AlfalfaGEDB | MS.gene062621

M. sativa cultivar XinJiangDaYe / MS.gene062621

KEGG: -
GO: GO:0003674 GO:0005488 GO:0008289
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene062621.t1	XP_024641995.1	92.7	799	53	4	1	796	7	803	0.00E+00	1239.2

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene062621.t1	Q8IWB9	22.5	316	212	5	348	644	825	1126	9.8e-19	97.1

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene062621.t1	A0A396HHW7	92.7	799	53	4	1	796	7	803	0.0e+00	1239.2

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049396	MS.gene062621	0.867207	1.62E-65	-1.69E-46
MS.gene050868	MS.gene062621	0.801598	8.35E-49	-1.69E-46
MS.gene050871	MS.gene062621	0.805736	1.16E-49	-1.69E-46
MS.gene051734	MS.gene062621	0.82206	2.90E-53	-1.69E-46
MS.gene051838	MS.gene062621	0.817718	2.85E-52	-1.69E-46
MS.gene052414	MS.gene062621	0.834812	2.41E-56	-1.69E-46
MS.gene053449	MS.gene062621	0.810097	1.37E-50	-1.69E-46
MS.gene053505	MS.gene062621	0.809097	2.24E-50	-1.69E-46
MS.gene053574	MS.gene062621	0.806989	6.29E-50	-1.69E-46
MS.gene053626	MS.gene062621	0.835884	1.29E-56	-1.69E-46

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene062621.t1	MTR_6g066300	93.681	728	41	4	72	796	23	748	0.0	1344
MS.gene062621.t1	MTR_1g077470	57.143	812	284	15	5	791	8	780	0.0	840

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene062621.t1	AT1G17820	43.510	832	371	21	4	791	8	784	0.0	616
MS.gene062621.t1	AT1G73200	44.596	805	375	23	6	791	9	761	0.0	610

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Find 160 sgRNAs with CRISPR-Local

Find 379 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACGCAGTGTCCCTCTTA+GGG	0.459266	6.4:-47062460	None:intergenic
AAAAGAAAACTGAGAAACTT+CGG	0.476046	6.4:+47060019	MS.gene062621:CDS
AAAGAAAACTGAGAAACTTC+GGG	0.426927	6.4:+47060020	MS.gene062621:CDS
AAAGCTAGTGCAAAGACCTC+AGG	0.569315	6.4:+47063308	MS.gene062621:CDS
AAATCTTGAATAATATCTGA+TGG	0.502351	6.4:-47061263	None:intergenic
AACAAATGGACTTCATTCTC+AGG	0.522529	6.4:+47059985	MS.gene062621:CDS
AACAGTAGGATTAAGTGTTG+AGG	0.624183	6.4:+47059867	MS.gene062621:CDS
AACCCTCATCCCAATGATAC+AGG	0.410476	6.4:-47061093	None:intergenic
AACCTGAATTCTCTCTTGCA+CGG	0.542748	6.4:-47060295	None:intergenic
AACTAGTACTACGATCAAGT+TGG	0.571521	6.4:-47057780	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAGAAAACTGAGAAACTTC+GGG	+	chr6.4:47060020-47060039	MS.gene062621:CDS	30.0%
AACAGACAGAAAAATGACTT+TGG	-	chr6.4:47060170-47060189	None:intergenic	30.0%
ACAAGAAACTAGTGATTTGA+AGG	+	chr6.4:47063502-47063521	MS.gene062621:CDS	30.0%
AGCACTTATATCTAGATATC+AGG	-	chr6.4:47061870-47061889	None:intergenic	30.0%
AGCCGAAAAAAATTGGAAAA+AGG	+	chr6.4:47063660-47063679	MS.gene062621:CDS	30.0%
AGTCAATAGTTATGCACAAA+GGG	+	chr6.4:47062977-47062996	MS.gene062621:intron	30.0%
ATAAAACAGCGTAGTCAAAT+AGG	-	chr6.4:47060927-47060946	None:intergenic	30.0%
ATAGATTCTACTACACAATG+AGG	-	chr6.4:47057914-47057933	None:intergenic	30.0%
ATATTACCATACTTCCTAAC+AGG	-	chr6.4:47058919-47058938	None:intergenic	30.0%
ATCTAAAAACTCAAGCTTTC+TGG	+	chr6.4:47061520-47061539	MS.gene062621:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr6.4	gene	47057637	47063766	47057637	ID=MS.gene062621
chr6.4	mRNA	47057637	47063766	47057637	ID=MS.gene062621.t1;Parent=MS.gene062621
chr6.4	exon	47057637	47057843	47057637	ID=MS.gene062621.t1.exon1;Parent=MS.gene062621.t1
chr6.4	CDS	47057637	47057843	47057637	ID=cds.MS.gene062621.t1;Parent=MS.gene062621.t1
chr6.4	exon	47058817	47059049	47058817	ID=MS.gene062621.t1.exon2;Parent=MS.gene062621.t1
chr6.4	CDS	47058817	47059049	47058817	ID=cds.MS.gene062621.t1;Parent=MS.gene062621.t1
chr6.4	exon	47059636	47060314	47059636	ID=MS.gene062621.t1.exon3;Parent=MS.gene062621.t1
chr6.4	CDS	47059636	47060314	47059636	ID=cds.MS.gene062621.t1;Parent=MS.gene062621.t1
chr6.4	exon	47061014	47061368	47061014	ID=MS.gene062621.t1.exon4;Parent=MS.gene062621.t1
chr6.4	CDS	47061014	47061368	47061014	ID=cds.MS.gene062621.t1;Parent=MS.gene062621.t1
chr6.4	exon	47061934	47062028	47061934	ID=MS.gene062621.t1.exon5;Parent=MS.gene062621.t1
chr6.4	CDS	47061934	47062028	47061934	ID=cds.MS.gene062621.t1;Parent=MS.gene062621.t1
chr6.4	exon	47062429	47062623	47062429	ID=MS.gene062621.t1.exon6;Parent=MS.gene062621.t1
chr6.4	CDS	47062429	47062623	47062429	ID=cds.MS.gene062621.t1;Parent=MS.gene062621.t1
chr6.4	exon	47063125	47063766	47063125	ID=MS.gene062621.t1.exon7;Parent=MS.gene062621.t1
chr6.4	CDS	47063125	47063766	47063125	ID=cds.MS.gene062621.t1;Parent=MS.gene062621.t1

