Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene055646.t1 | XP_003592452.2 | 98.3 | 464 | 7 | 1 | 1 | 464 | 1 | 463 | 7.10E-255 | 889.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene055646.t1 | Q9FNY0 | 55.9 | 474 | 166 | 11 | 16 | 464 | 30 | 485 | 3.6e-130 | 466.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene055646.t1 | G7IE33 | 98.3 | 464 | 7 | 1 | 1 | 464 | 1 | 463 | 5.1e-255 | 889.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene055646.t1 | TF | E2F-DP |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene055644 | MS.gene055646 | 0.849534 | 3.04E-60 | -1.69E-46 |
| MS.gene055646 | MS.gene41081 | 0.994186 | 3.06E-205 | -1.69E-46 |
| MS.gene055646 | MS.gene41083 | 0.965229 | 2.47E-124 | -1.69E-46 |
PPI:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene055646.t1 | MTR_1g105110 | 98.276 | 464 | 7 | 1 | 1 | 464 | 1 | 463 | 0.0 | 934 |
| MS.gene055646.t1 | MTR_4g052000 | 59.234 | 444 | 169 | 8 | 25 | 461 | 19 | 457 | 2.03e-174 | 497 |
| MS.gene055646.t1 | MTR_3g113800 | 54.260 | 223 | 99 | 1 | 127 | 349 | 89 | 308 | 5.07e-72 | 232 |
| MS.gene055646.t1 | MTR_3g113800 | 58.000 | 200 | 81 | 1 | 127 | 326 | 89 | 285 | 5.10e-70 | 225 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene055646.t1 | AT2G36010 | 56.959 | 467 | 159 | 11 | 16 | 458 | 30 | 478 | 1.39e-172 | 493 |
| MS.gene055646.t1 | AT2G36010 | 56.716 | 469 | 159 | 12 | 16 | 458 | 30 | 480 | 1.30e-170 | 489 |
| MS.gene055646.t1 | AT5G22220 | 53.092 | 469 | 179 | 14 | 22 | 461 | 10 | 466 | 1.19e-143 | 419 |
| MS.gene055646.t1 | AT5G22220 | 52.790 | 466 | 182 | 13 | 22 | 461 | 10 | 463 | 5.74e-141 | 412 |
| MS.gene055646.t1 | AT2G36010 | 46.332 | 518 | 165 | 14 | 16 | 458 | 30 | 509 | 2.86e-133 | 394 |
| MS.gene055646.t1 | AT1G47870 | 47.003 | 317 | 118 | 7 | 105 | 420 | 123 | 390 | 2.50e-79 | 252 |
| MS.gene055646.t1 | AT1G47870 | 47.003 | 317 | 118 | 7 | 105 | 420 | 124 | 391 | 2.75e-79 | 252 |
| MS.gene055646.t1 | AT5G14960 | 41.304 | 92 | 49 | 1 | 136 | 227 | 6 | 92 | 1.80e-12 | 68.9 |
| MS.gene055646.t1 | AT3G48160 | 45.205 | 73 | 39 | 1 | 143 | 215 | 34 | 105 | 3.98e-11 | 65.1 |
| MS.gene055646.t1 | AT3G48160 | 45.205 | 73 | 39 | 1 | 143 | 215 | 34 | 105 | 4.11e-11 | 65.1 |
Find 121 sgRNAs with CRISPR-Local
Find 329 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTTCGCTGCTGTTGATTCT+AGG | 0.183439 | 1.4:+48408892 | MS.gene055646:CDS |
| TGTAGAATGATGCTGATTAT+TGG | 0.219679 | 1.4:+48413459 | MS.gene055646:intron |
| AGGACATGATTTGCCTTCTT+TGG | 0.234385 | 1.4:-48410173 | None:intergenic |
| TTACCTCTTGCTTCAAGTTC+AGG | 0.236533 | 1.4:+48413103 | MS.gene055646:CDS |
| GAGAAATTTGAAGAGATTAA+TGG | 0.237066 | 1.4:+48413061 | MS.gene055646:CDS |
| AATCAAAATCATCTCTGATT+AGG | 0.254900 | 1.4:-48413749 | None:intergenic |
| TGTGACCGAGGAAGATATTA+AGG | 0.256644 | 1.4:+48412488 | MS.gene055646:CDS |
| CAATTGATGTCTACCTTATC+AGG | 0.299411 | 1.4:+48412873 | MS.gene055646:CDS |
| ATATGACATAACTAATGTTT+TGG | 0.312982 | 1.4:+48410685 | MS.gene055646:CDS |
| ATCAAAATCATCTCTGATTA+GGG | 0.322568 | 1.4:-48413748 | None:intergenic |
| TATCTTCCTCGGTCACAAAA+AGG | 0.345600 | 1.4:-48412482 | None:intergenic |
| TAAGGGCCTACCTTGCTTCC+AGG | 0.358343 | 1.4:+48412506 | MS.gene055646:CDS |
| AAAACTCCTTTGTCTGCAAA+AGG | 0.367786 | 1.4:+48410124 | MS.gene055646:CDS |
| TGGTGATATCTCTTTGCTTA+AGG | 0.368188 | 1.4:+48410907 | MS.gene055646:CDS |
| GAAGCAAGAGGTAAGCTTGC+GGG | 0.386616 | 1.4:-48413094 | None:intergenic |
| CTGATAAGGTAGACATCAAT+TGG | 0.387115 | 1.4:-48412872 | None:intergenic |
| TTCATTACATTAGTGTATCC+AGG | 0.390006 | 1.4:-48410091 | None:intergenic |
| ATATCAAGAACAGAATATAT+TGG | 0.392044 | 1.4:+48410732 | MS.gene055646:CDS |
| CCAGCAGGAGTGAGCGGAGA+AGG | 0.392492 | 1.4:-48410328 | None:intergenic |
| CCTCAGCACGCTTGAGCAAA+TGG | 0.395797 | 1.4:-48410514 | None:intergenic |
| TTCCCTAAACTTACTTCCTC+AGG | 0.398706 | 1.4:-48412713 | None:intergenic |
| TACCTCTTGCTTCAAGTTCA+GGG | 0.401939 | 1.4:+48413104 | MS.gene055646:CDS |
| GTCGGAAGGTCCAGCGTTAC+CGG | 0.403176 | 1.4:-48408763 | None:intergenic |
| AATGTTTCACAAGAGTTTGC+TGG | 0.409766 | 1.4:+48413226 | MS.gene055646:CDS |
| TTCTGACCAGCATTTGAGAT+AGG | 0.420653 | 1.4:-48410202 | None:intergenic |
| GGAAGTTGACAACCTTTCTC+TGG | 0.430841 | 1.4:+48412184 | MS.gene055646:CDS |
| TAAAGCAGCAGAAACTTTGC+AGG | 0.430868 | 1.4:+48410556 | MS.gene055646:CDS |
| AAACTCCTTTGTCTGCAAAA+GGG | 0.431635 | 1.4:+48410125 | MS.gene055646:CDS |
| ATCTGTGCTCCGGTCGGCAT+CGG | 0.435761 | 1.4:-48408795 | None:intergenic |
| GGAGATATAGAATCATTCTA+AGG | 0.456891 | 1.4:+48412837 | MS.gene055646:CDS |
| CTCGAGAGCATTTCAAAGTC+AGG | 0.458107 | 1.4:-48413674 | None:intergenic |
| TGTCGTTATGACAGTTCCTT+AGG | 0.460009 | 1.4:+48410355 | MS.gene055646:CDS |
| TCCTTTCCACTGCATTCAGC+AGG | 0.460324 | 1.4:-48413157 | None:intergenic |
| GTGACCGAGGAAGATATTAA+GGG | 0.460410 | 1.4:+48412489 | MS.gene055646:CDS |
| GCATAACAGCTAATGTTGAT+TGG | 0.461803 | 1.4:+48413630 | MS.gene055646:intron |
| CCTTCTCCGCTCACTCCTGC+TGG | 0.469787 | 1.4:+48410328 | MS.gene055646:CDS |
| GCAAGTAGTTATACCTGATA+AGG | 0.470864 | 1.4:-48412886 | None:intergenic |
| ATGTTTCACAAGAGTTTGCT+GGG | 0.474909 | 1.4:+48413227 | MS.gene055646:CDS |
| TGCCGACCGGAGCACAGATT+CGG | 0.476300 | 1.4:+48408799 | MS.gene055646:CDS |
| ATCATTCTAAGGAGCACAAT+GGG | 0.480097 | 1.4:+48412848 | MS.gene055646:CDS |
| GGGGAAGGGCAAACAAGTCA+AGG | 0.482335 | 1.4:+48410146 | MS.gene055646:CDS |
| AAACTTACTTCCTCAGGATC+AGG | 0.482688 | 1.4:-48412707 | None:intergenic |
| TACTCATCAGTCGGTGCAAA+CGG | 0.485816 | 1.4:-48408864 | None:intergenic |
