Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06339.t1 | XP_024633665.1 | 69.8 | 371 | 94 | 9 | 1 | 364 | 1 | 360 | 7.70E-111 | 410.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06339.t1 | A0A396IZA5 | 69.8 | 371 | 94 | 9 | 1 | 364 | 1 | 360 | 5.6e-111 | 410.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050020 | MS.gene06339 | 0.843353 | 1.48E-58 | -1.69E-46 |
| MS.gene050137 | MS.gene06339 | 0.800127 | 1.67E-48 | -1.69E-46 |
| MS.gene050139 | MS.gene06339 | 0.826746 | 2.29E-54 | -1.69E-46 |
| MS.gene050226 | MS.gene06339 | 0.813105 | 3.03E-51 | -1.69E-46 |
| MS.gene050227 | MS.gene06339 | 0.814543 | 1.46E-51 | -1.69E-46 |
| MS.gene050228 | MS.gene06339 | 0.813919 | 2.01E-51 | -1.69E-46 |
| MS.gene050442 | MS.gene06339 | 0.813668 | 2.28E-51 | -1.69E-46 |
| MS.gene050586 | MS.gene06339 | 0.807131 | 5.87E-50 | -1.69E-46 |
| MS.gene050719 | MS.gene06339 | 0.803806 | 2.92E-49 | -1.69E-46 |
| MS.gene050721 | MS.gene06339 | 0.803589 | 3.24E-49 | -1.69E-46 |
| MS.gene050780 | MS.gene06339 | 0.828293 | 9.75E-55 | -1.69E-46 |
| MS.gene050807 | MS.gene06339 | 0.816086 | 6.63E-52 | -1.69E-46 |
| MS.gene051626 | MS.gene06339 | 0.842081 | 3.22E-58 | -1.69E-46 |
| MS.gene051789 | MS.gene06339 | 0.858566 | 7.54E-63 | -1.69E-46 |
| MS.gene052020 | MS.gene06339 | 0.800168 | 1.64E-48 | -1.69E-46 |
| MS.gene052142 | MS.gene06339 | 0.831309 | 1.80E-55 | -1.69E-46 |
| MS.gene052323 | MS.gene06339 | 0.815593 | 8.54E-52 | -1.69E-46 |
| MS.gene052665 | MS.gene06339 | 0.808324 | 3.28E-50 | -1.69E-46 |
| MS.gene052698 | MS.gene06339 | 0.856663 | 2.76E-62 | -1.69E-46 |
| MS.gene052967 | MS.gene06339 | 0.826679 | 2.38E-54 | -1.69E-46 |
| MS.gene053074 | MS.gene06339 | 0.852911 | 3.38E-61 | -1.69E-46 |
| MS.gene053204 | MS.gene06339 | 0.81333 | 2.70E-51 | -1.69E-46 |
| MS.gene053563 | MS.gene06339 | 0.821951 | 3.07E-53 | -1.69E-46 |
| MS.gene053630 | MS.gene06339 | 0.814006 | 1.92E-51 | -1.69E-46 |
| MS.gene054011 | MS.gene06339 | 0.800792 | 1.22E-48 | -1.69E-46 |
| MS.gene05415 | MS.gene06339 | 0.803549 | 3.31E-49 | -1.69E-46 |
| MS.gene05456 | MS.gene06339 | 0.842044 | 3.29E-58 | -1.69E-46 |
| MS.gene054596 | MS.gene06339 | 0.836029 | 1.19E-56 | -1.69E-46 |
| MS.gene055358 | MS.gene06339 | 0.80929 | 2.04E-50 | -1.69E-46 |
| MS.gene055359 | MS.gene06339 | 0.848183 | 7.21E-60 | -1.69E-46 |
| MS.gene058168 | MS.gene06339 | 0.857915 | 1.18E-62 | -1.69E-46 |
| MS.gene058636 | MS.gene06339 | 0.8079 | 4.03E-50 | -1.69E-46 |
| MS.gene059006 | MS.gene06339 | 0.877632 | 5.38E-69 | -1.69E-46 |
| MS.gene059124 | MS.gene06339 | 0.819017 | 1.45E-52 | -1.69E-46 |
| MS.gene059128 | MS.gene06339 | 0.803301 | 3.72E-49 | -1.69E-46 |
| MS.gene060572 | MS.gene06339 | 0.801831 | 7.48E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06339.t1 | MTR_3g097180 | 80.282 | 355 | 52 | 9 | 1 | 348 | 1 | 344 | 0.0 | 507 |
| MS.gene06339.t1 | MTR_1g026790 | 37.607 | 117 | 71 | 2 | 253 | 368 | 431 | 546 | 2.11e-16 | 80.9 |
| MS.gene06339.t1 | MTR_2g010820 | 39.450 | 109 | 64 | 2 | 261 | 368 | 427 | 534 | 2.35e-16 | 80.9 |
| MS.gene06339.t1 | MTR_1g026800 | 32.110 | 109 | 73 | 1 | 261 | 368 | 369 | 477 | 3.08e-12 | 68.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06339.t1 | AT4G01170 | 41.121 | 107 | 60 | 2 | 256 | 359 | 330 | 436 | 2.08e-17 | 83.6 |
| MS.gene06339.t1 | AT3G07730 | 40.404 | 99 | 57 | 2 | 263 | 359 | 367 | 465 | 3.69e-14 | 73.9 |
