Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene41083.t1 | XP_003592452.2 | 98.2 | 390 | 6 | 1 | 1 | 390 | 75 | 463 | 2.40E-211 | 744.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene41083.t1 | Q9FNY0 | 58.7 | 397 | 132 | 10 | 8 | 390 | 107 | 485 | 6.1e-115 | 415.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene41083.t1 | G7IE33 | 98.2 | 390 | 6 | 1 | 1 | 390 | 75 | 463 | 1.7e-211 | 744.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene41083.t1 | TF | E2F-DP |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene055644 | MS.gene41083 | 0.813011 | 3.18E-51 | -1.69E-46 |
| MS.gene055646 | MS.gene41083 | 0.965229 | 2.47E-124 | -1.69E-46 |
PPI:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene41083.t1 | MTR_1g105110 | 98.205 | 390 | 6 | 1 | 1 | 390 | 75 | 463 | 0.0 | 781 |
| MS.gene41083.t1 | MTR_4g052000 | 62.467 | 381 | 133 | 6 | 14 | 387 | 80 | 457 | 2.00e-160 | 459 |
| MS.gene41083.t1 | MTR_3g113800 | 54.260 | 223 | 99 | 1 | 53 | 275 | 89 | 308 | 5.74e-73 | 232 |
| MS.gene41083.t1 | MTR_3g113800 | 58.000 | 200 | 81 | 1 | 53 | 252 | 89 | 285 | 9.53e-71 | 224 |
| MS.gene41083.t1 | MTR_4g106540 | 44.776 | 67 | 37 | 0 | 69 | 135 | 17 | 83 | 3.06e-11 | 64.7 |
| MS.gene41083.t1 | MTR_4g106540 | 44.776 | 67 | 37 | 0 | 69 | 135 | 17 | 83 | 3.23e-11 | 64.7 |
| MS.gene41083.t1 | MTR_4g106540 | 44.776 | 67 | 37 | 0 | 69 | 135 | 17 | 83 | 3.25e-11 | 64.7 |
| MS.gene41083.t1 | MTR_4g106540 | 44.776 | 67 | 37 | 0 | 69 | 135 | 17 | 83 | 3.42e-11 | 64.3 |
| MS.gene41083.t1 | MTR_4g106540 | 44.776 | 67 | 37 | 0 | 69 | 135 | 17 | 83 | 4.33e-11 | 64.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene41083.t1 | AT2G36010 | 60.000 | 390 | 125 | 10 | 8 | 384 | 107 | 478 | 1.89e-152 | 439 |
| MS.gene41083.t1 | AT2G36010 | 59.694 | 392 | 125 | 11 | 8 | 384 | 107 | 480 | 1.90e-150 | 434 |
| MS.gene41083.t1 | AT5G22220 | 57.772 | 386 | 138 | 10 | 25 | 387 | 83 | 466 | 2.66e-136 | 398 |
| MS.gene41083.t1 | AT5G22220 | 57.441 | 383 | 141 | 9 | 25 | 387 | 83 | 463 | 1.04e-133 | 391 |
| MS.gene41083.t1 | AT2G36010 | 53.197 | 391 | 131 | 12 | 8 | 384 | 157 | 509 | 7.48e-121 | 360 |
| MS.gene41083.t1 | AT1G47870 | 47.003 | 317 | 118 | 7 | 31 | 346 | 123 | 390 | 5.43e-80 | 251 |
| MS.gene41083.t1 | AT1G47870 | 47.003 | 317 | 118 | 7 | 31 | 346 | 124 | 391 | 5.71e-80 | 251 |
| MS.gene41083.t1 | AT5G14960 | 41.304 | 92 | 49 | 1 | 62 | 153 | 6 | 92 | 1.06e-12 | 69.3 |
| MS.gene41083.t1 | AT3G48160 | 45.205 | 73 | 39 | 1 | 69 | 141 | 34 | 105 | 2.91e-11 | 65.1 |
| MS.gene41083.t1 | AT3G48160 | 45.205 | 73 | 39 | 1 | 69 | 141 | 34 | 105 | 3.09e-11 | 64.7 |
| MS.gene41083.t1 | AT3G01330 | 41.791 | 67 | 39 | 0 | 69 | 135 | 21 | 87 | 9.66e-11 | 63.2 |
Find 0 sgRNAs with CRISPR-Local
Find 265 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TAGAAAAAATGTATATATTT+TGG | - | 10676:1882-1901 | None:intergenic | 10.0% |
| !!! | TTTTTTTAGTATTTAATGAT+TGG | + | 10676:4493-4512 | MS.gene41083:intron | 10.0% |
| !!! | AAAATCTTTTGTATAGAATA+CGG | - | 10676:1679-1698 | None:intergenic | 15.0% |
| !! | AAATGAATCTAAGAACTAAA+TGG | - | 10676:3476-3495 | None:intergenic | 20.0% |
| !! | AAGTCATTCTAATTAATTTC+TGG | - | 10676:3142-3161 | None:intergenic | 20.0% |
| !! | AATGAATCTAAGAACTAAAT+GGG | - | 10676:3475-3494 | None:intergenic | 20.0% |
| !! | AATTAATTAGAATGACTTAG+TGG | + | 10676:3144-3163 | MS.gene41083:intron | 20.0% |