| TGAGCAACAAGTGACAGAAA+TGG | 0.489280 | 1.4:+48413132 | MS.gene055646:CDS |
| GTCTCTGCTCTTCCAGAGAA+AGG | 0.490737 | 1.4:-48412196 | None:intergenic |
| TATTGGCTTCTATCAGATGC+TGG | 0.491589 | 1.4:+48413476 | MS.gene055646:CDS |
| AGTCCCGGCGATGGAGTTTG+TGG | 0.503718 | 1.4:-48413698 | None:intergenic |
| AGCCGTTATTGTTAGATCTC+CGG | 0.504106 | 1.4:+48408938 | MS.gene055646:CDS |
| CCAGCATTTGAGATAGGTGT+TGG | 0.506282 | 1.4:-48410196 | None:intergenic |
| AACTCCTTTGTCTGCAAAAG+GGG | 0.506592 | 1.4:+48410126 | MS.gene055646:CDS |
| GGAATTGAATCTTCTACGCC+TGG | 0.513959 | 1.4:+48410875 | MS.gene055646:CDS |
| AAGGTCATAAAGCGGAAGAA+TGG | 0.515250 | 1.4:+48410025 | MS.gene055646:intron |
| AACTCCATCGCCGGGACTTG+CGG | 0.515372 | 1.4:+48413703 | MS.gene055646:CDS |
| CAGCAGGAGTGAGCGGAGAA+GGG | 0.521252 | 1.4:-48410327 | None:intergenic |
| TGAGAAGAGAGCAGAGCTTG+AGG | 0.521585 | 1.4:-48413187 | None:intergenic |
| CGTGGCTCGCCGATGCCGAC+CGG | 0.525876 | 1.4:+48408786 | MS.gene055646:CDS |
| GGCCGAATCTGTGCTCCGGT+CGG | 0.529279 | 1.4:-48408801 | None:intergenic |
| CGGCATCGGCGAGCCACGGT+CGG | 0.533060 | 1.4:-48408781 | None:intergenic |
| GATGGTGCTTCCGCAAGTCC+CGG | 0.535364 | 1.4:-48413713 | None:intergenic |
| AGGCCACAAACTCCATCGCC+GGG | 0.535755 | 1.4:+48413695 | MS.gene055646:CDS |
| AAGTCAAGGGCATCCAAAGA+AGG | 0.536537 | 1.4:+48410160 | MS.gene055646:CDS |
| GCTTCCGCAAGTCCCGGCGA+TGG | 0.539022 | 1.4:-48413707 | None:intergenic |
| CGGTCGGCATCGGCGAGCCA+CGG | 0.539391 | 1.4:-48408785 | None:intergenic |
| CACCGGAGATCTAACAATAA+CGG | 0.545488 | 1.4:-48408940 | None:intergenic |
| ATCGGCGAGCCACGGTCGGA+AGG | 0.546657 | 1.4:-48408777 | None:intergenic |
| CTATACTATAGGTGCAAAAG+AGG | 0.547054 | 1.4:+48410657 | MS.gene055646:intron |
| GAGGCCACAAACTCCATCGC+CGG | 0.547101 | 1.4:+48413694 | MS.gene055646:CDS |
| AAGCAAGAGGTAAGCTTGCG+GGG | 0.551818 | 1.4:-48413093 | None:intergenic |
| AGCAGGAGTGAGCGGAGAAG+GGG | 0.552395 | 1.4:-48410326 | None:intergenic |
| TTGCTCAAGCGTGCTGAGGA+TGG | 0.554722 | 1.4:+48410518 | MS.gene055646:CDS |
| CAAAAGTCAAGTAACAGCCC+TGG | 0.555813 | 1.4:+48410073 | MS.gene055646:CDS |
| ATCTTCTACGCCTGGTAATG+TGG | 0.558876 | 1.4:+48410883 | MS.gene055646:CDS |
| AGAGACTAGATGATCAGATA+AGG | 0.559999 | 1.4:+48412213 | MS.gene055646:CDS |
| CGGCGGCCGAATCTGTGCTC+CGG | 0.564361 | 1.4:-48408805 | None:intergenic |
| TCATAACGACAGCTACCAGC+AGG | 0.570121 | 1.4:-48410343 | None:intergenic |
| TAGGCCCTTAATATCTTCCT+CGG | 0.571156 | 1.4:-48412493 | None:intergenic |
| CCAACACCTATCTCAAATGC+TGG | 0.572738 | 1.4:+48410196 | MS.gene055646:CDS |
| GACCCTGAACTTGAAGCAAG+AGG | 0.573741 | 1.4:-48413106 | None:intergenic |
| GCATTTGAGATAGGTGTTGG+AGG | 0.574157 | 1.4:-48410193 | None:intergenic |
| TCATTACATTAGTGTATCCA+GGG | 0.578943 | 1.4:-48410090 | None:intergenic |
| ACAGCTAATGTTGATTGGAG+TGG | 0.580563 | 1.4:+48413635 | MS.gene055646:intron |
| GAGTTAGCATAACAGATATG+TGG | 0.583522 | 1.4:+48413498 | MS.gene055646:CDS |
| AAAGAACTCACCTGGAAGCA+AGG | 0.584852 | 1.4:-48412516 | None:intergenic |
| ATATCACCATCCACATTACC+AGG | 0.586810 | 1.4:-48410893 | None:intergenic |
| ATACTTACATCAGCATCTGA+AGG | 0.592246 | 1.4:-48413268 | None:intergenic |
| TACTATAGGTGCAAAAGAGG+AGG | 0.592536 | 1.4:+48410660 | MS.gene055646:intron |
| AAAGTATGATACTCATCAGT+CGG | 0.596002 | 1.4:-48408873 | None:intergenic |
| AACGCTGGACCTTCCGACCG+TGG | 0.596010 | 1.4:+48408768 | MS.gene055646:CDS |
| AACGCAAGATGACGCTTCAA+CGG | 0.597488 | 1.4:-48408825 | None:intergenic |
| AACGGCTTCATTGACATGAT+CGG | 0.597493 | 1.4:-48408922 | None:intergenic |
| CAGCTACCAGCAGGAGTGAG+CGG | 0.598273 | 1.4:-48410334 | None:intergenic |
| CTCAGGATCAGGAACTTCCA+AGG | 0.601233 | 1.4:-48412696 | None:intergenic |
| TCTACGCCTGGTAATGTGGA+TGG | 0.603037 | 1.4:+48410887 | MS.gene055646:CDS |
| TCCGCCGTAACCGTAATGTC+CGG | 0.603732 | 1.4:+48408744 | None:intergenic |
| CTTGGAAGTTCCTGATCCTG+AGG | 0.604439 | 1.4:+48412697 | MS.gene055646:CDS |
| AGCTCCGCATGGAACCACCT+TGG | 0.605657 | 1.4:+48412679 | MS.gene055646:CDS |
| AATGGAATGAATGAAAGTGA+AGG | 0.612614 | 1.4:+48410043 | MS.gene055646:CDS |
| CTGACTTTGAAATGCTCTCG+AGG | 0.615106 | 1.4:+48413675 | MS.gene055646:CDS |
| AACTCACCTGGAAGCAAGGT+AGG | 0.616174 | 1.4:-48412512 | None:intergenic |
| GCAAGATGACGCTTCAACGG+CGG | 0.616413 | 1.4:-48408822 | None:intergenic |
| TACTTACATCAGCATCTGAA+GGG | 0.619198 | 1.4:-48413267 | None:intergenic |
| TCTCCGCTGTAGTTCGTCAA+CGG | 0.627564 | 1.4:-48412819 | None:intergenic |
| CCATTTGCTCAAGCGTGCTG+AGG | 0.631281 | 1.4:+48410514 | MS.gene055646:CDS |
| ATAGCAATCAAAGCTCCGCA+TGG | 0.631816 | 1.4:+48412668 | MS.gene055646:CDS |
| AATCATTCTAAGGAGCACAA+TGG | 0.638536 | 1.4:+48412847 | MS.gene055646:CDS |
| AGCAAGAGGTAAGCTTGCGG+GGG | 0.640114 | 1.4:-48413092 | None:intergenic |
| GTTTCACAAGAGTTTGCTGG+GGG | 0.641606 | 1.4:+48413229 | MS.gene055646:CDS |
| ACTCCTTTGTCTGCAAAAGG+GGG | 0.643497 | 1.4:+48410127 | MS.gene055646:CDS |
| ACCTGCTGAATGCAGTGGAA+AGG | 0.654494 | 1.4:+48413156 | MS.gene055646:CDS |
| GCAAGAGGTAAGCTTGCGGG+GGG | 0.656380 | 1.4:-48413091 | None:intergenic |
| GGGAAGGGCAAACAAGTCAA+GGG | 0.657296 | 1.4:+48410147 | MS.gene055646:CDS |
| TGAAGCAAGAGGTAAGCTTG+CGG | 0.662777 | 1.4:-48413095 | None:intergenic |
| ATGGTACCTGCTGAATGCAG+TGG | 0.669987 | 1.4:+48413151 | MS.gene055646:CDS |
| TTAGGGTTAGCTACAGTCGA+TGG | 0.674010 | 1.4:-48413731 | None:intergenic |
| TCATCAGTCGGTGCAAACGG+TGG | 0.676716 | 1.4:-48408861 | None:intergenic |
| AGGCCGTTGACGAACTACAG+CGG | 0.677542 | 1.4:+48412816 | MS.gene055646:intron |
| TGTTTCACAAGAGTTTGCTG+GGG | 0.692916 | 1.4:+48413228 | MS.gene055646:CDS |