Gene Sequence

>MS.gene062621

ATGGTTTCTTTGTTGATCCTATTTGGTTTTTTTCTTGGTGTTATTGTTGTTGTTGCTGCGGAATTTCTTGGTTTCTTGTGGATCCTTAAACGACTTCGTAGGAAAATTAACAGTGATAAAGCAAAATTTTCATCAATTGCAAACCAACTTGATCGTAGTACTAGTTGCAGTTCTCAAATTGATTCTCATCAATCTTTCAAAAAAGAGGTAACTTTGATTCTTCCACAAAAATCCTTTTTTTTTTTGAATTTTTGTATTTTTTTGTGAATGAAACCCTCATTGTGTAGTAGAATCTATAAGATACCATTAGTATTTATTAATTTTTAATTATTTTTACTGTTTTATTATTTGTTTATTTTTGTGTGTTTCAGATTGTTCATGTCATTGTGTAGTAGAAATGTAGAATCTACTATGATAATATAAGTAGATGTTAATTTATTAATTTTTTTTTACTATTTTATAATTTGGTTATTTCTGTGTATTTCAGATGTTTCATGTCATTGTGTAGTAGAATCCACTAAGATAACATAAGTATATATTAGTATTTTATTTTGTTTTTACTGTTTTATTATTATTATTATTTTTTTTTTGAAAGATGTTTTATTATTTTTTTTATTTTGTGTGTTTCAGATTGTTCAATATAATTGTGTAATAGAATCCACTTAATGACATAAGTATATATTAAATTTTGTAATTATTTTTTTTTTTTTACTATTTTATTATTTGTTTATTTCTATGTATAGTAGAAAATAGGGTAGAAAATAGGCTTAGATGGTAGAAAAGATTGTAGTAAGGAGAGTAGATCAGATGAAGTATAGTCGGATCACTAGAGGTAGAGGAAGTCCTAGAATAACTATAAGAGAAACTATTAAGAAATATTTAGGGAGCAATGAGTTGGATCGAAATATGGTTTATGATAGAACATTATGACATAATTTGATCCATGTAGCCGACTCCACTTAGTGGGATAAGGGTTGGTTGTTGTTGTATTATTTGTTTATTTTTGTGTGTTTCAGATTGTTCATGTAACTGTGTAGTAAAATCCACTAAGATAACATAAGTAGATATTAATTTCTTAAGTTTTTTTTTTGTTGCTATTTTATTATTTGTTTATTTTTGTGTGTTTCAGATTGTTCATGTCATTGATATTGGGTTTGGGTTTGGGGTTGGGTTTCTTCAGGGTGTAGTTTGGGTTTTAGAACCAGAGAAGGTTTCAAAGTACTTTGTGGAAAGATCATCAAAAGAGGTGAAAAGGAAAAAAGAGGTTTTTGAGGTTTCTCCTGTTAGGAAGTATGGTAATATCAAAGGTCAGTCACTTGTTCTCACTGAGCCTGATGGATCGCATACAACCATTCAGCTCAAAGGATGCATCGTTGAAGCTGTTTCTGCCACAAGCGCTCCTACAAAAAAATGGTAATGGTGTTTGTGGTTTTTGTTTTCATTTGCATTATGTGACTTAAATTTGTGATTTCTGGACTTCGTTATATTTTTCAAGTTGATTTGTTGATTTTAATTTGTGATATTTTAAGGTTGATTTCTTTGGCGAATTGCTAGAATATTAGTTTTAGTTATTTGGTTGAGTTCAATATATGTCGCTAATGTCTAGTTTATCTTGATAATTCTCGACAATTCTCAAGTTTATGTCAAATTAACCAAGTAATTGGGCTCAAGTGGTTAATGAGCTTCGCCGAAAGACGAATTGTTCAGGTGAAACTGAGTTCAATTCCTGGGTGGAACAATCACATCGTTTTGATATCTTAAAGAAGTCTTGTAAACGGGTTTCTTTTGAACTTTCTCTGATTTTGATTTAGAAATGATAGATCTCATTTCCTTTATGACGTGCTTGCATCCTAAAGAAAGAGATAACATGTTATAGCTTTGGCTTATAAGTGTCATACTTAATATGATTATGGATAGATATATTTTATTATTCTCATAATCATTAACCGAGGAAACTATGTACTACACATTCTTATTTGATTTGCAATGAATTTTATAGGGCAAAAAAGTACCCGATCAAAGTGGAAAACAGGACCTCTGTGATATACCATGGAAGCAAAACTCTTTATGTATATCTTGAGACTTCGTCTGAGAAAGAGGCATGGTGTAAGGCCCTCCGTTTGGCCTCATGTGATGAAAGAGAAAAACTCCAATGGTATTCGCAGTTGCAAGAAGAGTTTCATAGTTATCTGACATCATTAAATACTGAATATCATTCTTTTATGAAACCAACAGTAGGATTAAGTGTTGAGGCAATAGAAAGGGCTACTAAGACGGATGGATCTTCCTCAAAGGTCCGTCAGTTTTTGAAAAAAATTACGAGAAGATCTTCCCGAGTTGGCTTGGATAACAAATGGACTTCATTCTCAGGCCGCGAAGACAAAAAGAAAACTGAGAAACTTCGGGCTTGCCAAGATGCAGTTTTAGCCACTAGCTATATGAAAAATGGTGCAGCAACTAGTTTTCCGAGAAGTTCCATATCAGACGATGCTCCATCACTATCATCATCATCCCTGTCTCGTTCAGGAAGCCAAAGTCATTTTTCTGTCTGTTCTGACACCGATGAAAAGTTTGGTATTGATGAGGGAACATTATGTTGGAATTTGTTGATTTCCCGACTCTTTTTTGATATCAAAGGCAATGAGCAAGTGAAGAAATCCGTGCAAGAGAGAATTCAGGTTTAAGATTTTCCTATATGAATTTATGCAGTTGATTCTGAGTCTTTTTAATCATCTTTAAATTAGATGAGAATTTCTGTCTAACAATCAATGTTTAGAACTTTGTCTTCTCTTTGTTAGTTTGTTACTTTGTTAAATTGATATTAGTACTTAGGCATTCATTTTGGAACCCTAGATTTAGAATATTATATCCTTTTAGCAACAGGTTCAAGCTGCATAATTATGAACAGTTATTATTTAGCTTAACACATTAGGTGTATATAAGTTATATAATTTTCAGGTAATGATATAATCTTCTACATTTGAATTAATGGAAGGAAGGTACTATTTTTCAAAACATTAGCAATTTAACTACTGGCTTGCCCCATTTTGGTCCAGCAAACTCCATTCCTTTAAGATTGTTGAGAGAATGTTCATAATTTTTTATTTCAGCGTTGTCAATTGCGGATCACGGAAAATAACGATTTGTTCAAATTGGCTATGCTACAGGCTACAGTAGTAATATAGCTACTATATGACAAAACTTTGCACTAAACAGCATCGTATAGTGGAACAATAGCGATTTGTTCAAATTTTGCTATGCTGTTGCATTATATAGCTGCTATAGACCCTATTTGACTACGCTGTTTTATTTACGGAGAAATATGTTGAAAACTTTATTTTGTTATGGTAAGTGATGGTCTTCTCTATTTTTTACAGAGGACATTGTCCAACATGAGAACTCCCGCATATGTCGGTGATGTCGTCTGTACAGATATCAACATGGGGAATGTTCCACCCTGTATCATTGGGATGAGGGTTCTTCCGATGGAAATGAGCGAGGTATGTGCCTTGGAGGTTGACATCGAATATTCTGGAAGTGCAATATTGGAGATTGAAACAAGGCTAGAAGTTGGTGAGCTAGAGAAAGAGGGCTCAAATCCCGTGTCGAACAATGTTGGGTCTGTCCCATCAGATATTATTCAAGATTTCGAGTATTTAGATAAGCAATTAGGTCTTGCAGAAGGAATGAATGATTCGCAAGAGCCTAAAGAAGATGGTGACTGGAACAATGGTTAGTACTTAAGTGCTATTATATTCTGCTATTTATGTATTTTCTCTAGTAGTTGTTAACTTTGTACTCAATTTTTCTCCCGTTAAAATGTAGGTGAGGAAAATCATAGTTTTAGTTCTGTTCATCGTATAAACGTAATTTTTGAGCCTTCATCTAAAAACTCAAGCTTTCTGGATGGTGTATCTTTCACAATGTATTAGTGCTCATGCATGGAAACCATATTTGTGGAATAAAACAATTCACATGTCTTGGTTTTTAAAAGAGAGGCAACAGTTTCAAACTGTTATACTGTAAATTTTTCTAGCACTTTTGGTGATAGCAGGGGCCTTCCAAAATTCCTTCTCGAACCACCTATAGCATCATATTATATTTTAGTTTTTTTTTTTTTTTACATTTGTCACACTGGAAATGAAATCATGTGGTTTTCAACAGTTTTTTTGGCCTTGTTTTCCTATAGATTATAAATTTCAAAAAATATTTCTCGTGTGGACAAGTGGTCCTGATATCTAGATATAAGTGCTCTCATAAAGCATTCAGATGGATGATGTCAATTTTCCCTTTGCAGATGTGTCAAAGAAGTTAAGAAGCAATGCACCTTCCTCGACTCCTGGATCAAGATGGAAATCTATGTTAAATTCTGTTGCCAAGCATGTTTCACAGGTACCATCTCTTTATAACTCCCTACTTTTTTCCCATTGGTTGCTTTTTTCCCCGTTCTTTCATTATTAAGAATCTGCTAAATAACTATGTAAAGTGGTTTGTACCTTCGTGAACTCTAAATCATTTGATTGTATAGTCTCAGTTATCATGTCAAAAACCACCCCTTCCCCCCAAAAAATAAATAAATAAACACGAACTTGTAGGTGAAAACATTTGAATGGTTTTTTTTGTGTTACATCATGAACAACTAAAGGTGTGCAATGCATATCTTGTTTTTGAGCACTTTCATGTGGATAGATGCTTTATTATGAAGTTATAAATAGCAGATGTTTTACCATGAAGTTATAAATAGCTAATGTTGTGTTATTCTCAAATTAATGACTTTGTTTATTATCAAAAGGTTCCTATCACTTTGGCAATAAGGGTAGCATCCCTAAGAGGGACACTGCGTTTTTTTATAAAGCCGCCACCCGCCGATCAACTGTGGTATGGTTTCACATTTATGCCTGATATAGACTTCAACTTGGAATCATCTGTTGGAGAACATAAGATAACCAATACGCGCATTGCTTTGTTCCTGATCAACCGGCTCAAGGTACAAATAGTTCCCTTTTTCGTTAAGTTATGAAAGGATATTTGTGAAGTATTACTTTTTCTTGTTCAACTTTGCATGTCCTTGTTTAATCTATGAAAAAGACTAAGACCTTGTTTATTTAGATAAACTACTTATCATGTAAGTGTTTGTATAAGATATTTCTGCAACAAAAAGTAAAATAAAGTCCGACTATTTTTTTATAAGCTATAAGTTGCTTTCATAAGCTACTATCATAGAGAGCTTATGAAAATAAGCTGATAACAGCATATTTACATGTCATAAGTTGTTTCTATAAGTTCTCTAAAACAATCAGTAGATAAGTTCAAATAAACCAATTCAAACAGGCCCTAAGTAGTCAATAGTTATGCACAAAGGGGAATTTCCTTCAGAAATGACTTTAAGAAAAAAAATCTTTGGGGAAATGTGATTGCATGCCTTCGTTTATAGAAATGAACAGAGGATCTCCCACTTGCAAACTTAATTTTTATTTCTCTTCTGCAGGCAGCAATTCGGGACACTTTAGTGCTCCCAAATAGTGAAAGCGTAGGCATTCGATGGATGCTAGCGGAAAAAGATGATTGGGTTCCTCGGAATGTTGCACCTTTCATATGGATCAACCAAGAATCTGGGAATGAAACTTCAAATCCTCCAATTGATAGCAATAACCAAACTTCTGGTGGAGTGAAAGCTAGTGCAAAGACCTCAGGTGATAGTCCAGAACCGAAACAAGAAAAACTGAAGAGTAGCGAATCGAGACAAGATCCAGCCAGGAAATCAGATTCTCAAGCATTTCCGTCAAGTTTCTCTTTTTCAGCAGCAATAAGGAATAGTAAAAGCTTTGACGAACTGTCAAAACCTTTATTAGAAAGTGGCCAACAACAAGAAACTAGTGATTTGAAGGATCTTAGTATGCCTTCATTAGAAAGTGACCACGAAGCTAGCGAAGAGAAGACGGATGATGTTTCTGTTAGCAGTTCGCCTTCGAATAGTGCAGTGATGGATAGGTCAATCAGTTCGGCTCAACAGGATGATTCAAAGCCGAAAAAAATTGGAAAAAGGGAAAGGTTTTTTGATTTGCGAAAGAAAGTGAACGAGAAAATGAGCGAGAAAATAGAAGAAGCCAAAAAAAATTGGAAGAAGTGA

