Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene062704.t1 | XP_013466066.1 | 98.1 | 428 | 8 | 0 | 1 | 428 | 1 | 428 | 3.30E-238 | 833.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene062704.t1 | Q9LN62 | 70.3 | 434 | 117 | 3 | 1 | 428 | 1 | 428 | 1.6e-172 | 607.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene062704.t1 | A0A072VPP4 | 98.1 | 428 | 8 | 0 | 1 | 428 | 1 | 428 | 2.3e-238 | 833.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050170 | MS.gene062704 | -0.817337 | 3.47E-52 | -1.69E-46 |
| MS.gene050868 | MS.gene062704 | -0.809843 | 1.55E-50 | -1.69E-46 |
| MS.gene050871 | MS.gene062704 | -0.803672 | 3.12E-49 | -1.69E-46 |
| MS.gene051317 | MS.gene062704 | -0.800733 | 1.26E-48 | -1.69E-46 |
| MS.gene052494 | MS.gene062704 | 0.800792 | 1.22E-48 | -1.69E-46 |
| MS.gene052606 | MS.gene062704 | 0.802799 | 4.73E-49 | -1.69E-46 |
| MS.gene05470 | MS.gene062704 | -0.800129 | 1.67E-48 | -1.69E-46 |
| MS.gene055251 | MS.gene062704 | 0.806112 | 9.64E-50 | -1.69E-46 |
| MS.gene055751 | MS.gene062704 | -0.804604 | 1.99E-49 | -1.69E-46 |
| MS.gene05589 | MS.gene062704 | -0.820973 | 5.17E-53 | -1.69E-46 |
| MS.gene056504 | MS.gene062704 | -0.805847 | 1.10E-49 | -1.69E-46 |
| MS.gene056694 | MS.gene062704 | 0.804698 | 1.91E-49 | -1.69E-46 |
| MS.gene057768 | MS.gene062704 | 0.847931 | 8.46E-60 | -1.69E-46 |
| MS.gene058111 | MS.gene062704 | 0.846206 | 2.51E-59 | -1.69E-46 |
| MS.gene058171 | MS.gene062704 | 0.823981 | 1.03E-53 | -1.69E-46 |
| MS.gene058173 | MS.gene062704 | 0.82971 | 4.42E-55 | -1.69E-46 |
| MS.gene058175 | MS.gene062704 | 0.835494 | 1.62E-56 | -1.69E-46 |
| MS.gene058334 | MS.gene062704 | 0.81564 | 8.33E-52 | -1.69E-46 |
| MS.gene06042 | MS.gene062704 | 0.803947 | 2.73E-49 | -1.69E-46 |
| MS.gene060595 | MS.gene062704 | 0.814228 | 1.71E-51 | -1.69E-46 |
| MS.gene060762 | MS.gene062704 | -0.805634 | 1.21E-49 | -1.69E-46 |
| MS.gene060823 | MS.gene062704 | 0.816071 | 6.68E-52 | -1.69E-46 |
| MS.gene060929 | MS.gene062704 | 0.816124 | 6.50E-52 | -1.69E-46 |
| MS.gene060982 | MS.gene062704 | -0.811443 | 6.98E-51 | -1.69E-46 |
| MS.gene061044 | MS.gene062704 | 0.855607 | 5.63E-62 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene062704.t1 | MTR_1g022025 | 98.131 | 428 | 8 | 0 | 1 | 428 | 1 | 428 | 0.0 | 874 |
| MS.gene062704.t1 | MTR_4g069260 | 73.182 | 440 | 102 | 3 | 1 | 428 | 1 | 436 | 0.0 | 676 |
| MS.gene062704.t1 | MTR_4g069300 | 69.767 | 430 | 123 | 2 | 5 | 427 | 7 | 436 | 0.0 | 618 |
| MS.gene062704.t1 | MTR_4g069430 | 68.545 | 426 | 119 | 5 | 5 | 427 | 7 | 420 | 0.0 | 583 |
| MS.gene062704.t1 | MTR_4g069420 | 65.268 | 429 | 135 | 2 | 5 | 427 | 7 | 427 | 0.0 | 577 |
| MS.gene062704.t1 | MTR_4g069350 | 64.651 | 430 | 138 | 3 | 5 | 427 | 7 | 429 | 0.0 | 568 |
| MS.gene062704.t1 | MTR_4g069390 | 72.832 | 346 | 89 | 1 | 82 | 427 | 12 | 352 | 0.0 | 538 |