| TAATGTTGATTGGAGTGGAG+TGG | 0.694763 | 1.4:+48413640 | MS.gene055646:CDS |
| ACTTCCAAGGTGGTTCCATG+CGG | 0.714996 | 1.4:-48412683 | None:intergenic |
| GGTGGTGTAAGGTCATAAAG+CGG | 0.723032 | 1.4:+48410017 | MS.gene055646:intron |
| AGGATCAGGAACTTCCAAGG+TGG | 0.735853 | 1.4:-48412693 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTTCTTTTTAAATTATTAC+CGG | + | chr1.4:48409582-48409601 | MS.gene055646:intron | 10.0% |
| !!! | TAGAAAAAATGTATATATTT+TGG | - | chr1.4:48410786-48410805 | None:intergenic | 10.0% |
| !!! | TTTTTTTAGTATTTAATGAT+TGG | + | chr1.4:48413399-48413418 | MS.gene055646:intron | 10.0% |
| !!! | AAAATCTTTTGTATAGAATA+CGG | - | chr1.4:48410583-48410602 | None:intergenic | 15.0% |
| !! | AAATGAATCTAAGAACTAAA+TGG | - | chr1.4:48412380-48412399 | None:intergenic | 20.0% |
| !! | AAGTCATTCTAATTAATTTC+TGG | - | chr1.4:48412046-48412065 | None:intergenic | 20.0% |
| !! | AATGAATCTAAGAACTAAAT+GGG | - | chr1.4:48412379-48412398 | None:intergenic | 20.0% |
| !! | AATTAATTAGAATGACTTAG+TGG | + | chr1.4:48412048-48412067 | MS.gene055646:intron | 20.0% |
| !! | AGAAAAAGTAACAGATATAT+TGG | - | chr1.4:48410608-48410627 | None:intergenic | 20.0% |
| !! | ATATCAAGAACAGAATATAT+TGG | + | chr1.4:48410732-48410751 | MS.gene055646:CDS | 20.0% |
| !! | CAACTTGGTTTAATTAAAAT+TGG | + | chr1.4:48409262-48409281 | MS.gene055646:intron | 20.0% |
| !! | TAGATAAATGGAAAGTTAAT+CGG | - | chr1.4:48410234-48410253 | None:intergenic | 20.0% |
| !! | TCAAAAATTCCAAAATTAAC+TGG | - | chr1.4:48413020-48413039 | None:intergenic | 20.0% |
| !! | TTAAAATTATTTCCTAACAC+TGG | + | chr1.4:48409230-48409249 | MS.gene055646:intron | 20.0% |
| !! | TTGGTTTAATTAAAATTGGA+GGG | + | chr1.4:48409266-48409285 | MS.gene055646:intron | 20.0% |
| !! | TTTAAATTCTCCTATACTAT+AGG | + | chr1.4:48410646-48410665 | MS.gene055646:intron | 20.0% |
| !!! | AACAATGTTGATAATACAAA+TGG | - | chr1.4:48412568-48412587 | None:intergenic | 20.0% |
| !!! | AGAAAAGCATTAAAACAAAA+AGG | - | chr1.4:48413538-48413557 | None:intergenic | 20.0% |
| !!! | ATATGACATAACTAATGTTT+TGG | + | chr1.4:48410685-48410704 | MS.gene055646:CDS | 20.0% |
| !!! | TTATTTTTTGTGGAAATAGT+TGG | + | chr1.4:48409094-48409113 | MS.gene055646:intron | 20.0% |
| !!! | TTGTTTTCTCATATTGATAA+GGG | + | chr1.4:48411188-48411207 | MS.gene055646:intron | 20.0% |
| !!! | TTTGTATTGATTAAACACTT+CGG | + | chr1.4:48413359-48413378 | MS.gene055646:intron | 20.0% |
| ! | AATACTAAAAAAACAACTGC+AGG | - | chr1.4:48413392-48413411 | None:intergenic | 25.0% |
| ! | AATATGTTGTGATAAGGATA+AGG | + | chr1.4:48411854-48411873 | MS.gene055646:intron | 25.0% |
| ! | ACCTAAAAGGAATTGAAAAT+TGG | - | chr1.4:48412461-48412480 | None:intergenic | 25.0% |
| ! | AGATAAATGGAAAGTTAATC+GGG | - | chr1.4:48410233-48410252 | None:intergenic | 25.0% |
| ! | AGGAGAATTTAAATTCATGT+AGG | - | chr1.4:48410639-48410658 | None:intergenic | 25.0% |
| ! | ATTGTATAACAATTAGTTCC+AGG | - | chr1.4:48410972-48410991 | None:intergenic | 25.0% |
| ! | CTTATTGTTTATGAACATGT+TGG | + | chr1.4:48409996-48410015 | MS.gene055646:intron | 25.0% |
| ! | CTTGGTTTAATTAAAATTGG+AGG | + | chr1.4:48409265-48409284 | MS.gene055646:intron | 25.0% |
| ! | GAGAAATTTGAAGAGATTAA+TGG | + | chr1.4:48413061-48413080 | MS.gene055646:CDS | 25.0% |
| ! | TACACTAATACATATCTAGA+AGG | - | chr1.4:48410423-48410442 | None:intergenic | 25.0% |
| ! | TGATAGCATCAATATAAACA+TGG | - | chr1.4:48411095-48411114 | None:intergenic | 25.0% |
| ! | TGATGCTATCAATATTGAAA+AGG | + | chr1.4:48411104-48411123 | MS.gene055646:intron | 25.0% |
| ! | TTGAACATAACGTAGATAAA+TGG | - | chr1.4:48410246-48410265 | None:intergenic | 25.0% |
| !! | AATAACAATACTTTTCCTTC+TGG | - | chr1.4:48412419-48412438 | None:intergenic | 25.0% |
| !! | AATTGTGTCGAAAACATTTT+CGG | + | chr1.4:48409335-48409354 | MS.gene055646:intron | 25.0% |
| !! | ACCAATTTTCAATTCCTTTT+AGG | + | chr1.4:48412457-48412476 | MS.gene055646:intron | 25.0% |
| !! | CTTTTGAACCATTATTAACA+GGG | + | chr1.4:48412297-48412316 | MS.gene055646:intron | 25.0% |
| !! | TAGATATTTGAAACTGAGTT+TGG | + | chr1.4:48411920-48411939 | MS.gene055646:intron | 25.0% |
| !! | TATGTATATCAAGTTGTTAG+AGG | + | chr1.4:48411972-48411991 | MS.gene055646:intron | 25.0% |
| !! | TGAAAAGGATTAGTAATGAA+AGG | + | chr1.4:48411119-48411138 | MS.gene055646:intron | 25.0% |
| !! | TGTATGATTAATTGCTACTT+TGG | + | chr1.4:48409887-48409906 | MS.gene055646:intron | 25.0% |
| !! | TTATGAACTCTTTTCATTTG+TGG | + | chr1.4:48409791-48409810 | MS.gene055646:intron | 25.0% |
| !!! | GTTGATAATACAAATGGAAA+AGG | - | chr1.4:48412562-48412581 | None:intergenic | 25.0% |
| !!! | GTTGTTTTCTCATATTGATA+AGG | + | chr1.4:48411187-48411206 | MS.gene055646:intron | 25.0% |
| !!! | GTTTTACATGCTTTTGATTT+TGG | + | chr1.4:48409123-48409142 | MS.gene055646:intron | 25.0% |
| !!! | TGCTTTTGATTTTGGTTTAT+CGG | + | chr1.4:48409131-48409150 | MS.gene055646:intron | 25.0% |
| !!! | TTGTTTTTGCATGTTGATAA+GGG | + | chr1.4:48411897-48411916 | MS.gene055646:intron | 25.0% |
| !!! | TTTGTTTTTGCATGTTGATA+AGG | + | chr1.4:48411896-48411915 | MS.gene055646:intron | 25.0% |
| AAAGGATAGTATCAATCTCT+TGG | + | chr1.4:48411137-48411156 | MS.gene055646:intron | 30.0% | |
| AAAGTATGATACTCATCAGT+CGG | - | chr1.4:48408876-48408895 | None:intergenic | 30.0% | |
| AACATTCTCCTCTAACATAT+GGG | - | chr1.4:48411693-48411712 | None:intergenic | 30.0% | |
| AACTTATACAAGAACTTCAC+AGG | + | chr1.4:48410470-48410489 | MS.gene055646:intron | 30.0% | |
| AATCTCAATAACAGCATGAA+AGG | - | chr1.4:48412598-48412617 | None:intergenic | 30.0% | |
| AATGGAATGAATGAAAGTGA+AGG | + | chr1.4:48410043-48410062 | MS.gene055646:CDS | 30.0% | |