| MS.gene06339.t1 | AT3G07730 | 40.404 | 99 | 57 | 2 | 263 | 359 | 299 | 397 | 4.19e-14 | 73.6 |
| MS.gene06339.t1 | AT1G77270 | 37.624 | 101 | 61 | 1 | 261 | 359 | 571 | 671 | 1.72e-13 | 72.4 |
| MS.gene06339.t1 | AT1G77270 | 37.624 | 101 | 61 | 1 | 261 | 359 | 571 | 671 | 1.72e-13 | 72.4 |
Find 72 sgRNAs with CRISPR-Local
Find 183 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGATCCCATGTTCTCTTTCT+AGG | 0.150314 | 3.1:-77525759 | None:intergenic |
| ATCATCATGTTCAAAGAAAA+AGG | 0.196121 | 3.1:+77526118 | MS.gene06339:CDS |
| TCCATCATGATCTCCCTTAT+AGG | 0.226228 | 3.1:-77527126 | None:intergenic |
| ATCAAGTCTGAGTCGGCTTT+TGG | 0.239955 | 3.1:-77525882 | None:intergenic |
| CGCAGGAGACGCAAAACTTT+GGG | 0.279175 | 3.1:-77527473 | None:intergenic |
| TGGGAGTAGCAAAGCCTATA+AGG | 0.298108 | 3.1:+77527112 | MS.gene06339:CDS |
| GATGATGTGTATGTGAAATT+TGG | 0.315151 | 3.1:+77526089 | MS.gene06339:CDS |
| TGTCGATGAAAGTGTGAAAA+AGG | 0.317887 | 3.1:+77526406 | MS.gene06339:CDS |
| TTTCATTCTTAACAAGATTA+GGG | 0.340301 | 3.1:+77525800 | MS.gene06339:CDS |
| ATTTCATTCTTAACAAGATT+AGG | 0.340678 | 3.1:+77525799 | MS.gene06339:CDS |
| ATCTCACCTGCTTCATCTTC+AGG | 0.342233 | 3.1:+77525938 | MS.gene06339:CDS |
| CTAAACTCCGTCACTTTCCT+TGG | 0.360637 | 3.1:-77526981 | None:intergenic |
| GACTTAGTCGTGTGACTTCA+AGG | 0.364514 | 3.1:+77526177 | MS.gene06339:CDS |
| ATGGAGGGATCCATCGTGTT+TGG | 0.375665 | 3.1:+77528482 | MS.gene06339:CDS |
| CACGTAGAAATGCTCTTAAA+AGG | 0.376728 | 3.1:+77526297 | MS.gene06339:CDS |
| AACTCATGAAAGAAATTAAC+AGG | 0.379578 | 3.1:+77527009 | MS.gene06339:CDS |
| CTCTTTCTAGGGTTCACTGA+AGG | 0.383717 | 3.1:-77525747 | None:intergenic |
| GATCCCATGTTCTCTTTCTA+GGG | 0.386905 | 3.1:-77525758 | None:intergenic |
| GCGCAGGAGACGCAAAACTT+TGG | 0.405534 | 3.1:-77527474 | None:intergenic |
| AGTACGAGGAGGAACGAAAT+AGG | 0.408066 | 3.1:+77526009 | MS.gene06339:CDS |
| CAGGTGAGATTGTATAATAT+TGG | 0.416449 | 3.1:-77525925 | None:intergenic |
| TAATATAAAATTTGTGAAGA+AGG | 0.438820 | 3.1:-77525854 | None:intergenic |
| TCTTTCTAGGGTTCACTGAA+GGG | 0.467820 | 3.1:-77525746 | None:intergenic |
| TCATGTTGTAGATCTTCTAA+AGG | 0.481902 | 3.1:+77527424 | MS.gene06339:intron |
| AGAATGATGTGAACGTGAAT+GGG | 0.483464 | 3.1:+77526351 | MS.gene06339:CDS |
| GACTTCAAGGAAGGGTGGTA+GGG | 0.486903 | 3.1:+77526190 | MS.gene06339:CDS |
| CTTTCTAGGGTTCACTGAAG+GGG | 0.492279 | 3.1:-77525745 | None:intergenic |
| TGACTTCAAGGAAGGGTGGT+AGG | 0.494947 | 3.1:+77526189 | MS.gene06339:CDS |
| ATCATCCTTTCTTATTGTTG+TGG | 0.497020 | 3.1:-77528513 | None:intergenic |
| AGAAATTAATGCTCGAACGC+CGG | 0.497133 | 3.1:+77527067 | MS.gene06339:CDS |
| TTATGCTCTTCCTCGCAGTA+AGG | 0.497149 | 3.1:-77527032 | None:intergenic |
| AAGAATGATGTGAACGTGAA+TGG | 0.498557 | 3.1:+77526350 | MS.gene06339:CDS |
| TTGAATCATTTGAAGCGTGA+TGG | 0.498621 | 3.1:+77526038 | MS.gene06339:CDS |
| TAGGGACCCTAATACTCAAA+AGG | 0.500813 | 3.1:+77525818 | MS.gene06339:CDS |
| GGGAGTAGCAAAGCCTATAA+GGG | 0.517239 | 3.1:+77527113 | MS.gene06339:CDS |
| CAAGGAAGGGTGGTAGGGGT+AGG | 0.528491 | 3.1:+77526195 | MS.gene06339:CDS |
| GTGAACGTGAATGGGGAAGA+AGG | 0.529870 | 3.1:+77526359 | MS.gene06339:CDS |
| GATAATTAATGTGGAAAGCT+CGG | 0.530201 | 3.1:+77526469 | MS.gene06339:CDS |
| AATGCTCTTAAAAGGAAAAG+AGG | 0.535455 | 3.1:+77526305 | MS.gene06339:CDS |
