Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene063103.t1 | XP_003604031.1 | 91 | 312 | 14 | 1 | 1 | 312 | 1 | 298 | 2.40E-153 | 551.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene063103.t1 | G7J8H3 | 91.0 | 312 | 14 | 1 | 1 | 312 | 1 | 298 | 1.7e-153 | 551.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049260 | MS.gene063103 | 0.817954 | 2.52E-52 | -1.69E-46 |
| MS.gene049758 | MS.gene063103 | 0.815639 | 8.34E-52 | -1.69E-46 |
| MS.gene050128 | MS.gene063103 | 0.886397 | 3.54E-72 | -1.69E-46 |
| MS.gene050301 | MS.gene063103 | 0.805376 | 1.38E-49 | -1.69E-46 |
| MS.gene050581 | MS.gene063103 | 0.801948 | 7.08E-49 | -1.69E-46 |
| MS.gene050685 | MS.gene063103 | 0.82568 | 4.11E-54 | -1.69E-46 |
| MS.gene05101 | MS.gene063103 | 0.801723 | 7.87E-49 | -1.69E-46 |
| MS.gene051471 | MS.gene063103 | 0.805471 | 1.31E-49 | -1.69E-46 |
| MS.gene052078 | MS.gene063103 | 0.822446 | 2.36E-53 | -1.69E-46 |
| MS.gene052178 | MS.gene063103 | 0.867236 | 1.59E-65 | -1.69E-46 |
| MS.gene052326 | MS.gene063103 | 0.811275 | 7.59E-51 | -1.69E-46 |
| MS.gene053557 | MS.gene063103 | 0.802756 | 4.82E-49 | -1.69E-46 |
| MS.gene054011 | MS.gene063103 | 0.800169 | 1.63E-48 | -1.69E-46 |
| MS.gene054214 | MS.gene063103 | 0.839116 | 1.92E-57 | -1.69E-46 |
| MS.gene055207 | MS.gene063103 | 0.806914 | 6.53E-50 | -1.69E-46 |
| MS.gene055254 | MS.gene063103 | 0.800021 | 1.75E-48 | -1.69E-46 |
| MS.gene055277 | MS.gene063103 | 0.818415 | 1.98E-52 | -1.69E-46 |
| MS.gene055422 | MS.gene063103 | 0.816506 | 5.34E-52 | -1.69E-46 |
| MS.gene055604 | MS.gene063103 | 0.807271 | 5.48E-50 | -1.69E-46 |
| MS.gene058903 | MS.gene063103 | 0.822873 | 1.88E-53 | -1.69E-46 |
| MS.gene059228 | MS.gene063103 | 0.876115 | 1.80E-68 | -1.69E-46 |
| MS.gene059294 | MS.gene063103 | 0.811229 | 7.77E-51 | -1.69E-46 |
| MS.gene059894 | MS.gene063103 | 0.822818 | 1.93E-53 | -1.69E-46 |
| MS.gene059974 | MS.gene063103 | 0.854722 | 1.02E-61 | -1.69E-46 |
| MS.gene060005 | MS.gene063103 | 0.900473 | 7.07E-78 | -1.69E-46 |
| MS.gene06037 | MS.gene063103 | 0.82442 | 8.15E-54 | -1.69E-46 |
| MS.gene060799 | MS.gene063103 | 0.807927 | 3.98E-50 | -1.69E-46 |
| MS.gene060800 | MS.gene063103 | 0.840837 | 6.84E-58 | -1.69E-46 |
| MS.gene060801 | MS.gene063103 | 0.808974 | 2.38E-50 | -1.69E-46 |
| MS.gene061049 | MS.gene063103 | 0.815092 | 1.10E-51 | -1.69E-46 |
| MS.gene061112 | MS.gene063103 | 0.882133 | 1.34E-70 | -1.69E-46 |
| MS.gene061113 | MS.gene063103 | 0.805005 | 1.64E-49 | -1.69E-46 |
| MS.gene061265 | MS.gene063103 | 0.880832 | 3.97E-70 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene063103.t1 | MTR_3g117760 | 91.667 | 312 | 12 | 2 | 1 | 312 | 1 | 298 | 0.0 | 558 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene063103.t1 | AT2G16630 | 46.348 | 356 | 136 | 6 | 7 | 312 | 9 | 359 | 1.42e-100 | 300 |
Find 87 sgRNAs with CRISPR-Local
Find 206 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAGGATCTCCTCTCCCTTTC+AGG | 0.175349 | 3.3:-95672309 | None:intergenic |
| GGTGCCAATGTTGGTGGTGG+TGG | 0.190043 | 3.3:-95671326 | None:intergenic |
| ATGGTGGAAGTTGTGGCATT+GGG | 0.241279 | 3.3:-95671385 | None:intergenic |
| GATGGACATGCTGAAGCTTC+TGG | 0.264920 | 3.3:-95671425 | None:intergenic |
| AATGTTGGTGGTGGTGGGGA+TGG | 0.300659 | 3.3:-95671320 | None:intergenic |
| ACAAAAGTAGCTGTAGCTTT+TGG | 0.304044 | 3.3:+95672238 | MS.gene063103:CDS |
| CATTTCATGAGGGCTAATTC+TGG | 0.314423 | 3.3:+95672475 | MS.gene063103:CDS |
| AAGGGAGAGGAGATCCTTAC+AGG | 0.324413 | 3.3:+95672314 | MS.gene063103:CDS |
| ACACATGAATTATGCTTTGA+TGG | 0.330439 | 3.3:+95672420 | MS.gene063103:CDS |
| CAAGAGAAGAAACAACAAAT+TGG | 0.341479 | 3.3:+95671066 | MS.gene063103:CDS |