| AATTCTTACATCAAACCTTG+TGG | + | chr1.4:48410844-48410863 | MS.gene055646:intron | 30.0% | |
| ACACACACACATCAATATAT+CGG | - | chr1.4:48409946-48409965 | None:intergenic | 30.0% | |
| ACATCAATATATCGGTGAAA+TGG | - | chr1.4:48409938-48409957 | None:intergenic | 30.0% | |
| ACTAAATGGGAAATTACTTC+TGG | - | chr1.4:48412366-48412385 | None:intergenic | 30.0% | |
| AGTATCAATCTCTTGGAATA+AGG | + | chr1.4:48411144-48411163 | MS.gene055646:intron | 30.0% | |
| AGTGTCAATATGTTGTGATA+AGG | + | chr1.4:48411848-48411867 | MS.gene055646:intron | 30.0% | |
| AGTTCATTAAGTCTAATGCT+TGG | + | chr1.4:48409465-48409484 | MS.gene055646:intron | 30.0% | |
| ATACATATCTAGAAGGTGAA+TGG | - | chr1.4:48410416-48410435 | None:intergenic | 30.0% | |
| ATTGCTTCCAAAATTACCTA+AGG | - | chr1.4:48410374-48410393 | None:intergenic | 30.0% | |
| ATTGTTTATGAACATGTTGG+TGG | + | chr1.4:48409999-48410018 | MS.gene055646:intron | 30.0% | |
| CAGCAAATAGACATTATAGT+TGG | - | chr1.4:48411032-48411051 | None:intergenic | 30.0% | |
| CTCTTCAAATTGACTGAAAA+CGG | - | chr1.4:48413044-48413063 | None:intergenic | 30.0% | |
| GATGATCAGATAAGGTTATA+TGG | + | chr1.4:48412221-48412240 | MS.gene055646:intron | 30.0% | |
| GGAGATATAGAATCATTCTA+AGG | + | chr1.4:48412837-48412856 | MS.gene055646:CDS | 30.0% | |
| GTATCAATCTCTTGGAATAA+GGG | + | chr1.4:48411145-48411164 | MS.gene055646:intron | 30.0% | |
| TACATATCTAGAAGGTGAAT+GGG | - | chr1.4:48410415-48410434 | None:intergenic | 30.0% | |
| TATAGTTTCTTATGGCATGT+AGG | + | chr1.4:48410301-48410320 | MS.gene055646:intron | 30.0% | |
| TCATTACATTAGTGTATCCA+GGG | - | chr1.4:48410093-48410112 | None:intergenic | 30.0% | |
| TGAATGTTGTAACTCAAACT+AGG | + | chr1.4:48411724-48411743 | MS.gene055646:intron | 30.0% | |
| TGATTATGTGCAAAAATGTG+TGG | + | chr1.4:48409643-48409662 | MS.gene055646:intron | 30.0% | |
| TTAATGCTTCCATATGCATT+AGG | + | chr1.4:48412796-48412815 | MS.gene055646:intron | 30.0% | |
| TTACAACATTCAACTAGTTG+TGG | - | chr1.4:48411716-48411735 | None:intergenic | 30.0% | |
| TTCATTACATTAGTGTATCC+AGG | - | chr1.4:48410094-48410113 | None:intergenic | 30.0% | |
| TTGCATTTCCCTGTTAATAA+TGG | - | chr1.4:48412308-48412327 | None:intergenic | 30.0% | |
| TTTACTTAGAAACAATCCCA+GGG | - | chr1.4:48411470-48411489 | None:intergenic | 30.0% | |
| ! | ATGCATTCTCCAGTTAATTT+TGG | + | chr1.4:48413008-48413027 | MS.gene055646:intron | 30.0% |
| ! | GCTTTTGAACCATTATTAAC+AGG | + | chr1.4:48412296-48412315 | MS.gene055646:intron | 30.0% |
| ! | GGTTGCTTTATATCACAAAA+AGG | + | chr1.4:48412242-48412261 | MS.gene055646:intron | 30.0% |
| ! | TGCAAAAATGTGTGGATTTT+CGG | + | chr1.4:48409651-48409670 | MS.gene055646:intron | 30.0% |
| ! | TGTAGAATGATGCTGATTAT+TGG | + | chr1.4:48413459-48413478 | MS.gene055646:intron | 30.0% |
| ! | TGTGTGTGTTACTAATATGT+AGG | - | chr1.4:48412920-48412939 | None:intergenic | 30.0% |
| !! | AGATGTTTTTGTTATGTGTG+TGG | + | chr1.4:48409735-48409754 | MS.gene055646:intron | 30.0% |
| !! | GACATAACTAATGTTTTGGA+AGG | + | chr1.4:48410689-48410708 | MS.gene055646:CDS | 30.0% |
| !! | GCTTTGAAATTTCACTAGTA+TGG | + | chr1.4:48409299-48409318 | MS.gene055646:intron | 30.0% |
| AAAACTCCTTTGTCTGCAAA+AGG | + | chr1.4:48410124-48410143 | MS.gene055646:CDS | 35.0% | |
| AAACTCCTTTGTCTGCAAAA+GGG | + | chr1.4:48410125-48410144 | MS.gene055646:CDS | 35.0% | |
| AACTTGATTACTTTGTGGTC+TGG | - | chr1.4:48411548-48411567 | None:intergenic | 35.0% | |
| AATGTTTCACAAGAGTTTGC+TGG | + | chr1.4:48413226-48413245 | MS.gene055646:CDS | 35.0% | |
| AATTAGTTCCAGGTGTCAAT+AGG | - | chr1.4:48410962-48410981 | None:intergenic | 35.0% | |
| AGAGACTAGATGATCAGATA+AGG | + | chr1.4:48412213-48412232 | MS.gene055646:CDS | 35.0% | |
| ATACTTACATCAGCATCTGA+AGG | - | chr1.4:48413271-48413290 | None:intergenic | 35.0% | |
| ATCAACATTAGCTGTTATGC+TGG | - | chr1.4:48413630-48413649 | None:intergenic | 35.0% | |
| ATCCTGAGGAAGTAAGTTTA+GGG | + | chr1.4:48412711-48412730 | MS.gene055646:intron | 35.0% | |
| ATTAAGTCTAATGCTTGGCT+TGG | + | chr1.4:48409470-48409489 | MS.gene055646:intron | 35.0% | |
| ATTAGAATGACTTAGTGGCA+TGG | + | chr1.4:48412053-48412072 | MS.gene055646:intron | 35.0% | |
| CAATTGATGTCTACCTTATC+AGG | + | chr1.4:48412873-48412892 | MS.gene055646:CDS | 35.0% | |
| CCAATTAACAACATGTTGCA+AGG | - | chr1.4:48412134-48412153 | None:intergenic | 35.0% | |
| CCATAAGAAACTATAAGCTG+GGG | - | chr1.4:48410296-48410315 | None:intergenic | 35.0% | |
| CCTTGCAACATGTTGTTAAT+TGG | + | chr1.4:48412131-48412150 | MS.gene055646:intron | 35.0% | |
| CGGATAAGATTACTGTACAT+TGG | + | chr1.4:48409674-48409693 | MS.gene055646:intron | 35.0% | |
| CGGATACTATTGTTGTACAT+TGG | + | chr1.4:48409358-48409377 | MS.gene055646:intron | 35.0% | |
| CTAGTGAAATTTCAAAGCCT+CGG | - | chr1.4:48409297-48409316 | None:intergenic | 35.0% | |
| CTATACTATAGGTGCAAAAG+AGG | + | chr1.4:48410657-48410676 | MS.gene055646:intron | 35.0% | |
| CTGATAAGGTAGACATCAAT+TGG | - | chr1.4:48412875-48412894 | None:intergenic | 35.0% | |
| GAACATTCTCCTCTAACATA+TGG | - | chr1.4:48411694-48411713 | None:intergenic | 35.0% | |
| GAGTTAGCATAACAGATATG+TGG | + | chr1.4:48413498-48413517 | MS.gene055646:CDS | 35.0% | |
| GCAAGTAGTTATACCTGATA+AGG | - | chr1.4:48412889-48412908 | None:intergenic | 35.0% | |
| GCATAACAGCTAATGTTGAT+TGG | + | chr1.4:48413630-48413649 | MS.gene055646:intron | 35.0% | |
| GCCATAAGAAACTATAAGCT+GGG | - | chr1.4:48410297-48410316 | None:intergenic | 35.0% | |
| GCTCTAACTTGATTACTTTG+TGG | - | chr1.4:48411553-48411572 | None:intergenic | 35.0% | |
| GTCACAAAAAGGAACCTAAA+AGG | - | chr1.4:48412474-48412493 | None:intergenic | 35.0% | |
| GTTTACTTAGAAACAATCCC+AGG | - | chr1.4:48411471-48411490 | None:intergenic | 35.0% | |
