Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene064460.t1 | XP_013468154.1 | 95.8 | 336 | 11 | 1 | 1 | 336 | 1 | 333 | 6.10E-131 | 477.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene064460.t1 | Q9SJL2 | 48.3 | 172 | 82 | 1 | 30 | 201 | 53 | 217 | 3.7e-36 | 153.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene064460.t1 | A0A072VKN3 | 95.8 | 336 | 11 | 1 | 1 | 336 | 1 | 333 | 4.4e-131 | 477.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049159 | MS.gene064460 | 0.829201 | 5.88E-55 | -1.69E-46 |
| MS.gene050605 | MS.gene064460 | 0.802312 | 5.96E-49 | -1.69E-46 |
| MS.gene050844 | MS.gene064460 | 0.818315 | 2.09E-52 | -1.69E-46 |
| MS.gene050953 | MS.gene064460 | 0.805416 | 1.35E-49 | -1.69E-46 |
| MS.gene051349 | MS.gene064460 | 0.803162 | 3.98E-49 | -1.69E-46 |
| MS.gene051452 | MS.gene064460 | 0.938949 | 2.88E-99 | -1.69E-46 |
| MS.gene052426 | MS.gene064460 | 0.821496 | 3.91E-53 | -1.69E-46 |
| MS.gene052519 | MS.gene064460 | 0.802898 | 4.51E-49 | -1.69E-46 |
| MS.gene052863 | MS.gene064460 | 0.803028 | 4.24E-49 | -1.69E-46 |
| MS.gene05288 | MS.gene064460 | 0.808052 | 3.74E-50 | -1.69E-46 |
| MS.gene053006 | MS.gene064460 | 0.854335 | 1.32E-61 | -1.69E-46 |
| MS.gene053008 | MS.gene064460 | 0.845133 | 4.91E-59 | -1.69E-46 |
| MS.gene05415 | MS.gene064460 | 0.803312 | 3.70E-49 | -1.69E-46 |
| MS.gene054160 | MS.gene064460 | 0.828847 | 7.16E-55 | -1.69E-46 |
| MS.gene054236 | MS.gene064460 | 0.800198 | 1.61E-48 | -1.69E-46 |
| MS.gene054405 | MS.gene064460 | 0.800027 | 1.75E-48 | -1.69E-46 |
| MS.gene054657 | MS.gene064460 | 0.804197 | 2.42E-49 | -1.69E-46 |
| MS.gene05510 | MS.gene064460 | 0.841023 | 6.11E-58 | -1.69E-46 |
| MS.gene055623 | MS.gene064460 | 0.82878 | 7.43E-55 | -1.69E-46 |
| MS.gene055701 | MS.gene064460 | 0.835366 | 1.75E-56 | -1.69E-46 |
| MS.gene055818 | MS.gene064460 | 0.843111 | 1.71E-58 | -1.69E-46 |
| MS.gene057026 | MS.gene064460 | 0.810389 | 1.18E-50 | -1.69E-46 |
| MS.gene057194 | MS.gene064460 | 0.804446 | 2.15E-49 | -1.69E-46 |
| MS.gene057208 | MS.gene064460 | 0.804613 | 1.99E-49 | -1.69E-46 |
| MS.gene057693 | MS.gene064460 | 0.807844 | 4.14E-50 | -1.69E-46 |
| MS.gene058146 | MS.gene064460 | 0.814548 | 1.46E-51 | -1.69E-46 |
| MS.gene058595 | MS.gene064460 | 0.80664 | 7.46E-50 | -1.69E-46 |
| MS.gene058783 | MS.gene064460 | 0.804007 | 2.66E-49 | -1.69E-46 |
| MS.gene058979 | MS.gene064460 | 0.830841 | 2.34E-55 | -1.69E-46 |
| MS.gene05979 | MS.gene064460 | 0.800501 | 1.40E-48 | -1.69E-46 |
| MS.gene059842 | MS.gene064460 | 0.803899 | 2.80E-49 | -1.69E-46 |
