Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene41081.t1 | XP_003592452.2 | 98.3 | 464 | 7 | 1 | 1 | 464 | 1 | 463 | 7.10E-255 | 889.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene41081.t1 | Q9FNY0 | 55.9 | 474 | 166 | 11 | 16 | 464 | 30 | 485 | 3.6e-130 | 466.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene41081.t1 | G7IE33 | 98.3 | 464 | 7 | 1 | 1 | 464 | 1 | 463 | 5.1e-255 | 889.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene41081.t1 | TF | E2F-DP |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene055644 | MS.gene41081 | 0.841861 | 3.67E-58 | -1.69E-46 |
| MS.gene055646 | MS.gene41081 | 0.994186 | 3.06E-205 | -1.69E-46 |
PPI:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene41081.t1 | MTR_1g105110 | 98.276 | 464 | 7 | 1 | 1 | 464 | 1 | 463 | 0.0 | 934 |
| MS.gene41081.t1 | MTR_4g052000 | 59.234 | 444 | 169 | 8 | 25 | 461 | 19 | 457 | 2.03e-174 | 497 |
| MS.gene41081.t1 | MTR_3g113800 | 54.260 | 223 | 99 | 1 | 127 | 349 | 89 | 308 | 5.07e-72 | 232 |
| MS.gene41081.t1 | MTR_3g113800 | 58.000 | 200 | 81 | 1 | 127 | 326 | 89 | 285 | 5.10e-70 | 225 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene41081.t1 | AT2G36010 | 56.959 | 467 | 159 | 11 | 16 | 458 | 30 | 478 | 1.39e-172 | 493 |
| MS.gene41081.t1 | AT2G36010 | 56.716 | 469 | 159 | 12 | 16 | 458 | 30 | 480 | 1.30e-170 | 489 |
| MS.gene41081.t1 | AT5G22220 | 53.092 | 469 | 179 | 14 | 22 | 461 | 10 | 466 | 1.19e-143 | 419 |
| MS.gene41081.t1 | AT5G22220 | 52.790 | 466 | 182 | 13 | 22 | 461 | 10 | 463 | 5.74e-141 | 412 |
| MS.gene41081.t1 | AT2G36010 | 46.332 | 518 | 165 | 14 | 16 | 458 | 30 | 509 | 2.86e-133 | 394 |
| MS.gene41081.t1 | AT1G47870 | 47.003 | 317 | 118 | 7 | 105 | 420 | 123 | 390 | 2.50e-79 | 252 |
| MS.gene41081.t1 | AT1G47870 | 47.003 | 317 | 118 | 7 | 105 | 420 | 124 | 391 | 2.75e-79 | 252 |
| MS.gene41081.t1 | AT5G14960 | 41.304 | 92 | 49 | 1 | 136 | 227 | 6 | 92 | 1.80e-12 | 68.9 |
| MS.gene41081.t1 | AT3G48160 | 45.205 | 73 | 39 | 1 | 143 | 215 | 34 | 105 | 3.98e-11 | 65.1 |
| MS.gene41081.t1 | AT3G48160 | 45.205 | 73 | 39 | 1 | 143 | 215 | 34 | 105 | 4.11e-11 | 65.1 |
Find 121 sgRNAs with CRISPR-Local
Find 329 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTTCGCTGCTGTTGATTCT+AGG | 0.183439 | 1.3:+42564415 | MS.gene41081:CDS |
| TGTAGAATGATGCTGATTAT+TGG | 0.219679 | 1.3:+42568980 | MS.gene41081:intron |
| AGGACATGATTTGCCTTCTT+TGG | 0.234385 | 1.3:-42565696 | None:intergenic |
| TTACCTCTTGCTTCAAGTTC+AGG | 0.236533 | 1.3:+42568624 | MS.gene41081:CDS |
| GAGAAATTTGAAGAGATTAA+TGG | 0.237066 | 1.3:+42568582 | MS.gene41081:CDS |
| AATCAAAATCATCTCTGATT+AGG | 0.254900 | 1.3:-42569270 | None:intergenic |
| TGTGACCGAGGAAGATATTA+AGG | 0.256644 | 1.3:+42568011 | MS.gene41081:CDS |
| CAATTGATGTCTACCTTATC+AGG | 0.299411 | 1.3:+42568396 | MS.gene41081:CDS |
| ATATGACATAACTAATGTTT+TGG | 0.312982 | 1.3:+42566208 | MS.gene41081:CDS |
| ATCAAAATCATCTCTGATTA+GGG | 0.322568 | 1.3:-42569269 | None:intergenic |
| TATCTTCCTCGGTCACAAAA+AGG | 0.345600 | 1.3:-42568005 | None:intergenic |
| TAAGGGCCTACCTTGCTTCC+AGG | 0.358343 | 1.3:+42568029 | MS.gene41081:CDS |
| AAAACTCCTTTGTCTGCAAA+AGG | 0.367786 | 1.3:+42565647 | MS.gene41081:CDS |
| TGGTGATATCTCTTTGCTTA+AGG | 0.368188 | 1.3:+42566430 | MS.gene41081:CDS |
| GAAGCAAGAGGTAAGCTTGC+GGG | 0.386616 | 1.3:-42568615 | None:intergenic |
| CTGATAAGGTAGACATCAAT+TGG | 0.387115 | 1.3:-42568395 | None:intergenic |
| TTCATTACATTAGTGTATCC+AGG | 0.390006 | 1.3:-42565614 | None:intergenic |
| ATATCAAGAACAGAATATAT+TGG | 0.392044 | 1.3:+42566255 | MS.gene41081:CDS |
| CCAGCAGGAGTGAGCGGAGA+AGG | 0.392492 | 1.3:-42565851 | None:intergenic |
| CCTCAGCACGCTTGAGCAAA+TGG | 0.395797 | 1.3:-42566037 | None:intergenic |
| TTCCCTAAACTTACTTCCTC+AGG | 0.398706 | 1.3:-42568236 | None:intergenic |
| TACCTCTTGCTTCAAGTTCA+GGG | 0.401939 | 1.3:+42568625 | MS.gene41081:CDS |
| GTCGGAAGGTCCAGCGTTAC+CGG | 0.403176 | 1.3:-42564286 | None:intergenic |
| AATGTTTCACAAGAGTTTGC+TGG | 0.409766 | 1.3:+42568747 | MS.gene41081:CDS |
| TTCTGACCAGCATTTGAGAT+AGG | 0.420653 | 1.3:-42565725 | None:intergenic |
| GGAAGTTGACAACCTTTCTC+TGG | 0.430841 | 1.3:+42567707 | MS.gene41081:CDS |
| TAAAGCAGCAGAAACTTTGC+AGG | 0.430868 | 1.3:+42566079 | MS.gene41081:CDS |
| AAACTCCTTTGTCTGCAAAA+GGG | 0.431635 | 1.3:+42565648 | MS.gene41081:CDS |
| ATCTGTGCTCCGGTCGGCAT+CGG | 0.435761 | 1.3:-42564318 | None:intergenic |
| GGAGATATAGAATCATTCTA+AGG | 0.456891 | 1.3:+42568360 | MS.gene41081:CDS |
| CTCGAGAGCATTTCAAAGTC+AGG | 0.458107 | 1.3:-42569195 | None:intergenic |
| TGTCGTTATGACAGTTCCTT+AGG | 0.460009 | 1.3:+42565878 | MS.gene41081:CDS |
| TCCTTTCCACTGCATTCAGC+AGG | 0.460324 | 1.3:-42568678 | None:intergenic |
| GTGACCGAGGAAGATATTAA+GGG | 0.460410 | 1.3:+42568012 | MS.gene41081:CDS |
| GCATAACAGCTAATGTTGAT+TGG | 0.461803 | 1.3:+42569151 | MS.gene41081:intron |
| CCTTCTCCGCTCACTCCTGC+TGG | 0.469787 | 1.3:+42565851 | MS.gene41081:CDS |
| GCAAGTAGTTATACCTGATA+AGG | 0.470864 | 1.3:-42568409 | None:intergenic |
| ATGTTTCACAAGAGTTTGCT+GGG | 0.474909 | 1.3:+42568748 | MS.gene41081:CDS |
| TGCCGACCGGAGCACAGATT+CGG | 0.476300 | 1.3:+42564322 | MS.gene41081:CDS |
| ATCATTCTAAGGAGCACAAT+GGG | 0.480097 | 1.3:+42568371 | MS.gene41081:CDS |
| GGGGAAGGGCAAACAAGTCA+AGG | 0.482335 | 1.3:+42565669 | MS.gene41081:CDS |
| AAACTTACTTCCTCAGGATC+AGG | 0.482688 | 1.3:-42568230 | None:intergenic |
| TACTCATCAGTCGGTGCAAA+CGG | 0.485816 | 1.3:-42564387 | None:intergenic |
| TGAGCAACAAGTGACAGAAA+TGG | 0.489280 | 1.3:+42568653 | MS.gene41081:CDS |