| TAAAACGAAGAAGAACACAC+CGG | - | chr1.4:48408960-48408979 | None:intergenic | 35.0% | |
| TACTTACATCAGCATCTGAA+GGG | - | chr1.4:48413270-48413289 | None:intergenic | 35.0% | |
| TGCCATAAGAAACTATAAGC+TGG | - | chr1.4:48410298-48410317 | None:intergenic | 35.0% | |
| TGGAAATGAATATACACGAG+CGG | - | chr1.4:48411012-48411031 | None:intergenic | 35.0% | |
| TGGTGATATCTCTTTGCTTA+AGG | + | chr1.4:48410907-48410926 | MS.gene055646:CDS | 35.0% | |
| TTAGGGAATCAACTGATGAA+AGG | + | chr1.4:48412728-48412747 | MS.gene055646:intron | 35.0% | |
| TTCATAAACTTTGAGTGCCT+TGG | + | chr1.4:48409758-48409777 | MS.gene055646:intron | 35.0% | |
| TTCATAAGTGAGCATTACCA+AGG | - | chr1.4:48409778-48409797 | None:intergenic | 35.0% | |
| TTGAATTCAGATCCAGTGTT+AGG | - | chr1.4:48409245-48409264 | None:intergenic | 35.0% | |
| TTGATGTGTGTGTGTATCTT+TGG | + | chr1.4:48409951-48409970 | MS.gene055646:intron | 35.0% | |
| TTGATTAAACACTTCGGATG+CGG | + | chr1.4:48413365-48413384 | MS.gene055646:intron | 35.0% | |
| TTGCTGCACTCAACATTTAA+CGG | + | chr1.4:48411046-48411065 | MS.gene055646:intron | 35.0% | |
| ! | AAAAATGTGTGGATTTTCGG+CGG | + | chr1.4:48409654-48409673 | MS.gene055646:intron | 35.0% |
| ! | AAAGCTTTTCTGTCTCAATG+GGG | + | chr1.4:48411333-48411352 | MS.gene055646:intron | 35.0% |
| ! | AATCATTCTAAGGAGCACAA+TGG | + | chr1.4:48412847-48412866 | MS.gene055646:CDS | 35.0% |
| ! | ACAATACTTTTCCTTCTGGA+AGG | - | chr1.4:48412415-48412434 | None:intergenic | 35.0% |
| ! | ATCATTCTAAGGAGCACAAT+GGG | + | chr1.4:48412848-48412867 | MS.gene055646:CDS | 35.0% |
| ! | ATGTTTCACAAGAGTTTGCT+GGG | + | chr1.4:48413227-48413246 | MS.gene055646:CDS | 35.0% |
| ! | CAAAGCTTTTCTGTCTCAAT+GGG | + | chr1.4:48411332-48411351 | MS.gene055646:intron | 35.0% |
| ! | CTAGTGTTTCTGATACATGA+TGG | + | chr1.4:48412769-48412788 | MS.gene055646:intron | 35.0% |
| ! | CTCTTTTGCACCTATAGTAT+AGG | - | chr1.4:48410659-48410678 | None:intergenic | 35.0% |
| ! | GACAGTTCCTTAGGTAATTT+TGG | + | chr1.4:48410364-48410383 | MS.gene055646:intron | 35.0% |
| ! | TCAAAGCTTTTCTGTCTCAA+TGG | + | chr1.4:48411331-48411350 | MS.gene055646:intron | 35.0% |
| !!! | ACTAATGTTTTGGAAGGCAT+TGG | + | chr1.4:48410695-48410714 | MS.gene055646:CDS | 35.0% |
| AAACTTACTTCCTCAGGATC+AGG | - | chr1.4:48412710-48412729 | None:intergenic | 40.0% | |
| AACGGCTTCATTGACATGAT+CGG | - | chr1.4:48408925-48408944 | None:intergenic | 40.0% | |
| AACTCCTTTGTCTGCAAAAG+GGG | + | chr1.4:48410126-48410145 | MS.gene055646:CDS | 40.0% | |
| AAGGTCATAAAGCGGAAGAA+TGG | + | chr1.4:48410025-48410044 | MS.gene055646:intron | 40.0% | |
| ACATGTTGTTAATTGGCTGC+TGG | + | chr1.4:48412138-48412157 | MS.gene055646:intron | 40.0% | |
| AGCCGTTATTGTTAGATCTC+CGG | + | chr1.4:48408938-48408957 | MS.gene055646:CDS | 40.0% | |
| ATATCACCATCCACATTACC+AGG | - | chr1.4:48410896-48410915 | None:intergenic | 40.0% | |
| ATTACTTTGTGGTCTGGCAT+TGG | - | chr1.4:48411542-48411561 | None:intergenic | 40.0% | |
| CACCGGAGATCTAACAATAA+CGG | - | chr1.4:48408943-48408962 | None:intergenic | 40.0% | |
| CACTGGATCTGAATTCAACT+TGG | + | chr1.4:48409247-48409266 | MS.gene055646:intron | 40.0% | |
| CAGAAACATTGAGTAGACAG+AGG | + | chr1.4:48411490-48411509 | MS.gene055646:intron | 40.0% | |
| CCCCAGCTTATAGTTTCTTA+TGG | + | chr1.4:48410293-48410312 | MS.gene055646:intron | 40.0% | |
| CGAGTGTGTGTTTGTTTGAT+AGG | + | chr1.4:48409439-48409458 | MS.gene055646:intron | 40.0% | |
| CTCAAACTTTCTCTCTCCTA+TGG | - | chr1.4:48411247-48411266 | None:intergenic | 40.0% | |
| GAATTATGTTGTCAGCCTTG+TGG | + | chr1.4:48412092-48412111 | MS.gene055646:intron | 40.0% | |
| GATCCTGAGGAAGTAAGTTT+AGG | + | chr1.4:48412710-48412729 | MS.gene055646:intron | 40.0% | |
| GCAAAAACAAAGAACTCACC+TGG | - | chr1.4:48412527-48412546 | None:intergenic | 40.0% | |
| GTCAGTGCTTCATAGATACT+TGG | + | chr1.4:48409620-48409639 | MS.gene055646:intron | 40.0% | |
| GTGACCGAGGAAGATATTAA+GGG | + | chr1.4:48412489-48412508 | MS.gene055646:CDS | 40.0% | |
| TAAAGCAGCAGAAACTTTGC+AGG | + | chr1.4:48410556-48410575 | MS.gene055646:CDS | 40.0% | |
| TACTATAGGTGCAAAAGAGG+AGG | + | chr1.4:48410660-48410679 | MS.gene055646:intron | 40.0% | |
| TAGCTGTTATGCTGGAGTTA+AGG | - | chr1.4:48413622-48413641 | None:intergenic | 40.0% | |
| TAGGCCCTTAATATCTTCCT+CGG | - | chr1.4:48412496-48412515 | None:intergenic | 40.0% | |
| TATCTTCCTCGGTCACAAAA+AGG | - | chr1.4:48412485-48412504 | None:intergenic | 40.0% | |
| TGAGCAACAAGTGACAGAAA+TGG | + | chr1.4:48413132-48413151 | MS.gene055646:CDS | 40.0% | |
| TGTCGTTATGACAGTTCCTT+AGG | + | chr1.4:48410355-48410374 | MS.gene055646:CDS | 40.0% | |
| TGTGACCGAGGAAGATATTA+AGG | + | chr1.4:48412488-48412507 | MS.gene055646:CDS | 40.0% | |
| TTCCCTAAACTTACTTCCTC+AGG | - | chr1.4:48412716-48412735 | None:intergenic | 40.0% | |
| ! | AAAATTGGAGGGATTTTCCG+AGG | + | chr1.4:48409277-48409296 | MS.gene055646:intron | 40.0% |
| ! | AAGTATATCACAGCCTTGTG+AGG | + | chr1.4:48413285-48413304 | MS.gene055646:intron | 40.0% |
| ! | ACAGCTAATGTTGATTGGAG+TGG | + | chr1.4:48413635-48413654 | MS.gene055646:intron | 40.0% |
| ! | AGGACATGATTTGCCTTCTT+TGG | - | chr1.4:48410176-48410195 | None:intergenic | 40.0% |
| ! | AGTATATCACAGCCTTGTGA+GGG | + | chr1.4:48413286-48413305 | MS.gene055646:intron | 40.0% |
| ! | CACTTCATACTGGGGATTTT+GGG | + | chr1.4:48413318-48413337 | MS.gene055646:intron | 40.0% |
| ! | CCAGGGTACTTGATAAAACT+TGG | + | chr1.4:48411776-48411795 | MS.gene055646:intron | 40.0% |
| ! | TAATGTTGATTGGAGTGGAG+TGG | + | chr1.4:48413640-48413659 | MS.gene055646:CDS | 40.0% |