| GTGCCAATGTTGGTGGTGGT+GGG | 0.345243 | 3.3:-95671325 | None:intergenic |
| CTCCAATAGCATTCATATTC+CGG | 0.351920 | 3.3:-95672199 | None:intergenic |
| AAAATCCAAGACTCATGTTT+AGG | 0.352973 | 3.3:+95671213 | MS.gene063103:CDS |
| TCTAACATTCATGGAGTTGC+CGG | 0.354500 | 3.3:+95669650 | None:intergenic |
| ATTCTTTCAGTGGCCATTGA+TGG | 0.372198 | 3.3:+95669699 | MS.gene063103:CDS |
| ATGTTGGTGGTGGTGGGGAT+GGG | 0.374966 | 3.3:-95671319 | None:intergenic |
| GAAGAAACAACAAATTGGTT+TGG | 0.375618 | 3.3:+95671071 | MS.gene063103:CDS |
| CAAGTGGATGGTAAGAGAAT+TGG | 0.385574 | 3.3:-95672387 | None:intergenic |
| AATGGTGGAAGTTGTGGCAT+TGG | 0.390842 | 3.3:-95671386 | None:intergenic |
| AGTTAGATCTCACCATTAAC+AGG | 0.396284 | 3.3:-95669801 | None:intergenic |
| TGCCGGAATATGAATGCTAT+TGG | 0.408426 | 3.3:+95672197 | MS.gene063103:CDS |
| ATCTGCCTTTGTTCCATCAA+TGG | 0.412809 | 3.3:-95669712 | None:intergenic |
| CATGTCTCGGGAAATAATAA+TGG | 0.419703 | 3.3:+95671146 | MS.gene063103:CDS |
| ATGGTTGCAGCAAGGAAATA+TGG | 0.433099 | 3.3:+95672262 | MS.gene063103:CDS |
| AGCTATACAATGAGGTTTGA+TGG | 0.433754 | 3.3:+95671095 | MS.gene063103:CDS |
| TGGTGGTGGTGGGGATGGGT+TGG | 0.440191 | 3.3:-95671315 | None:intergenic |
| ATGTGGAGGAGGAGAAGAAA+TGG | 0.446281 | 3.3:-95671351 | None:intergenic |
| TGCCAATGTTGGTGGTGGTG+GGG | 0.465868 | 3.3:-95671324 | None:intergenic |
| TGGTTGTTCTGCACATGTCT+CGG | 0.469204 | 3.3:+95671133 | MS.gene063103:CDS |
| TTTGATGGAGCACCAGACTT+AGG | 0.482264 | 3.3:+95671110 | MS.gene063103:CDS |
| ATGAGGGCTAATTCTGGTGC+TGG | 0.483178 | 3.3:+95672481 | MS.gene063103:CDS |
| TGCTTTGATGGGCTCAACTA+GGG | 0.485464 | 3.3:+95672432 | MS.gene063103:CDS |
| CAGTATTGCATAGGTTGAGC+AGG | 0.486574 | 3.3:-95671281 | None:intergenic |
| AACATCCTAAACATGAGTCT+TGG | 0.489630 | 3.3:-95671218 | None:intergenic |
| GGTTGTTCTGCACATGTCTC+GGG | 0.491091 | 3.3:+95671134 | MS.gene063103:CDS |
| TGGTGGAAGTTGTGGCATTG+GGG | 0.492351 | 3.3:-95671384 | None:intergenic |
| CACATGAATTATGCTTTGAT+GGG | 0.492608 | 3.3:+95672421 | MS.gene063103:CDS |
| GGTGGTGCCAATGTTGGTGG+TGG | 0.493754 | 3.3:-95671329 | None:intergenic |
| TGTGGAGGAGGAGAAGAAAT+GGG | 0.494289 | 3.3:-95671350 | None:intergenic |
| ATGCTTTGATGGGCTCAACT+AGG | 0.495913 | 3.3:+95672431 | MS.gene063103:CDS |
| GTTGCAAACAAAAGCTTCTC+CGG | 0.497432 | 3.3:-95669669 | None:intergenic |
| ATCCCCACCACCACCAACAT+TGG | 0.499035 | 3.3:+95671322 | MS.gene063103:CDS |
| GCACCTTCACCACAACTCAT+TGG | 0.503873 | 3.3:-95671179 | None:intergenic |
| TGTCATGTAGTGACAACAAT+GGG | 0.513625 | 3.3:+95671030 | MS.gene063103:CDS |
| CATGTTTAGGATGTTTGACA+TGG | 0.532543 | 3.3:+95671226 | MS.gene063103:CDS |
| TCTCTCAAAAGAGTCCTGTA+AGG | 0.534067 | 3.3:-95672328 | None:intergenic |
| GCAGAACAACCACCTAAGTC+TGG | 0.541167 | 3.3:-95671122 | None:intergenic |
| CAATTCTCTTACCATCCACT+TGG | 0.543024 | 3.3:+95672388 | MS.gene063103:CDS |
| CGGAATATGAATGCTATTGG+AGG | 0.544236 | 3.3:+95672200 | MS.gene063103:CDS |
| CAGTGATAAACTTACTGTGA+TGG | 0.555843 | 3.3:-95671443 | None:intergenic |
| TTACTGCTTATCATTTCATG+AGG | 0.557628 | 3.3:+95672464 | MS.gene063103:CDS |
| TAGGTTGAGCAGGCTGAGCA+AGG | 0.559848 | 3.3:-95671271 | None:intergenic |
| ATGAGTTGTGGTGAAGGTGC+TGG | 0.561315 | 3.3:+95671182 | MS.gene063103:CDS |
| TGATAGGAAGTGGACAATGC+CGG | 0.564202 | 3.3:+95672180 | MS.gene063103:intron |
| ATGGGTGGTGCCAATGTTGG+TGG | 0.567999 | 3.3:-95671332 | None:intergenic |
| GATGTTGAGCAGTATTGCAT+AGG | 0.569435 | 3.3:-95671290 | None:intergenic |
| AAAATCATTGGTGGTAATGG+TGG | 0.570401 | 3.3:-95671401 | None:intergenic |
| GGTGGAAGTTGTGGCATTGG+GGG | 0.571199 | 3.3:-95671383 | None:intergenic |