| MS.gene060011 | MS.gene064460 | 0.830745 | 2.47E-55 | -1.69E-46 |
| MS.gene060310 | MS.gene064460 | 0.804874 | 1.75E-49 | -1.69E-46 |
| MS.gene060322 | MS.gene064460 | 0.834783 | 2.45E-56 | -1.69E-46 |
| MS.gene060683 | MS.gene064460 | 0.805624 | 1.22E-49 | -1.69E-46 |
| MS.gene060685 | MS.gene064460 | 0.815245 | 1.02E-51 | -1.69E-46 |
| MS.gene060998 | MS.gene064460 | 0.816172 | 6.34E-52 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene064460.t1 | MTR_1g063210 | 94.643 | 336 | 15 | 1 | 1 | 336 | 1 | 333 | 0.0 | 511 |
| MS.gene064460.t1 | MTR_7g101930 | 46.398 | 347 | 135 | 9 | 29 | 336 | 15 | 349 | 1.18e-75 | 236 |
| MS.gene064460.t1 | MTR_0041s0140 | 52.675 | 243 | 98 | 6 | 29 | 262 | 15 | 249 | 4.46e-60 | 193 |
| MS.gene064460.t1 | MTR_4g057765 | 39.414 | 307 | 135 | 3 | 30 | 336 | 69 | 324 | 5.43e-51 | 172 |
| MS.gene064460.t1 | MTR_2g095480 | 42.778 | 180 | 85 | 4 | 26 | 204 | 64 | 226 | 4.60e-37 | 136 |
| MS.gene064460.t1 | MTR_8g096700 | 40.556 | 180 | 94 | 2 | 25 | 203 | 49 | 216 | 5.58e-26 | 105 |
| MS.gene064460.t1 | MTR_5g069180 | 32.759 | 174 | 94 | 3 | 30 | 203 | 56 | 206 | 1.76e-22 | 96.3 |
| MS.gene064460.t1 | MTR_3g099030 | 32.571 | 175 | 101 | 2 | 29 | 202 | 36 | 194 | 6.18e-22 | 94.0 |
| MS.gene064460.t1 | MTR_3g435930 | 30.808 | 198 | 112 | 3 | 29 | 224 | 28 | 202 | 8.68e-22 | 92.8 |
| MS.gene064460.t1 | MTR_2g026685 | 33.520 | 179 | 104 | 2 | 26 | 203 | 32 | 196 | 5.37e-21 | 91.3 |
| MS.gene064460.t1 | MTR_2g026685 | 33.520 | 179 | 104 | 2 | 26 | 203 | 33 | 197 | 5.46e-21 | 91.3 |
| MS.gene064460.t1 | MTR_8g010540 | 26.144 | 306 | 153 | 7 | 30 | 335 | 32 | 264 | 2.41e-20 | 89.4 |
| MS.gene064460.t1 | MTR_3g093020 | 27.160 | 324 | 147 | 8 | 26 | 335 | 35 | 283 | 2.91e-20 | 89.4 |
| MS.gene064460.t1 | MTR_3g099040 | 30.114 | 176 | 107 | 2 | 29 | 203 | 36 | 196 | 1.72e-19 | 87.8 |
| MS.gene064460.t1 | MTR_2g026685 | 32.941 | 170 | 99 | 2 | 35 | 203 | 1 | 156 | 2.25e-18 | 83.2 |
| MS.gene064460.t1 | MTR_4g006650 | 34.328 | 134 | 72 | 2 | 29 | 161 | 169 | 287 | 7.27e-11 | 62.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene064460.t1 | AT5G03380 | 39.801 | 402 | 166 | 12 | 1 | 336 | 1 | 392 | 9.35e-60 | 197 |
| MS.gene064460.t1 | AT5G03380 | 40.162 | 371 | 149 | 11 | 32 | 336 | 2 | 365 | 1.99e-57 | 190 |
| MS.gene064460.t1 | AT5G03380 | 42.391 | 92 | 47 | 2 | 142 | 229 | 1 | 90 | 3.76e-11 | 63.9 |
| MS.gene064460.t1 | AT2G36950 | 41.713 | 362 | 128 | 13 | 30 | 336 | 53 | 386 | 1.34e-54 | 183 |
| MS.gene064460.t1 | AT2G28090 | 40.722 | 194 | 95 | 3 | 12 | 204 | 14 | 188 | 2.14e-30 | 116 |
| MS.gene064460.t1 | AT3G02960 | 32.386 | 176 | 96 | 4 | 29 | 203 | 38 | 191 | 8.37e-27 | 106 |