| !! | AGAAAAAGTAACAGATATAT+TGG | - | 10676:1704-1723 | None:intergenic | 20.0% |
| !! | ATATCAAGAACAGAATATAT+TGG | + | 10676:1828-1847 | MS.gene41083:CDS | 20.0% |
| !! | TAGATAAATGGAAAGTTAAT+CGG | - | 10676:1330-1349 | None:intergenic | 20.0% |
| !! | TCAAAAATTCCAAAATTAAC+TGG | - | 10676:4114-4133 | None:intergenic | 20.0% |
| !! | TTTAAATTCTCCTATACTAT+AGG | + | 10676:1742-1761 | MS.gene41083:intron | 20.0% |
| !!! | AACAATGTTGATAATACAAA+TGG | - | 10676:3664-3683 | None:intergenic | 20.0% |
| !!! | AGAAAAGCATTAAAACAAAA+AGG | - | 10676:4632-4651 | None:intergenic | 20.0% |
| !!! | ATATGACATAACTAATGTTT+TGG | + | 10676:1781-1800 | MS.gene41083:CDS | 20.0% |
| !!! | TTGTTTTCTCATATTGATAA+GGG | + | 10676:2284-2303 | MS.gene41083:intron | 20.0% |
| !!! | TTTGTATTGATTAAACACTT+CGG | + | 10676:4453-4472 | MS.gene41083:intron | 20.0% |
| ! | AATACTAAAAAAACAACTGC+AGG | - | 10676:4486-4505 | None:intergenic | 25.0% |
| ! | AATATGTTGTGATAAGGATA+AGG | + | 10676:2950-2969 | MS.gene41083:intron | 25.0% |
| ! | ACCTAAAAGGAATTGAAAAT+TGG | - | 10676:3557-3576 | None:intergenic | 25.0% |
| ! | AGATAAATGGAAAGTTAATC+GGG | - | 10676:1329-1348 | None:intergenic | 25.0% |
| ! | AGGAGAATTTAAATTCATGT+AGG | - | 10676:1735-1754 | None:intergenic | 25.0% |
| ! | ATTGTATAACAATTAGTTCC+AGG | - | 10676:2068-2087 | None:intergenic | 25.0% |
| ! | GAGAAATTTGAAGAGATTAA+TGG | + | 10676:4155-4174 | MS.gene41083:CDS | 25.0% |
| ! | TACACTAATACATATCTAGA+AGG | - | 10676:1519-1538 | None:intergenic | 25.0% |
| ! | TGATAGCATCAATATAAACA+TGG | - | 10676:2191-2210 | None:intergenic | 25.0% |
| ! | TGATGCTATCAATATTGAAA+AGG | + | 10676:2200-2219 | MS.gene41083:intron | 25.0% |
| ! | TTGAACATAACGTAGATAAA+TGG | - | 10676:1342-1361 | None:intergenic | 25.0% |
| !! | AATAACAATACTTTTCCTTC+TGG | - | 10676:3515-3534 | None:intergenic | 25.0% |
| !! | ACCAATTTTCAATTCCTTTT+AGG | + | 10676:3553-3572 | MS.gene41083:intron | 25.0% |
| !! | CTTTTGAACCATTATTAACA+GGG | + | 10676:3393-3412 | MS.gene41083:intron | 25.0% |
| !! | TAGATATTTGAAACTGAGTT+TGG | + | 10676:3016-3035 | MS.gene41083:intron | 25.0% |
| !! | TATGTATATCAAGTTGTTAG+AGG | + | 10676:3068-3087 | MS.gene41083:intron | 25.0% |
| !! | TGAAAAGGATTAGTAATGAA+AGG | + | 10676:2215-2234 | MS.gene41083:intron | 25.0% |
| !!! | GTTGATAATACAAATGGAAA+AGG | - | 10676:3658-3677 | None:intergenic | 25.0% |
| !!! | GTTGTTTTCTCATATTGATA+AGG | + | 10676:2283-2302 | MS.gene41083:intron | 25.0% |
| !!! | TTGTTTTTGCATGTTGATAA+GGG | + | 10676:2993-3012 | MS.gene41083:intron | 25.0% |
| !!! | TTTGTTTTTGCATGTTGATA+AGG | + | 10676:2992-3011 | MS.gene41083:intron | 25.0% |
| AAAGGATAGTATCAATCTCT+TGG | + | 10676:2233-2252 | MS.gene41083:intron | 30.0% | |
| AACATTCTCCTCTAACATAT+GGG | - | 10676:2789-2808 | None:intergenic | 30.0% | |
| AACTTATACAAGAACTTCAC+AGG | + | 10676:1566-1585 | MS.gene41083:intron | 30.0% | |
| AATCTCAATAACAGCATGAA+AGG | - | 10676:3694-3713 | None:intergenic | 30.0% | |
| AATTCTTACATCAAACCTTG+TGG | + | 10676:1940-1959 | MS.gene41083:intron | 30.0% | |
| ACTAAATGGGAAATTACTTC+TGG | - | 10676:3462-3481 | None:intergenic | 30.0% | |
| AGTATCAATCTCTTGGAATA+AGG | + | 10676:2240-2259 | MS.gene41083:intron | 30.0% | |
| AGTGTCAATATGTTGTGATA+AGG | + | 10676:2944-2963 | MS.gene41083:intron | 30.0% | |
| ATACATATCTAGAAGGTGAA+TGG | - | 10676:1512-1531 | None:intergenic | 30.0% | |