| TTTGTGATCAATGCAAAGAC+GGG | 0.581900 | 3.3:+95669757 | MS.gene063103:CDS |
| GGTAGGTTGAAATGTGGAGG+AGG | 0.582342 | 3.3:-95671362 | None:intergenic |
| GGTGGTAATGGTGGAAGTTG+TGG | 0.582776 | 3.3:-95671392 | None:intergenic |
| ACATTGTGGTATGGCCTGAA+AGG | 0.589527 | 3.3:+95672295 | MS.gene063103:CDS |
| TGGTATGGCCTGAAAGGGAG+AGG | 0.589868 | 3.3:+95672301 | MS.gene063103:CDS |
| TACTGCTTATCATTTCATGA+GGG | 0.598834 | 3.3:+95672465 | MS.gene063103:CDS |
| ATTTGTGATCAATGCAAAGA+CGG | 0.604556 | 3.3:+95669756 | MS.gene063103:CDS |
| TGAGCAGGCTGAGCAAGGAG+TGG | 0.605851 | 3.3:-95671266 | None:intergenic |
| GAAATGGGTGGTGCCAATGT+TGG | 0.606306 | 3.3:-95671335 | None:intergenic |
| GATGGAGCACCAGACTTAGG+TGG | 0.611734 | 3.3:+95671113 | MS.gene063103:CDS |
| CATTGTGGTATGGCCTGAAA+GGG | 0.612379 | 3.3:+95672296 | MS.gene063103:CDS |
| GGACCAATGAGTTGTGGTGA+AGG | 0.613433 | 3.3:+95671176 | MS.gene063103:CDS |
| AGTGGCCATTGATGGAACAA+AGG | 0.622178 | 3.3:+95669707 | MS.gene063103:CDS |
| GGTTTGGAAGCTATACAATG+AGG | 0.622859 | 3.3:+95671087 | MS.gene063103:CDS |
| GAATATGAATGCTATTGGAG+GGG | 0.629266 | 3.3:+95672202 | MS.gene063103:CDS |
| GGAAATAATAATGGACAAGG+AGG | 0.636968 | 3.3:+95671155 | MS.gene063103:CDS |
| CTGTCATGTAGTGACAACAA+TGG | 0.641151 | 3.3:+95671029 | MS.gene063103:CDS |
| TCGGGAAATAATAATGGACA+AGG | 0.644592 | 3.3:+95671152 | MS.gene063103:CDS |
| AAGGCAGATACTATGCTCAC+CGG | 0.644788 | 3.3:+95669726 | MS.gene063103:CDS |
| TTGATCACAAATGACAGTGC+CGG | 0.647531 | 3.3:-95669745 | None:intergenic |
| ACAGACATGACATTGTGGTA+TGG | 0.658654 | 3.3:+95672286 | MS.gene063103:CDS |
| GGAATATGAATGCTATTGGA+GGG | 0.672296 | 3.3:+95672201 | MS.gene063103:CDS |
| CAAGGAGGACCAATGAGTTG+TGG | 0.682632 | 3.3:+95671170 | MS.gene063103:CDS |
| ATGTGTGTGACTACACCAAG+TGG | 0.706120 | 3.3:-95672403 | None:intergenic |
| GGAGGAGGAGAAGAAATGGG+TGG | 0.708291 | 3.3:-95671347 | None:intergenic |
| GTGTGACTACACCAAGTGGA+TGG | 0.711817 | 3.3:-95672399 | None:intergenic |
| TGACATGGAGATGTATGCTG+TGG | 0.712430 | 3.3:+95671241 | MS.gene063103:CDS |
| TGAAATGATAAGCAGTAACG+AGG | 0.716584 | 3.3:-95672459 | None:intergenic |
| ATGGTACAGACATGACATTG+TGG | 0.735250 | 3.3:+95672281 | MS.gene063103:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TCTTTAAACTTATTATTATT+AGG | - | chr3.3:95671818-95671837 | None:intergenic | 10.0% |
| !! | TTCAATAAATACAATTAATT+TGG | + | chr3.3:95670926-95670945 | MS.gene063103:intron | 10.0% |
| !! | TTGTAAATTATTATTATAAC+CGG | + | chr3.3:95672085-95672104 | MS.gene063103:intron | 10.0% |
| !!! | TATTTTCAACTAATTTTTTT+TGG | - | chr3.3:95671875-95671894 | None:intergenic | 10.0% |
| !! | AATAATAAGTTTAAAGACTT+TGG | + | chr3.3:95671821-95671840 | MS.gene063103:intron | 15.0% |
| !! | TGAAATCTTATTATCATTAA+TGG | - | chr3.3:95671485-95671504 | None:intergenic | 15.0% |
| !! | TGTAAAATTACTAAAAGAAA+TGG | + | chr3.3:95671612-95671631 | MS.gene063103:intron | 15.0% |
| !! | TTTCAAATAAAAACTCATAA+TGG | - | chr3.3:95670312-95670331 | None:intergenic | 15.0% |
| !!! | CTTTTAGTTTTTTTTCTTTT+TGG | - | chr3.3:95670063-95670082 | None:intergenic | 15.0% |
| !!! | TACTCAAAAAATGTATTTTT+AGG | - | chr3.3:95671793-95671812 | None:intergenic | 15.0% |
| !!! | TATGAGTTTTTATTTGAAAT+AGG | + | chr3.3:95670313-95670332 | MS.gene063103:intron | 15.0% |
| !! | AAATAAGCAAAATAAGCATT+GGG | + | chr3.3:95670519-95670538 | MS.gene063103:intron | 20.0% |
| !! | ATGAAAGATGAATAAATATC+CGG | - | chr3.3:95672107-95672126 | None:intergenic | 20.0% |
| !! | TCAGTTCTATATTAGTAATT+AGG | + | chr3.3:95670618-95670637 | MS.gene063103:intron | 20.0% |
| !! | TTAAATGCACAAAATTTAAG+AGG | + | chr3.3:95670434-95670453 | MS.gene063103:intron | 20.0% |
