTTCTTCGATAGG+TGG | - | chr3.1:64262483-64262502 | None:intergenic | 30.0% | |
| AGACCCTTAATATCATTATC+TGG | + | chr3.1:64261415-64261434 | MS.gene70601:intron | 30.0% | |
| AGGAGATTATATGAACAAGT+TGG | + | chr3.1:64261821-64261840 | MS.gene70601:CDS | 30.0% | |
| AGTGATGATCTTATTGATGA+TGG | - | chr3.1:64262292-64262311 | None:intergenic | 30.0% | |
| ATTCATGCTATTCTATCAGA+TGG | + | chr3.1:64261328-64261347 | MS.gene70601:CDS | 30.0% | |
| ATTTACCTGTAACTTGAAGA+CGG | - | chr3.1:64262043-64262062 | None:intergenic | 30.0% | |
| CACAGCAAAATGCTAAAATA+TGG | + | chr3.1:64262962-64262981 | MS.gene70601:intron | 30.0% | |
| CATGCTTAGTAGAAATGATA+TGG | + | chr3.1:64262192-64262211 | MS.gene70601:intron | 30.0% | |
| GCTAAAAGTAATACCTTAGA+TGG | + | chr3.1:64262133-64262152 | MS.gene70601:intron | 30.0% | |
| GCTTCTAATATTTCTTCGAT+AGG | - | chr3.1:64262574-64262593 | None:intergenic | 30.0% | |
| GGTTTCATATCTCAATTACT+AGG | + | chr3.1:64261086-64261105 | MS.gene70601:intron | 30.0% | |
| TAATAGGGATAGACTAATCA+AGG | - | chr3.1:64262811-64262830 | None:intergenic | 30.0% | |
| TATAGTTAGCATAACCATAG+AGG | - | chr3.1:64262398-64262417 | None:intergenic | 30.0% | |
| TCAATGAATGACATGAAACA+AGG | - | chr3.1:64260877-64260896 | None:intergenic | 30.0% | |
| TCTAATATTTCTTCGATAGG+TGG | - | chr3.1:64262571-64262590 | None:intergenic | 30.0% | |
| TGAACTAAAACAAAACTTGC+AGG | - | chr3.1:64260405-64260424 | None:intergenic | 30.0% | |
| TTCATGAACATCAACAAATG+TGG | + | chr3.1:64261152-64261171 | MS.gene70601:intron | 30.0% | |
| TTGTTTATTATAGATGGGCA+TGG | - | chr3.1:64262886-64262905 | None:intergenic | 30.0% | |
| ! | AATTTCTAAGAAAGAAGAGG+AGG | + | chr3.1:64260693-64260712 | MS.gene70601:CDS | 30.0% |
| ! | ATTTCTAAGAAAGAAGAGGA+GGG | + | chr3.1:64260694-64260713 | MS.gene70601:CDS | 30.0% |
| ! | TAGTATACATGCTCATCTTT+TGG | - | chr3.1:64261553-64261572 | None:intergenic | 30.0% |
| ! | TCTTCCTACCATACTTTTAA+AGG | + | chr3.1:64261886-64261905 | MS.gene70601:intron | 30.0% |
| ! | TGTTTTTCCTTTTAGGCTAT+GGG | + | chr3.1:64261301-64261320 | MS.gene70601:intron | 30.0% |
| ! | TTTTCACTTTAGTTGGACTT+GGG | + | chr3.1:64262159-64262178 | MS.gene70601:intron | 30.0% |
| ! | TTTTCTGCAGTAAAGCTAAA+GGG | - | chr3.1:64261929-64261948 | None:intergenic | 30.0% |
| ! | TTTTTCACTTTAGTTGGACT+TGG | + | chr3.1:64262158-64262177 | MS.gene70601:intron | 30.0% |
| ! | TTTTTCTGCAGTAAAGCTAA+AGG | - | chr3.1:64261930-64261949 | None:intergenic | 30.0% |
| !! | AACCGGTTCATATTTTGTAA+TGG | - | chr3.1:64261864-64261883 | None:intergenic | 30.0% |
| !! | ACCATCAAGTTTGTTGATAT+AGG | + | chr3.1:64260971-64260990 | MS.gene70601:CDS | 30.0% |
| !! | CTCTATTCAAATATTGGTTC+AGG | + | chr3.1:64263029-64263048 | MS.gene70601:intron | 30.0% |
| !! | TCTTTGATTTTTGCAACATG+AGG | - | chr3.1:64262850-64262869 | None:intergenic | 30.0% |