| ATTGCTTCCAAAATTACCTA+AGG | - | 10676:1470-1489 | None:intergenic | 30.0% | |
| CAGCAAATAGACATTATAGT+TGG | - | 10676:2128-2147 | None:intergenic | 30.0% | |
| CTCTTCAAATTGACTGAAAA+CGG | - | 10676:4138-4157 | None:intergenic | 30.0% | |
| GATGATCAGATAAGGTTATA+TGG | + | 10676:3317-3336 | MS.gene41083:intron | 30.0% | |
| GGAGATATAGAATCATTCTA+AGG | + | 10676:3933-3952 | MS.gene41083:CDS | 30.0% | |
| GTATCAATCTCTTGGAATAA+GGG | + | 10676:2241-2260 | MS.gene41083:intron | 30.0% | |
| TACATATCTAGAAGGTGAAT+GGG | - | 10676:1511-1530 | None:intergenic | 30.0% | |
| TATAGTTTCTTATGGCATGT+AGG | + | 10676:1397-1416 | MS.gene41083:intron | 30.0% | |
| TCATTACATTAGTGTATCCA+GGG | - | 10676:1189-1208 | None:intergenic | 30.0% | |
| TGAATGTTGTAACTCAAACT+AGG | + | 10676:2820-2839 | MS.gene41083:intron | 30.0% | |
| TTAATGCTTCCATATGCATT+AGG | + | 10676:3892-3911 | MS.gene41083:intron | 30.0% | |
| TTACAACATTCAACTAGTTG+TGG | - | 10676:2812-2831 | None:intergenic | 30.0% | |
| TTCATTACATTAGTGTATCC+AGG | - | 10676:1190-1209 | None:intergenic | 30.0% | |
| TTGCATTTCCCTGTTAATAA+TGG | - | 10676:3404-3423 | None:intergenic | 30.0% | |
| TTTACTTAGAAACAATCCCA+GGG | - | 10676:2566-2585 | None:intergenic | 30.0% | |
| ! | ATGCATTCTCCAGTTAATTT+TGG | + | 10676:4102-4121 | MS.gene41083:intron | 30.0% |
| ! | GCTTTTGAACCATTATTAAC+AGG | + | 10676:3392-3411 | MS.gene41083:intron | 30.0% |
| ! | GGTTGCTTTATATCACAAAA+AGG | + | 10676:3338-3357 | MS.gene41083:intron | 30.0% |
| ! | TGTAGAATGATGCTGATTAT+TGG | + | 10676:4553-4572 | MS.gene41083:intron | 30.0% |
| ! | TGTGTGTGTTACTAATATGT+AGG | - | 10676:4016-4035 | None:intergenic | 30.0% |
| !! | GACATAACTAATGTTTTGGA+AGG | + | 10676:1785-1804 | MS.gene41083:CDS | 30.0% |
| AAAACTCCTTTGTCTGCAAA+AGG | + | 10676:1220-1239 | MS.gene41083:CDS | 35.0% | |
| AAACTCCTTTGTCTGCAAAA+GGG | + | 10676:1221-1240 | MS.gene41083:CDS | 35.0% | |
| AACTTGATTACTTTGTGGTC+TGG | - | 10676:2644-2663 | None:intergenic | 35.0% | |
| AATGTTTCACAAGAGTTTGC+TGG | + | 10676:4320-4339 | MS.gene41083:CDS | 35.0% | |
| AATTAGTTCCAGGTGTCAAT+AGG | - | 10676:2058-2077 | None:intergenic | 35.0% | |
| AGAGACTAGATGATCAGATA+AGG | + | 10676:3309-3328 | MS.gene41083:CDS | 35.0% | |
| ATACTTACATCAGCATCTGA+AGG | - | 10676:4365-4384 | None:intergenic | 35.0% | |
| ATCAACATTAGCTGTTATGC+TGG | - | 10676:4724-4743 | None:intergenic | 35.0% | |
| ATCCTGAGGAAGTAAGTTTA+GGG | + | 10676:3807-3826 | MS.gene41083:intron | 35.0% | |
| ATTAGAATGACTTAGTGGCA+TGG | + | 10676:3149-3168 | MS.gene41083:intron | 35.0% | |
| CAATTGATGTCTACCTTATC+AGG | + | 10676:3969-3988 | MS.gene41083:CDS | 35.0% | |
| CCAATTAACAACATGTTGCA+AGG | - | 10676:3230-3249 | None:intergenic | 35.0% | |
| CCATAAGAAACTATAAGCTG+GGG | - | 10676:1392-1411 | None:intergenic | 35.0% | |
| CCTTGCAACATGTTGTTAAT+TGG | + | 10676:3227-3246 | MS.gene41083:intron | 35.0% | |
| CTATACTATAGGTGCAAAAG+AGG | + | 10676:1753-1772 | MS.gene41083:intron | 35.0% | |
| CTGATAAGGTAGACATCAAT+TGG | - | 10676:3971-3990 | None:intergenic | 35.0% | |
| GAACATTCTCCTCTAACATA+TGG | - | 10676:2790-2809 | None:intergenic | 35.0% | |
| GAGTTAGCATAACAGATATG+TGG | + | 10676:4592-4611 | MS.gene41083:CDS | 35.0% | |
| GCAAGTAGTTATACCTGATA+AGG | - | 10676:3985-4004 | None:intergenic | 35.0% | |
| GCATAACAGCTAATGTTGAT+TGG | + | 10676:4724-4743 | MS.gene41083:intron | 35.0% | |
| GCCATAAGAAACTATAAGCT+GGG | - | 10676:1393-1412 | None:intergenic | 35.0% | |