| GTCTCTGCTCTTCCAGAGAA+AGG | 0.490737 | 1.3:-42567719 | None:intergenic |
| TATTGGCTTCTATCAGATGC+TGG | 0.491589 | 1.3:+42568997 | MS.gene41081:CDS |
| AGTCCCGGCGATGGAGTTTG+TGG | 0.503718 | 1.3:-42569219 | None:intergenic |
| AGCCGTTATTGTTAGATCTC+CGG | 0.504106 | 1.3:+42564461 | MS.gene41081:CDS |
| CCAGCATTTGAGATAGGTGT+TGG | 0.506282 | 1.3:-42565719 | None:intergenic |
| AACTCCTTTGTCTGCAAAAG+GGG | 0.506592 | 1.3:+42565649 | MS.gene41081:CDS |
| GGAATTGAATCTTCTACGCC+TGG | 0.513959 | 1.3:+42566398 | MS.gene41081:CDS |
| AAGGTCATAAAGCGGAAGAA+TGG | 0.515250 | 1.3:+42565548 | MS.gene41081:intron |
| AACTCCATCGCCGGGACTTG+CGG | 0.515372 | 1.3:+42569224 | MS.gene41081:CDS |
| CAGCAGGAGTGAGCGGAGAA+GGG | 0.521252 | 1.3:-42565850 | None:intergenic |
| TGAGAAGAGAGCAGAGCTTG+AGG | 0.521585 | 1.3:-42568708 | None:intergenic |
| CGTGGCTCGCCGATGCCGAC+CGG | 0.525876 | 1.3:+42564309 | MS.gene41081:CDS |
| GGCCGAATCTGTGCTCCGGT+CGG | 0.529279 | 1.3:-42564324 | None:intergenic |
| CGGCATCGGCGAGCCACGGT+CGG | 0.533060 | 1.3:-42564304 | None:intergenic |
| GATGGTGCTTCCGCAAGTCC+CGG | 0.535364 | 1.3:-42569234 | None:intergenic |
| AGGCCACAAACTCCATCGCC+GGG | 0.535755 | 1.3:+42569216 | MS.gene41081:CDS |
| AAGTCAAGGGCATCCAAAGA+AGG | 0.536537 | 1.3:+42565683 | MS.gene41081:CDS |
| GCTTCCGCAAGTCCCGGCGA+TGG | 0.539022 | 1.3:-42569228 | None:intergenic |
| CGGTCGGCATCGGCGAGCCA+CGG | 0.539391 | 1.3:-42564308 | None:intergenic |
| CACCGGAGATCTAACAATAA+CGG | 0.545488 | 1.3:-42564463 | None:intergenic |
| ATCGGCGAGCCACGGTCGGA+AGG | 0.546657 | 1.3:-42564300 | None:intergenic |
| CTATACTATAGGTGCAAAAG+AGG | 0.547054 | 1.3:+42566180 | MS.gene41081:intron |
| GAGGCCACAAACTCCATCGC+CGG | 0.547101 | 1.3:+42569215 | MS.gene41081:CDS |
| AAGCAAGAGGTAAGCTTGCG+GGG | 0.551818 | 1.3:-42568614 | None:intergenic |
| AGCAGGAGTGAGCGGAGAAG+GGG | 0.552395 | 1.3:-42565849 | None:intergenic |
| TTGCTCAAGCGTGCTGAGGA+TGG | 0.554722 | 1.3:+42566041 | MS.gene41081:CDS |
| CAAAAGTCAAGTAACAGCCC+TGG | 0.555813 | 1.3:+42565596 | MS.gene41081:CDS |
| ATCTTCTACGCCTGGTAATG+TGG | 0.558876 | 1.3:+42566406 | MS.gene41081:CDS |
| AGAGACTAGATGATCAGATA+AGG | 0.559999 | 1.3:+42567736 | MS.gene41081:CDS |
| CGGCGGCCGAATCTGTGCTC+CGG | 0.564361 | 1.3:-42564328 | None:intergenic |
| TCATAACGACAGCTACCAGC+AGG | 0.570121 | 1.3:-42565866 | None:intergenic |
| TAGGCCCTTAATATCTTCCT+CGG | 0.571156 | 1.3:-42568016 | None:intergenic |
| CCAACACCTATCTCAAATGC+TGG | 0.572738 | 1.3:+42565719 | MS.gene41081:CDS |
| GACCCTGAACTTGAAGCAAG+AGG | 0.573741 | 1.3:-42568627 | None:intergenic |
| GCATTTGAGATAGGTGTTGG+AGG | 0.574157 | 1.3:-42565716 | None:intergenic |
| TCATTACATTAGTGTATCCA+GGG | 0.578943 | 1.3:-42565613 | None:intergenic |
| ACAGCTAATGTTGATTGGAG+TGG | 0.580563 | 1.3:+42569156 | MS.gene41081:intron |
| GAGTTAGCATAACAGATATG+TGG | 0.583522 | 1.3:+42569019 | MS.gene41081:CDS |
| AAAGAACTCACCTGGAAGCA+AGG | 0.584852 | 1.3:-42568039 | None:intergenic |
| ATATCACCATCCACATTACC+AGG | 0.586810 | 1.3:-42566416 | None:intergenic |
| ATACTTACATCAGCATCTGA+AGG | 0.592246 | 1.3:-42568789 | None:intergenic |
| TACTATAGGTGCAAAAGAGG+AGG | 0.592536 | 1.3:+42566183 | MS.gene41081:intron |
| AAAGTATGATACTCATCAGT+CGG | 0.596002 | 1.3:-42564396 | None:intergenic |
| AACGCTGGACCTTCCGACCG+TGG | 0.596010 | 1.3:+42564291 | MS.gene41081:CDS |
| AACGCAAGATGACGCTTCAA+CGG | 0.597488 | 1.3:-42564348 | None:intergenic |
| AACGGCTTCATTGACATGAT+CGG | 0.597493 | 1.3:-42564445 | None:intergenic |
| CAGCTACCAGCAGGAGTGAG+CGG | 0.598273 | 1.3:-42565857 | None:intergenic |
| CTCAGGATCAGGAACTTCCA+AGG | 0.601233 | 1.3:-42568219 | None:intergenic |
| TCTACGCCTGGTAATGTGGA+TGG | 0.603037 | 1.3:+42566410 | MS.gene41081:CDS |
| TCCGCCGTAACCGTAATGTC+CGG | 0.603732 | 1.3:+42564267 | None:intergenic |
| CTTGGAAGTTCCTGATCCTG+AGG | 0.604439 | 1.3:+42568220 | MS.gene41081:CDS |
| AGCTCCGCATGGAACCACCT+TGG | 0.605657 | 1.3:+42568202 | MS.gene41081:CDS |
| AATGGAATGAATGAAAGTGA+AGG | 0.612614 | 1.3:+42565566 | MS.gene41081:CDS |
| CTGACTTTGAAATGCTCTCG+AGG | 0.615106 | 1.3:+42569196 | MS.gene41081:CDS |
| AACTCACCTGGAAGCAAGGT+AGG | 0.616174 | 1.3:-42568035 | None:intergenic |
| GCAAGATGACGCTTCAACGG+CGG | 0.616413 | 1.3:-42564345 | None:intergenic |
| TACTTACATCAGCATCTGAA+GGG | 0.619198 | 1.3:-42568788 | None:intergenic |
| TCTCCGCTGTAGTTCGTCAA+CGG | 0.627564 | 1.3:-42568342 | None:intergenic |
| CCATTTGCTCAAGCGTGCTG+AGG | 0.631281 | 1.3:+42566037 | MS.gene41081:CDS |
| ATAGCAATCAAAGCTCCGCA+TGG | 0.631816 | 1.3:+42568191 | MS.gene41081:CDS |
| AATCATTCTAAGGAGCACAA+TGG | 0.638536 | 1.3:+42568370 | MS.gene41081:CDS |
| AGCAAGAGGTAAGCTTGCGG+GGG | 0.640114 | 1.3:-42568613 | None:intergenic |
| GTTTCACAAGAGTTTGCTGG+GGG | 0.641606 | 1.3:+42568750 | MS.gene41081:CDS |
| ACTCCTTTGTCTGCAAAAGG+GGG | 0.643497 | 1.3:+42565650 | MS.gene41081:CDS |
| ACCTGCTGAATGCAGTGGAA+AGG | 0.654494 | 1.3:+42568677 | MS.gene41081:CDS |
| GCAAGAGGTAAGCTTGCGGG+GGG | 0.656380 | 1.3:-42568612 | None:intergenic |
| GGGAAGGGCAAACAAGTCAA+GGG | 0.657296 | 1.3:+42565670 | MS.gene41081:CDS |
| TGAAGCAAGAGGTAAGCTTG+CGG | 0.662777 | 1.3:-42568616 | None:intergenic |
| ATGGTACCTGCTGAATGCAG+TGG | 0.669987 | 1.3:+42568672 | MS.gene41081:CDS |
| TTAGGGTTAGCTACAGTCGA+TGG | 0.674010 | 1.3:-42569252 | None:intergenic |
| TCATCAGTCGGTGCAAACGG+TGG | 0.676716 | 1.3:-42564384 | None:intergenic |
| AGGCCGTTGACGAACTACAG+CGG | 0.677542 | 1.3:+42568339 | MS.gene41081:intron |
| TGTTTCACAAGAGTTTGCTG+GGG | 0.692916 | 1.3:+42568749 | MS.gene41081:CDS |
| TAATGTTGATTGGAGTGGAG+TGG | 0.694763 | 1.3:+42569161 | MS.gene41081:CDS |