| MS.gene064460.t1 | AT1G29000 | 32.597 | 181 | 109 | 1 | 30 | 210 | 18 | 185 | 2.90e-21 | 92.4 |
| MS.gene064460.t1 | AT1G29000 | 32.597 | 181 | 109 | 1 | 30 | 210 | 18 | 185 | 2.90e-21 | 92.4 |
| MS.gene064460.t1 | AT5G24580 | 28.571 | 175 | 103 | 1 | 30 | 204 | 59 | 211 | 4.58e-19 | 86.7 |
| MS.gene064460.t1 | AT5G24580 | 28.571 | 175 | 103 | 1 | 30 | 204 | 59 | 211 | 4.58e-19 | 86.7 |
| MS.gene064460.t1 | AT5G24580 | 28.571 | 175 | 103 | 1 | 30 | 204 | 58 | 210 | 4.61e-19 | 86.7 |
| MS.gene064460.t1 | AT5G50740 | 38.686 | 137 | 68 | 2 | 29 | 164 | 29 | 150 | 4.28e-16 | 75.1 |
| MS.gene064460.t1 | AT5G50740 | 38.686 | 137 | 68 | 2 | 29 | 164 | 36 | 157 | 5.42e-16 | 75.1 |
| MS.gene064460.t1 | AT5G24580 | 26.857 | 175 | 103 | 2 | 30 | 204 | 59 | 208 | 7.52e-16 | 77.4 |
Find 69 sgRNAs with CRISPR-Local
Find 100 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATCTGAGGAGGTGGATTATT+AGG | 0.166312 | 1.4:-51990140 | None:intergenic |
| AGAATCATTATGAAGTTTAA+AGG | 0.204173 | 1.4:+51989515 | MS.gene064460:CDS |
| AATTAATTAATTACCTCTTT+AGG | 0.237111 | 1.4:-51989355 | None:intergenic |
| CGTTAAATTGCAAGAGAAAT+TGG | 0.249649 | 1.4:+51989174 | MS.gene064460:CDS |
| CAACATTATATGGAGAATAA+TGG | 0.281211 | 1.4:+51990050 | MS.gene064460:CDS |
| TAATAATAATCAACATTATA+TGG | 0.312578 | 1.4:+51990040 | MS.gene064460:CDS |
| CAATTTCTCTTGCAATTTAA+CGG | 0.317272 | 1.4:-51989173 | None:intergenic |
| TCCTTCATCAGCTTTCTTCT+CGG | 0.317840 | 1.4:-51988886 | None:intergenic |
| AACATTATATGGAGAATAAT+GGG | 0.379007 | 1.4:+51990051 | MS.gene064460:CDS |
| GAAGGTGGAGGTTAATAAAA+TGG | 0.389488 | 1.4:+51989911 | MS.gene064460:CDS |
| TCCTCAGCTTTCTTCTCCTC+CGG | 0.392060 | 1.4:-51989295 | None:intergenic |
| TGAAGCTAGATCTGCTTTAA+CGG | 0.396241 | 1.4:-51989119 | None:intergenic |
| AGATACTCTATCAAATCCTT+TGG | 0.402024 | 1.4:-51989744 | None:intergenic |
| TCAAACAAAGTGACAGTTAC+CGG | 0.410265 | 1.4:+51989139 | MS.gene064460:CDS |
| CCAAATCCTTGTCTCCATCT+AGG | 0.412236 | 1.4:-51989698 | None:intergenic |
| AGACGCCGGAGCCGAGAAAC+CGG | 0.413190 | 1.4:+51989246 | MS.gene064460:CDS |
| GTTGAAACGGCGAACCTAGA+TGG | 0.423969 | 1.4:+51989684 | MS.gene064460:CDS |
| CCTAGATGGAGACAAGGATT+TGG | 0.435138 | 1.4:+51989698 | MS.gene064460:CDS |
| TCTGAGGAGGTGGATTATTA+GGG | 0.436820 | 1.4:-51990139 | None:intergenic |
| CGGTGGAGATGCGGCGAAGG+TGG | 0.453941 | 1.4:+51989896 | MS.gene064460:CDS |
| TTTAACGGCGTCAAATTTAC+CGG | 0.454292 | 1.4:-51989158 | None:intergenic |
| CTCCGCCGGTTTCTCGGCTC+CGG | 0.455657 | 1.4:-51989251 | None:intergenic |