| MS.gene062704.t1 | MTR_5g025590 | 27.805 | 205 | 131 | 6 | 145 | 344 | 103 | 295 | 1.19e-13 | 73.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene062704.t1 | AT1G19360 | 70.276 | 434 | 117 | 3 | 1 | 428 | 1 | 428 | 0.0 | 641 |
| MS.gene062704.t1 | AT1G19360 | 70.276 | 434 | 117 | 3 | 1 | 428 | 1 | 428 | 0.0 | 641 |
| MS.gene062704.t1 | AT1G75110 | 68.736 | 435 | 122 | 4 | 1 | 428 | 1 | 428 | 0.0 | 626 |
| MS.gene062704.t1 | AT1G75120 | 61.631 | 417 | 141 | 2 | 11 | 427 | 5 | 402 | 0.0 | 532 |
| MS.gene062704.t1 | AT2G35610 | 25.120 | 418 | 238 | 17 | 3 | 398 | 8 | 372 | 1.04e-12 | 70.5 |
Find 92 sgRNAs with CRISPR-Local
Find 141 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGTCTTTGATGAACCTAAAA+TGG | 0.118559 | 1.4:+2377979 | MS.gene062704:CDS |
| AGTTGGCATATCTAATTATT+TGG | 0.214194 | 1.4:+2377664 | MS.gene062704:CDS |
| TATGCCAACTTTCTTGATAT+TGG | 0.231969 | 1.4:-2377651 | None:intergenic |
| CCCCTTTGATTATATTTATA+GGG | 0.245145 | 1.4:+2377895 | MS.gene062704:CDS |
| TTCATCCTTGCAAGTTTATC+AGG | 0.257490 | 1.4:-2378316 | None:intergenic |
| ACCCCTTTGATTATATTTAT+AGG | 0.264534 | 1.4:+2377894 | MS.gene062704:CDS |
| CATAGCAATCATACAGCTTA+TGG | 0.265461 | 1.4:+2377947 | MS.gene062704:CDS |
| TAAAGAGGTCGTTGTTGTTC+TGG | 0.289152 | 1.4:+2377589 | MS.gene062704:CDS |
| ATGCTCATACCATGAGAATA+TGG | 0.294158 | 1.4:+2378014 | MS.gene062704:CDS |
| GAACCTTACTGTTCATAAAA+AGG | 0.300928 | 1.4:-2378222 | None:intergenic |
| AAACACAAGGCTGGTCCTTT+TGG | 0.309663 | 1.4:+2377473 | MS.gene062704:CDS |
| TTCAACGCATTAACTTGTTC+TGG | 0.347234 | 1.4:-2377320 | None:intergenic |
| AGCTCAATTGAAGGAATTGT+TGG | 0.375607 | 1.4:-2378067 | None:intergenic |
| GGTGGGAATCATGCTGTCTC+TGG | 0.396405 | 1.4:+2377788 | MS.gene062704:CDS |
| CCTTCACATCCTGGTTATGA+TGG | 0.408046 | 1.4:+2378166 | MS.gene062704:CDS |
| TCCGAGATGCGGTGATTGAA+TGG | 0.416396 | 1.4:-2376024 | None:intergenic |
| CCCTAGATTGGCAAAACTCT+TGG | 0.417448 | 1.4:+2377550 | MS.gene062704:CDS |
| TGATGAACCTAAAATGGGTT+GGG | 0.421735 | 1.4:+2377985 | MS.gene062704:CDS |
| AAGAAGAACGCCGATGAAAA+CGG | 0.426281 | 1.4:-2376056 | None:intergenic |
| TTCTGTTATTCCCGATGAAT+CGG | 0.434960 | 1.4:+2377523 | MS.gene062704:CDS |
| TAATGTGTTGGAGATGTTAC+AGG | 0.437641 | 1.4:+2377619 | MS.gene062704:CDS |
| TCCCTATAAATATAATCAAA+GGG | 0.442068 | 1.4:-2377896 | None:intergenic |
| ACCAACCTTGTGACTGAGAA+TGG | 0.449721 | 1.4:-2376140 | None:intergenic |
| GAATTCTGAGCTGAAGAAGC+AGG | 0.473704 | 1.4:+2377370 | MS.gene062704:CDS |
| TCTAATGGAGAAGCTGCGTT+TGG | 0.475422 | 1.4:+2377400 | MS.gene062704:CDS |
| ATCCCTATAAATATAATCAA+AGG | 0.485270 | 1.4:-2377897 | None:intergenic |
| GAAGCAGGTGAAAGGTCTAA+TGG | 0.486719 | 1.4:+2377385 | MS.gene062704:CDS |
| TGAATCGGTGAACCCTAGAT+TGG | 0.487843 | 1.4:+2377538 | MS.gene062704:CDS |
| CGATCTAAAAGCTCAATTGA+AGG | 0.489088 | 1.4:-2378076 | None:intergenic |
| ATTGAATCAACACCTTGATC+CGG | 0.489958 | 1.4:-2377755 | None:intergenic |
| TAGTTGAGTTCTATGTCAAC+GGG | 0.490164 | 1.4:+2378344 | MS.gene062704:CDS |
| GGAAATTGCTATTTATAAAG+AGG | 0.490420 | 1.4:+2377574 | MS.gene062704:CDS |