| ACTTCAAGGAAGGGTGGTAG+GGG | 0.536732 | 3.1:+77526191 | MS.gene06339:CDS |
| GCCTATAAGGGAGATCATGA+TGG | 0.545167 | 3.1:+77527125 | MS.gene06339:CDS |
| AAGGAGATTCAAGATGATGA+TGG | 0.551660 | 3.1:+77526425 | MS.gene06339:CDS |
| TTTCTAGGGTTCACTGAAGG+GGG | 0.556159 | 3.1:-77525744 | None:intergenic |
| TGAGATTGTATAATATTGGA+TGG | 0.558685 | 3.1:-77525921 | None:intergenic |
| TTTGTTCCTGAAGATGAAGC+AGG | 0.564716 | 3.1:-77525944 | None:intergenic |
| AAGACGGAGCGTTCATGCCA+TGG | 0.578007 | 3.1:+77528463 | MS.gene06339:CDS |
| GAACTTTATCAAGTCTGAGT+CGG | 0.581290 | 3.1:-77525889 | None:intergenic |
| TAGTCGTGTGACTTCAAGGA+AGG | 0.585097 | 3.1:+77526181 | MS.gene06339:CDS |
| TATCTGCTGCTAAGAAACGT+TGG | 0.589299 | 3.1:+77526240 | MS.gene06339:CDS |
| TGAACCCTAGAAAGAGAACA+TGG | 0.591246 | 3.1:+77525754 | MS.gene06339:CDS |
| CGGAGCGTTCATGCCATGGA+GGG | 0.608980 | 3.1:+77528467 | MS.gene06339:CDS |
| TGTGATTGAGATAATTAATG+TGG | 0.612519 | 3.1:+77526460 | MS.gene06339:CDS |
| AGGATAATGAAGTCAATCCA+AGG | 0.614148 | 3.1:+77526964 | MS.gene06339:intron |
| ATTCAAGATGATGATGGTGA+TGG | 0.615253 | 3.1:+77526431 | MS.gene06339:CDS |
| GACTTGATAAAGTTCACAGA+TGG | 0.623810 | 3.1:+77525897 | MS.gene06339:CDS |
| AATCAGTATTCAACGCAAGA+CGG | 0.628758 | 3.1:+77528447 | MS.gene06339:intron |
| TTATGTACTTGAGATTGTTG+AGG | 0.636491 | 3.1:+77526067 | MS.gene06339:CDS |
| AAACACGATGGATCCCTCCA+TGG | 0.643689 | 3.1:-77528480 | None:intergenic |
| ACGGAGCGTTCATGCCATGG+AGG | 0.643935 | 3.1:+77528466 | MS.gene06339:CDS |
| GCAGGAGACGCAAAACTTTG+GGG | 0.646503 | 3.1:-77527472 | None:intergenic |
| GAATGATGTGAACGTGAATG+GGG | 0.654990 | 3.1:+77526352 | MS.gene06339:CDS |
| AGTCAATCCAAGGAAAGTGA+CGG | 0.655708 | 3.1:+77526974 | MS.gene06339:CDS |
| CGTGTGACTTCAAGGAAGGG+TGG | 0.659520 | 3.1:+77526185 | MS.gene06339:CDS |
| AGAAAATCTCACAGAGTACG+AGG | 0.663116 | 3.1:+77525995 | MS.gene06339:CDS |
| AGTCGTGTGACTTCAAGGAA+GGG | 0.667589 | 3.1:+77526182 | MS.gene06339:CDS |
| GGTAGGGGTAGGAAAATGAA+AGG | 0.668306 | 3.1:+77526206 | MS.gene06339:CDS |
| AATTAACAGGCCTTACTGCG+AGG | 0.686864 | 3.1:+77527022 | MS.gene06339:CDS |
| GGTAGTTCGTCCAAACACGA+TGG | 0.687379 | 3.1:-77528492 | None:intergenic |
| GAACCCTAGAAAGAGAACAT+GGG | 0.714054 | 3.1:+77525755 | MS.gene06339:CDS |
| TAATAATAAGAAAAGTGACG+TGG | 0.721249 | 3.1:+77526265 | MS.gene06339:CDS |
| GGTGTTAAGAACTCTAAACG+TGG | 0.725632 | 3.1:+77526149 | MS.gene06339:CDS |
| AAATCTCACAGAGTACGAGG+AGG | 0.742264 | 3.1:+77525998 | MS.gene06339:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAATGCAAAAATATTGTT+TGG | + | chr3.1:77528015-77528034 | MS.gene06339:intron | 15.0% |
| !! | AAAATTGTTACAAATAAACA+AGG | - | chr3.1:77528227-77528246 | None:intergenic | 15.0% |
| !! | AAATTGTTACAAATAAACAA+GGG | - | chr3.1:77528226-77528245 | None:intergenic | 15.0% |
| !! | AATATGTAGAAATTAAAGAT+AGG | - | chr3.1:77528124-77528143 | None:intergenic | 15.0% |
| !! | ATATGTAGAAATTAAAGATA+GGG | - | chr3.1:77528123-77528142 | None:intergenic | 15.0% |
| !! | ATATGTTTAATGTATACATA+TGG | + | chr3.1:77527237-77527256 | MS.gene06339:intron | 15.0% |
| !! | TAAAAGAAAAGATAAAATGT+TGG | - | chr3.1:77526539-77526558 | None:intergenic | 15.0% |
| !! | TAATATAAAATTTGTGAAGA+AGG | - | chr3.1:77525857-77525876 | None:intergenic | 15.0% |
| !! | TATACTTCAAATTATAATTC+CGG | - | chr3.1:77527972-77527991 | None:intergenic | 15.0% |
| !!! | TTTAATTTCTACATATTCAT+CGG | + | chr3.1:77528127-77528146 | MS.gene06339:intron | 15.0% |