| GCTCTAACTTGATTACTTTG+TGG | - | 10676:2649-2668 | None:intergenic | 35.0% | |
| GTCACAAAAAGGAACCTAAA+AGG | - | 10676:3570-3589 | None:intergenic | 35.0% | |
| GTTTACTTAGAAACAATCCC+AGG | - | 10676:2567-2586 | None:intergenic | 35.0% | |
| TACTTACATCAGCATCTGAA+GGG | - | 10676:4364-4383 | None:intergenic | 35.0% | |
| TGCCATAAGAAACTATAAGC+TGG | - | 10676:1394-1413 | None:intergenic | 35.0% | |
| TGGAAATGAATATACACGAG+CGG | - | 10676:2108-2127 | None:intergenic | 35.0% | |
| TGGTGATATCTCTTTGCTTA+AGG | + | 10676:2003-2022 | MS.gene41083:CDS | 35.0% | |
| TTAGGGAATCAACTGATGAA+AGG | + | 10676:3824-3843 | MS.gene41083:intron | 35.0% | |
| TTGATTAAACACTTCGGATG+CGG | + | 10676:4459-4478 | MS.gene41083:intron | 35.0% | |
| TTGCTGCACTCAACATTTAA+CGG | + | 10676:2142-2161 | MS.gene41083:intron | 35.0% | |
| ! | AAAGCTTTTCTGTCTCAATG+GGG | + | 10676:2429-2448 | MS.gene41083:intron | 35.0% |
| ! | AATCATTCTAAGGAGCACAA+TGG | + | 10676:3943-3962 | MS.gene41083:CDS | 35.0% |
| ! | ACAATACTTTTCCTTCTGGA+AGG | - | 10676:3511-3530 | None:intergenic | 35.0% |
| ! | ATCATTCTAAGGAGCACAAT+GGG | + | 10676:3944-3963 | MS.gene41083:CDS | 35.0% |
| ! | ATGTTTCACAAGAGTTTGCT+GGG | + | 10676:4321-4340 | MS.gene41083:CDS | 35.0% |
| ! | CAAAGCTTTTCTGTCTCAAT+GGG | + | 10676:2428-2447 | MS.gene41083:intron | 35.0% |
| ! | CTAGTGTTTCTGATACATGA+TGG | + | 10676:3865-3884 | MS.gene41083:intron | 35.0% |
| ! | CTCTTTTGCACCTATAGTAT+AGG | - | 10676:1755-1774 | None:intergenic | 35.0% |
| ! | GACAGTTCCTTAGGTAATTT+TGG | + | 10676:1460-1479 | MS.gene41083:intron | 35.0% |
| ! | TCAAAGCTTTTCTGTCTCAA+TGG | + | 10676:2427-2446 | MS.gene41083:intron | 35.0% |
| !!! | ACTAATGTTTTGGAAGGCAT+TGG | + | 10676:1791-1810 | MS.gene41083:CDS | 35.0% |
| AAACTTACTTCCTCAGGATC+AGG | - | 10676:3806-3825 | None:intergenic | 40.0% | |
| AACTCCTTTGTCTGCAAAAG+GGG | + | 10676:1222-1241 | MS.gene41083:CDS | 40.0% | |
| ACATGTTGTTAATTGGCTGC+TGG | + | 10676:3234-3253 | MS.gene41083:intron | 40.0% | |
| ATATCACCATCCACATTACC+AGG | - | 10676:1992-2011 | None:intergenic | 40.0% | |
| ATTACTTTGTGGTCTGGCAT+TGG | - | 10676:2638-2657 | None:intergenic | 40.0% | |
| CAGAAACATTGAGTAGACAG+AGG | + | 10676:2586-2605 | MS.gene41083:intron | 40.0% | |
| CCCCAGCTTATAGTTTCTTA+TGG | + | 10676:1389-1408 | MS.gene41083:intron | 40.0% | |
| CTCAAACTTTCTCTCTCCTA+TGG | - | 10676:2343-2362 | None:intergenic | 40.0% | |
| GAATTATGTTGTCAGCCTTG+TGG | + | 10676:3188-3207 | MS.gene41083:intron | 40.0% | |
| GATCCTGAGGAAGTAAGTTT+AGG | + | 10676:3806-3825 | MS.gene41083:intron | 40.0% | |
| GCAAAAACAAAGAACTCACC+TGG | - | 10676:3623-3642 | None:intergenic | 40.0% | |
| GTGACCGAGGAAGATATTAA+GGG | + | 10676:3585-3604 | MS.gene41083:CDS | 40.0% | |
| TAAAGCAGCAGAAACTTTGC+AGG | + | 10676:1652-1671 | MS.gene41083:CDS | 40.0% | |
| TACTATAGGTGCAAAAGAGG+AGG | + | 10676:1756-1775 | MS.gene41083:intron | 40.0% | |
| TAGCTGTTATGCTGGAGTTA+AGG | - | 10676:4716-4735 | None:intergenic | 40.0% | |
| TAGGCCCTTAATATCTTCCT+CGG | - | 10676:3592-3611 | None:intergenic | 40.0% | |
| TATCTTCCTCGGTCACAAAA+AGG | - | 10676:3581-3600 | None:intergenic | 40.0% | |
| TGAGCAACAAGTGACAGAAA+TGG | + | 10676:4226-4245 | MS.gene41083:CDS | 40.0% | |
| TGTCGTTATGACAGTTCCTT+AGG | + | 10676:1451-1470 | MS.gene41083:CDS | 40.0% | |
| TGTGACCGAGGAAGATATTA+AGG | + | 10676:3584-3603 | MS.gene41083:CDS | 40.0% | |