| ! | TACCTCTTGCTTCAAGTTCA+GGG | + | chr1.4:48413104-48413123 | MS.gene055646:CDS | 40.0% |
| ! | TGTGTCGAAAACATTTTCGG+CGG | + | chr1.4:48409338-48409357 | MS.gene055646:intron | 40.0% |
| ! | TTACCTCTTGCTTCAAGTTC+AGG | + | chr1.4:48413103-48413122 | MS.gene055646:CDS | 40.0% |
| ! | TTAGAGGCACATGTATGCAA+AGG | + | chr1.4:48411988-48412007 | MS.gene055646:intron | 40.0% |
| ! | TTCTGACCAGCATTTGAGAT+AGG | - | chr1.4:48410205-48410224 | None:intergenic | 40.0% |
| !! | AGAAGCACTAGAAACTCCAT+AGG | + | chr1.4:48411228-48411247 | MS.gene055646:intron | 40.0% |
| !! | AGTTCTAAGTCAAAGCCACA+AGG | - | chr1.4:48412110-48412129 | None:intergenic | 40.0% |
| !! | ATACTTTTCCTTCTGGAAGG+AGG | - | chr1.4:48412412-48412431 | None:intergenic | 40.0% |
| !! | ATGAACATGTTGGTGGTGTA+AGG | + | chr1.4:48410006-48410025 | MS.gene055646:intron | 40.0% |
| !! | CCAAGTTTTATCAAGTACCC+TGG | - | chr1.4:48411779-48411798 | None:intergenic | 40.0% |
| !! | GTATCTATGAAGCACTGACA+CGG | - | chr1.4:48409619-48409638 | None:intergenic | 40.0% |
| !! | TATTGGCTTCTATCAGATGC+TGG | + | chr1.4:48413476-48413495 | MS.gene055646:CDS | 40.0% |
| !! | TGCAGACAAAGGAGTTTTGA+AGG | - | chr1.4:48410122-48410141 | None:intergenic | 40.0% |
| !! | TGTTTCACAAGAGTTTGCTG+GGG | + | chr1.4:48413228-48413247 | MS.gene055646:CDS | 40.0% |
| !!! | AGCACTGACACTTTTACCAA+AGG | + | chr1.4:48409494-48409513 | MS.gene055646:intron | 40.0% |
| !!! | CAGACAAAGGAGTTTTGAAG+GGG | - | chr1.4:48410120-48410139 | None:intergenic | 40.0% |
| !!! | GCAGACAAAGGAGTTTTGAA+GGG | - | chr1.4:48410121-48410140 | None:intergenic | 40.0% |
| AAAGAACTCACCTGGAAGCA+AGG | - | chr1.4:48412519-48412538 | None:intergenic | 45.0% | |
| AAATCCCCAGTATGAAGTGG+AGG | - | chr1.4:48413317-48413336 | None:intergenic | 45.0% | |
| AACGCAAGATGACGCTTCAA+CGG | - | chr1.4:48408828-48408847 | None:intergenic | 45.0% | |
| AATCCCCAGTATGAAGTGGA+GGG | - | chr1.4:48413316-48413335 | None:intergenic | 45.0% | |
| ACATTACCTCCTCAAGCTCA+GGG | + | chr1.4:48411424-48411443 | MS.gene055646:intron | 45.0% | |
| ACGGCTGTCATCAATGTTTG+AGG | + | chr1.4:48411601-48411620 | MS.gene055646:intron | 45.0% | |
| ACTCCTTTGTCTGCAAAAGG+GGG | + | chr1.4:48410127-48410146 | MS.gene055646:CDS | 45.0% | |
| AGAAGACCTGCAAAGTGAAC+GGG | + | chr1.4:48411639-48411658 | MS.gene055646:intron | 45.0% | |
| AGCAGAAGCCCATATGTTAG+AGG | + | chr1.4:48411682-48411701 | MS.gene055646:intron | 45.0% | |
| AGCATGGGGATTATGTGAGA+TGG | - | chr1.4:48411803-48411822 | None:intergenic | 45.0% | |
| AGGTCTTCTGTGATGCTGAT+TGG | - | chr1.4:48411628-48411647 | None:intergenic | 45.0% | |
| ATAGCAATCAAAGCTCCGCA+TGG | + | chr1.4:48412668-48412687 | MS.gene055646:CDS | 45.0% | |
| CAAAAGTCAAGTAACAGCCC+TGG | + | chr1.4:48410073-48410092 | MS.gene055646:CDS | 45.0% | |
| CAGAAGACCTGCAAAGTGAA+CGG | + | chr1.4:48411638-48411657 | MS.gene055646:intron | 45.0% | |
| CCAAAATCCCCAGTATGAAG+TGG | - | chr1.4:48413320-48413339 | None:intergenic | 45.0% | |
| CCAACACCTATCTCAAATGC+TGG | + | chr1.4:48410196-48410215 | MS.gene055646:CDS | 45.0% | |
| CCAACATGAGGGAAAGAAAG+AGG | + | chr1.4:48411823-48411842 | MS.gene055646:intron | 45.0% | |
| CCTCTTTCTTTCCCTCATGT+TGG | - | chr1.4:48411826-48411845 | None:intergenic | 45.0% | |
| CTATAAGCTGGGGTACAACA+AGG | - | chr1.4:48410286-48410305 | None:intergenic | 45.0% | |
| GCACTCAACATTTAACGGCT+CGG | + | chr1.4:48411051-48411070 | MS.gene055646:intron | 45.0% | |
| GCATGGGGATTATGTGAGAT+GGG | - | chr1.4:48411802-48411821 | None:intergenic | 45.0% | |
| GGAAGTTGACAACCTTTCTC+TGG | + | chr1.4:48412184-48412203 | MS.gene055646:CDS | 45.0% | |
| GGAATTGAATCTTCTACGCC+TGG | + | chr1.4:48410875-48410894 | MS.gene055646:CDS | 45.0% | |
| GGTGGTGTAAGGTCATAAAG+CGG | + | chr1.4:48410017-48410036 | MS.gene055646:intron | 45.0% | |
| TAACCCGAAGATCAGTACCA+GGG | + | chr1.4:48411759-48411778 | MS.gene055646:intron | 45.0% | |
| TACATTACCTCCTCAAGCTC+AGG | + | chr1.4:48411423-48411442 | MS.gene055646:intron | 45.0% | |
| TACTCATCAGTCGGTGCAAA+CGG | - | chr1.4:48408867-48408886 | None:intergenic | 45.0% | |
| TCTGCGGCATGCATTTGTAT+TGG | - | chr1.4:48411575-48411594 | None:intergenic | 45.0% | |
| TCTTGAGACCTATTGACACC+TGG | + | chr1.4:48410951-48410970 | MS.gene055646:intron | 45.0% | |
| TGAAGCAAGAGGTAAGCTTG+CGG | - | chr1.4:48413098-48413117 | None:intergenic | 45.0% | |
| TGAGCTAGTGGTGGTTATTC+AGG | - | chr1.4:48411304-48411323 | None:intergenic | 45.0% | |
| TGATTCATAGGCAGTACCCT+GGG | + | chr1.4:48411451-48411470 | MS.gene055646:intron | 45.0% | |
| TTGATTCATAGGCAGTACCC+TGG | + | chr1.4:48411450-48411469 | MS.gene055646:intron | 45.0% | |
| TTTCCCTCATGTTGGAGCAT+GGG | - | chr1.4:48411818-48411837 | None:intergenic | 45.0% | |
| TTTGTCTGCAAAAGGGGGAA+GGG | + | chr1.4:48410132-48410151 | MS.gene055646:CDS | 45.0% | |
| ! | ATCTTCTACGCCTGGTAATG+TGG | + | chr1.4:48410883-48410902 | MS.gene055646:CDS | 45.0% |
| ! | CCACTTCATACTGGGGATTT+TGG | + | chr1.4:48413317-48413336 | MS.gene055646:intron | 45.0% |
| ! | CCAGCATTTGAGATAGGTGT+TGG | - | chr1.4:48410199-48410218 | None:intergenic | 45.0% |
| ! | TAGGTTCCTTTTTGTGACCG+AGG | + | chr1.4:48412476-48412495 | MS.gene055646:intron | 45.0% |
| !! | AAGTCAAGGGCATCCAAAGA+AGG | + | chr1.4:48410160-48410179 | MS.gene055646:CDS | 45.0% |
| !! | ACTTTTACCAAAGGCGTGTC+TGG | + | chr1.4:48409503-48409522 | MS.gene055646:intron | 45.0% |
| !! | AGTACCCTGGTACTGATCTT+CGG | - | chr1.4:48411766-48411785 | None:intergenic | 45.0% |
| !! | CTCGAGAGCATTTCAAAGTC+AGG | - | chr1.4:48413677-48413696 | None:intergenic | 45.0% |
| !! | CTGACTTTGAAATGCTCTCG+AGG | + | chr1.4:48413675-48413694 | MS.gene055646:CDS | 45.0% |