| ACTTCCAAGGTGGTTCCATG+CGG | 0.714996 | 1.3:-42568206 | None:intergenic |
| GGTGGTGTAAGGTCATAAAG+CGG | 0.723032 | 1.3:+42565540 | MS.gene41081:intron |
| AGGATCAGGAACTTCCAAGG+TGG | 0.735853 | 1.3:-42568216 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTTCTTTTTAAATTATTAC+CGG | + | chr1.3:42565105-42565124 | MS.gene41081:intron | 10.0% |
| !!! | TAGAAAAAATGTATATATTT+TGG | - | chr1.3:42566309-42566328 | None:intergenic | 10.0% |
| !!! | TTTTTTTAGTATTTAATGAT+TGG | + | chr1.3:42568920-42568939 | MS.gene41081:intron | 10.0% |
| !!! | AAAATCTTTTGTATAGAATA+CGG | - | chr1.3:42566106-42566125 | None:intergenic | 15.0% |
| !! | AAATGAATCTAAGAACTAAA+TGG | - | chr1.3:42567903-42567922 | None:intergenic | 20.0% |
| !! | AAGTCATTCTAATTAATTTC+TGG | - | chr1.3:42567569-42567588 | None:intergenic | 20.0% |
| !! | AATGAATCTAAGAACTAAAT+GGG | - | chr1.3:42567902-42567921 | None:intergenic | 20.0% |
| !! | AATTAATTAGAATGACTTAG+TGG | + | chr1.3:42567571-42567590 | MS.gene41081:intron | 20.0% |
| !! | AGAAAAAGTAACAGATATAT+TGG | - | chr1.3:42566131-42566150 | None:intergenic | 20.0% |
| !! | ATATCAAGAACAGAATATAT+TGG | + | chr1.3:42566255-42566274 | MS.gene41081:CDS | 20.0% |
| !! | CAACTTGGTTTAATTAAAAT+TGG | + | chr1.3:42564785-42564804 | MS.gene41081:intron | 20.0% |
| !! | TAGATAAATGGAAAGTTAAT+CGG | - | chr1.3:42565757-42565776 | None:intergenic | 20.0% |
| !! | TCAAAAATTCCAAAATTAAC+TGG | - | chr1.3:42568541-42568560 | None:intergenic | 20.0% |
| !! | TTAAAATTATTTCCTAACAC+TGG | + | chr1.3:42564753-42564772 | MS.gene41081:intron | 20.0% |
| !! | TTGGTTTAATTAAAATTGGA+GGG | + | chr1.3:42564789-42564808 | MS.gene41081:intron | 20.0% |
| !! | TTTAAATTCTCCTATACTAT+AGG | + | chr1.3:42566169-42566188 | MS.gene41081:intron | 20.0% |
| !!! | AACAATGTTGATAATACAAA+TGG | - | chr1.3:42568091-42568110 | None:intergenic | 20.0% |
| !!! | AGAAAAGCATTAAAACAAAA+AGG | - | chr1.3:42569059-42569078 | None:intergenic | 20.0% |
| !!! | ATATGACATAACTAATGTTT+TGG | + | chr1.3:42566208-42566227 | MS.gene41081:CDS | 20.0% |
| !!! | TTATTTTTTGTGGAAATAGT+TGG | + | chr1.3:42564617-42564636 | MS.gene41081:intron | 20.0% |
| !!! | TTGTTTTCTCATATTGATAA+GGG | + | chr1.3:42566711-42566730 | MS.gene41081:intron | 20.0% |
| !!! | TTTGTATTGATTAAACACTT+CGG | + | chr1.3:42568880-42568899 | MS.gene41081:intron | 20.0% |
| ! | AATACTAAAAAAACAACTGC+AGG | - | chr1.3:42568913-42568932 | None:intergenic | 25.0% |
| ! | AATATGTTGTGATAAGGATA+AGG | + | chr1.3:42567377-42567396 | MS.gene41081:intron | 25.0% |
| ! | ACCTAAAAGGAATTGAAAAT+TGG | - | chr1.3:42567984-42568003 | None:intergenic | 25.0% |
| ! | AGATAAATGGAAAGTTAATC+GGG | - | chr1.3:42565756-42565775 | None:intergenic | 25.0% |
| ! | AGGAGAATTTAAATTCATGT+AGG | - | chr1.3:42566162-42566181 | None:intergenic | 25.0% |
| ! | ATTGTATAACAATTAGTTCC+AGG | - | chr1.3:42566495-42566514 | None:intergenic | 25.0% |
| ! | CTTATTGTTTATGAACATGT+TGG | + | chr1.3:42565519-42565538 | MS.gene41081:intron | 25.0% |
| ! | CTTGGTTTAATTAAAATTGG+AGG | + | chr1.3:42564788-42564807 | MS.gene41081:intron | 25.0% |
| ! | GAGAAATTTGAAGAGATTAA+TGG | + | chr1.3:42568582-42568601 | MS.gene41081:CDS | 25.0% |
| ! | TACACTAATACATATCTAGA+AGG | - | chr1.3:42565946-42565965 | None:intergenic | 25.0% |
| ! | TGATAGCATCAATATAAACA+TGG | - | chr1.3:42566618-42566637 | None:intergenic | 25.0% |
| ! | TGATGCTATCAATATTGAAA+AGG | + | chr1.3:42566627-42566646 | MS.gene41081:intron | 25.0% |
| ! | TTGAACATAACGTAGATAAA+TGG | - | chr1.3:42565769-42565788 | None:intergenic | 25.0% |
| !! | AATAACAATACTTTTCCTTC+TGG | - | chr1.3:42567942-42567961 | None:intergenic | 25.0% |
| !! | AATTGTGTCGAAAACATTTT+CGG | + | chr1.3:42564858-42564877 | MS.gene41081:intron | 25.0% |
| !! | ACCAATTTTCAATTCCTTTT+AGG | + | chr1.3:42567980-42567999 | MS.gene41081:intron | 25.0% |
| !! | CTTTTGAACCATTATTAACA+GGG | + | chr1.3:42567820-42567839 | MS.gene41081:intron | 25.0% |
| !! | TAGATATTTGAAACTGAGTT+TGG | + | chr1.3:42567443-42567462 | MS.gene41081:intron | 25.0% |
| !! | TATGTATATCAAGTTGTTAG+AGG | + | chr1.3:42567495-42567514 | MS.gene41081:intron | 25.0% |
| !! | TGAAAAGGATTAGTAATGAA+AGG | + | chr1.3:42566642-42566661 | MS.gene41081:intron | 25.0% |
| !! | TGTATGATTAATTGCTACTT+TGG | + | chr1.3:42565410-42565429 | MS.gene41081:intron | 25.0% |
| !! | TTATGAACTCTTTTCATTTG+TGG | + | chr1.3:42565314-42565333 | MS.gene41081:intron | 25.0% |
| !!! | GTTGATAATACAAATGGAAA+AGG | - | chr1.3:42568085-42568104 | None:intergenic | 25.0% |
| !!! | GTTGTTTTCTCATATTGATA+AGG | + | chr1.3:42566710-42566729 | MS.gene41081:intron | 25.0% |
| !!! | GTTTTACATGCTTTTGATTT+TGG | + | chr1.3:42564646-42564665 | MS.gene41081:intron | 25.0% |
| !!! | TGCTTTTGATTTTGGTTTAT+CGG | + | chr1.3:42564654-42564673 | MS.gene41081:intron | 25.0% |
| !!! | TTGTTTTTGCATGTTGATAA+GGG | + | chr1.3:42567420-42567439 | MS.gene41081:intron | 25.0% |
| !!! | TTTGTTTTTGCATGTTGATA+AGG | + | chr1.3:42567419-42567438 | MS.gene41081:intron | 25.0% |
| AAAGGATAGTATCAATCTCT+TGG | + | chr1.3:42566660-42566679 | MS.gene41081:intron | 30.0% | |
| AAAGTATGATACTCATCAGT+CGG | - | chr1.3:42564399-42564418 | None:intergenic | 30.0% | |
| AACATTCTCCTCTAACATAT+GGG | - | chr1.3:42567216-42567235 | None:intergenic | 30.0% | |
| AACTTATACAAGAACTTCAC+AGG | + | chr1.3:42565993-42566012 | MS.gene41081:intron | 30.0% | |
| AATCTCAATAACAGCATGAA+AGG | - | chr1.3:42568121-42568140 | None:intergenic | 30.0% | |
| AATGGAATGAATGAAAGTGA+AGG | + | chr1.3:42565566-42565585 | MS.gene41081:CDS | 30.0% | |
| AATTCTTACATCAAACCTTG+TGG | + | chr1.3:42566367-42566386 | MS.gene41081:intron | 30.0% | |