| !! | TTATATGAACAAGTTGGTCT+TGG | + | chr3.1:64261827-64261846 | MS.gene70601:CDS | 30.0% |
| !! | TTGTTTTTCCTTTTAGGCTA+TGG | + | chr3.1:64261300-64261319 | MS.gene70601:intron | 30.0% |
| !!! | ATGGGTTTTTTCACTTTAGT+TGG | + | chr3.1:64262152-64262171 | MS.gene70601:intron | 30.0% |
| !!! | GGTGCTGATTTTTGTTTTTA+TGG | + | chr3.1:64263114-64263133 | MS.gene70601:intron | 30.0% |
| AATGACATCCATTAATGCAG+AGG | + | chr3.1:64261697-64261716 | MS.gene70601:intron | 35.0% | |
| AATTCTTCCCATAGCCTAAA+AGG | - | chr3.1:64261311-64261330 | None:intergenic | 35.0% | |
| ACTTAAGTCCTCTGCATTAA+TGG | - | chr3.1:64261708-64261727 | None:intergenic | 35.0% | |
| AGTCCAATAAGCTTACGTTA+AGG | - | chr3.1:64260460-64260479 | None:intergenic | 35.0% | |
| AGTCCTTAACGTAAGCTTAT+TGG | + | chr3.1:64260454-64260473 | MS.gene70601:intron | 35.0% | |
| ATAGACTAATCAAGGCAATG+GGG | - | chr3.1:64262803-64262822 | None:intergenic | 35.0% | |
| ATCCCCTAATCGAATATCAA+TGG | + | chr3.1:64260305-64260324 | MS.gene70601:intron | 35.0% | |
| ATTAGAAGCTCGAAGAAAGA+AGG | + | chr3.1:64262585-64262604 | MS.gene70601:CDS | 35.0% | |
| CCAATAACAATGAACAAGTG+TGG | + | chr3.1:64260800-64260819 | MS.gene70601:intron | 35.0% | |
| CCACACTTGTTCATTGTTAT+TGG | - | chr3.1:64260803-64260822 | None:intergenic | 35.0% | |
| CGCCATTACAAAATATGAAC+CGG | + | chr3.1:64261859-64261878 | MS.gene70601:CDS | 35.0% | |
| GATAGACTAATCAAGGCAAT+GGG | - | chr3.1:64262804-64262823 | None:intergenic | 35.0% | |
| GCCTATATCAACAAACTTGA+TGG | - | chr3.1:64260975-64260994 | None:intergenic | 35.0% | |
| TTTACTGCAGAAAAATGCCT+TGG | + | chr3.1:64261935-64261954 | MS.gene70601:intron | 35.0% | |
| TTTCAACTTCTATGTAACCC+CGG | + | chr3.1:64261609-64261628 | MS.gene70601:intron | 35.0% | |
| ! | AAATACCGTCTTCAAGTTAC+AGG | + | chr3.1:64262035-64262054 | MS.gene70601:CDS | 35.0% |
| ! | AGTGAGAGTACAAATACTGA+GGG | - | chr3.1:64261731-64261750 | None:intergenic | 35.0% |
| ! | ATACAGGTTTGAGTACTGTT+TGG | + | chr3.1:64263093-64263112 | MS.gene70601:intron | 35.0% |
| ! | CTCAATAGTTCTATGCTTCT+CGG | - | chr3.1:64262231-64262250 | None:intergenic | 35.0% |
| ! | TCAATAGTTCTATGCTTCTC+GGG | - | chr3.1:64262230-64262249 | None:intergenic | 35.0% |
| ! | TTCTGCGTCCTTTAAAAGTA+TGG | - | chr3.1:64261897-64261916 | None:intergenic | 35.0% |
| !! | TATTTTTACTGCAGGCGTTT+AGG | + | chr3.1:64261801-64261820 | MS.gene70601:intron | 35.0% |
| !!! | ATTGTTCGTTTTTGGTTTCC+AGG | + | chr3.1:64262453-64262472 | MS.gene70601:intron | 35.0% |
| AACTGTTAGTCCCTTCTCTA+TGG | + | chr3.1:64261039-64261058 | MS.gene70601:intron | 40.0% | |
| AAGAAGCCATACTTCGACAT+CGG | - | chr3.1:64261365-64261384 | None:intergenic | 40.0% | |
| ACACTTCCTATTCTCAAACC+CGG | + | chr3.1:64260281-64260300 | MS.gene70601:CDS | 40.0% | |
| AGTATGGTAGGAAGACTAAC+CGG | - | chr3.1:64261881-64261900 | None:intergenic | 40.0% | |