| !!! | AAATTGTACTATTTGTTAAG+TGG | - | chr3.3:95670586-95670605 | None:intergenic | 20.0% |
| !!! | AACATTTTTAATTCTTTCAG+TGG | + | chr3.3:95669689-95669708 | MS.gene063103:CDS | 20.0% |
| !!! | AAGAGGATGTTTTTATTTTT+GGG | + | chr3.3:95670451-95670470 | MS.gene063103:intron | 20.0% |
| !!! | AATGTTAACCTGTATTTTTA+AGG | + | chr3.3:95670338-95670357 | MS.gene063103:intron | 20.0% |
| !!! | ACAATTTAGTTTTTTCAATG+CGG | + | chr3.3:95670208-95670227 | MS.gene063103:intron | 20.0% |
| !!! | ATATGTTTTTAATTGTGACA+TGG | + | chr3.3:95670549-95670568 | MS.gene063103:intron | 20.0% |
| !!! | GGTAAAAATTTGAGTTTAAA+AGG | + | chr3.3:95671842-95671861 | MS.gene063103:intron | 20.0% |
| !!! | GTTTTGAAAATAGTAGAATA+TGG | + | chr3.3:95671713-95671732 | MS.gene063103:intron | 20.0% |
| !!! | TAAGAGGATGTTTTTATTTT+TGG | + | chr3.3:95670450-95670469 | MS.gene063103:intron | 20.0% |
| !!! | TGTAAAGTATTTGATTTGAT+AGG | + | chr3.3:95672164-95672183 | MS.gene063103:intron | 20.0% |
| ! | AAATGTATGGTACTAATAGA+TGG | - | chr3.3:95669876-95669895 | None:intergenic | 25.0% |
| ! | GAAATAAGCAAAATAAGCAT+TGG | + | chr3.3:95670518-95670537 | MS.gene063103:intron | 25.0% |
| ! | GTCAATAAAATCTATGACAT+AGG | - | chr3.3:95670981-95671000 | None:intergenic | 25.0% |
| ! | TGAGTTTATGAACTATCTTA+CGG | - | chr3.3:95670146-95670165 | None:intergenic | 25.0% |
| ! | TTATTGACCAAATTTAATGC+AGG | + | chr3.3:95670993-95671012 | MS.gene063103:intron | 25.0% |
| ! | TTTCCTTTCCATAAACTAAA+TGG | - | chr3.3:95670254-95670273 | None:intergenic | 25.0% |
| !! | AAATTTGAGTTTAAAAGGCT+AGG | + | chr3.3:95671847-95671866 | MS.gene063103:intron | 25.0% |
| !! | ATACTATTTTCACTAAGAGT+CGG | + | chr3.3:95671519-95671538 | MS.gene063103:intron | 25.0% |
| !! | TAATGGTTCCATTTAGTTTA+TGG | + | chr3.3:95670243-95670262 | MS.gene063103:intron | 25.0% |
| !!! | ACTAATATAGAACTGACTTT+TGG | - | chr3.3:95670614-95670633 | None:intergenic | 25.0% |
| !!! | TCATTCAACTCATTTTAGTT+TGG | + | chr3.3:95669898-95669917 | MS.gene063103:intron | 25.0% |
| AAAATCCAAGACTCATGTTT+AGG | + | chr3.3:95671213-95671232 | MS.gene063103:CDS | 30.0% | |
| AACTTGTGCCTTAAAAATAC+AGG | - | chr3.3:95670349-95670368 | None:intergenic | 30.0% | |
| ACACATGAATTATGCTTTGA+TGG | + | chr3.3:95672420-95672439 | MS.gene063103:CDS | 30.0% | |
| ACTATGATAGAGGTTCAATT+TGG | - | chr3.3:95669943-95669962 | None:intergenic | 30.0% | |
| ATACACAACAACAACAACAA+AGG | - | chr3.3:95670743-95670762 | None:intergenic | 30.0% | |
| ATTGAACCTCTATCATAGTT+TGG | + | chr3.3:95669944-95669963 | MS.gene063103:intron | 30.0% | |
| ATTTGTGATCAATGCAAAGA+CGG | + | chr3.3:95669756-95669775 | MS.gene063103:CDS | 30.0% | |
| CAAATGGCAAGAACTATTAA+CGG | - | chr3.3:95669990-95670009 | None:intergenic | 30.0% | |
| CAAGAGAAGAAACAACAAAT+TGG | + | chr3.3:95671066-95671085 | MS.gene063103:CDS | 30.0% | |
| CACATGAATTATGCTTTGAT+GGG | + | chr3.3:95672421-95672440 | MS.gene063103:CDS | 30.0% | |
| GAAGAAACAACAAATTGGTT+TGG | + | chr3.3:95671071-95671090 | MS.gene063103:CDS | 30.0% | |
| GAGTTGAATGACAAAATGTA+TGG | - | chr3.3:95669889-95669908 | None:intergenic | 30.0% | |
| GAGTTTATGAACTATCTTAC+GGG | - | chr3.3:95670145-95670164 | None:intergenic | 30.0% | |
| GATTGACCATTATACTAGTT+CGG | - | chr3.3:95670018-95670037 | None:intergenic | 30.0% | |
| GTAGAATATGGTGATCTAAA+CGG | + | chr3.3:95671725-95671744 | MS.gene063103:intron | 30.0% | |
| TACTGCTTATCATTTCATGA+GGG | + | chr3.3:95672465-95672484 | MS.gene063103:CDS | 30.0% | |
| TAGAATATGGTGATCTAAAC+GGG | + | chr3.3:95671726-95671745 | MS.gene063103:intron | 30.0% | |
| TCAAAAAGAAGTTCAACAGT+TGG | + | chr3.3:95670669-95670688 | MS.gene063103:intron | 30.0% | |
| TTACTGCTTATCATTTCATG+AGG | + | chr3.3:95672464-95672483 | MS.gene063103:CDS | 30.0% | |