| TTCCCTAAACTTACTTCCTC+AGG | - | 10676:3812-3831 | None:intergenic | 40.0% | |
| ! | AAGTATATCACAGCCTTGTG+AGG | + | 10676:4379-4398 | MS.gene41083:intron | 40.0% |
| ! | ACAGCTAATGTTGATTGGAG+TGG | + | 10676:4729-4748 | MS.gene41083:intron | 40.0% |
| ! | AGGACATGATTTGCCTTCTT+TGG | - | 10676:1272-1291 | None:intergenic | 40.0% |
| ! | AGTATATCACAGCCTTGTGA+GGG | + | 10676:4380-4399 | MS.gene41083:intron | 40.0% |
| ! | CACTTCATACTGGGGATTTT+GGG | + | 10676:4412-4431 | MS.gene41083:intron | 40.0% |
| ! | CCAGGGTACTTGATAAAACT+TGG | + | 10676:2872-2891 | MS.gene41083:intron | 40.0% |
| ! | TAATGTTGATTGGAGTGGAG+TGG | + | 10676:4734-4753 | MS.gene41083:CDS | 40.0% |
| ! | TACCTCTTGCTTCAAGTTCA+GGG | + | 10676:4198-4217 | MS.gene41083:CDS | 40.0% |
| ! | TTACCTCTTGCTTCAAGTTC+AGG | + | 10676:4197-4216 | MS.gene41083:CDS | 40.0% |
| ! | TTAGAGGCACATGTATGCAA+AGG | + | 10676:3084-3103 | MS.gene41083:intron | 40.0% |
| ! | TTCTGACCAGCATTTGAGAT+AGG | - | 10676:1301-1320 | None:intergenic | 40.0% |
| !! | AGAAGCACTAGAAACTCCAT+AGG | + | 10676:2324-2343 | MS.gene41083:intron | 40.0% |
| !! | AGTTCTAAGTCAAAGCCACA+AGG | - | 10676:3206-3225 | None:intergenic | 40.0% |
| !! | ATACTTTTCCTTCTGGAAGG+AGG | - | 10676:3508-3527 | None:intergenic | 40.0% |
| !! | CCAAGTTTTATCAAGTACCC+TGG | - | 10676:2875-2894 | None:intergenic | 40.0% |
| !! | TATTGGCTTCTATCAGATGC+TGG | + | 10676:4570-4589 | MS.gene41083:CDS | 40.0% |
| !! | TGCAGACAAAGGAGTTTTGA+AGG | - | 10676:1218-1237 | None:intergenic | 40.0% |
| !! | TGTTTCACAAGAGTTTGCTG+GGG | + | 10676:4322-4341 | MS.gene41083:CDS | 40.0% |
| !!! | CAGACAAAGGAGTTTTGAAG+GGG | - | 10676:1216-1235 | None:intergenic | 40.0% |
| !!! | GCAGACAAAGGAGTTTTGAA+GGG | - | 10676:1217-1236 | None:intergenic | 40.0% |
| AAAGAACTCACCTGGAAGCA+AGG | - | 10676:3615-3634 | None:intergenic | 45.0% | |
| AAATCCCCAGTATGAAGTGG+AGG | - | 10676:4411-4430 | None:intergenic | 45.0% | |
| AATCCCCAGTATGAAGTGGA+GGG | - | 10676:4410-4429 | None:intergenic | 45.0% | |
| ACATTACCTCCTCAAGCTCA+GGG | + | 10676:2520-2539 | MS.gene41083:intron | 45.0% | |
| ACGGCTGTCATCAATGTTTG+AGG | + | 10676:2697-2716 | MS.gene41083:intron | 45.0% | |
| ACTCCTTTGTCTGCAAAAGG+GGG | + | 10676:1223-1242 | MS.gene41083:CDS | 45.0% | |
| AGAAGACCTGCAAAGTGAAC+GGG | + | 10676:2735-2754 | MS.gene41083:intron | 45.0% | |
| AGCAGAAGCCCATATGTTAG+AGG | + | 10676:2778-2797 | MS.gene41083:intron | 45.0% | |
| AGCATGGGGATTATGTGAGA+TGG | - | 10676:2899-2918 | None:intergenic | 45.0% | |
| AGGTCTTCTGTGATGCTGAT+TGG | - | 10676:2724-2743 | None:intergenic | 45.0% | |
| ATAGCAATCAAAGCTCCGCA+TGG | + | 10676:3764-3783 | MS.gene41083:CDS | 45.0% | |
| CAAAAGTCAAGTAACAGCCC+TGG | + | 10676:1169-1188 | MS.gene41083:CDS | 45.0% | |
| CAGAAGACCTGCAAAGTGAA+CGG | + | 10676:2734-2753 | MS.gene41083:intron | 45.0% | |
| CCAAAATCCCCAGTATGAAG+TGG | - | 10676:4414-4433 | None:intergenic | 45.0% | |
| CCAACACCTATCTCAAATGC+TGG | + | 10676:1292-1311 | MS.gene41083:CDS | 45.0% | |
| CCAACATGAGGGAAAGAAAG+AGG | + | 10676:2919-2938 | MS.gene41083:intron | 45.0% | |
| CCTCTTTCTTTCCCTCATGT+TGG | - | 10676:2922-2941 | None:intergenic | 45.0% | |
| CTATAAGCTGGGGTACAACA+AGG | - | 10676:1382-1401 | None:intergenic | 45.0% | |
| GCACTCAACATTTAACGGCT+CGG | + | 10676:2147-2166 | MS.gene41083:intron | 45.0% | |
| GCATGGGGATTATGTGAGAT+GGG | - | 10676:2898-2917 | None:intergenic | 45.0% | |