| AAGTCGAGTTTGTAAACAAC+AGG | 0.458834 | 1.4:-51988945 | None:intergenic |
| TGAAAAGAAAGAGAAAGAAA+AGG | 0.465817 | 1.4:+51989845 | MS.gene064460:CDS |
| ACAGGAGCAGGAGCAGGAAC+AGG | 0.469773 | 1.4:-51988927 | None:intergenic |
| AAGTAGTAACTATGCTGGTA+TGG | 0.497316 | 1.4:+51989980 | MS.gene064460:CDS |
| GAAGAAAGAAGAGAAGAAAG+TGG | 0.498576 | 1.4:+51989872 | MS.gene064460:CDS |
| CACATAAGAGAACAAGCATT+GGG | 0.508286 | 1.4:-51990179 | None:intergenic |
| GCTCCGATGTATTATTATGA+AGG | 0.510924 | 1.4:+51989954 | MS.gene064460:CDS |
| TGGAGATGCGGCGAAGGTGG+AGG | 0.511085 | 1.4:+51989899 | MS.gene064460:CDS |
| TTTCATCATCAACCTGGGTA+TGG | 0.520569 | 1.4:+51990008 | MS.gene064460:CDS |
| TCACTGAACATCTGAGGAGG+TGG | 0.529922 | 1.4:-51990149 | None:intergenic |
| TTATTAGGGTGCATGTAATA+CGG | 0.531642 | 1.4:-51990125 | None:intergenic |
| ACCGAGAAGAAAGCTGATGA+AGG | 0.540526 | 1.4:+51988885 | MS.gene064460:CDS |
| GGTACTTGAGGTGGCTGCAT+AGG | 0.542416 | 1.4:-51990104 | None:intergenic |
| TTATTAAACAGGAGTTGAAA+CGG | 0.544576 | 1.4:+51989671 | MS.gene064460:intron |
| CATCAACCTGGGTATGGTGG+TGG | 0.547203 | 1.4:+51990014 | MS.gene064460:CDS |
| AAAGAAAGAGAAAGAAAAGG+CGG | 0.548738 | 1.4:+51989848 | MS.gene064460:CDS |
| CGAAGTGCTCGTCATTTCGC+TGG | 0.552259 | 1.4:+51988999 | MS.gene064460:CDS |
| AGTTTGTAAACAACAGGAGC+AGG | 0.553378 | 1.4:-51988939 | None:intergenic |
| GGTCAAAGTAGTAACTATGC+TGG | 0.556121 | 1.4:+51989975 | MS.gene064460:CDS |
| AAGGATTTGGTAACAGTGAA+AGG | 0.556405 | 1.4:+51989711 | MS.gene064460:CDS |
| GGACGGTGGAGATGCGGCGA+AGG | 0.557262 | 1.4:+51989893 | MS.gene064460:CDS |
| TCACATAAGAGAACAAGCAT+TGG | 0.558548 | 1.4:-51990180 | None:intergenic |
| GATCAATTTCATCATCAACC+TGG | 0.560641 | 1.4:+51990002 | MS.gene064460:CDS |
| TAAACAACAGGAGCAGGAGC+AGG | 0.567749 | 1.4:-51988933 | None:intergenic |
| TAATACATCGGAGCTTGTAT+CGG | 0.568277 | 1.4:-51989945 | None:intergenic |
| GAAGAGAAGAAAGTGGACGG+TGG | 0.569092 | 1.4:+51989879 | MS.gene064460:CDS |
| GAAAGTGGACGGTGGAGATG+CGG | 0.575166 | 1.4:+51989887 | MS.gene064460:CDS |
| CATCATCAACCTGGGTATGG+TGG | 0.581791 | 1.4:+51990011 | MS.gene064460:CDS |
| GAAAGGAACAATGGAACCAA+AGG | 0.586961 | 1.4:+51989728 | MS.gene064460:CDS |
| AAAGAAGAGAAGAAAGTGGA+CGG | 0.599132 | 1.4:+51989876 | MS.gene064460:CDS |
| ATCAATTTCATCATCAACCT+GGG | 0.600796 | 1.4:+51990003 | MS.gene064460:CDS |
| GGGTATATGAATATGAATCA+TGG | 0.602668 | 1.4:+51990071 | MS.gene064460:CDS |
| GGTAACAGTGAAAGGAACAA+TGG | 0.605375 | 1.4:+51989719 | MS.gene064460:CDS |
| CGCCGGAGCCGAGAAACCGG+CGG | 0.606076 | 1.4:+51989249 | MS.gene064460:CDS |
| ACCAATCACACACATGGGAG+AGG | 0.606723 | 1.4:+51988702 | None:intergenic |