| GTTGATTCAATTGCCAAGTC+GGG | 0.491275 | 1.4:+2377767 | MS.gene062704:CDS |
| ACGGAACAGTTTGTTGTGCT+TGG | 0.491386 | 1.4:+2377446 | MS.gene062704:CDS |
| AATGGAGAAGCTGCGTTTGG+CGG | 0.496977 | 1.4:+2377403 | MS.gene062704:CDS |
| TTGATGAACCTAAAATGGGT+TGG | 0.498626 | 1.4:+2377984 | MS.gene062704:CDS |
| TGCTCATACCATGAGAATAT+GGG | 0.499575 | 1.4:+2378015 | MS.gene062704:CDS |
| TCCTACTAATCAGAACCATC+GGG | 0.500121 | 1.4:-2378391 | None:intergenic |
| TCTAGGGTTCACCGATTCAT+CGG | 0.501111 | 1.4:-2377534 | None:intergenic |
| CTAGGGTTCACCGATTCATC+GGG | 0.503259 | 1.4:-2377533 | None:intergenic |
| AGAATATGGGTATATAACTC+TGG | 0.505845 | 1.4:+2378028 | MS.gene062704:CDS |
| TTGAGAGAGTTTCTGCAACT+AGG | 0.508202 | 1.4:+2377827 | MS.gene062704:CDS |
| TTCACCAATATCAAGAAAGT+TGG | 0.508424 | 1.4:+2377647 | MS.gene062704:CDS |
| GGCTTTCTAAAGAGAAAGCA+TGG | 0.511884 | 1.4:+2378110 | MS.gene062704:CDS |
| AGGTTACAGCGTTCTCCTCT+CGG | 0.515400 | 1.4:+2377847 | MS.gene062704:CDS |
| GTCTTTGATGAACCTAAAAT+GGG | 0.519326 | 1.4:+2377980 | MS.gene062704:CDS |
| ATCCTACTAATCAGAACCAT+CGG | 0.522896 | 1.4:-2378392 | None:intergenic |
| TATAGAAGAGACCCGGATCA+AGG | 0.525636 | 1.4:+2377743 | MS.gene062704:CDS |
| AGCATGATTCCCACCCGACT+TGG | 0.527468 | 1.4:-2377780 | None:intergenic |
| GCGTTTGGCGGAGCAAGGAA+AGG | 0.528394 | 1.4:+2377415 | MS.gene062704:CDS |
| TAGATTGGCAAAACTCTTGG+CGG | 0.530183 | 1.4:+2377553 | MS.gene062704:CDS |
| TCCGGGTCTCTTCTATAGAC+AGG | 0.531058 | 1.4:-2377737 | None:intergenic |
| GATTCAATTGCCAAGTCGGG+TGG | 0.535736 | 1.4:+2377770 | MS.gene062704:CDS |
| TTGAATCAACACCTTGATCC+GGG | 0.540173 | 1.4:-2377754 | None:intergenic |
| TGTTGATTCAATTGCCAAGT+CGG | 0.547442 | 1.4:+2377766 | MS.gene062704:CDS |
| AAGCTGCGTTTGGCGGAGCA+AGG | 0.554092 | 1.4:+2377410 | MS.gene062704:CDS |
| CCATCATAACCAGGATGTGA+AGG | 0.557644 | 1.4:-2378166 | None:intergenic |
| GTAGTTGAGTTCTATGTCAA+CGG | 0.558544 | 1.4:+2378343 | MS.gene062704:CDS |
| ATTTGATAAACAGCAATGGC+AGG | 0.559173 | 1.4:+2375968 | None:intergenic |
| TCTGGCTAACACTAATGTGT+TGG | 0.561756 | 1.4:+2377607 | MS.gene062704:CDS |
| AGAGCCTTGACAGTGCCAAA+AGG | 0.564867 | 1.4:-2377488 | None:intergenic |
| ACCATTCAATCACCGCATCT+CGG | 0.566295 | 1.4:+2376023 | MS.gene062704:CDS |
| GAGCTGAAGAAGCAGGTGAA+AGG | 0.566632 | 1.4:+2377377 | MS.gene062704:CDS |
| TATTTATAGGGATTCAGATG+TGG | 0.569522 | 1.4:+2377907 | MS.gene062704:CDS |
| TGTTGGAGATGTTACAGGTA+TGG | 0.571269 | 1.4:+2377624 | MS.gene062704:CDS |
| CGTTTGGCGGAGCAAGGAAA+GGG | 0.575655 | 1.4:+2377416 | MS.gene062704:CDS |
| TAGTTAACATGTACAATCAC+GGG | 0.581284 | 1.4:-2378289 | None:intergenic |
| ATAGTTAACATGTACAATCA+CGG | 0.586101 | 1.4:-2378290 | None:intergenic |
| GTTATATACCCATATTCTCA+TGG | 0.587662 | 1.4:-2378023 | None:intergenic |
| GCAAGGAAAGGGTCATGCTA+CGG | 0.593930 | 1.4:+2377427 | MS.gene062704:CDS |
| ATCATCCTGATAAACTTGCA+AGG | 0.604744 | 1.4:+2378311 | MS.gene062704:CDS |