| GGAAGTTGACAACCTTTCTC+TGG | + | 10676:3280-3299 | MS.gene41083:CDS | 45.0% | |
| GGAATTGAATCTTCTACGCC+TGG | + | 10676:1971-1990 | MS.gene41083:CDS | 45.0% | |
| TAACCCGAAGATCAGTACCA+GGG | + | 10676:2855-2874 | MS.gene41083:intron | 45.0% | |
| TACATTACCTCCTCAAGCTC+AGG | + | 10676:2519-2538 | MS.gene41083:intron | 45.0% | |
| TCTGCGGCATGCATTTGTAT+TGG | - | 10676:2671-2690 | None:intergenic | 45.0% | |
| TCTTGAGACCTATTGACACC+TGG | + | 10676:2047-2066 | MS.gene41083:intron | 45.0% | |
| TGAAGCAAGAGGTAAGCTTG+CGG | - | 10676:4192-4211 | None:intergenic | 45.0% | |
| TGAGCTAGTGGTGGTTATTC+AGG | - | 10676:2400-2419 | None:intergenic | 45.0% | |
| TGATTCATAGGCAGTACCCT+GGG | + | 10676:2547-2566 | MS.gene41083:intron | 45.0% | |
| TTGATTCATAGGCAGTACCC+TGG | + | 10676:2546-2565 | MS.gene41083:intron | 45.0% | |
| TTTCCCTCATGTTGGAGCAT+GGG | - | 10676:2914-2933 | None:intergenic | 45.0% | |
| TTTGTCTGCAAAAGGGGGAA+GGG | + | 10676:1228-1247 | MS.gene41083:CDS | 45.0% | |
| ! | ATCTTCTACGCCTGGTAATG+TGG | + | 10676:1979-1998 | MS.gene41083:CDS | 45.0% |
| ! | CCACTTCATACTGGGGATTT+TGG | + | 10676:4411-4430 | MS.gene41083:intron | 45.0% |
| ! | CCAGCATTTGAGATAGGTGT+TGG | - | 10676:1295-1314 | None:intergenic | 45.0% |
| ! | TAGGTTCCTTTTTGTGACCG+AGG | + | 10676:3572-3591 | MS.gene41083:intron | 45.0% |
| !! | AAGTCAAGGGCATCCAAAGA+AGG | + | 10676:1256-1275 | MS.gene41083:CDS | 45.0% |
| !! | AGTACCCTGGTACTGATCTT+CGG | - | 10676:2862-2881 | None:intergenic | 45.0% |
| !! | CTCGAGAGCATTTCAAAGTC+AGG | - | 10676:4771-4790 | None:intergenic | 45.0% |
| !! | CTGACTTTGAAATGCTCTCG+AGG | + | 10676:4769-4788 | MS.gene41083:CDS | 45.0% |
| !! | GCATTTGAGATAGGTGTTGG+AGG | - | 10676:1292-1311 | None:intergenic | 45.0% |
| !! | GTTTCACAAGAGTTTGCTGG+GGG | + | 10676:4323-4342 | MS.gene41083:CDS | 45.0% |
| !! | TTAGGGTTAGCTACAGTCGA+TGG | - | 10676:4828-4847 | None:intergenic | 45.0% |
| !! | TTGTGGCTTTGTCTTGCAGT+CGG | + | 10676:3259-3278 | MS.gene41083:intron | 45.0% |
| AACTCACCTGGAAGCAAGGT+AGG | - | 10676:3611-3630 | None:intergenic | 50.0% | |
| AAGCAAGAGGTAAGCTTGCG+GGG | - | 10676:4190-4209 | None:intergenic | 50.0% | |
| AATCAACCACCCTGAGCTTG+AGG | - | 10676:2532-2551 | None:intergenic | 50.0% | |
| AATCCCCATGCTCCAACATG+AGG | + | 10676:2907-2926 | MS.gene41083:intron | 50.0% | |
| ACCTGCTGAATGCAGTGGAA+AGG | + | 10676:4250-4269 | MS.gene41083:CDS | 50.0% | |
| ACTTCCAAGGTGGTTCCATG+CGG | - | 10676:3782-3801 | None:intergenic | 50.0% | |
| AGGATCAGGAACTTCCAAGG+TGG | - | 10676:3792-3811 | None:intergenic | 50.0% | |
| ATCCCCAGTATGAAGTGGAG+GGG | - | 10676:4409-4428 | None:intergenic | 50.0% | |
| ATCCCCATGCTCCAACATGA+GGG | + | 10676:2908-2927 | MS.gene41083:intron | 50.0% | |
| ATGGTACCTGCTGAATGCAG+TGG | + | 10676:4245-4264 | MS.gene41083:CDS | 50.0% | |
| CAATTCCTCTGCATGCCACA+AGG | - | 10676:1958-1977 | None:intergenic | 50.0% | |
| CGTCAACGGCCTAATGCATA+TGG | - | 10676:3904-3923 | None:intergenic | 50.0% | |
| CTAACCCGAAGATCAGTACC+AGG | + | 10676:2854-2873 | MS.gene41083:intron | 50.0% | |
| CTATGACCCGTTCACTTTGC+AGG | - | 10676:2744-2763 | None:intergenic | 50.0% | |
| CTCAGGATCAGGAACTTCCA+AGG | - | 10676:3795-3814 | None:intergenic | 50.0% | |
| CTGCAAAGTGAACGGGTCAT+AGG | + | 10676:2742-2761 | MS.gene41083:intron | 50.0% | |
| CTTGGAAGTTCCTGATCCTG+AGG | + | 10676:3793-3812 | MS.gene41083:CDS | 50.0% | |