| !! | ATTTCATTCTTAACAAGATT+AGG | + | chr3.1:77525799-77525818 | MS.gene06339:CDS | 20.0% |
| !! | TATGAGAATTGAAAATCTAT+TGG | + | chr3.1:77527937-77527956 | MS.gene06339:intron | 20.0% |
| !! | TATGTAGAAATTAAAGATAG+GGG | - | chr3.1:77528122-77528141 | None:intergenic | 20.0% |
| !! | TTTCATTCTTAACAAGATTA+GGG | + | chr3.1:77525800-77525819 | MS.gene06339:CDS | 20.0% |
| !!! | ACTTCAATCTCAATATTTTA+GGG | - | chr3.1:77526839-77526858 | None:intergenic | 20.0% |
| !!! | TATTAGTTTAGAATTAGACT+TGG | + | chr3.1:77528362-77528381 | MS.gene06339:intron | 20.0% |
| !!! | TTACATATAGACCTTTTTAT+TGG | + | chr3.1:77528082-77528101 | MS.gene06339:intron | 20.0% |
| !!! | TTCTTTTCTGGATTTTTTTT+TGG | - | chr3.1:77526335-77526354 | None:intergenic | 20.0% |
| ! | AAAATATTGAGATTGAAGTC+TGG | + | chr3.1:77526840-77526859 | MS.gene06339:intron | 25.0% |
| ! | AAATAATTACCACATATACG+TGG | - | chr3.1:77527800-77527819 | None:intergenic | 25.0% |
| ! | AACTCATGAAAGAAATTAAC+AGG | + | chr3.1:77527009-77527028 | MS.gene06339:CDS | 25.0% |
| ! | AATAATTACCACATATACGT+GGG | - | chr3.1:77527799-77527818 | None:intergenic | 25.0% |
| ! | ACGTATATGTGGTAATTATT+TGG | + | chr3.1:77527799-77527818 | MS.gene06339:intron | 25.0% |
| ! | ATCATCATGTTCAAAGAAAA+AGG | + | chr3.1:77526118-77526137 | MS.gene06339:CDS | 25.0% |
| ! | ATTAAACAACTGATCAAGAA+TGG | + | chr3.1:77527884-77527903 | MS.gene06339:intron | 25.0% |
| ! | CATAAGCATAGACAAATAAT+AGG | - | chr3.1:77527277-77527296 | None:intergenic | 25.0% |
| ! | GTATGCTATTACTAATTAAG+AGG | - | chr3.1:77527196-77527215 | None:intergenic | 25.0% |
| ! | GTTAGAAGTTAAAAACTTTC+AGG | - | chr3.1:77527642-77527661 | None:intergenic | 25.0% |
| ! | GTTCTTGTAATTTATATCGT+AGG | + | chr3.1:77528304-77528323 | MS.gene06339:intron | 25.0% |
| ! | TAATAATAAGAAAAGTGACG+TGG | + | chr3.1:77526265-77526284 | MS.gene06339:CDS | 25.0% |
| ! | TCAAATTATAATTCCGGAAT+TGG | - | chr3.1:77527966-77527985 | None:intergenic | 25.0% |
| ! | TCATCATGTTCAAAGAAAAA+GGG | + | chr3.1:77526119-77526138 | MS.gene06339:CDS | 25.0% |
| ! | TCTAAATTGAGTTCTACAAT+TGG | + | chr3.1:77527907-77527926 | MS.gene06339:intron | 25.0% |
| ! | TGAGATTGTATAATATTGGA+TGG | - | chr3.1:77525924-77525943 | None:intergenic | 25.0% |
| ! | TGATAAGATAACACAACATA+TGG | - | chr3.1:77528428-77528447 | None:intergenic | 25.0% |
| ! | TGTGATTGAGATAATTAATG+TGG | + | chr3.1:77526460-77526479 | MS.gene06339:CDS | 25.0% |
| !! | AAACTTTCAGGTGAATATAT+AGG | - | chr3.1:77527630-77527649 | None:intergenic | 25.0% |
| !! | CAAAATTTGCTCCAATAAAA+AGG | - | chr3.1:77528096-77528115 | None:intergenic | 25.0% |
| !! | GACTTCAATCTCAATATTTT+AGG | - | chr3.1:77526840-77526859 | None:intergenic | 25.0% |
| !! | TACTGTTTTCACTTTGAATT+TGG | + | chr3.1:77527303-77527322 | MS.gene06339:intron | 25.0% |
| !! | TAGAATTAGACTTGGTAATT+TGG | + | chr3.1:77528370-77528389 | MS.gene06339:intron | 25.0% |
| !! | TTTTACTGGATGTGTATATT+GGG | + | chr3.1:77528185-77528204 | MS.gene06339:intron | 25.0% |
| !! | TTTTTACTGGATGTGTATAT+TGG | + | chr3.1:77528184-77528203 | MS.gene06339:intron | 25.0% |
| !!! | AATTTGCCTTTGTACTTTTT+TGG | + | chr3.1:77526721-77526740 | MS.gene06339:intron | 25.0% |
| !!! | TAAGGATGAACTTTTTTGAT+AGG | + | chr3.1:77526944-77526963 | MS.gene06339:intron | 25.0% |
| !!! | TTTTTGAAAAATATGCGTGA+AGG | - | chr3.1:77527569-77527588 | None:intergenic | 25.0% |