| ATATTCGATTAGGGGATACC+GGG | - | chr3.1:64260302-64260321 | None:intergenic | 40.0% | |
| CGAGAGAAGAACAAGAGTTA+TGG | + | chr3.1:64260947-64260966 | MS.gene70601:CDS | 40.0% | |
| GAGAACAGTCTCCTAAAGAT+TGG | + | chr3.1:64260716-64260735 | MS.gene70601:CDS | 40.0% | |
| GATATTCGATTAGGGGATAC+CGG | - | chr3.1:64260303-64260322 | None:intergenic | 40.0% | |
| GCATACTTCACCCTGTAAAA+AGG | - | chr3.1:64263154-64263173 | None:intergenic | 40.0% | |
| GGATAGACTAATCAAGGCAA+TGG | - | chr3.1:64262805-64262824 | None:intergenic | 40.0% | |
| TGAAATGGAGGTGAAAAGAG+TGG | - | chr3.1:64260209-64260228 | None:intergenic | 40.0% | |
| TGTCATACGAATCTGTTCAG+TGG | + | chr3.1:64261750-64261769 | MS.gene70601:intron | 40.0% | |
| ! | AGGCATAGTGTTTAGAGTTC+TGG | + | chr3.1:64262996-64263015 | MS.gene70601:intron | 40.0% |
| ! | CAGTGAGAGTACAAATACTG+AGG | - | chr3.1:64261732-64261751 | None:intergenic | 40.0% |
| ! | GACTAACAGTTTGATAGTCG+AGG | - | chr3.1:64261030-64261049 | None:intergenic | 40.0% |
| ! | GCGTCCTTTAAAAGTATGGT+AGG | - | chr3.1:64261893-64261912 | None:intergenic | 40.0% |
| ! | GGTTTGAGAATAGGAAGTGT+TGG | - | chr3.1:64260281-64260300 | None:intergenic | 40.0% |
| ! | GTGAAAAGAGTGGTGATGAT+GGG | - | chr3.1:64260199-64260218 | None:intergenic | 40.0% |
| !! | AGGAAGTGTTGGAAAAGCAT+CGG | - | chr3.1:64260270-64260289 | None:intergenic | 40.0% |
| !! | ATATTGGTTCAGGCCAATGT+TGG | + | chr3.1:64263039-64263058 | MS.gene70601:intron | 40.0% |
| !! | ATGAACAAGTTGGTCTTGGT+TGG | + | chr3.1:64261831-64261850 | MS.gene70601:CDS | 40.0% |
| !! | CAGCTTTAGACCATAGAGAA+GGG | - | chr3.1:64261052-64261071 | None:intergenic | 40.0% |
| !! | TCAGCTTTAGACCATAGAGA+AGG | - | chr3.1:64261053-64261072 | None:intergenic | 40.0% |
| !! | TGAACAAGTTGGTCTTGGTT+GGG | + | chr3.1:64261832-64261851 | MS.gene70601:CDS | 40.0% |
| ACTTCTATGTAACCCCGGAA+TGG | + | chr3.1:64261614-64261633 | MS.gene70601:intron | 45.0% | |
| TGTACCTCTCGCATGCATAA+TGG | - | chr3.1:64260772-64260791 | None:intergenic | 45.0% | |
| TTGTCACCGATGTCGAAGTA+TGG | + | chr3.1:64261356-64261375 | MS.gene70601:intron | 45.0% | |
| TTGTCCATTATGCATGCGAG+AGG | + | chr3.1:64260765-64260784 | MS.gene70601:CDS | 45.0% | |
| ! | GGTGAAAAGAGTGGTGATGA+TGG | - | chr3.1:64260200-64260219 | None:intergenic | 45.0% |
| !! | AGAGTGGTGATGATGGGTTA+TGG | - | chr3.1:64260193-64260212 | None:intergenic | 45.0% |
| !! | AGTGGTGATGATGGGTTATG+GGG | - | chr3.1:64260191-64260210 | None:intergenic | 45.0% |
| !! | GAGTGGTGATGATGGGTTAT+GGG | - | chr3.1:64260192-64260211 | None:intergenic | 45.0% |
| AAAGATGCAGCAGCCATTCC+GGG | - | chr3.1:64261630-64261649 | None:intergenic | 50.0% | |
| CAAAGATGCAGCAGCCATTC+CGG | - | chr3.1:64261631-64261650 | None:intergenic | 50.0% | |
| GATTGGTGCATGCATGTGTG+AGG | + | chr3.1:64261230-64261249 | MS.gene70601:intron | 50.0% | |
| GGGATACCGGGTTTGAGAAT+AGG | - | chr3.1:64260290-64260309 | None:intergenic | 50.0% | |