| CTTTCCCTCATGTTGGAGCA+TGG | - | 10676:2915-2934 | None:intergenic | 50.0% | |
| CTTTGTCTGCAAAAGGGGGA+AGG | + | 10676:1227-1246 | MS.gene41083:CDS | 50.0% | |
| GAAGCAAGAGGTAAGCTTGC+GGG | - | 10676:4191-4210 | None:intergenic | 50.0% | |
| GACCCTGAACTTGAAGCAAG+AGG | - | 10676:4203-4222 | None:intergenic | 50.0% | |
| GACTGCAAGACAAAGCCACA+AGG | - | 10676:3260-3279 | None:intergenic | 50.0% | |
| GGGAAGGGCAAACAAGTCAA+GGG | + | 10676:1243-1262 | MS.gene41083:CDS | 50.0% | |
| GTCTCTGCTCTTCCAGAGAA+AGG | - | 10676:3295-3314 | None:intergenic | 50.0% | |
| TAACCACCACTAGCTCACTG+AGG | + | 10676:2403-2422 | MS.gene41083:intron | 50.0% | |
| TCAAACCTTGTGGCATGCAG+AGG | + | 10676:1950-1969 | MS.gene41083:intron | 50.0% | |
| TCATAACGACAGCTACCAGC+AGG | - | 10676:1442-1461 | None:intergenic | 50.0% | |
| TCCTTTCCACTGCATTCAGC+AGG | - | 10676:4254-4273 | None:intergenic | 50.0% | |
| TCTCCGCTGTAGTTCGTCAA+CGG | - | 10676:3918-3937 | None:intergenic | 50.0% | |
| TGACAGCCGTTCTACTTCTG+CGG | - | 10676:2687-2706 | None:intergenic | 50.0% | |
| TGAGAAGAGAGCAGAGCTTG+AGG | - | 10676:4284-4303 | None:intergenic | 50.0% | |
| TGCATGCCGCAGAAGTAGAA+CGG | + | 10676:2678-2697 | MS.gene41083:intron | 50.0% | |
| TGCTTTGTCCTCCTTCCAGA+AGG | + | 10676:3497-3516 | MS.gene41083:intron | 50.0% | |
| TTCCCCCTCCACTTCATACT+GGG | + | 10676:4403-4422 | MS.gene41083:intron | 50.0% | |
| TTCCCTCATGTTGGAGCATG+GGG | - | 10676:2913-2932 | None:intergenic | 50.0% | |
| TTTGAGCCTCAGTGAGCTAG+TGG | - | 10676:2412-2431 | None:intergenic | 50.0% | |
| ! | CTTCCCCCTTTTGCAGACAA+AGG | - | 10676:1229-1248 | None:intergenic | 50.0% |
| ! | GCTCAGGGTGGTTGATTCAT+AGG | + | 10676:2535-2554 | MS.gene41083:intron | 50.0% |
| ! | TCTACGCCTGGTAATGTGGA+TGG | + | 10676:1983-2002 | MS.gene41083:CDS | 50.0% |
| ! | TTAACGGCTCGGACTCTTGT+TGG | + | 10676:2158-2177 | MS.gene41083:intron | 50.0% |
| !! | GGTACTGATCTTCGGGTTAG+TGG | - | 10676:2854-2873 | None:intergenic | 50.0% |
| !! | GTACCCTGGTACTGATCTTC+GGG | - | 10676:2861-2880 | None:intergenic | 50.0% |
| !! | TTAATTGGCTGCTGGCCTTG+TGG | + | 10676:3242-3261 | MS.gene41083:intron | 50.0% |
| AGCAAGAGGTAAGCTTGCGG+GGG | - | 10676:4189-4208 | None:intergenic | 55.0% | |
| AGGCCGTTGACGAACTACAG+CGG | + | 10676:3912-3931 | MS.gene41083:intron | 55.0% | |
| CCATTTGCTCAAGCGTGCTG+AGG | + | 10676:1610-1629 | MS.gene41083:CDS | 55.0% | |
| CCTCAGCACGCTTGAGCAAA+TGG | - | 10676:1613-1632 | None:intergenic | 55.0% | |
| GGGGAAGGGCAAACAAGTCA+AGG | + | 10676:1242-1261 | MS.gene41083:CDS | 55.0% | |
| GTTCCCCCTCCACTTCATAC+TGG | + | 10676:4402-4421 | MS.gene41083:intron | 55.0% | |
| TAAGGGCCTACCTTGCTTCC+AGG | + | 10676:3602-3621 | MS.gene41083:CDS | 55.0% | |
| TCCCCAGTATGAAGTGGAGG+GGG | - | 10676:4408-4427 | None:intergenic | 55.0% | |
| TCCCCCTCCACTTCATACTG+GGG | + | 10676:4404-4423 | MS.gene41083:intron | 55.0% | |
| TTACCTCCTCAAGCTCAGGG+TGG | + | 10676:2523-2542 | MS.gene41083:intron | 55.0% | |
| TTGCTCAAGCGTGCTGAGGA+TGG | + | 10676:1614-1633 | MS.gene41083:CDS | 55.0% | |
| AACTCCATCGCCGGGACTTG+CGG | + | 10676:4797-4816 | MS.gene41083:CDS | 60.0% | |
| AGCAGGAGTGAGCGGAGAAG+GGG | - | 10676:1425-1444 | None:intergenic | 60.0% | |
| AGCTCCGCATGGAACCACCT+TGG | + | 10676:3775-3794 | MS.gene41083:CDS | 60.0% | |
| AGGCCACAAACTCCATCGCC+GGG | + | 10676:4789-4808 | MS.gene41083:CDS | 60.0% | |
| AGTCCCGGCGATGGAGTTTG+TGG | - | 10676:4795-4814 | None:intergenic | 60.0% | |