| TTTCAGCTAAGACAAAACAA+AGG | - | chr3.3:95670863-95670882 | None:intergenic | 30.0% | |
| ! | AATTTTTCATTGCCTCTAGT+TGG | + | chr3.3:95670881-95670900 | MS.gene063103:intron | 30.0% |
| ! | ATTTTTCATTGCCTCTAGTT+GGG | + | chr3.3:95670882-95670901 | MS.gene063103:intron | 30.0% |
| ! | CTTTTCGATTATCCTGTTAA+TGG | + | chr3.3:95669789-95669808 | MS.gene063103:CDS | 30.0% |
| ! | GTTCCATTTAGTTTATGGAA+AGG | + | chr3.3:95670248-95670267 | MS.gene063103:intron | 30.0% |
| ! | TTTTGCACCTGCATTAAATT+TGG | - | chr3.3:95671003-95671022 | None:intergenic | 30.0% |
| !! | GTATTTGATTTGATAGGAAG+TGG | + | chr3.3:95672170-95672189 | MS.gene063103:intron | 30.0% |
| !!! | TGCGGTTCATTTTGATTTAA+TGG | + | chr3.3:95670226-95670245 | MS.gene063103:intron | 30.0% |
| AAAAAAGTCCAACACTGTTC+AGG | + | chr3.3:95671926-95671945 | MS.gene063103:intron | 35.0% | |
| AACATCCTAAACATGAGTCT+TGG | - | chr3.3:95671221-95671240 | None:intergenic | 35.0% | |
| ACCATACCAAACTATGATAG+AGG | - | chr3.3:95669953-95669972 | None:intergenic | 35.0% | |
| ACCATTATACTAGTTCGGTT+TGG | - | chr3.3:95670013-95670032 | None:intergenic | 35.0% | |
| ACCTCTATCATAGTTTGGTA+TGG | + | chr3.3:95669949-95669968 | MS.gene063103:intron | 35.0% | |
| AGCTATACAATGAGGTTTGA+TGG | + | chr3.3:95671095-95671114 | MS.gene063103:CDS | 35.0% | |
| AGTTAGATCTCACCATTAAC+AGG | - | chr3.3:95669804-95669823 | None:intergenic | 35.0% | |
| CAGTGATAAACTTACTGTGA+TGG | - | chr3.3:95671446-95671465 | None:intergenic | 35.0% | |
| CATGTCTCGGGAAATAATAA+TGG | + | chr3.3:95671146-95671165 | MS.gene063103:CDS | 35.0% | |
| CTCCAATAGCATTCATATTC+CGG | - | chr3.3:95672202-95672221 | None:intergenic | 35.0% | |
| GAATATGAATGCTATTGGAG+GGG | + | chr3.3:95672202-95672221 | MS.gene063103:CDS | 35.0% | |
| GATAGAGGTTCAATTTGGTT+CGG | - | chr3.3:95669938-95669957 | None:intergenic | 35.0% | |
| GGAAAGGAAACATGAAAAGT+GGG | + | chr3.3:95670264-95670283 | MS.gene063103:intron | 35.0% | |
| GGAATATGAATGCTATTGGA+GGG | + | chr3.3:95672201-95672220 | MS.gene063103:CDS | 35.0% | |
| TATGCTAACTTATGCCCTAA+AGG | - | chr3.3:95670491-95670510 | None:intergenic | 35.0% | |
| TCACATGTTGTGACTTTGTA+AGG | + | chr3.3:95670793-95670812 | MS.gene063103:intron | 35.0% | |
| TGAAATGATAAGCAGTAACG+AGG | - | chr3.3:95672462-95672481 | None:intergenic | 35.0% | |
| TGGAAAGGAAACATGAAAAG+TGG | + | chr3.3:95670263-95670282 | MS.gene063103:intron | 35.0% | |
| TGGCGAACAAATGAAAATAG+AGG | + | chr3.3:95671749-95671768 | MS.gene063103:intron | 35.0% | |
| TGTCATGTAGTGACAACAAT+GGG | + | chr3.3:95671030-95671049 | MS.gene063103:CDS | 35.0% | |
| TTGCTTAACATGTGCCTTTA+GGG | + | chr3.3:95670474-95670493 | MS.gene063103:intron | 35.0% | |
| TTTGTGATCAATGCAAAGAC+GGG | + | chr3.3:95669757-95669776 | MS.gene063103:CDS | 35.0% | |
| ! | ACAAAAGTAGCTGTAGCTTT+TGG | + | chr3.3:95672238-95672257 | MS.gene063103:CDS | 35.0% |
| ! | CATGTTTAGGATGTTTGACA+TGG | + | chr3.3:95671226-95671245 | MS.gene063103:CDS | 35.0% |
| ! | GAAGCTTCTGGAAAAATCAT+TGG | - | chr3.3:95671416-95671435 | None:intergenic | 35.0% |
| ! | GGAAAAATCATTGGTGGTAA+TGG | - | chr3.3:95671407-95671426 | None:intergenic | 35.0% |
| !! | AAAATCATTGGTGGTAATGG+TGG | - | chr3.3:95671404-95671423 | None:intergenic | 35.0% |
| !! | GGAAATAATAATGGACAAGG+AGG | + | chr3.3:95671155-95671174 | MS.gene063103:CDS | 35.0% |
| !! | TAAGCAAAATAAGCATTGGG+TGG | + | chr3.3:95670522-95670541 | MS.gene063103:intron | 35.0% |
| !! | TCGGGAAATAATAATGGACA+AGG | + | chr3.3:95671152-95671171 | MS.gene063103:CDS | 35.0% |
| !!! | AACTCATTTTAGTTTGGCTC+AGG | + | chr3.3:95669904-95669923 | MS.gene063103:intron | 35.0% |