| GTGAAAGATGAGGACGGAGA+TGG | - | chr3.1:64260244-64260263 | None:intergenic | 50.0% | |
| GTGAGCAAGACTTGCCTCTA+TGG | + | chr3.1:64262381-64262400 | MS.gene70601:intron | 50.0% | |
| TACTCTCCCGACGAGAATCA+GGG | + | chr3.1:64261004-64261023 | MS.gene70601:CDS | 50.0% | |
| TAGTTGGACTTGGGCTGATG+TGG | + | chr3.1:64262168-64262187 | MS.gene70601:intron | 50.0% | |
| TTACTCTCCCGACGAGAATC+AGG | + | chr3.1:64261003-64261022 | MS.gene70601:CDS | 50.0% | |
| AAGATGCAGCAGCCATTCCG+GGG | - | chr3.1:64261629-64261648 | None:intergenic | 55.0% | |
| CGGCGTGTGAAAGATGAGGA+CGG | - | chr3.1:64260250-64260269 | None:intergenic | 55.0% | |
| TCTTCGATAGGTGGTCGTCC+TGG | - | chr3.1:64262474-64262493 | None:intergenic | 55.0% | |
| ! | GCATCGGCGTGTGAAAGATG+AGG | - | chr3.1:64260254-64260273 | None:intergenic | 55.0% |
| GTCGAGGCCCTGATTCTCGT+CGG | - | chr3.1:64261014-64261033 | None:intergenic | 60.0% | |
| TCGAGGCCCTGATTCTCGTC+GGG | - | chr3.1:64261013-64261032 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.1 | gene | 64260143 | 64263200 | 64260143 | ID=MS.gene70601 |
| chr3.1 | mRNA | 64260143 | 64263200 | 64260143 | ID=MS.gene70601.t1;Parent=MS.gene70601 |
| chr3.1 | exon | 64260143 | 64260302 | 64260143 | ID=MS.gene70601.t1.exon1;Parent=MS.gene70601.t1 |
| chr3.1 | CDS | 64260143 | 64260302 | 64260143 | ID=cds.MS.gene70601.t1;Parent=MS.gene70601.t1 |
| chr3.1 | exon | 64260644 | 64260786 | 64260644 | ID=MS.gene70601.t1.exon2;Parent=MS.gene70601.t1 |
| chr3.1 | CDS | 64260644 | 64260786 | 64260644 | ID=cds.MS.gene70601.t1;Parent=MS.gene70601.t1 |
| chr3.1 | exon | 64260935 | 64261042 | 64260935 | ID=MS.gene70601.t1.exon3;Parent=MS.gene70601.t1 |
| chr3.1 | CDS | 64260935 | 64261042 | 64260935 | ID=cds.MS.gene70601.t1;Parent=MS.gene70601.t1 |
| chr3.1 | exon | 64261316 | 64261372 | 64261316 | ID=MS.gene70601.t1.exon4;Parent=MS.gene70601.t1 |
| chr3.1 | CDS | 64261316 | 64261372 | 64261316 | ID=cds.MS.gene70601.t1;Parent=MS.gene70601.t1 |
| chr3.1 | exon | 64261815 | 64261880 | 64261815 | ID=MS.gene70601.t1.exon5;Parent=MS.gene70601.t1 |
| chr3.1 | CDS | 64261815 | 64261880 | 64261815 | ID=cds.MS.gene70601.t1;Parent=MS.gene70601.t1 |
| chr3.1 | exon | 64261996 | 64262056 | 64261996 | ID=MS.gene70601.t1.exon6;Parent=MS.gene70601.t1 |
| chr3.1 | CDS | 64261996 | 64262056 | 64261996 | ID=cds.MS.gene70601.t1;Parent=MS.gene70601.t1 |
| chr3.1 | exon | 64262563 | 64262606 | 64262563 | ID=MS.gene70601.t1.exon7;Parent=MS.gene70601.t1 |
| chr3.1 | CDS | 64262563 | 64262606 | 64262563 | ID=cds.MS.gene70601.t1;Parent=MS.gene70601.t1 |
| chr3.1 | exon | 64263162 | 64263200 | 64263162 | ID=MS.gene70601.t1.exon8;Parent=MS.gene70601.t1 |
| chr3.1 | CDS | 64263162 | 64263200 | 64263162 | ID=cds.MS.gene70601.t1;Parent=MS.gene70601.t1 |
| Gene Sequence |
| Protein sequence |