| AAATTGAGTTCTACAATTGG+TGG | + | chr3.1:77527910-77527929 | MS.gene06339:intron | 30.0% | |
| AATGCTCTTAAAAGGAAAAG+AGG | + | chr3.1:77526305-77526324 | MS.gene06339:CDS | 30.0% | |
| ACAACATATGGATCAAAAAG+AGG | - | chr3.1:77528416-77528435 | None:intergenic | 30.0% | |
| ATTGCATGCTTGATAAAAGT+TGG | - | chr3.1:77526871-77526890 | None:intergenic | 30.0% | |
| CAACATATGGATCAAAAAGA+GGG | - | chr3.1:77528415-77528434 | None:intergenic | 30.0% | |
| CAGGTGAGATTGTATAATAT+TGG | - | chr3.1:77525928-77525947 | None:intergenic | 30.0% | |
| CTAGATCTTCGCTAATTTAT+TGG | + | chr3.1:77528248-77528267 | MS.gene06339:intron | 30.0% | |
| GATAATTAATGTGGAAAGCT+CGG | + | chr3.1:77526469-77526488 | MS.gene06339:CDS | 30.0% | |
| GATGATGTGTATGTGAAATT+TGG | + | chr3.1:77526089-77526108 | MS.gene06339:CDS | 30.0% | |
| GCTATTACTAATTAAGAGGA+TGG | - | chr3.1:77527192-77527211 | None:intergenic | 30.0% | |
| TCATGTTGTAGATCTTCTAA+AGG | + | chr3.1:77527424-77527443 | MS.gene06339:intron | 30.0% | |
| TTATGTACTTGAGATTGTTG+AGG | + | chr3.1:77526067-77526086 | MS.gene06339:CDS | 30.0% | |
| TTTACTGGATGTGTATATTG+GGG | + | chr3.1:77528186-77528205 | MS.gene06339:intron | 30.0% | |
| ! | ATGCAACAATTTTCCCAATT+GGG | + | chr3.1:77527353-77527372 | MS.gene06339:intron | 30.0% |
| ! | TCCAAACCAAAAAAGTACAA+AGG | - | chr3.1:77526730-77526749 | None:intergenic | 30.0% |
| ! | TCTTTTCTTGATCATCATCT+TGG | + | chr3.1:77527152-77527171 | MS.gene06339:CDS | 30.0% |
| !! | AGCTTTTCCTTTTGAGTATT+AGG | - | chr3.1:77525828-77525847 | None:intergenic | 30.0% |
| !! | CACAAAGTTCATGTTTTTAC+TGG | + | chr3.1:77528171-77528190 | MS.gene06339:intron | 30.0% |
| !! | GCTTTTCCTTTTGAGTATTA+GGG | - | chr3.1:77525827-77525846 | None:intergenic | 30.0% |
| AAAAATACAGAGATCTGCGT+GGG | + | chr3.1:77527093-77527112 | MS.gene06339:CDS | 35.0% | |
| AAAACTCTCTTGTAACTGTC+TGG | + | chr3.1:77527860-77527879 | MS.gene06339:intron | 35.0% | |
| AAGAATGATGTGAACGTGAA+TGG | + | chr3.1:77526350-77526369 | MS.gene06339:CDS | 35.0% | |
| AAGGAGATTCAAGATGATGA+TGG | + | chr3.1:77526425-77526444 | MS.gene06339:CDS | 35.0% | |
| AATCAGTATTCAACGCAAGA+CGG | + | chr3.1:77528447-77528466 | MS.gene06339:intron | 35.0% | |
| AATCCAAATTGGTACTTTGC+TGG | + | chr3.1:77526888-77526907 | MS.gene06339:intron | 35.0% | |
| AATCTATTGGAGTCCAATTC+CGG | + | chr3.1:77527950-77527969 | MS.gene06339:intron | 35.0% | |
| ACATCTCAAGATGTTTGTGT+TGG | + | chr3.1:77527662-77527681 | MS.gene06339:intron | 35.0% | |
| AGAATGATGTGAACGTGAAT+GGG | + | chr3.1:77526351-77526370 | MS.gene06339:CDS | 35.0% | |
| AGGATAATGAAGTCAATCCA+AGG | + | chr3.1:77526964-77526983 | MS.gene06339:intron | 35.0% | |
| ATCAAGCATGCAATCCAAAT+TGG | + | chr3.1:77526877-77526896 | MS.gene06339:intron | 35.0% | |
| ATCTTCAAAAACTTGCGTCA+TGG | + | chr3.1:77528339-77528358 | MS.gene06339:intron | 35.0% | |
| CACGTAGAAATGCTCTTAAA+AGG | + | chr3.1:77526297-77526316 | MS.gene06339:CDS | 35.0% | |
| CATCTCAAGATGTTTGTGTT+GGG | + | chr3.1:77527663-77527682 | MS.gene06339:intron | 35.0% | |
| GAACTTTATCAAGTCTGAGT+CGG | - | chr3.1:77525892-77525911 | None:intergenic | 35.0% | |
| GACTTGATAAAGTTCACAGA+TGG | + | chr3.1:77525897-77525916 | MS.gene06339:CDS | 35.0% | |
| GTAGAAATTAAAGATAGGGG+TGG | - | chr3.1:77528119-77528138 | None:intergenic | 35.0% | |
| TCAAAGAAAAAGGGTAAGCT+TGG | + | chr3.1:77526128-77526147 | MS.gene06339:CDS | 35.0% | |