| ATGAATATGAATCATGGTGG+TGG | 0.613279 | 1.4:+51990077 | MS.gene064460:CDS |
| TGCATGTAATACGGTACTTG+AGG | 0.613430 | 1.4:-51990116 | None:intergenic |
| TTCTCATCACTGAACATCTG+AGG | 0.619062 | 1.4:-51990155 | None:intergenic |
| AAACTCGACTTACATTGTGA+AGG | 0.624408 | 1.4:+51988957 | MS.gene064460:CDS |
| TGACCTTCATAATAATACAT+CGG | 0.624646 | 1.4:-51989957 | None:intergenic |
| TTATAACCACCACCATACCC+AGG | 0.654821 | 1.4:-51990020 | None:intergenic |
| TCATCACTGAACATCTGAGG+AGG | 0.657828 | 1.4:-51990152 | None:intergenic |
| ATGTAATACGGTACTTGAGG+TGG | 0.661458 | 1.4:-51990113 | None:intergenic |
| ACCGGAGGAGAAGAAAGCTG+AGG | 0.672813 | 1.4:+51989294 | MS.gene064460:CDS |
| AAGATCAGATTGCACTGTGA+CGG | 0.678394 | 1.4:+51989473 | MS.gene064460:CDS |
| GGCGAACCTAGATGGAGACA+AGG | 0.682048 | 1.4:+51989692 | MS.gene064460:CDS |
| TATATGAATATGAATCATGG+TGG | 0.739870 | 1.4:+51990074 | MS.gene064460:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATTTAATTAATACAAAGT+CGG | - | chr1.4:51989418-51989437 | None:intergenic | 10.0% |
| !! | TAATAATAATCAACATTATA+TGG | + | chr1.4:51990040-51990059 | MS.gene064460:CDS | 10.0% |
| !! | AATTAATTAATTACCTCTTT+AGG | - | chr1.4:51989358-51989377 | None:intergenic | 15.0% |
| !! | AGAATATTCATTAACAAATT+TGG | + | chr1.4:51989076-51989095 | MS.gene064460:intron | 15.0% |
| !! | ATATACTAATACTAATGAAA+AGG | - | chr1.4:51988746-51988765 | None:intergenic | 15.0% |
| !!! | ATTTATTAATTTTCAGAGTA+CGG | + | chr1.4:51989442-51989461 | MS.gene064460:intron | 15.0% |
| !!! | GGTTATTTTATTTGAAATTT+AGG | - | chr1.4:51989551-51989570 | None:intergenic | 15.0% |
| !! | AACATTATATGGAGAATAAT+GGG | + | chr1.4:51990051-51990070 | MS.gene064460:CDS | 20.0% |
| !! | AGAATCATTATGAAGTTTAA+AGG | + | chr1.4:51989515-51989534 | MS.gene064460:CDS | 20.0% |
| !!! | AACAAATTTGGAATATATTC+AGG | + | chr1.4:51989088-51989107 | MS.gene064460:intron | 20.0% |
| ! | AATAGCATATTCAATATTCC+TGG | + | chr1.4:51988778-51988797 | MS.gene064460:intron | 25.0% |
| ! | ACACAAAAAGAAAATATTCC+AGG | - | chr1.4:51988799-51988818 | None:intergenic | 25.0% |
| ! | AGGAATATTGAATATGCTAT+TGG | - | chr1.4:51988779-51988798 | None:intergenic | 25.0% |
| ! | CAACATTATATGGAGAATAA+TGG | + | chr1.4:51990050-51990069 | MS.gene064460:CDS | 25.0% |
| ! | CAATTTCTCTTGCAATTTAA+CGG | - | chr1.4:51989176-51989195 | None:intergenic | 25.0% |
| ! | TATATGAATATGAATCATGG+TGG | + | chr1.4:51990074-51990093 | MS.gene064460:CDS | 25.0% |
| ! | TGAAAAGAAAGAGAAAGAAA+AGG | + | chr1.4:51989845-51989864 | MS.gene064460:CDS | 25.0% |
| ! | TGACCTTCATAATAATACAT+CGG | - | chr1.4:51989960-51989979 | None:intergenic | 25.0% |