Protein sequence

>MS.gene062621.t1

MVSLLILFGFFLGVIVVVAAEFLGFLWILKRLRRKINSDKAKFSSIANQLDRSTSCSSQIDSHQSFKKEGVVWVLEPEKVSKYFVERSSKEVKRKKEVFEVSPVRKYGNIKGQSLVLTEPDGSHTTIQLKGCIVEAVSATSAPTKKWAKKYPIKVENRTSVIYHGSKTLYVYLETSSEKEAWCKALRLASCDEREKLQWYSQLQEEFHSYLTSLNTEYHSFMKPTVGLSVEAIERATKTDGSSSKVRQFLKKITRRSSRVGLDNKWTSFSGREDKKKTEKLRACQDAVLATSYMKNGAATSFPRSSISDDAPSLSSSSLSRSGSQSHFSVCSDTDEKFGIDEGTLCWNLLISRLFFDIKGNEQVKKSVQERIQRTLSNMRTPAYVGDVVCTDINMGNVPPCIIGMRVLPMEMSEVCALEVDIEYSGSAILEIETRLEVGELEKEGSNPVSNNVGSVPSDIIQDFEYLDKQLGLAEGMNDSQEPKEDGDWNNDVSKKLRSNAPSSTPGSRWKSMLNSVAKHVSQVPITLAIRVASLRGTLRFFIKPPPADQLWYGFTFMPDIDFNLESSVGEHKITNTRIALFLINRLKAAIRDTLVLPNSESVGIRWMLAEKDDWVPRNVAPFIWINQESGNETSNPPIDSNNQTSGGVKASAKTSGDSPEPKQEKLKSSESRQDPARKSDSQAFPSSFSFSAAIRNSKSFDELSKPLLESGQQQETSDLKDLSMPSLESDHEASEEKTDDVSVSSSPSNSAVMDRSISSAQQDDSKPKKIGKRERFFDLRKKVNEKMSEKIEEAKKNWKK