| CATCATAACCAGGATGTGAA+GGG | 0.619342 | 1.4:-2378165 | None:intergenic |
| ATTCAATTGCCAAGTCGGGT+GGG | 0.620463 | 1.4:+2377771 | MS.gene062704:CDS |
| TCCTGTCTATAGAAGAGACC+CGG | 0.625262 | 1.4:+2377736 | MS.gene062704:CDS |
| GATTCATCGGGAATAACAGA+AGG | 0.626071 | 1.4:-2377521 | None:intergenic |
| GCGCTCGACAGTTTCCCCGA+TGG | 0.627821 | 1.4:+2378376 | MS.gene062704:CDS |
| GCATGAAGTCCATCATAACC+AGG | 0.631266 | 1.4:-2378175 | None:intergenic |
| CCCTATAAATATAATCAAAG+GGG | 0.636439 | 1.4:-2377895 | None:intergenic |
| TTTCTCTTTAGAAAGCCGAT+CGG | 0.638101 | 1.4:-2378104 | None:intergenic |
| TCATGCTGCAAAGAGAACAA+TGG | 0.639030 | 1.4:+2378192 | MS.gene062704:CDS |
| GATGTGGAGTCAATGTCAGA+TGG | 0.642589 | 1.4:+2377923 | MS.gene062704:CDS |
| GGCAACGGCGATCCGAGATG+CGG | 0.643444 | 1.4:-2376035 | None:intergenic |
| AACGCCGATGAAAACGGCAA+CGG | 0.643805 | 1.4:-2376050 | None:intergenic |
| CTTGGTGAGAAACACAAGGC+TGG | 0.654456 | 1.4:+2377464 | MS.gene062704:CDS |
| GCTTTCTAAAGAGAAAGCAT+GGG | 0.666613 | 1.4:+2378111 | MS.gene062704:CDS |
| GAGAATGGTCTGAGTTGATG+CGG | 0.680850 | 1.4:-2376125 | None:intergenic |
| AATGGTCTGAGTTGATGCGG+TGG | 0.700511 | 1.4:-2376122 | None:intergenic |
| TCAGACCATTCTCAGTCACA+AGG | 0.710546 | 1.4:+2376135 | MS.gene062704:CDS |
| ACACAATATCGACATCCGAG+AGG | 0.744525 | 1.4:-2377862 | None:intergenic |
| CCTACTAATCAGAACCATCG+GGG | 0.749180 | 1.4:-2378390 | None:intergenic |
| TGTGCTTGGTGAGAAACACA+AGG | 0.756567 | 1.4:+2377460 | MS.gene062704:CDS |
| GTGGAAATGAAGAAACCGTG+TGG | 0.802724 | 1.4:-2376103 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTATAATATTTATATGCTTT+AGG | - | chr1.4:2376865-2376884 | None:intergenic | 10.0% |
| !!! | AATAATGTGGATTATATTAA+TGG | + | chr1.4:2376934-2376953 | MS.gene062704:intron | 15.0% |
| !!! | AATGGATTTTATATACTTTA+GGG | + | chr1.4:2376952-2376971 | MS.gene062704:intron | 15.0% |
| !!! | ATAACTTGTTTATCAAAATA+TGG | + | chr1.4:2376527-2376546 | MS.gene062704:intron | 15.0% |
| !!! | TAATGGATTTTATATACTTT+AGG | + | chr1.4:2376951-2376970 | MS.gene062704:intron | 15.0% |
| !! | ATCCCTATAAATATAATCAA+AGG | - | chr1.4:2377900-2377919 | None:intergenic | 20.0% |
| !! | TCCCTATAAATATAATCAAA+GGG | - | chr1.4:2377899-2377918 | None:intergenic | 20.0% |
| !!! | ACAAATTTTCACATACATTA+GGG | - | chr1.4:2376893-2376912 | None:intergenic | 20.0% |
| ! | AAGTTAGCCATTCAATTTAT+GGG | + | chr1.4:2376634-2376653 | MS.gene062704:intron | 25.0% |
| ! | ACCCCTTTGATTATATTTAT+AGG | + | chr1.4:2377894-2377913 | MS.gene062704:CDS | 25.0% |
| ! | AGTTGGCATATCTAATTATT+TGG | + | chr1.4:2377664-2377683 | MS.gene062704:CDS | 25.0% |
| ! | ATACTTCAGAACTAAATTGA+TGG | - | chr1.4:2376827-2376846 | None:intergenic | 25.0% |
| ! | ATAGTTAACATGTACAATCA+CGG | - | chr1.4:2378293-2378312 | None:intergenic | 25.0% |
| ! | ATGTTATTAAGATGTGGTAA+GGG | - | chr1.4:2377012-2377031 | None:intergenic | 25.0% |
| ! | CCCCTTTGATTATATTTATA+GGG | + | chr1.4:2377895-2377914 | MS.gene062704:CDS | 25.0% |