| !!! | ACTCATTTTAGTTTGGCTCA+GGG | + | chr3.3:95669905-95669924 | MS.gene063103:intron | 35.0% |
| !!! | TAGACTAATACTTTTTCGCC+TGG | + | chr3.3:95670770-95670789 | MS.gene063103:intron | 35.0% |
| AATATGGTGATCTAAACGGG+TGG | + | chr3.3:95671729-95671748 | MS.gene063103:intron | 40.0% | |
| ACAGACATGACATTGTGGTA+TGG | + | chr3.3:95672286-95672305 | MS.gene063103:CDS | 40.0% | |
| ACCCTAACTAAAACAGGAGA+GGG | - | chr3.3:95670838-95670857 | None:intergenic | 40.0% | |
| ATCTGCCTTTGTTCCATCAA+TGG | - | chr3.3:95669715-95669734 | None:intergenic | 40.0% | |
| ATGGTACAGACATGACATTG+TGG | + | chr3.3:95672281-95672300 | MS.gene063103:CDS | 40.0% | |
| ATGGTTGCAGCAAGGAAATA+TGG | + | chr3.3:95672262-95672281 | MS.gene063103:CDS | 40.0% | |
| ATTCTTTCAGTGGCCATTGA+TGG | + | chr3.3:95669699-95669718 | MS.gene063103:CDS | 40.0% | |
| CAAGTGGATGGTAAGAGAAT+TGG | - | chr3.3:95672390-95672409 | None:intergenic | 40.0% | |
| CAATTCTCTTACCATCCACT+TGG | + | chr3.3:95672388-95672407 | MS.gene063103:CDS | 40.0% | |
| CATTTCATGAGGGCTAATTC+TGG | + | chr3.3:95672475-95672494 | MS.gene063103:CDS | 40.0% | |
| CGGAATATGAATGCTATTGG+AGG | + | chr3.3:95672200-95672219 | MS.gene063103:CDS | 40.0% | |
| CTGTCATGTAGTGACAACAA+TGG | + | chr3.3:95671029-95671048 | MS.gene063103:CDS | 40.0% | |
| GATGTTGAGCAGTATTGCAT+AGG | - | chr3.3:95671293-95671312 | None:intergenic | 40.0% | |
| GCCAAACCGAACTAGTATAA+TGG | + | chr3.3:95670009-95670028 | MS.gene063103:intron | 40.0% | |
| GGAAACATGAAAAGTGGGAA+AGG | + | chr3.3:95670269-95670288 | MS.gene063103:intron | 40.0% | |
| GGTTTGGAAGCTATACAATG+AGG | + | chr3.3:95671087-95671106 | MS.gene063103:CDS | 40.0% | |
| GTTCATAAACTCAACCAACC+TGG | + | chr3.3:95670153-95670172 | MS.gene063103:intron | 40.0% | |
| GTTGCAAACAAAAGCTTCTC+CGG | - | chr3.3:95669672-95669691 | None:intergenic | 40.0% | |
| GTTGCTTAACATGTGCCTTT+AGG | + | chr3.3:95670473-95670492 | MS.gene063103:intron | 40.0% | |
| TCTCTCAAAAGAGTCCTGTA+AGG | - | chr3.3:95672331-95672350 | None:intergenic | 40.0% | |
| TGCCGGAATATGAATGCTAT+TGG | + | chr3.3:95672197-95672216 | MS.gene063103:CDS | 40.0% | |
| TTGATCACAAATGACAGTGC+CGG | - | chr3.3:95669748-95669767 | None:intergenic | 40.0% | |
| ! | ATGAGTCTTGGATTTTGAGC+AGG | - | chr3.3:95671209-95671228 | None:intergenic | 40.0% |
| ! | GCTTCTGGAAAAATCATTGG+TGG | - | chr3.3:95671413-95671432 | None:intergenic | 40.0% |
| !! | ACAGGACTCTTTTGAGAGAA+GGG | + | chr3.3:95672332-95672351 | MS.gene063103:CDS | 40.0% |
| !! | AGTAGCTGTAGCTTTTGGAA+TGG | + | chr3.3:95672243-95672262 | MS.gene063103:CDS | 40.0% |
| !! | TACAGGACTCTTTTGAGAGA+AGG | + | chr3.3:95672331-95672350 | MS.gene063103:CDS | 40.0% |
| !! | TACTAGTTCGGTTTGGCAAA+TGG | - | chr3.3:95670006-95670025 | None:intergenic | 40.0% |
| AAAAGAAACACGCGCCAGAT+AGG | + | chr3.3:95671999-95672018 | MS.gene063103:intron | 45.0% | |
| AAAGAAACACGCGCCAGATA+GGG | + | chr3.3:95672000-95672019 | MS.gene063103:intron | 45.0% | |
| AAGGCAGATACTATGCTCAC+CGG | + | chr3.3:95669726-95669745 | MS.gene063103:CDS | 45.0% | |
| AAGGCCACCCTAACTAAAAC+AGG | - | chr3.3:95670844-95670863 | None:intergenic | 45.0% | |
| ACATTGTGGTATGGCCTGAA+AGG | + | chr3.3:95672295-95672314 | MS.gene063103:CDS | 45.0% | |
| AGCATTTCACGAACTCAACC+AGG | - | chr3.3:95670174-95670193 | None:intergenic | 45.0% | |
| AGTGGCCATTGATGGAACAA+AGG | + | chr3.3:95669707-95669726 | MS.gene063103:CDS | 45.0% | |
| ATGTGGAGGAGGAGAAGAAA+TGG | - | chr3.3:95671354-95671373 | None:intergenic | 45.0% | |
| ATGTGTGTGACTACACCAAG+TGG | - | chr3.3:95672406-95672425 | None:intergenic | 45.0% | |
| CAAAGTCACAACATGTGACC+AGG | - | chr3.3:95670791-95670810 | None:intergenic | 45.0% | |
| CACCCTAACTAAAACAGGAG+AGG | - | chr3.3:95670839-95670858 | None:intergenic | 45.0% | |