| ACACACACACATCAATATAT+CGG | - | chr1.3:42565469-42565488 | None:intergenic | 30.0% | |
| ACATCAATATATCGGTGAAA+TGG | - | chr1.3:42565461-42565480 | None:intergenic | 30.0% | |
| ACTAAATGGGAAATTACTTC+TGG | - | chr1.3:42567889-42567908 | None:intergenic | 30.0% | |
| AGTATCAATCTCTTGGAATA+AGG | + | chr1.3:42566667-42566686 | MS.gene41081:intron | 30.0% | |
| AGTGTCAATATGTTGTGATA+AGG | + | chr1.3:42567371-42567390 | MS.gene41081:intron | 30.0% | |
| AGTTCATTAAGTCTAATGCT+TGG | + | chr1.3:42564988-42565007 | MS.gene41081:intron | 30.0% | |
| ATACATATCTAGAAGGTGAA+TGG | - | chr1.3:42565939-42565958 | None:intergenic | 30.0% | |
| ATTGCTTCCAAAATTACCTA+AGG | - | chr1.3:42565897-42565916 | None:intergenic | 30.0% | |
| ATTGTTTATGAACATGTTGG+TGG | + | chr1.3:42565522-42565541 | MS.gene41081:intron | 30.0% | |
| CAGCAAATAGACATTATAGT+TGG | - | chr1.3:42566555-42566574 | None:intergenic | 30.0% | |
| CTCTTCAAATTGACTGAAAA+CGG | - | chr1.3:42568565-42568584 | None:intergenic | 30.0% | |
| GATGATCAGATAAGGTTATA+TGG | + | chr1.3:42567744-42567763 | MS.gene41081:intron | 30.0% | |
| GGAGATATAGAATCATTCTA+AGG | + | chr1.3:42568360-42568379 | MS.gene41081:CDS | 30.0% | |
| GTATCAATCTCTTGGAATAA+GGG | + | chr1.3:42566668-42566687 | MS.gene41081:intron | 30.0% | |
| TACATATCTAGAAGGTGAAT+GGG | - | chr1.3:42565938-42565957 | None:intergenic | 30.0% | |
| TATAGTTTCTTATGGCATGT+AGG | + | chr1.3:42565824-42565843 | MS.gene41081:intron | 30.0% | |
| TCATTACATTAGTGTATCCA+GGG | - | chr1.3:42565616-42565635 | None:intergenic | 30.0% | |
| TGAATGTTGTAACTCAAACT+AGG | + | chr1.3:42567247-42567266 | MS.gene41081:intron | 30.0% | |
| TGATTATGTGCAAAAATGTG+TGG | + | chr1.3:42565166-42565185 | MS.gene41081:intron | 30.0% | |
| TTAATGCTTCCATATGCATT+AGG | + | chr1.3:42568319-42568338 | MS.gene41081:intron | 30.0% | |
| TTACAACATTCAACTAGTTG+TGG | - | chr1.3:42567239-42567258 | None:intergenic | 30.0% | |
| TTCATTACATTAGTGTATCC+AGG | - | chr1.3:42565617-42565636 | None:intergenic | 30.0% | |
| TTGCATTTCCCTGTTAATAA+TGG | - | chr1.3:42567831-42567850 | None:intergenic | 30.0% | |
| TTTACTTAGAAACAATCCCA+GGG | - | chr1.3:42566993-42567012 | None:intergenic | 30.0% | |
| ! | ATGCATTCTCCAGTTAATTT+TGG | + | chr1.3:42568529-42568548 | MS.gene41081:intron | 30.0% |
| ! | GCTTTTGAACCATTATTAAC+AGG | + | chr1.3:42567819-42567838 | MS.gene41081:intron | 30.0% |
| ! | GGTTGCTTTATATCACAAAA+AGG | + | chr1.3:42567765-42567784 | MS.gene41081:intron | 30.0% |
| ! | TGCAAAAATGTGTGGATTTT+CGG | + | chr1.3:42565174-42565193 | MS.gene41081:intron | 30.0% |
| ! | TGTAGAATGATGCTGATTAT+TGG | + | chr1.3:42568980-42568999 | MS.gene41081:intron | 30.0% |
| ! | TGTGTGTGTTACTAATATGT+AGG | - | chr1.3:42568443-42568462 | None:intergenic | 30.0% |
| !! | AGATGTTTTTGTTATGTGTG+TGG | + | chr1.3:42565258-42565277 | MS.gene41081:intron | 30.0% |
| !! | GACATAACTAATGTTTTGGA+AGG | + | chr1.3:42566212-42566231 | MS.gene41081:CDS | 30.0% |
| !! | GCTTTGAAATTTCACTAGTA+TGG | + | chr1.3:42564822-42564841 | MS.gene41081:intron | 30.0% |
| AAAACTCCTTTGTCTGCAAA+AGG | + | chr1.3:42565647-42565666 | MS.gene41081:CDS | 35.0% | |
| AAACTCCTTTGTCTGCAAAA+GGG | + | chr1.3:42565648-42565667 | MS.gene41081:CDS | 35.0% | |
| AACTTGATTACTTTGTGGTC+TGG | - | chr1.3:42567071-42567090 | None:intergenic | 35.0% | |
| AATGTTTCACAAGAGTTTGC+TGG | + | chr1.3:42568747-42568766 | MS.gene41081:CDS | 35.0% | |
| AATTAGTTCCAGGTGTCAAT+AGG | - | chr1.3:42566485-42566504 | None:intergenic | 35.0% | |
| AGAGACTAGATGATCAGATA+AGG | + | chr1.3:42567736-42567755 | MS.gene41081:CDS | 35.0% | |
| ATACTTACATCAGCATCTGA+AGG | - | chr1.3:42568792-42568811 | None:intergenic | 35.0% | |
| ATCAACATTAGCTGTTATGC+TGG | - | chr1.3:42569151-42569170 | None:intergenic | 35.0% | |
| ATCCTGAGGAAGTAAGTTTA+GGG | + | chr1.3:42568234-42568253 | MS.gene41081:intron | 35.0% | |
| ATTAAGTCTAATGCTTGGCT+TGG | + | chr1.3:42564993-42565012 | MS.gene41081:intron | 35.0% | |
| ATTAGAATGACTTAGTGGCA+TGG | + | chr1.3:42567576-42567595 | MS.gene41081:intron | 35.0% | |
| CAATTGATGTCTACCTTATC+AGG | + | chr1.3:42568396-42568415 | MS.gene41081:CDS | 35.0% | |
| CCAATTAACAACATGTTGCA+AGG | - | chr1.3:42567657-42567676 | None:intergenic | 35.0% | |
| CCATAAGAAACTATAAGCTG+GGG | - | chr1.3:42565819-42565838 | None:intergenic | 35.0% | |
| CCTTGCAACATGTTGTTAAT+TGG | + | chr1.3:42567654-42567673 | MS.gene41081:intron | 35.0% | |
| CGGATAAGATTACTGTACAT+TGG | + | chr1.3:42565197-42565216 | MS.gene41081:intron | 35.0% | |
| CGGATACTATTGTTGTACAT+TGG | + | chr1.3:42564881-42564900 | MS.gene41081:intron | 35.0% | |
| CTAGTGAAATTTCAAAGCCT+CGG | - | chr1.3:42564820-42564839 | None:intergenic | 35.0% | |
| CTATACTATAGGTGCAAAAG+AGG | + | chr1.3:42566180-42566199 | MS.gene41081:intron | 35.0% | |
| CTGATAAGGTAGACATCAAT+TGG | - | chr1.3:42568398-42568417 | None:intergenic | 35.0% | |
| GAACATTCTCCTCTAACATA+TGG | - | chr1.3:42567217-42567236 | None:intergenic | 35.0% | |
| GAGTTAGCATAACAGATATG+TGG | + | chr1.3:42569019-42569038 | MS.gene41081:CDS | 35.0% | |
| GCAAGTAGTTATACCTGATA+AGG | - | chr1.3:42568412-42568431 | None:intergenic | 35.0% | |
| GCATAACAGCTAATGTTGAT+TGG | + | chr1.3:42569151-42569170 | MS.gene41081:intron | 35.0% | |
| GCCATAAGAAACTATAAGCT+GGG | - | chr1.3:42565820-42565839 | None:intergenic | 35.0% | |
| GCTCTAACTTGATTACTTTG+TGG | - | chr1.3:42567076-42567095 | None:intergenic | 35.0% | |
| GTCACAAAAAGGAACCTAAA+AGG | - | chr1.3:42567997-42568016 | None:intergenic | 35.0% | |
| GTTTACTTAGAAACAATCCC+AGG | - | chr1.3:42566994-42567013 | None:intergenic | 35.0% | |
| TAAAACGAAGAAGAACACAC+CGG | - | chr1.3:42564483-42564502 | None:intergenic | 35.0% | |
| TACTTACATCAGCATCTGAA+GGG | - | chr1.3:42568791-42568810 | None:intergenic | 35.0% | |
| TGCCATAAGAAACTATAAGC+TGG | - | chr1.3:42565821-42565840 | None:intergenic | 35.0% | |
| TGGAAATGAATATACACGAG+CGG | - | chr1.3:42566535-42566554 | None:intergenic | 35.0% | |
| TGGTGATATCTCTTTGCTTA+AGG | + | chr1.3:42566430-42566449 | MS.gene41081:CDS | 35.0% | |
| TTAGGGAATCAACTGATGAA+AGG | + | chr1.3:42568251-42568270 | MS.gene41081:intron | 35.0% | |
| TTCATAAACTTTGAGTGCCT+TGG | + | chr1.3:42565281-42565300 | MS.gene41081:intron | 35.0% | |
| TTCATAAGTGAGCATTACCA+AGG | - | chr1.3:42565301-42565320 | None:intergenic | 35.0% | |
| TTGAATTCAGATCCAGTGTT+AGG | - | chr1.3:42564768-42564787 | None:intergenic | 35.0% | |
| TTGATGTGTGTGTGTATCTT+TGG | + | chr1.3:42565474-42565493 | MS.gene41081:intron | 35.0% | |
| TTGATTAAACACTTCGGATG+CGG | + | chr1.3:42568886-42568905 | MS.gene41081:intron | 35.0% | |
| TTGCTGCACTCAACATTTAA+CGG | + | chr1.3:42566569-42566588 | MS.gene41081:intron | 35.0% | |
| ! | AAAAATGTGTGGATTTTCGG+CGG | + | chr1.3:42565177-42565196 | MS.gene41081:intron | 35.0% |
| ! | AAAGCTTTTCTGTCTCAATG+GGG | + | chr1.3:42566856-42566875 | MS.gene41081:intron | 35.0% |
| ! | AATCATTCTAAGGAGCACAA+TGG | + | chr1.3:42568370-42568389 | MS.gene41081:CDS | 35.0% |
| ! | ACAATACTTTTCCTTCTGGA+AGG | - | chr1.3:42567938-42567957 | None:intergenic | 35.0% |
| ! | ATCATTCTAAGGAGCACAAT+GGG | + | chr1.3:42568371-42568390 | MS.gene41081:CDS | 35.0% |
| ! | ATGTTTCACAAGAGTTTGCT+GGG | + | chr1.3:42568748-42568767 | MS.gene41081:CDS | 35.0% |
| ! | CAAAGCTTTTCTGTCTCAAT+GGG | + | chr1.3:42566855-42566874 | MS.gene41081:intron | 35.0% |
| ! | CTAGTGTTTCTGATACATGA+TGG | + | chr1.3:42568292-42568311 | MS.gene41081:intron | 35.0% |
| ! | CTCTTTTGCACCTATAGTAT+AGG | - | chr1.3:42566182-42566201 | None:intergenic | 35.0% |
| ! | GACAGTTCCTTAGGTAATTT+TGG | + | chr1.3:42565887-42565906 | MS.gene41081:intron | 35.0% |
| ! | TCAAAGCTTTTCTGTCTCAA+TGG | + | chr1.3:42566854-42566873 | MS.gene41081:intron | 35.0% |
| !!! | ACTAATGTTTTGGAAGGCAT+TGG | + | chr1.3:42566218-42566237 | MS.gene41081:CDS | 35.0% |
| AAACTTACTTCCTCAGGATC+AGG | - | chr1.3:42568233-42568252 | None:intergenic | 40.0% | |
| AACGGCTTCATTGACATGAT+CGG | - | chr1.3:42564448-42564467 | None:intergenic | 40.0% | |
| AACTCCTTTGTCTGCAAAAG+GGG | + | chr1.3:42565649-42565668 | MS.gene41081:CDS | 40.0% | |
| AAGGTCATAAAGCGGAAGAA+TGG | + | chr1.3:42565548-42565567 | MS.gene41081:intron | 40.0% | |
| ACATGTTGTTAATTGGCTGC+TGG | + | chr1.3:42567661-42567680 | MS.gene41081:intron | 40.0% | |
| AGCCGTTATTGTTAGATCTC+CGG | + | chr1.3:42564461-42564480 | MS.gene41081:CDS | 40.0% | |
| ATATCACCATCCACATTACC+AGG | - | chr1.3:42566419-42566438 | None:intergenic | 40.0% | |
| ATTACTTTGTGGTCTGGCAT+TGG | - | chr1.3:42567065-42567084 | None:intergenic | 40.0% | |
| CACCGGAGATCTAACAATAA+CGG | - | chr1.3:42564466-42564485 | None:intergenic | 40.0% | |
| CACTGGATCTGAATTCAACT+TGG | + | chr1.3:42564770-42564789 | MS.gene41081:intron | 40.0% | |
| CAGAAACATTGAGTAGACAG+AGG | + | chr1.3:42567013-42567032 | MS.gene41081:intron | 40.0% | |
| CCCCAGCTTATAGTTTCTTA+TGG | + | chr1.3:42565816-42565835 | MS.gene41081:intron | 40.0% | |
| CGAGTGTGTGTTTGTTTGAT+AGG | + | chr1.3:42564962-42564981 | MS.gene41081:intron | 40.0% | |
| CTCAAACTTTCTCTCTCCTA+TGG | - | chr1.3:42566770-42566789 | None:intergenic | 40.0% | |
| GAATTATGTTGTCAGCCTTG+TGG | + | chr1.3:42567615-42567634 | MS.gene41081:intron | 40.0% | |
| GATCCTGAGGAAGTAAGTTT+AGG | + | chr1.3:42568233-42568252 | MS.gene41081:intron | 40.0% | |
| GCAAAAACAAAGAACTCACC+TGG | - | chr1.3:42568050-42568069 | None:intergenic | 40.0% | |
| GTCAGTGCTTCATAGATACT+TGG | + | chr1.3:42565143-42565162 | MS.gene41081:intron | 40.0% | |
| GTGACCGAGGAAGATATTAA+GGG | + | chr1.3:42568012-42568031 | MS.gene41081:CDS | 40.0% | |
| TAAAGCAGCAGAAACTTTGC+AGG | + | chr1.3:42566079-42566098 | MS.gene41081:CDS | 40.0% | |
| TACTATAGGTGCAAAAGAGG+AGG | + | chr1.3:42566183-42566202 | MS.gene41081:intron | 40.0% | |
| TAGCTGTTATGCTGGAGTTA+AGG | - | chr1.3:42569143-42569162 | None:intergenic | 40.0% | |
| TAGGCCCTTAATATCTTCCT+CGG | - | chr1.3:42568019-42568038 | None:intergenic | 40.0% | |
| TATCTTCCTCGGTCACAAAA+AGG | - | chr1.3:42568008-42568027 | None:intergenic | 40.0% | |
| TGAGCAACAAGTGACAGAAA+TGG | + | chr1.3:42568653-42568672 | MS.gene41081:CDS | 40.0% | |
| TGTCGTTATGACAGTTCCTT+AGG | + | chr1.3:42565878-42565897 | MS.gene41081:CDS | 40.0% | |
| TGTGACCGAGGAAGATATTA+AGG | + | chr1.3:42568011-42568030 | MS.gene41081:CDS | 40.0% | |
| TTCCCTAAACTTACTTCCTC+AGG | - | chr1.3:42568239-42568258 | None:intergenic | 40.0% | |
| ! | AAAATTGGAGGGATTTTCCG+AGG | + | chr1.3:42564800-42564819 | MS.gene41081:intron | 40.0% |
| ! | AAGTATATCACAGCCTTGTG+AGG | + | chr1.3:42568806-42568825 | MS.gene41081:intron | 40.0% |
| ! | ACAGCTAATGTTGATTGGAG+TGG | + | chr1.3:42569156-42569175 | MS.gene41081:intron | 40.0% |
| ! | AGGACATGATTTGCCTTCTT+TGG | - | chr1.3:42565699-42565718 | None:intergenic | 40.0% |
| ! | AGTATATCACAGCCTTGTGA+GGG | + | chr1.3:42568807-42568826 | MS.gene41081:intron | 40.0% |
| ! | CACTTCATACTGGGGATTTT+GGG | + | chr1.3:42568839-42568858 | MS.gene41081:intron | 40.0% |
| ! | CCAGGGTACTTGATAAAACT+TGG | + | chr1.3:42567299-42567318 | MS.gene41081:intron | 40.0% |
| ! | TAATGTTGATTGGAGTGGAG+TGG | + | chr1.3:42569161-42569180 | MS.gene41081:CDS | 40.0% |
| ! | TACCTCTTGCTTCAAGTTCA+GGG | + | chr1.3:42568625-42568644 | MS.gene41081:CDS | 40.0% |