| ! | CCCTATAAATATAATCAAAG+GGG | - | chr1.4:2377898-2377917 | None:intergenic | 25.0% |
| ! | GGTCTAATATTTACAAAACT+TGG | + | chr1.4:2376548-2376567 | MS.gene062704:intron | 25.0% |
| ! | TAATCCATGTTATTAAGATG+TGG | - | chr1.4:2377018-2377037 | None:intergenic | 25.0% |
| ! | TACTTTACCCATAAATTGAA+TGG | - | chr1.4:2376644-2376663 | None:intergenic | 25.0% |
| ! | TAGCAAATCATATAATGCAT+CGG | + | chr1.4:2376795-2376814 | MS.gene062704:intron | 25.0% |
| !! | CATCTTAATAACATGGATTA+AGG | + | chr1.4:2377018-2377037 | MS.gene062704:intron | 25.0% |
| !! | GACAAATTTTCACATACATT+AGG | - | chr1.4:2376894-2376913 | None:intergenic | 25.0% |
| !!! | GGAAATTGCTATTTATAAAG+AGG | + | chr1.4:2377574-2377593 | MS.gene062704:CDS | 25.0% |
| !!! | TAAGTTTTTTGAGACGATTT+GGG | + | chr1.4:2376216-2376235 | MS.gene062704:intron | 25.0% |
| AAACATACCCTTAAGTAGAA+AGG | - | chr1.4:2376318-2376337 | None:intergenic | 30.0% | |
| AGAATATGGGTATATAACTC+TGG | + | chr1.4:2378028-2378047 | MS.gene062704:CDS | 30.0% | |
| ATCCACATTATTAAGATGTC+AGG | - | chr1.4:2376926-2376945 | None:intergenic | 30.0% | |
| CATGTTAAGGATATCAAAAG+TGG | - | chr1.4:2377127-2377146 | None:intergenic | 30.0% | |
| CATGTTATTAAGATGTGGTA+AGG | - | chr1.4:2377013-2377032 | None:intergenic | 30.0% | |
| CTTACCACATCTTAATAACA+TGG | + | chr1.4:2377011-2377030 | MS.gene062704:intron | 30.0% | |
| GAACCTTACTGTTCATAAAA+AGG | - | chr1.4:2378225-2378244 | None:intergenic | 30.0% | |
| GAAGTTAGCCATTCAATTTA+TGG | + | chr1.4:2376633-2376652 | MS.gene062704:intron | 30.0% | |
| GTAACTGCTATAACATCATT+AGG | + | chr1.4:2376570-2376589 | MS.gene062704:intron | 30.0% | |
| GTCTTTGATGAACCTAAAAT+GGG | + | chr1.4:2377980-2377999 | MS.gene062704:CDS | 30.0% | |
| GTTATATACCCATATTCTCA+TGG | - | chr1.4:2378026-2378045 | None:intergenic | 30.0% | |
| TAGGGACTACTTATATACTT+AGG | + | chr1.4:2376970-2376989 | MS.gene062704:intron | 30.0% | |
| TAGTTAACATGTACAATCAC+GGG | - | chr1.4:2378292-2378311 | None:intergenic | 30.0% | |
| TATGCCAACTTTCTTGATAT+TGG | - | chr1.4:2377654-2377673 | None:intergenic | 30.0% | |
| TATTTATAGGGATTCAGATG+TGG | + | chr1.4:2377907-2377926 | MS.gene062704:CDS | 30.0% | |
| TCCACATTATTAAGATGTCA+GGG | - | chr1.4:2376925-2376944 | None:intergenic | 30.0% | |
| TGGATTAAGGAACTCAATAT+AGG | + | chr1.4:2377031-2377050 | MS.gene062704:intron | 30.0% | |
| TGTCTTTGATGAACCTAAAA+TGG | + | chr1.4:2377979-2377998 | MS.gene062704:CDS | 30.0% | |
| TTCACCAATATCAAGAAAGT+TGG | + | chr1.4:2377647-2377666 | MS.gene062704:CDS | 30.0% | |
| ! | GTACCTTTTTATGAACAGTA+AGG | + | chr1.4:2378219-2378238 | MS.gene062704:CDS | 30.0% |
| ! | TGTTATGTTGTGTCATTAGA+TGG | + | chr1.4:2377277-2377296 | MS.gene062704:intron | 30.0% |
| ! | TTTAGCTCCTTTCTACTTAA+GGG | + | chr1.4:2376308-2376327 | MS.gene062704:intron | 30.0% |
| !! | TAGTTCTGAACTAATCACAA+TGG | + | chr1.4:2376757-2376776 | MS.gene062704:intron | 30.0% |
| !!! | GTAAGTTTTTTGAGACGATT+TGG | + | chr1.4:2376215-2376234 | MS.gene062704:intron | 30.0% |