| TCATCCTTAAGCAACACAAA+TGG | - | chr3.1:77526933-77526952 | None:intergenic | 35.0% | |
| TCATCTTGGTAAGTAGGATT+TGG | + | chr3.1:77527166-77527185 | MS.gene06339:intron | 35.0% | |
| TGATCATCATCTTGGTAAGT+AGG | + | chr3.1:77527160-77527179 | MS.gene06339:intron | 35.0% | |
| ! | AACAATTTTCCCAATTGGGT+TGG | + | chr3.1:77527357-77527376 | MS.gene06339:intron | 35.0% |
| ! | ACGTTCACATCATTCTTTTC+TGG | - | chr3.1:77526347-77526366 | None:intergenic | 35.0% |
| ! | AGACTTGGTAATTTGGTTAG+TGG | + | chr3.1:77528377-77528396 | MS.gene06339:intron | 35.0% |
| ! | GATGCAACAATTTTCCCAAT+TGG | + | chr3.1:77527352-77527371 | MS.gene06339:intron | 35.0% |
| ! | TGTCGATGAAAGTGTGAAAA+AGG | + | chr3.1:77526406-77526425 | MS.gene06339:CDS | 35.0% |
| ! | TTGAATCATTTGAAGCGTGA+TGG | + | chr3.1:77526038-77526057 | MS.gene06339:CDS | 35.0% |
| !! | ATTCAAGATGATGATGGTGA+TGG | + | chr3.1:77526431-77526450 | MS.gene06339:CDS | 35.0% |
| !! | TGCTAGAATTGAGAGTATCT+AGG | + | chr3.1:77527757-77527776 | MS.gene06339:intron | 35.0% |
| !!! | AGATCTCTGTATTTTTGGAC+CGG | - | chr3.1:77527089-77527108 | None:intergenic | 35.0% |
| !!! | CTGGTCGATTTTGTTTTTGT+TGG | + | chr3.1:77526907-77526926 | MS.gene06339:intron | 35.0% |
| !!! | GCCTTTGTACTTTTTTGGTT+TGG | + | chr3.1:77526726-77526745 | MS.gene06339:intron | 35.0% |
| AGAAAATCTCACAGAGTACG+AGG | + | chr3.1:77525995-77526014 | MS.gene06339:CDS | 40.0% | |
| AGAAATTAATGCTCGAACGC+CGG | + | chr3.1:77527067-77527086 | MS.gene06339:CDS | 40.0% | |
| AGTCAATCCAAGGAAAGTGA+CGG | + | chr3.1:77526974-77526993 | MS.gene06339:CDS | 40.0% | |
| CAAAAATACAGAGATCTGCG+TGG | + | chr3.1:77527092-77527111 | MS.gene06339:CDS | 40.0% | |
| CATTCACACAATCAGTGCAT+CGG | - | chr3.1:77526685-77526704 | None:intergenic | 40.0% | |
| CTTTGTGACACTTCTGATTC+TGG | - | chr3.1:77528158-77528177 | None:intergenic | 40.0% | |
| GAACCCTAGAAAGAGAACAT+GGG | + | chr3.1:77525755-77525774 | MS.gene06339:CDS | 40.0% | |
| GAATGATGTGAACGTGAATG+GGG | + | chr3.1:77526352-77526371 | MS.gene06339:CDS | 40.0% | |
| GATCCCATGTTCTCTTTCTA+GGG | - | chr3.1:77525761-77525780 | None:intergenic | 40.0% | |
| GATGTTTGTGTTGGGAAACA+TGG | + | chr3.1:77527671-77527690 | MS.gene06339:intron | 40.0% | |
| GGATCAAGATCTGAACCATT+TGG | - | chr3.1:77526649-77526668 | None:intergenic | 40.0% | |
| GGTGTTAAGAACTCTAAACG+TGG | + | chr3.1:77526149-77526168 | MS.gene06339:CDS | 40.0% | |
| TAGGGACCCTAATACTCAAA+AGG | + | chr3.1:77525818-77525837 | MS.gene06339:CDS | 40.0% | |
| TATCTGCTGCTAAGAAACGT+TGG | + | chr3.1:77526240-77526259 | MS.gene06339:CDS | 40.0% | |
| TCCATCATGATCTCCCTTAT+AGG | - | chr3.1:77527129-77527148 | None:intergenic | 40.0% | |
| TGAACCCTAGAAAGAGAACA+TGG | + | chr3.1:77525754-77525773 | MS.gene06339:CDS | 40.0% | |
| TGATCCCATGTTCTCTTTCT+AGG | - | chr3.1:77525762-77525781 | None:intergenic | 40.0% | |
| TTTGTTCCTGAAGATGAAGC+AGG | - | chr3.1:77525947-77525966 | None:intergenic | 40.0% | |
| ! | ATCAGTGCATCGGTAACTAT+TGG | - | chr3.1:77526675-77526694 | None:intergenic | 40.0% |
| ! | CACGCAGATCTCTGTATTTT+TGG | - | chr3.1:77527094-77527113 | None:intergenic | 40.0% |
| ! | GTTGCATCGCATTTTCAAAG+TGG | - | chr3.1:77527340-77527359 | None:intergenic | 40.0% |
| ! | TATGTGCCATTGTTCGAATG+CGG | + | chr3.1:77526566-77526585 | MS.gene06339:intron | 40.0% |
| ! | TGCATCGGTAACTATTGGAT+GGG | - | chr3.1:77526670-77526689 | None:intergenic | 40.0% |