| ! | TTATTAAACAGGAGTTGAAA+CGG | + | chr1.4:51989671-51989690 | MS.gene064460:intron | 25.0% |
| !! | TGATGATGATGTTATTAAAC+AGG | + | chr1.4:51989660-51989679 | MS.gene064460:intron | 25.0% |
| !!! | TTCTTCTCTTCTTCTTTTTT+AGG | - | chr1.4:51989807-51989826 | None:intergenic | 25.0% |
| AAAGAAAGAGAAAGAAAAGG+CGG | + | chr1.4:51989848-51989867 | MS.gene064460:CDS | 30.0% | |
| AGAAGAGAAGAAAGAAAAAG+AGG | + | chr1.4:51989815-51989834 | MS.gene064460:CDS | 30.0% | |
| AGATACTCTATCAAATCCTT+TGG | - | chr1.4:51989747-51989766 | None:intergenic | 30.0% | |
| ATCAATTTCATCATCAACCT+GGG | + | chr1.4:51990003-51990022 | MS.gene064460:CDS | 30.0% | |
| CGTTAAATTGCAAGAGAAAT+TGG | + | chr1.4:51989174-51989193 | MS.gene064460:CDS | 30.0% | |
| GAAGAGAAGAAAGAAAAAGA+GGG | + | chr1.4:51989816-51989835 | MS.gene064460:CDS | 30.0% | |
| GGGTATATGAATATGAATCA+TGG | + | chr1.4:51990071-51990090 | MS.gene064460:CDS | 30.0% | |
| TGAAGAGAAAAAACCTAAAG+AGG | + | chr1.4:51989342-51989361 | MS.gene064460:CDS | 30.0% | |
| TTATTAGGGTGCATGTAATA+CGG | - | chr1.4:51990128-51990147 | None:intergenic | 30.0% | |
| ! | TATTAATTTTCAGAGTACGG+TGG | + | chr1.4:51989445-51989464 | MS.gene064460:intron | 30.0% |
| !!! | TCTTTAGGTTTTTTCTCTTC+AGG | - | chr1.4:51989343-51989362 | None:intergenic | 30.0% |
| !!! | TTCTCTTCTTCTTTTTTAGG+TGG | - | chr1.4:51989804-51989823 | None:intergenic | 30.0% |
| AAAATCCGACGAGAAAAAAC+CGG | + | chr1.4:51989276-51989295 | MS.gene064460:CDS | 35.0% | |
| AAACTCGACTTACATTGTGA+AGG | + | chr1.4:51988957-51988976 | MS.gene064460:CDS | 35.0% | |
| AAAGAAGAGAAGAAAGTGGA+CGG | + | chr1.4:51989876-51989895 | MS.gene064460:CDS | 35.0% | |
| AAGTAGTAACTATGCTGGTA+TGG | + | chr1.4:51989980-51989999 | MS.gene064460:CDS | 35.0% | |
| AAGTCGAGTTTGTAAACAAC+AGG | - | chr1.4:51988948-51988967 | None:intergenic | 35.0% | |
| ATGAATATGAATCATGGTGG+TGG | + | chr1.4:51990077-51990096 | MS.gene064460:CDS | 35.0% | |
| CACATAAGAGAACAAGCATT+GGG | - | chr1.4:51990182-51990201 | None:intergenic | 35.0% | |
| GAAGAAAGAAGAGAAGAAAG+TGG | + | chr1.4:51989872-51989891 | MS.gene064460:CDS | 35.0% | |
| GAAGGTGGAGGTTAATAAAA+TGG | + | chr1.4:51989911-51989930 | MS.gene064460:CDS | 35.0% | |
| GATCAATTTCATCATCAACC+TGG | + | chr1.4:51990002-51990021 | MS.gene064460:CDS | 35.0% | |
| GCTCCGATGTATTATTATGA+AGG | + | chr1.4:51989954-51989973 | MS.gene064460:CDS | 35.0% | |
| TAATACATCGGAGCTTGTAT+CGG | - | chr1.4:51989948-51989967 | None:intergenic | 35.0% | |
| TCAAACAAAGTGACAGTTAC+CGG | + | chr1.4:51989139-51989158 | MS.gene064460:CDS | 35.0% | |