| !!! | TTTTAGCTCCTTTCTACTTA+AGG | + | chr1.4:2376307-2376326 | MS.gene062704:intron | 30.0% |
| AGCTCAATTGAAGGAATTGT+TGG | - | chr1.4:2378070-2378089 | None:intergenic | 35.0% | |
| ATCATCCTGATAAACTTGCA+AGG | + | chr1.4:2378311-2378330 | MS.gene062704:CDS | 35.0% | |
| ATGCTCATACCATGAGAATA+TGG | + | chr1.4:2378014-2378033 | MS.gene062704:CDS | 35.0% | |
| ATTGAATCAACACCTTGATC+CGG | - | chr1.4:2377758-2377777 | None:intergenic | 35.0% | |
| CATAGCAATCATACAGCTTA+TGG | + | chr1.4:2377947-2377966 | MS.gene062704:CDS | 35.0% | |
| CGATCTAAAAGCTCAATTGA+AGG | - | chr1.4:2378079-2378098 | None:intergenic | 35.0% | |
| GTAGTTGAGTTCTATGTCAA+CGG | + | chr1.4:2378343-2378362 | MS.gene062704:CDS | 35.0% | |
| TAATGTGTTGGAGATGTTAC+AGG | + | chr1.4:2377619-2377638 | MS.gene062704:CDS | 35.0% | |
| TAGTTGAGTTCTATGTCAAC+GGG | + | chr1.4:2378344-2378363 | MS.gene062704:CDS | 35.0% | |
| TCCCTGACATCTTAATAATG+TGG | + | chr1.4:2376921-2376940 | MS.gene062704:intron | 35.0% | |
| TGCTCATACCATGAGAATAT+GGG | + | chr1.4:2378015-2378034 | MS.gene062704:CDS | 35.0% | |
| TTCATCCTTGCAAGTTTATC+AGG | - | chr1.4:2378319-2378338 | None:intergenic | 35.0% | |
| TTCTGTTATTCCCGATGAAT+CGG | + | chr1.4:2377523-2377542 | MS.gene062704:CDS | 35.0% | |
| TTGATGAACCTAAAATGGGT+TGG | + | chr1.4:2377984-2378003 | MS.gene062704:CDS | 35.0% | |
| ! | GATTGAATGGTTTTTGTCTC+TGG | - | chr1.4:2376014-2376033 | None:intergenic | 35.0% |
| ! | GCTTTCTAAAGAGAAAGCAT+GGG | + | chr1.4:2378111-2378130 | MS.gene062704:CDS | 35.0% |
| ! | TGATGAACCTAAAATGGGTT+GGG | + | chr1.4:2377985-2378004 | MS.gene062704:CDS | 35.0% |
| ! | TGTGATTAGTTCAGAACTAG+TGG | - | chr1.4:2376756-2376775 | None:intergenic | 35.0% |
| ! | TTTCTCTTTAGAAAGCCGAT+CGG | - | chr1.4:2378107-2378126 | None:intergenic | 35.0% |
| !! | AAAGTGTCTGTTTTCAGCTT+AGG | + | chr1.4:2376263-2376282 | MS.gene062704:intron | 35.0% |
| !! | TGTTGATTCAATTGCCAAGT+CGG | + | chr1.4:2377766-2377785 | MS.gene062704:CDS | 35.0% |
| !! | TTCAACGCATTAACTTGTTC+TGG | - | chr1.4:2377323-2377342 | None:intergenic | 35.0% |
| AAGAAGAACGCCGATGAAAA+CGG | - | chr1.4:2376059-2376078 | None:intergenic | 40.0% | |
| ATCCTTAACATGTGCCCTTA+GGG | + | chr1.4:2377135-2377154 | MS.gene062704:intron | 40.0% | |
| CATCATAACCAGGATGTGAA+GGG | - | chr1.4:2378168-2378187 | None:intergenic | 40.0% | |
| GATTCATCGGGAATAACAGA+AGG | - | chr1.4:2377524-2377543 | None:intergenic | 40.0% | |
| TAGATTGGCAAAACTCTTGG+CGG | + | chr1.4:2377553-2377572 | MS.gene062704:CDS | 40.0% | |
| TATCCTTAACATGTGCCCTT+AGG | + | chr1.4:2377134-2377153 | MS.gene062704:intron | 40.0% | |
| TCATGCTGCAAAGAGAACAA+TGG | + | chr1.4:2378192-2378211 | MS.gene062704:CDS | 40.0% | |
| TCTGGCTAACACTAATGTGT+TGG | + | chr1.4:2377607-2377626 | MS.gene062704:CDS | 40.0% | |
| TGTTGGAGATGTTACAGGTA+TGG | + | chr1.4:2377624-2377643 | MS.gene062704:CDS | 40.0% | |
| TTGAATCAACACCTTGATCC+GGG | - | chr1.4:2377757-2377776 | None:intergenic | 40.0% | |