| !! | TCTTTCTAGGGTTCACTGAA+GGG | - | chr3.1:77525749-77525768 | None:intergenic | 40.0% |
| !! | TTGGCCATTTGTGTTGCTTA+AGG | + | chr3.1:77526926-77526945 | MS.gene06339:intron | 40.0% |
| AAATCTCACAGAGTACGAGG+AGG | + | chr3.1:77525998-77526017 | MS.gene06339:CDS | 45.0% | |
| AAGCAACCGCATTCGAACAA+TGG | - | chr3.1:77526575-77526594 | None:intergenic | 45.0% | |
| AAGCGAGTATCCAACCCAAT+TGG | - | chr3.1:77527370-77527389 | None:intergenic | 45.0% | |
| AATTAACAGGCCTTACTGCG+AGG | + | chr3.1:77527022-77527041 | MS.gene06339:CDS | 45.0% | |
| ACCAAAAGAAAAATCCGCGC+AGG | - | chr3.1:77527493-77527512 | None:intergenic | 45.0% | |
| ACCATTTGGTCTCGATCCAA+CGG | - | chr3.1:77526635-77526654 | None:intergenic | 45.0% | |
| AGCGAGTATCCAACCCAATT+GGG | - | chr3.1:77527369-77527388 | None:intergenic | 45.0% | |
| AGTACGAGGAGGAACGAAAT+AGG | + | chr3.1:77526009-77526028 | MS.gene06339:CDS | 45.0% | |
| AGTCGTGTGACTTCAAGGAA+GGG | + | chr3.1:77526182-77526201 | MS.gene06339:CDS | 45.0% | |
| ATCTCACCTGCTTCATCTTC+AGG | + | chr3.1:77525938-77525957 | MS.gene06339:CDS | 45.0% | |
| GACTTAGTCGTGTGACTTCA+AGG | + | chr3.1:77526177-77526196 | MS.gene06339:CDS | 45.0% | |
| GAGTATCTAGGCATACGTCT+AGG | + | chr3.1:77527769-77527788 | MS.gene06339:intron | 45.0% | |
| GCCTATAAGGGAGATCATGA+TGG | + | chr3.1:77527125-77527144 | MS.gene06339:CDS | 45.0% | |
| GGGAGTAGCAAAGCCTATAA+GGG | + | chr3.1:77527113-77527132 | MS.gene06339:CDS | 45.0% | |
| GGTAGGGGTAGGAAAATGAA+AGG | + | chr3.1:77526206-77526225 | MS.gene06339:CDS | 45.0% | |
| TAGGTCAACCCACGTATATG+TGG | + | chr3.1:77527788-77527807 | MS.gene06339:intron | 45.0% | |
| TAGTCGTGTGACTTCAAGGA+AGG | + | chr3.1:77526181-77526200 | MS.gene06339:CDS | 45.0% | |
| TATGCACGCAGTTGGAACAT+CGG | + | chr3.1:77526769-77526788 | MS.gene06339:intron | 45.0% | |
| TCAAGTCATATGCACGCAGT+TGG | + | chr3.1:77526761-77526780 | MS.gene06339:intron | 45.0% | |
| TGGGAGTAGCAAAGCCTATA+AGG | + | chr3.1:77527112-77527131 | MS.gene06339:CDS | 45.0% | |
| TTATGCTCTTCCTCGCAGTA+AGG | - | chr3.1:77527035-77527054 | None:intergenic | 45.0% | |
| ! | CGACCAGCAAAGTACCAATT+TGG | - | chr3.1:77526894-77526913 | None:intergenic | 45.0% |
| ! | CTAAACTCCGTCACTTTCCT+TGG | - | chr3.1:77526984-77527003 | None:intergenic | 45.0% |
| ! | GTGCATCGGTAACTATTGGA+TGG | - | chr3.1:77526671-77526690 | None:intergenic | 45.0% |
| ! | TCCTGCGCGGATTTTTCTTT+TGG | + | chr3.1:77527489-77527508 | MS.gene06339:CDS | 45.0% |
| !! | ATCAAGTCTGAGTCGGCTTT+TGG | - | chr3.1:77525885-77525904 | None:intergenic | 45.0% |
| !! | CTCTTTCTAGGGTTCACTGA+AGG | - | chr3.1:77525750-77525769 | None:intergenic | 45.0% |
| !! | CTTTCTAGGGTTCACTGAAG+GGG | - | chr3.1:77525748-77525767 | None:intergenic | 45.0% |
| !! | TGCACTGATTGTGTGAATGC+CGG | + | chr3.1:77526686-77526705 | MS.gene06339:intron | 45.0% |
| !! | TTTCTAGGGTTCACTGAAGG+GGG | - | chr3.1:77525747-77525766 | None:intergenic | 45.0% |
| AAACACGATGGATCCCTCCA+TGG | - | chr3.1:77528483-77528502 | None:intergenic | 50.0% | |
| ACCGTTGGATCGAGACCAAA+TGG | + | chr3.1:77526631-77526650 | MS.gene06339:intron | 50.0% | |
| ACTGATTGTGTGAATGCCGG+GGG | + | chr3.1:77526689-77526708 | MS.gene06339:intron | 50.0% | |
| ACTTCAAGGAAGGGTGGTAG+GGG | + | chr3.1:77526191-77526210 | MS.gene06339:CDS | 50.0% | |
| ATGGAGGGATCCATCGTGTT+TGG | + | chr3.1:77528482-77528501 | MS.gene06339:CDS | 50.0% | |