| CATTGTGGTATGGCCTGAAA+GGG | + | chr3.3:95672296-95672315 | MS.gene063103:CDS | 45.0% | |
| CCAACACATTAGGAGGTCTA+GGG | + | chr3.3:95671543-95671562 | MS.gene063103:intron | 45.0% | |
| CCCTAACTAAAACAGGAGAG+GGG | - | chr3.3:95670837-95670856 | None:intergenic | 45.0% | |
| CCTAACTAAAACAGGAGAGG+GGG | - | chr3.3:95670836-95670855 | None:intergenic | 45.0% | |
| CCTAGACCTCCTAATGTGTT+GGG | - | chr3.3:95671545-95671564 | None:intergenic | 45.0% | |
| TGACATGGAGATGTATGCTG+TGG | + | chr3.3:95671241-95671260 | MS.gene063103:CDS | 45.0% | |
| TGATAGGAAGTGGACAATGC+CGG | + | chr3.3:95672180-95672199 | MS.gene063103:intron | 45.0% | |
| TGGTTGTTCTGCACATGTCT+CGG | + | chr3.3:95671133-95671152 | MS.gene063103:CDS | 45.0% | |
| TGTGGAGGAGGAGAAGAAAT+GGG | - | chr3.3:95671353-95671372 | None:intergenic | 45.0% | |
| TTTCACGAACTCAACCAGGT+TGG | - | chr3.3:95670170-95670189 | None:intergenic | 45.0% | |
| TTTCCTAAGCAGAAGGTCGT+AGG | - | chr3.3:95672032-95672051 | None:intergenic | 45.0% | |
| ! | AATGGTGGAAGTTGTGGCAT+TGG | - | chr3.3:95671389-95671408 | None:intergenic | 45.0% |
| ! | ATGGTGGAAGTTGTGGCATT+GGG | - | chr3.3:95671388-95671407 | None:intergenic | 45.0% |
| ! | ATTGGGGGTAGGTTGAAATG+TGG | - | chr3.3:95671371-95671390 | None:intergenic | 45.0% |
| ! | CAGTATTGCATAGGTTGAGC+AGG | - | chr3.3:95671284-95671303 | None:intergenic | 45.0% |
| ! | TTTGATGGAGCACCAGACTT+AGG | + | chr3.3:95671110-95671129 | MS.gene063103:CDS | 45.0% |
| !! | ATGCTTTGATGGGCTCAACT+AGG | + | chr3.3:95672431-95672450 | MS.gene063103:CDS | 45.0% |
| !! | TGCTTTGATGGGCTCAACTA+GGG | + | chr3.3:95672432-95672451 | MS.gene063103:CDS | 45.0% |
| !!! | CATTTTAGTTTGGCTCAGGG+AGG | + | chr3.3:95669908-95669927 | MS.gene063103:intron | 45.0% |
| !!! | CCCCTCTCCTGTTTTAGTTA+GGG | + | chr3.3:95670834-95670853 | MS.gene063103:intron | 45.0% |
| !!! | CTCTCCTGTTTTAGTTAGGG+TGG | + | chr3.3:95670837-95670856 | MS.gene063103:intron | 45.0% |
| !!! | CTTTTGGAATGGTTGCAGCA+AGG | + | chr3.3:95672254-95672273 | MS.gene063103:CDS | 45.0% |
| !!! | TTTTTTTTTTTTTTCTTTTA+CGG | - | chr3.3:95670719-95670738 | None:intergenic | 5.0% |
| AACAAGCGCTTGTAGCTCAG+TGG | - | chr3.3:95672067-95672086 | None:intergenic | 50.0% | |
| AACCACTGCCTGAACAGTGT+TGG | - | chr3.3:95671937-95671956 | None:intergenic | 50.0% | |
| AAGAAACACGCGCCAGATAG+GGG | + | chr3.3:95672001-95672020 | MS.gene063103:intron | 50.0% | |
| AAGAGTCGGCCCAACACATT+AGG | + | chr3.3:95671533-95671552 | MS.gene063103:intron | 50.0% | |
| AAGGATCTCCTCTCCCTTTC+AGG | - | chr3.3:95672312-95672331 | None:intergenic | 50.0% | |
| AAGGGAGAGGAGATCCTTAC+AGG | + | chr3.3:95672314-95672333 | MS.gene063103:CDS | 50.0% | |
| ATGAGGGCTAATTCTGGTGC+TGG | + | chr3.3:95672481-95672500 | MS.gene063103:CDS | 50.0% | |
| CAAGGAGGACCAATGAGTTG+TGG | + | chr3.3:95671170-95671189 | MS.gene063103:CDS | 50.0% | |
| CCCAACACATTAGGAGGTCT+AGG | + | chr3.3:95671542-95671561 | MS.gene063103:intron | 50.0% | |
| CCCTAGACCTCCTAATGTGT+TGG | - | chr3.3:95671546-95671565 | None:intergenic | 50.0% | |
| GAACCTACGACCTTCTGCTT+AGG | + | chr3.3:95672026-95672045 | MS.gene063103:intron | 50.0% | |
| GATGGACATGCTGAAGCTTC+TGG | - | chr3.3:95671428-95671447 | None:intergenic | 50.0% | |
| GCACCTTCACCACAACTCAT+TGG | - | chr3.3:95671182-95671201 | None:intergenic | 50.0% | |
| GCAGAACAACCACCTAAGTC+TGG | - | chr3.3:95671125-95671144 | None:intergenic | 50.0% | |
| GCGTCTGTTTCCTAAGCAGA+AGG | - | chr3.3:95672039-95672058 | None:intergenic | 50.0% | |
| GGACCAATGAGTTGTGGTGA+AGG | + | chr3.3:95671176-95671195 | MS.gene063103:CDS | 50.0% | |
| GGTTGTTCTGCACATGTCTC+GGG | + | chr3.3:95671134-95671153 | MS.gene063103:CDS | 50.0% | |