| ! | TGTGTCGAAAACATTTTCGG+CGG | + | chr1.3:42564861-42564880 | MS.gene41081:intron | 40.0% |
| ! | TTACCTCTTGCTTCAAGTTC+AGG | + | chr1.3:42568624-42568643 | MS.gene41081:CDS | 40.0% |
| ! | TTAGAGGCACATGTATGCAA+AGG | + | chr1.3:42567511-42567530 | MS.gene41081:intron | 40.0% |
| ! | TTCTGACCAGCATTTGAGAT+AGG | - | chr1.3:42565728-42565747 | None:intergenic | 40.0% |
| !! | AGAAGCACTAGAAACTCCAT+AGG | + | chr1.3:42566751-42566770 | MS.gene41081:intron | 40.0% |
| !! | AGTTCTAAGTCAAAGCCACA+AGG | - | chr1.3:42567633-42567652 | None:intergenic | 40.0% |
| !! | ATACTTTTCCTTCTGGAAGG+AGG | - | chr1.3:42567935-42567954 | None:intergenic | 40.0% |
| !! | ATGAACATGTTGGTGGTGTA+AGG | + | chr1.3:42565529-42565548 | MS.gene41081:intron | 40.0% |
| !! | CCAAGTTTTATCAAGTACCC+TGG | - | chr1.3:42567302-42567321 | None:intergenic | 40.0% |
| !! | GTATCTATGAAGCACTGACA+CGG | - | chr1.3:42565142-42565161 | None:intergenic | 40.0% |
| !! | TATTGGCTTCTATCAGATGC+TGG | + | chr1.3:42568997-42569016 | MS.gene41081:CDS | 40.0% |
| !! | TGCAGACAAAGGAGTTTTGA+AGG | - | chr1.3:42565645-42565664 | None:intergenic | 40.0% |
| !! | TGTTTCACAAGAGTTTGCTG+GGG | + | chr1.3:42568749-42568768 | MS.gene41081:CDS | 40.0% |
| !!! | AGCACTGACACTTTTACCAA+AGG | + | chr1.3:42565017-42565036 | MS.gene41081:intron | 40.0% |
| !!! | CAGACAAAGGAGTTTTGAAG+GGG | - | chr1.3:42565643-42565662 | None:intergenic | 40.0% |
| !!! | GCAGACAAAGGAGTTTTGAA+GGG | - | chr1.3:42565644-42565663 | None:intergenic | 40.0% |
| AAAGAACTCACCTGGAAGCA+AGG | - | chr1.3:42568042-42568061 | None:intergenic | 45.0% | |
| AAATCCCCAGTATGAAGTGG+AGG | - | chr1.3:42568838-42568857 | None:intergenic | 45.0% | |
| AACGCAAGATGACGCTTCAA+CGG | - | chr1.3:42564351-42564370 | None:intergenic | 45.0% | |
| AATCCCCAGTATGAAGTGGA+GGG | - | chr1.3:42568837-42568856 | None:intergenic | 45.0% | |
| ACATTACCTCCTCAAGCTCA+GGG | + | chr1.3:42566947-42566966 | MS.gene41081:intron | 45.0% | |
| ACGGCTGTCATCAATGTTTG+AGG | + | chr1.3:42567124-42567143 | MS.gene41081:intron | 45.0% | |
| ACTCCTTTGTCTGCAAAAGG+GGG | + | chr1.3:42565650-42565669 | MS.gene41081:CDS | 45.0% | |
| AGAAGACCTGCAAAGTGAAC+GGG | + | chr1.3:42567162-42567181 | MS.gene41081:intron | 45.0% | |
| AGCAGAAGCCCATATGTTAG+AGG | + | chr1.3:42567205-42567224 | MS.gene41081:intron | 45.0% | |
| AGCATGGGGATTATGTGAGA+TGG | - | chr1.3:42567326-42567345 | None:intergenic | 45.0% | |
| AGGTCTTCTGTGATGCTGAT+TGG | - | chr1.3:42567151-42567170 | None:intergenic | 45.0% | |
| ATAGCAATCAAAGCTCCGCA+TGG | + | chr1.3:42568191-42568210 | MS.gene41081:CDS | 45.0% | |
| CAAAAGTCAAGTAACAGCCC+TGG | + | chr1.3:42565596-42565615 | MS.gene41081:CDS | 45.0% | |
| CAGAAGACCTGCAAAGTGAA+CGG | + | chr1.3:42567161-42567180 | MS.gene41081:intron | 45.0% | |
| CCAAAATCCCCAGTATGAAG+TGG | - | chr1.3:42568841-42568860 | None:intergenic | 45.0% | |
| CCAACACCTATCTCAAATGC+TGG | + | chr1.3:42565719-42565738 | MS.gene41081:CDS | 45.0% | |
| CCAACATGAGGGAAAGAAAG+AGG | + | chr1.3:42567346-42567365 | MS.gene41081:intron | 45.0% | |
| CCTCTTTCTTTCCCTCATGT+TGG | - | chr1.3:42567349-42567368 | None:intergenic | 45.0% | |
| CTATAAGCTGGGGTACAACA+AGG | - | chr1.3:42565809-42565828 | None:intergenic | 45.0% | |
| GCACTCAACATTTAACGGCT+CGG | + | chr1.3:42566574-42566593 | MS.gene41081:intron | 45.0% | |
| GCATGGGGATTATGTGAGAT+GGG | - | chr1.3:42567325-42567344 | None:intergenic | 45.0% | |
| GGAAGTTGACAACCTTTCTC+TGG | + | chr1.3:42567707-42567726 | MS.gene41081:CDS | 45.0% | |
| GGAATTGAATCTTCTACGCC+TGG | + | chr1.3:42566398-42566417 | MS.gene41081:CDS | 45.0% | |
| GGTGGTGTAAGGTCATAAAG+CGG | + | chr1.3:42565540-42565559 | MS.gene41081:intron | 45.0% | |
| TAACCCGAAGATCAGTACCA+GGG | + | chr1.3:42567282-42567301 | MS.gene41081:intron | 45.0% | |
| TACATTACCTCCTCAAGCTC+AGG | + | chr1.3:42566946-42566965 | MS.gene41081:intron | 45.0% | |
| TACTCATCAGTCGGTGCAAA+CGG | - | chr1.3:42564390-42564409 | None:intergenic | 45.0% | |
| TCTGCGGCATGCATTTGTAT+TGG | - | chr1.3:42567098-42567117 | None:intergenic | 45.0% | |
| TCTTGAGACCTATTGACACC+TGG | + | chr1.3:42566474-42566493 | MS.gene41081:intron | 45.0% | |
| TGAAGCAAGAGGTAAGCTTG+CGG | - | chr1.3:42568619-42568638 | None:intergenic | 45.0% | |
| TGAGCTAGTGGTGGTTATTC+AGG | - | chr1.3:42566827-42566846 | None:intergenic | 45.0% | |
| TGATTCATAGGCAGTACCCT+GGG | + | chr1.3:42566974-42566993 | MS.gene41081:intron | 45.0% | |
| TTGATTCATAGGCAGTACCC+TGG | + | chr1.3:42566973-42566992 | MS.gene41081:intron | 45.0% | |
| TTTCCCTCATGTTGGAGCAT+GGG | - | chr1.3:42567341-42567360 | None:intergenic | 45.0% | |
| TTTGTCTGCAAAAGGGGGAA+GGG | + | chr1.3:42565655-42565674 | MS.gene41081:CDS | 45.0% | |
| ! | ATCTTCTACGCCTGGTAATG+TGG | + | chr1.3:42566406-42566425 | MS.gene41081:CDS | 45.0% |
| ! | CCACTTCATACTGGGGATTT+TGG | + | chr1.3:42568838-42568857 | MS.gene41081:intron | 45.0% |
| ! | CCAGCATTTGAGATAGGTGT+TGG | - | chr1.3:42565722-42565741 | None:intergenic | 45.0% |
| ! | TAGGTTCCTTTTTGTGACCG+AGG | + | chr1.3:42567999-42568018 | MS.gene41081:intron | 45.0% |
| !! | AAGTCAAGGGCATCCAAAGA+AGG | + | chr1.3:42565683-42565702 | MS.gene41081:CDS | 45.0% |
| !! | ACTTTTACCAAAGGCGTGTC+TGG | + | chr1.3:42565026-42565045 | MS.gene41081:intron | 45.0% |
| !! | AGTACCCTGGTACTGATCTT+CGG | - | chr1.3:42567289-42567308 | None:intergenic | 45.0% |
| !! | CTCGAGAGCATTTCAAAGTC+AGG | - | chr1.3:42569198-42569217 | None:intergenic | 45.0% |
| !! | CTGACTTTGAAATGCTCTCG+AGG | + | chr1.3:42569196-42569215 | MS.gene41081:CDS | 45.0% |