| CGCAGGAGACGCAAAACTTT+GGG | - | chr3.1:77527476-77527495 | None:intergenic | 50.0% | |
| GACTTCAAGGAAGGGTGGTA+GGG | + | chr3.1:77526190-77526209 | MS.gene06339:CDS | 50.0% | |
| GCAGGAGACGCAAAACTTTG+GGG | - | chr3.1:77527475-77527494 | None:intergenic | 50.0% | |
| GGGAAACATGGCAAGAGCTA+GGG | + | chr3.1:77527683-77527702 | MS.gene06339:intron | 50.0% | |
| GGTAGTTCGTCCAAACACGA+TGG | - | chr3.1:77528495-77528514 | None:intergenic | 50.0% | |
| GTGAACGTGAATGGGGAAGA+AGG | + | chr3.1:77526359-77526378 | MS.gene06339:CDS | 50.0% | |
| TCGATCCAACGGTTACCGAT+GGG | - | chr3.1:77526624-77526643 | None:intergenic | 50.0% | |
| TGACTTCAAGGAAGGGTGGT+AGG | + | chr3.1:77526189-77526208 | MS.gene06339:CDS | 50.0% | |
| TGGGAAACATGGCAAGAGCT+AGG | + | chr3.1:77527682-77527701 | MS.gene06339:intron | 50.0% | |
| ! | AAAGTTTTGCGTCTCCTGCG+CGG | + | chr3.1:77527476-77527495 | MS.gene06339:CDS | 50.0% |
| ! | CACTGATTGTGTGAATGCCG+GGG | + | chr3.1:77526688-77526707 | MS.gene06339:intron | 50.0% |
| !! | GCACTGATTGTGTGAATGCC+GGG | + | chr3.1:77526687-77526706 | MS.gene06339:intron | 50.0% |
| ACTGCGTGCAAGTTACCGAC+TGG | - | chr3.1:77526598-77526617 | None:intergenic | 55.0% | |
| CGAATGCGGTTGCTTCCAGT+CGG | + | chr3.1:77526580-77526599 | MS.gene06339:intron | 55.0% | |
| CGTGTGACTTCAAGGAAGGG+TGG | + | chr3.1:77526185-77526204 | MS.gene06339:CDS | 55.0% | |
| CTCGATCCAACGGTTACCGA+TGG | - | chr3.1:77526625-77526644 | None:intergenic | 55.0% | |
| GCGCAGGAGACGCAAAACTT+TGG | - | chr3.1:77527477-77527496 | None:intergenic | 55.0% | |
| ! | AAGACGGAGCGTTCATGCCA+TGG | + | chr3.1:77528463-77528482 | MS.gene06339:CDS | 55.0% |
| CAAGGAAGGGTGGTAGGGGT+AGG | + | chr3.1:77526195-77526214 | MS.gene06339:CDS | 60.0% | |
| CACGCAGTTGGAACATCGGC+AGG | + | chr3.1:77526773-77526792 | MS.gene06339:intron | 60.0% | |
| CTTGCACGCAGTCAGCCCAT+CGG | + | chr3.1:77526606-77526625 | MS.gene06339:intron | 60.0% | |
| GCAAATTGCCTCAACGCCCC+CGG | - | chr3.1:77526708-77526727 | None:intergenic | 60.0% | |
| GTCAGCCCATCGGTAACCGT+TGG | + | chr3.1:77526616-77526635 | MS.gene06339:intron | 60.0% | |
| ! | ACGGAGCGTTCATGCCATGG+AGG | + | chr3.1:77528466-77528485 | MS.gene06339:CDS | 60.0% |
| ! | CGGAGCGTTCATGCCATGGA+GGG | + | chr3.1:77528467-77528486 | MS.gene06339:CDS | 60.0% |
| !! | TGTGAATGCCGGGGGCGTTG+AGG | + | chr3.1:77526697-77526716 | MS.gene06339:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.1 | gene | 77525738 | 77528524 | 77525738 | ID=MS.gene06339 |
| chr3.1 | mRNA | 77525738 | 77528524 | 77525738 | ID=MS.gene06339.t1;Parent=MS.gene06339 |
| chr3.1 | exon | 77525738 | 77526490 | 77525738 | ID=MS.gene06339.t1.exon1;Parent=MS.gene06339.t1 |
| chr3.1 | CDS | 77525738 | 77526490 | 77525738 | ID=cds.MS.gene06339.t1;Parent=MS.gene06339.t1 |
| chr3.1 | exon | 77526966 | 77527173 | 77526966 | ID=MS.gene06339.t1.exon2;Parent=MS.gene06339.t1 |
| chr3.1 | CDS | 77526966 | 77527173 | 77526966 | ID=cds.MS.gene06339.t1;Parent=MS.gene06339.t1 |
| chr3.1 | exon | 77527435 | 77527517 | 77527435 | ID=MS.gene06339.t1.exon3;Parent=MS.gene06339.t1 |
| chr3.1 | CDS | 77527435 | 77527517 | 77527435 | ID=cds.MS.gene06339.t1;Parent=MS.gene06339.t1 |
| chr3.1 | exon | 77528453 | 77528524 | 77528453 | ID=MS.gene06339.t1.exon4;Parent=MS.gene06339.t1 |
| chr3.1 | CDS | 77528453 | 77528524 | 77528453 | ID=cds.MS.gene06339.t1;Parent=MS.gene06339.t1 |
| Gene Sequence |
| Protein sequence |