| !! | CTTTCGCTGCTGTTGATTCT+AGG | + | chr1.4:48408892-48408911 | MS.gene055646:CDS | 45.0% |
| !! | GCATTTGAGATAGGTGTTGG+AGG | - | chr1.4:48410196-48410215 | None:intergenic | 45.0% |
| !! | GTTTCACAAGAGTTTGCTGG+GGG | + | chr1.4:48413229-48413248 | MS.gene055646:CDS | 45.0% |
| !! | TTAGGGTTAGCTACAGTCGA+TGG | - | chr1.4:48413734-48413753 | None:intergenic | 45.0% |
| !! | TTGTGGCTTTGTCTTGCAGT+CGG | + | chr1.4:48412163-48412182 | MS.gene055646:intron | 45.0% |
| !!! | TTTTTTATTTTTATTTTTTG+TGG | + | chr1.4:48409084-48409103 | MS.gene055646:intron | 5.0% |
| AACTCACCTGGAAGCAAGGT+AGG | - | chr1.4:48412515-48412534 | None:intergenic | 50.0% | |
| AAGCAAGAGGTAAGCTTGCG+GGG | - | chr1.4:48413096-48413115 | None:intergenic | 50.0% | |
| AATCAACCACCCTGAGCTTG+AGG | - | chr1.4:48411436-48411455 | None:intergenic | 50.0% | |
| AATCCCCATGCTCCAACATG+AGG | + | chr1.4:48411811-48411830 | MS.gene055646:intron | 50.0% | |
| ACCTGCTGAATGCAGTGGAA+AGG | + | chr1.4:48413156-48413175 | MS.gene055646:CDS | 50.0% | |
| ACTTCCAAGGTGGTTCCATG+CGG | - | chr1.4:48412686-48412705 | None:intergenic | 50.0% | |
| AGGATCAGGAACTTCCAAGG+TGG | - | chr1.4:48412696-48412715 | None:intergenic | 50.0% | |
| ATCCCCAGTATGAAGTGGAG+GGG | - | chr1.4:48413315-48413334 | None:intergenic | 50.0% | |
| ATCCCCATGCTCCAACATGA+GGG | + | chr1.4:48411812-48411831 | MS.gene055646:intron | 50.0% | |
| ATGGTACCTGCTGAATGCAG+TGG | + | chr1.4:48413151-48413170 | MS.gene055646:CDS | 50.0% | |
| CAATTCCTCTGCATGCCACA+AGG | - | chr1.4:48410862-48410881 | None:intergenic | 50.0% | |
| CGTCAACGGCCTAATGCATA+TGG | - | chr1.4:48412808-48412827 | None:intergenic | 50.0% | |
| CTAACCCGAAGATCAGTACC+AGG | + | chr1.4:48411758-48411777 | MS.gene055646:intron | 50.0% | |
| CTATGACCCGTTCACTTTGC+AGG | - | chr1.4:48411648-48411667 | None:intergenic | 50.0% | |
| CTCAGGATCAGGAACTTCCA+AGG | - | chr1.4:48412699-48412718 | None:intergenic | 50.0% | |
| CTGCAAAGTGAACGGGTCAT+AGG | + | chr1.4:48411646-48411665 | MS.gene055646:intron | 50.0% | |
| CTTGGAAGTTCCTGATCCTG+AGG | + | chr1.4:48412697-48412716 | MS.gene055646:CDS | 50.0% | |
| CTTTCCCTCATGTTGGAGCA+TGG | - | chr1.4:48411819-48411838 | None:intergenic | 50.0% | |
| CTTTGTCTGCAAAAGGGGGA+AGG | + | chr1.4:48410131-48410150 | MS.gene055646:CDS | 50.0% | |
| GAAGCAAGAGGTAAGCTTGC+GGG | - | chr1.4:48413097-48413116 | None:intergenic | 50.0% | |
| GACCCTGAACTTGAAGCAAG+AGG | - | chr1.4:48413109-48413128 | None:intergenic | 50.0% | |
| GACTGCAAGACAAAGCCACA+AGG | - | chr1.4:48412164-48412183 | None:intergenic | 50.0% | |
| GGGAAGGGCAAACAAGTCAA+GGG | + | chr1.4:48410147-48410166 | MS.gene055646:CDS | 50.0% | |
| GTCTCTGCTCTTCCAGAGAA+AGG | - | chr1.4:48412199-48412218 | None:intergenic | 50.0% | |
| TAACCACCACTAGCTCACTG+AGG | + | chr1.4:48411307-48411326 | MS.gene055646:intron | 50.0% | |
| TCAAACACCAGACACGCCTT+TGG | - | chr1.4:48409513-48409532 | None:intergenic | 50.0% | |
| TCAAACCTTGTGGCATGCAG+AGG | + | chr1.4:48410854-48410873 | MS.gene055646:intron | 50.0% | |
| TCATAACGACAGCTACCAGC+AGG | - | chr1.4:48410346-48410365 | None:intergenic | 50.0% | |
| TCCTTTCCACTGCATTCAGC+AGG | - | chr1.4:48413160-48413179 | None:intergenic | 50.0% | |
| TCTCCGCTGTAGTTCGTCAA+CGG | - | chr1.4:48412822-48412841 | None:intergenic | 50.0% | |
| TGACAGCCGTTCTACTTCTG+CGG | - | chr1.4:48411591-48411610 | None:intergenic | 50.0% | |
| TGAGAAGAGAGCAGAGCTTG+AGG | - | chr1.4:48413190-48413209 | None:intergenic | 50.0% | |
| TGCATGCCGCAGAAGTAGAA+CGG | + | chr1.4:48411582-48411601 | MS.gene055646:intron | 50.0% | |
| TGCTTTGTCCTCCTTCCAGA+AGG | + | chr1.4:48412401-48412420 | MS.gene055646:intron | 50.0% | |
| TTCCCCCTCCACTTCATACT+GGG | + | chr1.4:48413309-48413328 | MS.gene055646:intron | 50.0% | |
| TTCCCTCATGTTGGAGCATG+GGG | - | chr1.4:48411817-48411836 | None:intergenic | 50.0% | |
| TTTGAGCCTCAGTGAGCTAG+TGG | - | chr1.4:48411316-48411335 | None:intergenic | 50.0% | |
| ! | CTTCCCCCTTTTGCAGACAA+AGG | - | chr1.4:48410133-48410152 | None:intergenic | 50.0% |
| ! | GCTCAGGGTGGTTGATTCAT+AGG | + | chr1.4:48411439-48411458 | MS.gene055646:intron | 50.0% |
| ! | TCTACGCCTGGTAATGTGGA+TGG | + | chr1.4:48410887-48410906 | MS.gene055646:CDS | 50.0% |
| ! | TTAACGGCTCGGACTCTTGT+TGG | + | chr1.4:48411062-48411081 | MS.gene055646:intron | 50.0% |
| !! | GGTACTGATCTTCGGGTTAG+TGG | - | chr1.4:48411758-48411777 | None:intergenic | 50.0% |
| !! | GTACCCTGGTACTGATCTTC+GGG | - | chr1.4:48411765-48411784 | None:intergenic | 50.0% |
| !! | TTAATTGGCTGCTGGCCTTG+TGG | + | chr1.4:48412146-48412165 | MS.gene055646:intron | 50.0% |
| AGCAAGAGGTAAGCTTGCGG+GGG | - | chr1.4:48413095-48413114 | None:intergenic | 55.0% | |
| AGGCCGTTGACGAACTACAG+CGG | + | chr1.4:48412816-48412835 | MS.gene055646:intron | 55.0% | |
| CCATTTGCTCAAGCGTGCTG+AGG | + | chr1.4:48410514-48410533 | MS.gene055646:CDS | 55.0% | |
| CCTCAGCACGCTTGAGCAAA+TGG | - | chr1.4:48410517-48410536 | None:intergenic | 55.0% | |
| GCAAGATGACGCTTCAACGG+CGG | - | chr1.4:48408825-48408844 | None:intergenic | 55.0% | |
| GGGGAAGGGCAAACAAGTCA+AGG | + | chr1.4:48410146-48410165 | MS.gene055646:CDS | 55.0% | |
| GTTCCCCCTCCACTTCATAC+TGG | + | chr1.4:48413308-48413327 | MS.gene055646:intron | 55.0% | |
| TAAGGGCCTACCTTGCTTCC+AGG | + | chr1.4:48412506-48412525 | MS.gene055646:CDS | 55.0% | |
| TCATCAGTCGGTGCAAACGG+TGG | - | chr1.4:48408864-48408883 | None:intergenic | 55.0% | |
| TCCCCAGTATGAAGTGGAGG+GGG | - | chr1.4:48413314-48413333 | None:intergenic | 55.0% | |
| TCCCCCTCCACTTCATACTG+GGG | + | chr1.4:48413310-48413329 | MS.gene055646:intron | 55.0% | |
| TTACCTCCTCAAGCTCAGGG+TGG | + | chr1.4:48411427-48411446 | MS.gene055646:intron | 55.0% | |