| TTGAGAGAGTTTCTGCAACT+AGG | + | chr1.4:2377827-2377846 | MS.gene062704:CDS | 40.0% | |
| ! | CCAAGAGTTTTGCCAATCTA+GGG | - | chr1.4:2377553-2377572 | None:intergenic | 40.0% |
| ! | GGCTTTCTAAAGAGAAAGCA+TGG | + | chr1.4:2378110-2378129 | MS.gene062704:CDS | 40.0% |
| ! | GTTGATTCAATTGCCAAGTC+GGG | + | chr1.4:2377767-2377786 | MS.gene062704:CDS | 40.0% |
| ! | TAAAGAGGTCGTTGTTGTTC+TGG | + | chr1.4:2377589-2377608 | MS.gene062704:CDS | 40.0% |
| ! | TATCTAGCCCAACCCATTTT+AGG | - | chr1.4:2377995-2378014 | None:intergenic | 40.0% |
| ! | TTCGCTTTCTTTTCACCACA+CGG | + | chr1.4:2376088-2376107 | MS.gene062704:CDS | 40.0% |
| ACACAATATCGACATCCGAG+AGG | - | chr1.4:2377865-2377884 | None:intergenic | 45.0% | |
| ACCAACCTTGTGACTGAGAA+TGG | - | chr1.4:2376143-2376162 | None:intergenic | 45.0% | |
| ACCATTCAATCACCGCATCT+CGG | + | chr1.4:2376023-2376042 | MS.gene062704:CDS | 45.0% | |
| ACCATTCTCAGTCACAAGGT+TGG | + | chr1.4:2376139-2376158 | MS.gene062704:intron | 45.0% | |
| ATTCAATTGCCAAGTCGGGT+GGG | + | chr1.4:2377771-2377790 | MS.gene062704:CDS | 45.0% | |
| CCATCATAACCAGGATGTGA+AGG | - | chr1.4:2378169-2378188 | None:intergenic | 45.0% | |
| CCCTAGATTGGCAAAACTCT+TGG | + | chr1.4:2377550-2377569 | MS.gene062704:CDS | 45.0% | |
| CCTTCACATCCTGGTTATGA+TGG | + | chr1.4:2378166-2378185 | MS.gene062704:CDS | 45.0% | |
| GAAGCAGGTGAAAGGTCTAA+TGG | + | chr1.4:2377385-2377404 | MS.gene062704:CDS | 45.0% | |
| GAATTCTGAGCTGAAGAAGC+AGG | + | chr1.4:2377370-2377389 | MS.gene062704:CDS | 45.0% | |
| GATGTGGAGTCAATGTCAGA+TGG | + | chr1.4:2377923-2377942 | MS.gene062704:CDS | 45.0% | |
| GCATGAAGTCCATCATAACC+AGG | - | chr1.4:2378178-2378197 | None:intergenic | 45.0% | |
| GTGGAAATGAAGAAACCGTG+TGG | - | chr1.4:2376106-2376125 | None:intergenic | 45.0% | |
| TATAGAAGAGACCCGGATCA+AGG | + | chr1.4:2377743-2377762 | MS.gene062704:CDS | 45.0% | |
| TCAGACCATTCTCAGTCACA+AGG | + | chr1.4:2376135-2376154 | MS.gene062704:CDS | 45.0% | |
| TCCTGTCTATAGAAGAGACC+CGG | + | chr1.4:2377736-2377755 | MS.gene062704:CDS | 45.0% | |
| TCTAATGGAGAAGCTGCGTT+TGG | + | chr1.4:2377400-2377419 | MS.gene062704:CDS | 45.0% | |
| TGAATCGGTGAACCCTAGAT+TGG | + | chr1.4:2377538-2377557 | MS.gene062704:CDS | 45.0% | |
| ! | CTCTTTTACCCTTCACATCC+TGG | + | chr1.4:2378157-2378176 | MS.gene062704:CDS | 45.0% |
| ! | CTGACATGTGTTTTGTGCGA+CGG | + | chr1.4:2376366-2376385 | MS.gene062704:intron | 45.0% |
| ! | GCCAAGAGTTTTGCCAATCT+AGG | - | chr1.4:2377554-2377573 | None:intergenic | 45.0% |
| ! | GTTTTCATCGGCGTTCTTCT+TGG | + | chr1.4:2376058-2376077 | MS.gene062704:CDS | 45.0% |
| ! | TGTGCTAACTTGTGCCCTAA+GGG | - | chr1.4:2377152-2377171 | None:intergenic | 45.0% |
| ! | TGTGCTTGGTGAGAAACACA+AGG | + | chr1.4:2377460-2377479 | MS.gene062704:CDS | 45.0% |
| ! | TTCTCAGTCACAAGGTTGGT+TGG | + | chr1.4:2376143-2376162 | MS.gene062704:intron | 45.0% |
| ! | TTGTGCTAACTTGTGCCCTA+AGG | - | chr1.4:2377153-2377172 | None:intergenic | 45.0% |
| ! | TTTTAGATCGCGTTGCCGAT+CGG | + | chr1.4:2378089-2378108 | MS.gene062704:CDS | 45.0% |