| CAACCACCCTGAGCTTGAGG+AGG | - | 10676:2529-2548 | None:intergenic | 60.0% | |
| CAGCAGGAGTGAGCGGAGAA+GGG | - | 10676:1426-1445 | None:intergenic | 60.0% | |
| CAGCTACCAGCAGGAGTGAG+CGG | - | 10676:1433-1452 | None:intergenic | 60.0% | |
| GAGCCTCAGTGAGCTAGTGG+TGG | - | 10676:2409-2428 | None:intergenic | 60.0% | |
| GAGGCCACAAACTCCATCGC+CGG | + | 10676:4788-4807 | MS.gene41083:CDS | 60.0% | |
| GATGGTGCTTCCGCAAGTCC+CGG | - | 10676:4810-4829 | None:intergenic | 60.0% | |
| GCAAGAGGTAAGCTTGCGGG+GGG | - | 10676:4188-4207 | None:intergenic | 60.0% | |
| CCAGCAGGAGTGAGCGGAGA+AGG | - | 10676:1427-1446 | None:intergenic | 65.0% | |
| CCTTCTCCGCTCACTCCTGC+TGG | + | 10676:1424-1443 | MS.gene41083:CDS | 65.0% | |
| GTGGAGGGGGAACCCTCACA+AGG | - | 10676:4395-4414 | None:intergenic | 65.0% | |
| GCTTCCGCAAGTCCCGGCGA+TGG | - | 10676:4804-4823 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| 10676 | gene | 1145 | 4857 | 1145 | ID=MS.gene41083 |
| 10676 | mRNA | 1145 | 4857 | 1145 | ID=MS.gene41083.t1;Parent=MS.gene41083 |
| 10676 | exon | 1145 | 1313 | 1145 | ID=MS.gene41083.t1.exon1;Parent=MS.gene41083.t1 |
| 10676 | CDS | 1145 | 1313 | 1145 | ID=cds.MS.gene41083.t1;Parent=MS.gene41083.t1 |
| 10676 | exon | 1419 | 1472 | 1419 | ID=MS.gene41083.t1.exon2;Parent=MS.gene41083.t1 |
| 10676 | CDS | 1419 | 1472 | 1419 | ID=cds.MS.gene41083.t1;Parent=MS.gene41083.t1 |
| 10676 | exon | 1588 | 1673 | 1588 | ID=MS.gene41083.t1.exon3;Parent=MS.gene41083.t1 |
| 10676 | CDS | 1588 | 1673 | 1588 | ID=cds.MS.gene41083.t1;Parent=MS.gene41083.t1 |
| 10676 | exon | 1764 | 1852 | 1764 | ID=MS.gene41083.t1.exon4;Parent=MS.gene41083.t1 |
| 10676 | CDS | 1764 | 1852 | 1764 | ID=cds.MS.gene41083.t1;Parent=MS.gene41083.t1 |
| 10676 | exon | 1970 | 2024 | 1970 | ID=MS.gene41083.t1.exon5;Parent=MS.gene41083.t1 |
| 10676 | CDS | 1970 | 2024 | 1970 | ID=cds.MS.gene41083.t1;Parent=MS.gene41083.t1 |
| 10676 | exon | 3278 | 3330 | 3278 | ID=MS.gene41083.t1.exon6;Parent=MS.gene41083.t1 |
| 10676 | CDS | 3278 | 3330 | 3278 | ID=cds.MS.gene41083.t1;Parent=MS.gene41083.t1 |
| 10676 | exon | 3414 | 3464 | 3414 | ID=MS.gene41083.t1.exon7;Parent=MS.gene41083.t1 |
| 10676 | CDS | 3414 | 3464 | 3414 | ID=cds.MS.gene41083.t1;Parent=MS.gene41083.t1 |
| 10676 | exon | 3575 | 3623 | 3575 | ID=MS.gene41083.t1.exon8;Parent=MS.gene41083.t1 |
| 10676 | CDS | 3575 | 3623 | 3575 | ID=cds.MS.gene41083.t1;Parent=MS.gene41083.t1 |
| 10676 | exon | 3752 | 3817 | 3752 | ID=MS.gene41083.t1.exon9;Parent=MS.gene41083.t1 |
| 10676 | CDS | 3752 | 3817 | 3752 | ID=cds.MS.gene41083.t1;Parent=MS.gene41083.t1 |
| 10676 | exon | 3914 | 3990 | 3914 | ID=MS.gene41083.t1.exon10;Parent=MS.gene41083.t1 |
| 10676 | CDS | 3914 | 3990 | 3914 | ID=cds.MS.gene41083.t1;Parent=MS.gene41083.t1 |
| 10676 | exon | 4145 | 4376 | 4145 | ID=MS.gene41083.t1.exon11;Parent=MS.gene41083.t1 |
| 10676 | CDS | 4145 | 4376 | 4145 | ID=cds.MS.gene41083.t1;Parent=MS.gene41083.t1 |
| 10676 | exon | 4558 | 4624 | 4558 | ID=MS.gene41083.t1.exon12;Parent=MS.gene41083.t1 |
| 10676 | CDS | 4558 | 4624 | 4558 | ID=cds.MS.gene41083.t1;Parent=MS.gene41083.t1 |
| 10676 | exon | 4733 | 4857 | 4733 | ID=MS.gene41083.t1.exon13;Parent=MS.gene41083.t1 |
| 10676 | CDS | 4733 | 4857 | 4733 | ID=cds.MS.gene41083.t1;Parent=MS.gene41083.t1 |
| Gene Sequence |
| Protein sequence |