| !! | CTTTCGCTGCTGTTGATTCT+AGG | + | chr1.3:42564415-42564434 | MS.gene41081:CDS | 45.0% |
| !! | GCATTTGAGATAGGTGTTGG+AGG | - | chr1.3:42565719-42565738 | None:intergenic | 45.0% |
| !! | GTTTCACAAGAGTTTGCTGG+GGG | + | chr1.3:42568750-42568769 | MS.gene41081:CDS | 45.0% |
| !! | TTAGGGTTAGCTACAGTCGA+TGG | - | chr1.3:42569255-42569274 | None:intergenic | 45.0% |
| !! | TTGTGGCTTTGTCTTGCAGT+CGG | + | chr1.3:42567686-42567705 | MS.gene41081:intron | 45.0% |
| !!! | TTTTTTATTTTTATTTTTTG+TGG | + | chr1.3:42564607-42564626 | MS.gene41081:intron | 5.0% |
| AACTCACCTGGAAGCAAGGT+AGG | - | chr1.3:42568038-42568057 | None:intergenic | 50.0% | |
| AAGCAAGAGGTAAGCTTGCG+GGG | - | chr1.3:42568617-42568636 | None:intergenic | 50.0% | |
| AATCAACCACCCTGAGCTTG+AGG | - | chr1.3:42566959-42566978 | None:intergenic | 50.0% | |
| AATCCCCATGCTCCAACATG+AGG | + | chr1.3:42567334-42567353 | MS.gene41081:intron | 50.0% | |
| ACCTGCTGAATGCAGTGGAA+AGG | + | chr1.3:42568677-42568696 | MS.gene41081:CDS | 50.0% | |
| ACTTCCAAGGTGGTTCCATG+CGG | - | chr1.3:42568209-42568228 | None:intergenic | 50.0% | |
| AGGATCAGGAACTTCCAAGG+TGG | - | chr1.3:42568219-42568238 | None:intergenic | 50.0% | |
| ATCCCCAGTATGAAGTGGAG+GGG | - | chr1.3:42568836-42568855 | None:intergenic | 50.0% | |
| ATCCCCATGCTCCAACATGA+GGG | + | chr1.3:42567335-42567354 | MS.gene41081:intron | 50.0% | |
| ATGGTACCTGCTGAATGCAG+TGG | + | chr1.3:42568672-42568691 | MS.gene41081:CDS | 50.0% | |
| CAATTCCTCTGCATGCCACA+AGG | - | chr1.3:42566385-42566404 | None:intergenic | 50.0% | |
| CGTCAACGGCCTAATGCATA+TGG | - | chr1.3:42568331-42568350 | None:intergenic | 50.0% | |
| CTAACCCGAAGATCAGTACC+AGG | + | chr1.3:42567281-42567300 | MS.gene41081:intron | 50.0% | |
| CTATGACCCGTTCACTTTGC+AGG | - | chr1.3:42567171-42567190 | None:intergenic | 50.0% | |
| CTCAGGATCAGGAACTTCCA+AGG | - | chr1.3:42568222-42568241 | None:intergenic | 50.0% | |
| CTGCAAAGTGAACGGGTCAT+AGG | + | chr1.3:42567169-42567188 | MS.gene41081:intron | 50.0% | |
| CTTGGAAGTTCCTGATCCTG+AGG | + | chr1.3:42568220-42568239 | MS.gene41081:CDS | 50.0% | |
| CTTTCCCTCATGTTGGAGCA+TGG | - | chr1.3:42567342-42567361 | None:intergenic | 50.0% | |
| CTTTGTCTGCAAAAGGGGGA+AGG | + | chr1.3:42565654-42565673 | MS.gene41081:CDS | 50.0% | |
| GAAGCAAGAGGTAAGCTTGC+GGG | - | chr1.3:42568618-42568637 | None:intergenic | 50.0% | |
| GACCCTGAACTTGAAGCAAG+AGG | - | chr1.3:42568630-42568649 | None:intergenic | 50.0% | |
| GACTGCAAGACAAAGCCACA+AGG | - | chr1.3:42567687-42567706 | None:intergenic | 50.0% | |
| GGGAAGGGCAAACAAGTCAA+GGG | + | chr1.3:42565670-42565689 | MS.gene41081:CDS | 50.0% | |
| GTCTCTGCTCTTCCAGAGAA+AGG | - | chr1.3:42567722-42567741 | None:intergenic | 50.0% | |
| TAACCACCACTAGCTCACTG+AGG | + | chr1.3:42566830-42566849 | MS.gene41081:intron | 50.0% | |
| TCAAACACCAGACACGCCTT+TGG | - | chr1.3:42565036-42565055 | None:intergenic | 50.0% | |
| TCAAACCTTGTGGCATGCAG+AGG | + | chr1.3:42566377-42566396 | MS.gene41081:intron | 50.0% | |
| TCATAACGACAGCTACCAGC+AGG | - | chr1.3:42565869-42565888 | None:intergenic | 50.0% | |
| TCCTTTCCACTGCATTCAGC+AGG | - | chr1.3:42568681-42568700 | None:intergenic | 50.0% | |
| TCTCCGCTGTAGTTCGTCAA+CGG | - | chr1.3:42568345-42568364 | None:intergenic | 50.0% | |
| TGACAGCCGTTCTACTTCTG+CGG | - | chr1.3:42567114-42567133 | None:intergenic | 50.0% | |
| TGAGAAGAGAGCAGAGCTTG+AGG | - | chr1.3:42568711-42568730 | None:intergenic | 50.0% | |
| TGCATGCCGCAGAAGTAGAA+CGG | + | chr1.3:42567105-42567124 | MS.gene41081:intron | 50.0% | |
| TGCTTTGTCCTCCTTCCAGA+AGG | + | chr1.3:42567924-42567943 | MS.gene41081:intron | 50.0% | |
| TTCCCCCTCCACTTCATACT+GGG | + | chr1.3:42568830-42568849 | MS.gene41081:intron | 50.0% | |
| TTCCCTCATGTTGGAGCATG+GGG | - | chr1.3:42567340-42567359 | None:intergenic | 50.0% | |
| TTTGAGCCTCAGTGAGCTAG+TGG | - | chr1.3:42566839-42566858 | None:intergenic | 50.0% | |
| ! | CTTCCCCCTTTTGCAGACAA+AGG | - | chr1.3:42565656-42565675 | None:intergenic | 50.0% |
| ! | GCTCAGGGTGGTTGATTCAT+AGG | + | chr1.3:42566962-42566981 | MS.gene41081:intron | 50.0% |
| ! | TCTACGCCTGGTAATGTGGA+TGG | + | chr1.3:42566410-42566429 | MS.gene41081:CDS | 50.0% |
| ! | TTAACGGCTCGGACTCTTGT+TGG | + | chr1.3:42566585-42566604 | MS.gene41081:intron | 50.0% |
| !! | GGTACTGATCTTCGGGTTAG+TGG | - | chr1.3:42567281-42567300 | None:intergenic | 50.0% |
| !! | GTACCCTGGTACTGATCTTC+GGG | - | chr1.3:42567288-42567307 | None:intergenic | 50.0% |
| !! | TTAATTGGCTGCTGGCCTTG+TGG | + | chr1.3:42567669-42567688 | MS.gene41081:intron | 50.0% |
| AGCAAGAGGTAAGCTTGCGG+GGG | - | chr1.3:42568616-42568635 | None:intergenic | 55.0% | |
| AGGCCGTTGACGAACTACAG+CGG | + | chr1.3:42568339-42568358 | MS.gene41081:intron | 55.0% | |
| CCATTTGCTCAAGCGTGCTG+AGG | + | chr1.3:42566037-42566056 | MS.gene41081:CDS | 55.0% | |
| CCTCAGCACGCTTGAGCAAA+TGG | - | chr1.3:42566040-42566059 | None:intergenic | 55.0% | |
| GCAAGATGACGCTTCAACGG+CGG | - | chr1.3:42564348-42564367 | None:intergenic | 55.0% | |
| GGGGAAGGGCAAACAAGTCA+AGG | + | chr1.3:42565669-42565688 | MS.gene41081:CDS | 55.0% | |
| GTTCCCCCTCCACTTCATAC+TGG | + | chr1.3:42568829-42568848 | MS.gene41081:intron | 55.0% | |
| TAAGGGCCTACCTTGCTTCC+AGG | + | chr1.3:42568029-42568048 | MS.gene41081:CDS | 55.0% | |
| TCATCAGTCGGTGCAAACGG+TGG | - | chr1.3:42564387-42564406 | None:intergenic | 55.0% | |
| TCCCCAGTATGAAGTGGAGG+GGG | - | chr1.3:42568835-42568854 | None:intergenic | 55.0% | |
| TCCCCCTCCACTTCATACTG+GGG | + | chr1.3:42568831-42568850 | MS.gene41081:intron | 55.0% | |
| TTACCTCCTCAAGCTCAGGG+TGG | + | chr1.3:42566950-42566969 | MS.gene41081:intron | 55.0% | |