| !! | AAACACAAGGCTGGTCCTTT+TGG | + | chr1.4:2377473-2377492 | MS.gene062704:CDS | 45.0% |
| !! | ACGGAACAGTTTGTTGTGCT+TGG | + | chr1.4:2377446-2377465 | MS.gene062704:CDS | 45.0% |
| !! | GAGAATGGTCTGAGTTGATG+CGG | - | chr1.4:2376128-2376147 | None:intergenic | 45.0% |
| !! | TCTAGGGTTCACCGATTCAT+CGG | - | chr1.4:2377537-2377556 | None:intergenic | 45.0% |
| AACGCCGATGAAAACGGCAA+CGG | - | chr1.4:2376053-2376072 | None:intergenic | 50.0% | |
| AATGGAGAAGCTGCGTTTGG+CGG | + | chr1.4:2377403-2377422 | MS.gene062704:CDS | 50.0% | |
| AGAGCCTTGACAGTGCCAAA+AGG | - | chr1.4:2377491-2377510 | None:intergenic | 50.0% | |
| AGGTTACAGCGTTCTCCTCT+CGG | + | chr1.4:2377847-2377866 | MS.gene062704:CDS | 50.0% | |
| CTTGGTGAGAAACACAAGGC+TGG | + | chr1.4:2377464-2377483 | MS.gene062704:CDS | 50.0% | |
| GAGCTGAAGAAGCAGGTGAA+AGG | + | chr1.4:2377377-2377396 | MS.gene062704:CDS | 50.0% | |
| GATTCAATTGCCAAGTCGGG+TGG | + | chr1.4:2377770-2377789 | MS.gene062704:CDS | 50.0% | |
| GCAAGGAAAGGGTCATGCTA+CGG | + | chr1.4:2377427-2377446 | MS.gene062704:CDS | 50.0% | |
| TCCGAGATGCGGTGATTGAA+TGG | - | chr1.4:2376027-2376046 | None:intergenic | 50.0% | |
| TCCGGGTCTCTTCTATAGAC+AGG | - | chr1.4:2377740-2377759 | None:intergenic | 50.0% | |
| ! | TGCCCTAAGGGCACATGTTA+AGG | - | chr1.4:2377140-2377159 | None:intergenic | 50.0% |
| ! | TGGTCCTTTTGGCACTGTCA+AGG | + | chr1.4:2377484-2377503 | MS.gene062704:CDS | 50.0% |
| !! | AATGGTCTGAGTTGATGCGG+TGG | - | chr1.4:2376125-2376144 | None:intergenic | 50.0% |
| !! | CTAGGGTTCACCGATTCATC+GGG | - | chr1.4:2377536-2377555 | None:intergenic | 50.0% |
| !!! | ATCGCCGTTGCCGTTTTCAT+CGG | + | chr1.4:2376046-2376065 | MS.gene062704:CDS | 50.0% |
| AGCATGATTCCCACCCGACT+TGG | - | chr1.4:2377783-2377802 | None:intergenic | 55.0% | |
| CGTTTGGCGGAGCAAGGAAA+GGG | + | chr1.4:2377416-2377435 | MS.gene062704:CDS | 55.0% | |
| GGTGGGAATCATGCTGTCTC+TGG | + | chr1.4:2377788-2377807 | MS.gene062704:CDS | 55.0% | |
| AAGCTGCGTTTGGCGGAGCA+AGG | + | chr1.4:2377410-2377429 | MS.gene062704:CDS | 60.0% | |
| GCGTTTGGCGGAGCAAGGAA+AGG | + | chr1.4:2377415-2377434 | MS.gene062704:CDS | 60.0% | |
| GCGCTCGACAGTTTCCCCGA+TGG | + | chr1.4:2378376-2378395 | MS.gene062704:CDS | 65.0% | |
| GGCAACGGCGATCCGAGATG+CGG | - | chr1.4:2376038-2376057 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.4 | gene | 2375983 | 2378408 | 2375983 | ID=MS.gene062704 |
| chr1.4 | mRNA | 2375983 | 2378408 | 2375983 | ID=MS.gene062704.t1;Parent=MS.gene062704 |
| chr1.4 | exon | 2375983 | 2376156 | 2375983 | ID=MS.gene062704.t1.exon1;Parent=MS.gene062704.t1 |
| chr1.4 | CDS | 2375983 | 2376156 | 2375983 | ID=cds.MS.gene062704.t1;Parent=MS.gene062704.t1 |
| chr1.4 | exon | 2377296 | 2378408 | 2377296 | ID=MS.gene062704.t1.exon2;Parent=MS.gene062704.t1 |
| chr1.4 | CDS | 2377296 | 2378408 | 2377296 | ID=cds.MS.gene062704.t1;Parent=MS.gene062704.t1 |
| Gene Sequence |
| Protein sequence |