| TTGCTCAAGCGTGCTGAGGA+TGG | + | chr1.4:48410518-48410537 | MS.gene055646:CDS | 55.0% | |
| AACTCCATCGCCGGGACTTG+CGG | + | chr1.4:48413703-48413722 | MS.gene055646:CDS | 60.0% | |
| AGCAGGAGTGAGCGGAGAAG+GGG | - | chr1.4:48410329-48410348 | None:intergenic | 60.0% | |
| AGCTCCGCATGGAACCACCT+TGG | + | chr1.4:48412679-48412698 | MS.gene055646:CDS | 60.0% | |
| AGGCCACAAACTCCATCGCC+GGG | + | chr1.4:48413695-48413714 | MS.gene055646:CDS | 60.0% | |
| AGTCCCGGCGATGGAGTTTG+TGG | - | chr1.4:48413701-48413720 | None:intergenic | 60.0% | |
| ATCTGTGCTCCGGTCGGCAT+CGG | - | chr1.4:48408798-48408817 | None:intergenic | 60.0% | |
| CAACCACCCTGAGCTTGAGG+AGG | - | chr1.4:48411433-48411452 | None:intergenic | 60.0% | |
| CAGCAGGAGTGAGCGGAGAA+GGG | - | chr1.4:48410330-48410349 | None:intergenic | 60.0% | |
| CAGCTACCAGCAGGAGTGAG+CGG | - | chr1.4:48410337-48410356 | None:intergenic | 60.0% | |
| GAGCCTCAGTGAGCTAGTGG+TGG | - | chr1.4:48411313-48411332 | None:intergenic | 60.0% | |
| GAGGCCACAAACTCCATCGC+CGG | + | chr1.4:48413694-48413713 | MS.gene055646:CDS | 60.0% | |
| GATGGTGCTTCCGCAAGTCC+CGG | - | chr1.4:48413716-48413735 | None:intergenic | 60.0% | |
| GCAAGAGGTAAGCTTGCGGG+GGG | - | chr1.4:48413094-48413113 | None:intergenic | 60.0% | |
| GTCGGAAGGTCCAGCGTTAC+CGG | - | chr1.4:48408766-48408785 | None:intergenic | 60.0% | |
| TGACACGGTCACGTCGACAC+CGG | - | chr1.4:48409604-48409623 | None:intergenic | 60.0% | |
| TGCCGACCGGAGCACAGATT+CGG | + | chr1.4:48408799-48408818 | MS.gene055646:CDS | 60.0% | |
| AACGCTGGACCTTCCGACCG+TGG | + | chr1.4:48408768-48408787 | MS.gene055646:CDS | 65.0% | |
| CCAGCAGGAGTGAGCGGAGA+AGG | - | chr1.4:48410331-48410350 | None:intergenic | 65.0% | |
| CCTTCTCCGCTCACTCCTGC+TGG | + | chr1.4:48410328-48410347 | MS.gene055646:CDS | 65.0% | |
| GGCCGAATCTGTGCTCCGGT+CGG | - | chr1.4:48408804-48408823 | None:intergenic | 65.0% | |
| GTGGAGGGGGAACCCTCACA+AGG | - | chr1.4:48413301-48413320 | None:intergenic | 65.0% | |
| ATCGGCGAGCCACGGTCGGA+AGG | - | chr1.4:48408780-48408799 | None:intergenic | 70.0% | |
| CGGCGGCCGAATCTGTGCTC+CGG | - | chr1.4:48408808-48408827 | None:intergenic | 70.0% | |
| GCTTCCGCAAGTCCCGGCGA+TGG | - | chr1.4:48413710-48413729 | None:intergenic | 70.0% | |
| CGTGGCTCGCCGATGCCGAC+CGG | + | chr1.4:48408786-48408805 | MS.gene055646:CDS | 75.0% | |
| !! | CGGCATCGGCGAGCCACGGT+CGG | - | chr1.4:48408784-48408803 | None:intergenic | 75.0% |
| !! | CGGTCGGCATCGGCGAGCCA+CGG | - | chr1.4:48408788-48408807 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.4 | gene | 48408759 | 48413763 | 48408759 | ID=MS.gene055646 |
| chr1.4 | mRNA | 48408759 | 48413763 | 48408759 | ID=MS.gene055646.t1;Parent=MS.gene055646 |
| chr1.4 | exon | 48408759 | 48408959 | 48408759 | ID=MS.gene055646.t1.exon1;Parent=MS.gene055646.t1 |
| chr1.4 | CDS | 48408759 | 48408959 | 48408759 | ID=cds.MS.gene055646.t1;Parent=MS.gene055646.t1 |
| chr1.4 | exon | 48410028 | 48410217 | 48410028 | ID=MS.gene055646.t1.exon2;Parent=MS.gene055646.t1 |
| chr1.4 | CDS | 48410028 | 48410217 | 48410028 | ID=cds.MS.gene055646.t1;Parent=MS.gene055646.t1 |
| chr1.4 | exon | 48410323 | 48410376 | 48410323 | ID=MS.gene055646.t1.exon3;Parent=MS.gene055646.t1 |
| chr1.4 | CDS | 48410323 | 48410376 | 48410323 | ID=cds.MS.gene055646.t1;Parent=MS.gene055646.t1 |
| chr1.4 | exon | 48410492 | 48410577 | 48410492 | ID=MS.gene055646.t1.exon4;Parent=MS.gene055646.t1 |
| chr1.4 | CDS | 48410492 | 48410577 | 48410492 | ID=cds.MS.gene055646.t1;Parent=MS.gene055646.t1 |
| chr1.4 | exon | 48410668 | 48410756 | 48410668 | ID=MS.gene055646.t1.exon5;Parent=MS.gene055646.t1 |
| chr1.4 | CDS | 48410668 | 48410756 | 48410668 | ID=cds.MS.gene055646.t1;Parent=MS.gene055646.t1 |
| chr1.4 | exon | 48410874 | 48410928 | 48410874 | ID=MS.gene055646.t1.exon6;Parent=MS.gene055646.t1 |
| chr1.4 | CDS | 48410874 | 48410928 | 48410874 | ID=cds.MS.gene055646.t1;Parent=MS.gene055646.t1 |
| chr1.4 | exon | 48412182 | 48412234 | 48412182 | ID=MS.gene055646.t1.exon7;Parent=MS.gene055646.t1 |
| chr1.4 | CDS | 48412182 | 48412234 | 48412182 | ID=cds.MS.gene055646.t1;Parent=MS.gene055646.t1 |
| chr1.4 | exon | 48412318 | 48412368 | 48412318 | ID=MS.gene055646.t1.exon8;Parent=MS.gene055646.t1 |
| chr1.4 | CDS | 48412318 | 48412368 | 48412318 | ID=cds.MS.gene055646.t1;Parent=MS.gene055646.t1 |
| chr1.4 | exon | 48412479 | 48412527 | 48412479 | ID=MS.gene055646.t1.exon9;Parent=MS.gene055646.t1 |
| chr1.4 | CDS | 48412479 | 48412527 | 48412479 | ID=cds.MS.gene055646.t1;Parent=MS.gene055646.t1 |
| chr1.4 | exon | 48412656 | 48412721 | 48412656 | ID=MS.gene055646.t1.exon10;Parent=MS.gene055646.t1 |
| chr1.4 | CDS | 48412656 | 48412721 | 48412656 | ID=cds.MS.gene055646.t1;Parent=MS.gene055646.t1 |
| chr1.4 | exon | 48412818 | 48412894 | 48412818 | ID=MS.gene055646.t1.exon11;Parent=MS.gene055646.t1 |
| chr1.4 | CDS | 48412818 | 48412894 | 48412818 | ID=cds.MS.gene055646.t1;Parent=MS.gene055646.t1 |
| chr1.4 | exon | 48413051 | 48413282 | 48413051 | ID=MS.gene055646.t1.exon12;Parent=MS.gene055646.t1 |
| chr1.4 | CDS | 48413051 | 48413282 | 48413051 | ID=cds.MS.gene055646.t1;Parent=MS.gene055646.t1 |
| chr1.4 | exon | 48413464 | 48413530 | 48413464 | ID=MS.gene055646.t1.exon13;Parent=MS.gene055646.t1 |
| chr1.4 | CDS | 48413464 | 48413530 | 48413464 | ID=cds.MS.gene055646.t1;Parent=MS.gene055646.t1 |
| chr1.4 | exon | 48413639 | 48413763 | 48413639 | ID=MS.gene055646.t1.exon14;Parent=MS.gene055646.t1 |
| chr1.4 | CDS | 48413639 | 48413763 | 48413639 | ID=cds.MS.gene055646.t1;Parent=MS.gene055646.t1 |
| Gene Sequence |
| Protein sequence |