| TTGCTCAAGCGTGCTGAGGA+TGG | + | chr1.3:42566041-42566060 | MS.gene41081:CDS | 55.0% | |
| AACTCCATCGCCGGGACTTG+CGG | + | chr1.3:42569224-42569243 | MS.gene41081:CDS | 60.0% | |
| AGCAGGAGTGAGCGGAGAAG+GGG | - | chr1.3:42565852-42565871 | None:intergenic | 60.0% | |
| AGCTCCGCATGGAACCACCT+TGG | + | chr1.3:42568202-42568221 | MS.gene41081:CDS | 60.0% | |
| AGGCCACAAACTCCATCGCC+GGG | + | chr1.3:42569216-42569235 | MS.gene41081:CDS | 60.0% | |
| AGTCCCGGCGATGGAGTTTG+TGG | - | chr1.3:42569222-42569241 | None:intergenic | 60.0% | |
| ATCTGTGCTCCGGTCGGCAT+CGG | - | chr1.3:42564321-42564340 | None:intergenic | 60.0% | |
| CAACCACCCTGAGCTTGAGG+AGG | - | chr1.3:42566956-42566975 | None:intergenic | 60.0% | |
| CAGCAGGAGTGAGCGGAGAA+GGG | - | chr1.3:42565853-42565872 | None:intergenic | 60.0% | |
| CAGCTACCAGCAGGAGTGAG+CGG | - | chr1.3:42565860-42565879 | None:intergenic | 60.0% | |
| GAGCCTCAGTGAGCTAGTGG+TGG | - | chr1.3:42566836-42566855 | None:intergenic | 60.0% | |
| GAGGCCACAAACTCCATCGC+CGG | + | chr1.3:42569215-42569234 | MS.gene41081:CDS | 60.0% | |
| GATGGTGCTTCCGCAAGTCC+CGG | - | chr1.3:42569237-42569256 | None:intergenic | 60.0% | |
| GCAAGAGGTAAGCTTGCGGG+GGG | - | chr1.3:42568615-42568634 | None:intergenic | 60.0% | |
| GTCGGAAGGTCCAGCGTTAC+CGG | - | chr1.3:42564289-42564308 | None:intergenic | 60.0% | |
| TGACACGGTCACGTCGACAC+CGG | - | chr1.3:42565127-42565146 | None:intergenic | 60.0% | |
| TGCCGACCGGAGCACAGATT+CGG | + | chr1.3:42564322-42564341 | MS.gene41081:CDS | 60.0% | |
| AACGCTGGACCTTCCGACCG+TGG | + | chr1.3:42564291-42564310 | MS.gene41081:CDS | 65.0% | |
| CCAGCAGGAGTGAGCGGAGA+AGG | - | chr1.3:42565854-42565873 | None:intergenic | 65.0% | |
| CCTTCTCCGCTCACTCCTGC+TGG | + | chr1.3:42565851-42565870 | MS.gene41081:CDS | 65.0% | |
| GGCCGAATCTGTGCTCCGGT+CGG | - | chr1.3:42564327-42564346 | None:intergenic | 65.0% | |
| GTGGAGGGGGAACCCTCACA+AGG | - | chr1.3:42568822-42568841 | None:intergenic | 65.0% | |
| ATCGGCGAGCCACGGTCGGA+AGG | - | chr1.3:42564303-42564322 | None:intergenic | 70.0% | |
| CGGCGGCCGAATCTGTGCTC+CGG | - | chr1.3:42564331-42564350 | None:intergenic | 70.0% | |
| GCTTCCGCAAGTCCCGGCGA+TGG | - | chr1.3:42569231-42569250 | None:intergenic | 70.0% | |
| CGTGGCTCGCCGATGCCGAC+CGG | + | chr1.3:42564309-42564328 | MS.gene41081:CDS | 75.0% | |
| !! | CGGCATCGGCGAGCCACGGT+CGG | - | chr1.3:42564307-42564326 | None:intergenic | 75.0% |
| !! | CGGTCGGCATCGGCGAGCCA+CGG | - | chr1.3:42564311-42564330 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.3 | gene | 42564282 | 42569284 | 42564282 | ID=MS.gene41081 |
| chr1.3 | mRNA | 42564282 | 42569284 | 42564282 | ID=MS.gene41081.t1;Parent=MS.gene41081 |
| chr1.3 | exon | 42564282 | 42564482 | 42564282 | ID=MS.gene41081.t1.exon1;Parent=MS.gene41081.t1 |
| chr1.3 | CDS | 42564282 | 42564482 | 42564282 | ID=cds.MS.gene41081.t1;Parent=MS.gene41081.t1 |
| chr1.3 | exon | 42565551 | 42565740 | 42565551 | ID=MS.gene41081.t1.exon2;Parent=MS.gene41081.t1 |
| chr1.3 | CDS | 42565551 | 42565740 | 42565551 | ID=cds.MS.gene41081.t1;Parent=MS.gene41081.t1 |
| chr1.3 | exon | 42565846 | 42565899 | 42565846 | ID=MS.gene41081.t1.exon3;Parent=MS.gene41081.t1 |
| chr1.3 | CDS | 42565846 | 42565899 | 42565846 | ID=cds.MS.gene41081.t1;Parent=MS.gene41081.t1 |
| chr1.3 | exon | 42566015 | 42566100 | 42566015 | ID=MS.gene41081.t1.exon4;Parent=MS.gene41081.t1 |
| chr1.3 | CDS | 42566015 | 42566100 | 42566015 | ID=cds.MS.gene41081.t1;Parent=MS.gene41081.t1 |
| chr1.3 | exon | 42566191 | 42566279 | 42566191 | ID=MS.gene41081.t1.exon5;Parent=MS.gene41081.t1 |
| chr1.3 | CDS | 42566191 | 42566279 | 42566191 | ID=cds.MS.gene41081.t1;Parent=MS.gene41081.t1 |
| chr1.3 | exon | 42566397 | 42566451 | 42566397 | ID=MS.gene41081.t1.exon6;Parent=MS.gene41081.t1 |
| chr1.3 | CDS | 42566397 | 42566451 | 42566397 | ID=cds.MS.gene41081.t1;Parent=MS.gene41081.t1 |
| chr1.3 | exon | 42567705 | 42567757 | 42567705 | ID=MS.gene41081.t1.exon7;Parent=MS.gene41081.t1 |
| chr1.3 | CDS | 42567705 | 42567757 | 42567705 | ID=cds.MS.gene41081.t1;Parent=MS.gene41081.t1 |
| chr1.3 | exon | 42567841 | 42567891 | 42567841 | ID=MS.gene41081.t1.exon8;Parent=MS.gene41081.t1 |
| chr1.3 | CDS | 42567841 | 42567891 | 42567841 | ID=cds.MS.gene41081.t1;Parent=MS.gene41081.t1 |
| chr1.3 | exon | 42568002 | 42568050 | 42568002 | ID=MS.gene41081.t1.exon9;Parent=MS.gene41081.t1 |
| chr1.3 | CDS | 42568002 | 42568050 | 42568002 | ID=cds.MS.gene41081.t1;Parent=MS.gene41081.t1 |
| chr1.3 | exon | 42568179 | 42568244 | 42568179 | ID=MS.gene41081.t1.exon10;Parent=MS.gene41081.t1 |
| chr1.3 | CDS | 42568179 | 42568244 | 42568179 | ID=cds.MS.gene41081.t1;Parent=MS.gene41081.t1 |
| chr1.3 | exon | 42568341 | 42568417 | 42568341 | ID=MS.gene41081.t1.exon11;Parent=MS.gene41081.t1 |
| chr1.3 | CDS | 42568341 | 42568417 | 42568341 | ID=cds.MS.gene41081.t1;Parent=MS.gene41081.t1 |
| chr1.3 | exon | 42568572 | 42568803 | 42568572 | ID=MS.gene41081.t1.exon12;Parent=MS.gene41081.t1 |
| chr1.3 | CDS | 42568572 | 42568803 | 42568572 | ID=cds.MS.gene41081.t1;Parent=MS.gene41081.t1 |
| chr1.3 | exon | 42568985 | 42569051 | 42568985 | ID=MS.gene41081.t1.exon13;Parent=MS.gene41081.t1 |
| chr1.3 | CDS | 42568985 | 42569051 | 42568985 | ID=cds.MS.gene41081.t1;Parent=MS.gene41081.t1 |
| chr1.3 | exon | 42569160 | 42569284 | 42569160 | ID=MS.gene41081.t1.exon14;Parent=MS.gene41081.t1 |
| chr1.3 | CDS | 42569160 | 42569284 | 42569160 | ID=cds.MS.gene41081.t1;Parent=MS.gene41081.t1 |
| Gene Sequence |
| Protein sequence |