| GTGTGACTACACCAAGTGGA+TGG | - | chr3.3:95672402-95672421 | None:intergenic | 50.0% | |
| TGCCTCTAGTTGGGACAGTT+GGG | + | chr3.3:95670891-95670910 | MS.gene063103:intron | 50.0% | |
| TGGTGGAAGTTGTGGCATTG+GGG | - | chr3.3:95671387-95671406 | None:intergenic | 50.0% | |
| TTGCCTCTAGTTGGGACAGT+TGG | + | chr3.3:95670890-95670909 | MS.gene063103:intron | 50.0% | |
| ! | ATGAGTTGTGGTGAAGGTGC+TGG | + | chr3.3:95671182-95671201 | MS.gene063103:CDS | 50.0% |
| ! | GAAATGGGTGGTGCCAATGT+TGG | - | chr3.3:95671338-95671357 | None:intergenic | 50.0% |
| ! | GGTAGGTTGAAATGTGGAGG+AGG | - | chr3.3:95671365-95671384 | None:intergenic | 50.0% |
| !! | GGTGGTAATGGTGGAAGTTG+TGG | - | chr3.3:95671395-95671414 | None:intergenic | 50.0% |
| !!! | CCCCCTCTCCTGTTTTAGTT+AGG | + | chr3.3:95670833-95670852 | MS.gene063103:intron | 50.0% |
| AGTCGGCCCAACACATTAGG+AGG | + | chr3.3:95671536-95671555 | MS.gene063103:intron | 55.0% | |
| ATCCCCACCACCACCAACAT+TGG | + | chr3.3:95671322-95671341 | MS.gene063103:CDS | 55.0% | |
| GGAGGAGGAGAAGAAATGGG+TGG | - | chr3.3:95671350-95671369 | None:intergenic | 55.0% | |
| GTCCAACACTGTTCAGGCAG+TGG | + | chr3.3:95671932-95671951 | MS.gene063103:intron | 55.0% | |
| TCGTAGGTTCGACCCCTATC+TGG | - | chr3.3:95672016-95672035 | None:intergenic | 55.0% | |
| TGCCCAACTGTCCCAACTAG+AGG | - | chr3.3:95670896-95670915 | None:intergenic | 55.0% | |
| TGGTATGGCCTGAAAGGGAG+AGG | + | chr3.3:95672301-95672320 | MS.gene063103:CDS | 55.0% | |
| ! | ATGGGTGGTGCCAATGTTGG+TGG | - | chr3.3:95671335-95671354 | None:intergenic | 55.0% |
| ! | GAAGTTGTGGCATTGGGGGT+AGG | - | chr3.3:95671382-95671401 | None:intergenic | 55.0% |
| ! | GATGGAGCACCAGACTTAGG+TGG | + | chr3.3:95671113-95671132 | MS.gene063103:CDS | 55.0% |
| ! | GGGGGTAGGTTGAAATGTGG+AGG | - | chr3.3:95671368-95671387 | None:intergenic | 55.0% |
| ! | GGTGGAAGTTGTGGCATTGG+GGG | - | chr3.3:95671386-95671405 | None:intergenic | 55.0% |
| ! | TAGGTTGAGCAGGCTGAGCA+AGG | - | chr3.3:95671274-95671293 | None:intergenic | 55.0% |
| !! | AATGTTGGTGGTGGTGGGGA+TGG | - | chr3.3:95671323-95671342 | None:intergenic | 55.0% |
| !! | ATGTTGGTGGTGGTGGGGAT+GGG | - | chr3.3:95671322-95671341 | None:intergenic | 55.0% |
| !! | GTGCCAATGTTGGTGGTGGT+GGG | - | chr3.3:95671328-95671347 | None:intergenic | 55.0% |
| !! | TGCCAATGTTGGTGGTGGTG+GGG | - | chr3.3:95671327-95671346 | None:intergenic | 55.0% |
| AGTTGGGACAGTTGGGCAGC+TGG | + | chr3.3:95670898-95670917 | MS.gene063103:intron | 60.0% | |
| TGAGCAGGCTGAGCAAGGAG+TGG | - | chr3.3:95671269-95671288 | None:intergenic | 60.0% | |
| ! | GGTGGTGCCAATGTTGGTGG+TGG | - | chr3.3:95671332-95671351 | None:intergenic | 60.0% |
| !! | GGTGCCAATGTTGGTGGTGG+TGG | - | chr3.3:95671329-95671348 | None:intergenic | 60.0% |
| !! | TGGTGGTGGTGGGGATGGGT+TGG | - | chr3.3:95671318-95671337 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.3 | gene | 95669660 | 95672537 | 95669660 | ID=MS.gene063103 |
| chr3.3 | mRNA | 95669660 | 95672537 | 95669660 | ID=MS.gene063103.t1;Parent=MS.gene063103 |
| chr3.3 | exon | 95669660 | 95669810 | 95669660 | ID=MS.gene063103.t1.exon1;Parent=MS.gene063103.t1 |
| chr3.3 | CDS | 95669660 | 95669810 | 95669660 | ID=cds.MS.gene063103.t1;Parent=MS.gene063103.t1 |
| chr3.3 | exon | 95671015 | 95671450 | 95671015 | ID=MS.gene063103.t1.exon2;Parent=MS.gene063103.t1 |
| chr3.3 | CDS | 95671015 | 95671450 | 95671015 | ID=cds.MS.gene063103.t1;Parent=MS.gene063103.t1 |
| chr3.3 | exon | 95672186 | 95672537 | 95672186 | ID=MS.gene063103.t1.exon3;Parent=MS.gene063103.t1 |
| chr3.3 | CDS | 95672186 | 95672537 | 95672186 | ID=cds.MS.gene063103.t1;Parent=MS.gene063103.t1 |
| Gene Sequence |
| Protein sequence |