| TCACATAAGAGAACAAGCAT+TGG | - | chr1.4:51990183-51990202 | None:intergenic | 35.0% | |
| TGAAGCTAGATCTGCTTTAA+CGG | - | chr1.4:51989122-51989141 | None:intergenic | 35.0% | |
| TTTAACGGCGTCAAATTTAC+CGG | - | chr1.4:51989161-51989180 | None:intergenic | 35.0% | |
| ! | AAGGATTTGGTAACAGTGAA+AGG | + | chr1.4:51989711-51989730 | MS.gene064460:CDS | 35.0% |
| !!! | TCTTCAGGTTTTTTCTCTTC+AGG | - | chr1.4:51989328-51989347 | None:intergenic | 35.0% |
| AAGAAAGAAAAAGAGGGTGG+AGG | + | chr1.4:51989822-51989841 | MS.gene064460:CDS | 40.0% | |
| AAGATCAGATTGCACTGTGA+CGG | + | chr1.4:51989473-51989492 | MS.gene064460:CDS | 40.0% | |
| AGTTTGTAAACAACAGGAGC+AGG | - | chr1.4:51988942-51988961 | None:intergenic | 40.0% | |
| ATGTAATACGGTACTTGAGG+TGG | - | chr1.4:51990116-51990135 | None:intergenic | 40.0% | |
| GAAAGGAACAATGGAACCAA+AGG | + | chr1.4:51989728-51989747 | MS.gene064460:CDS | 40.0% | |
| GAGAAGAAAGAAAAAGAGGG+TGG | + | chr1.4:51989819-51989838 | MS.gene064460:CDS | 40.0% | |
| GGCTGAAAAAGCTAAGAAGA+AGG | + | chr1.4:51989195-51989214 | MS.gene064460:CDS | 40.0% | |
| GGTAACAGTGAAAGGAACAA+TGG | + | chr1.4:51989719-51989738 | MS.gene064460:CDS | 40.0% | |
| GGTCAAAGTAGTAACTATGC+TGG | + | chr1.4:51989975-51989994 | MS.gene064460:CDS | 40.0% | |
| TCCTTCATCAGCTTTCTTCT+CGG | - | chr1.4:51988889-51988908 | None:intergenic | 40.0% | |
| TGCATGTAATACGGTACTTG+AGG | - | chr1.4:51990119-51990138 | None:intergenic | 40.0% | |
| TTCTCATCACTGAACATCTG+AGG | - | chr1.4:51990158-51990177 | None:intergenic | 40.0% | |
| TTTCATCATCAACCTGGGTA+TGG | + | chr1.4:51990008-51990027 | MS.gene064460:CDS | 40.0% | |
| !! | ATCTGAGGAGGTGGATTATT+AGG | - | chr1.4:51990143-51990162 | None:intergenic | 40.0% |
| !! | TCTGAGGAGGTGGATTATTA+GGG | - | chr1.4:51990142-51990161 | None:intergenic | 40.0% |
| ACCGAGAAGAAAGCTGATGA+AGG | + | chr1.4:51988885-51988904 | MS.gene064460:CDS | 45.0% | |
| CCAAATCCTTGTCTCCATCT+AGG | - | chr1.4:51989701-51989720 | None:intergenic | 45.0% | |
| CCTAGATGGAGACAAGGATT+TGG | + | chr1.4:51989698-51989717 | MS.gene064460:CDS | 45.0% | |
| TCATCACTGAACATCTGAGG+AGG | - | chr1.4:51990155-51990174 | None:intergenic | 45.0% | |
| TTATAACCACCACCATACCC+AGG | - | chr1.4:51990023-51990042 | None:intergenic | 45.0% | |
| !!! | TTTTTTCTCCGCCGGTTTCT+CGG | - | chr1.4:51989260-51989279 | None:intergenic | 45.0% |
| !! | TAATTAATTAATTGTTAATT+TGG | + | chr1.4:51989627-51989646 | MS.gene064460:intron | 5.0% |
| !!! | TTTTAAAATATTAATGAATT+AGG | - | chr1.4:51989572-51989591 | None:intergenic | 5.0% |
| ATCCGACGAGAAAAAACCGG+AGG | + | chr1.4:51989279-51989298 | MS.gene064460:CDS | 50.0% | |
| CATCATCAACCTGGGTATGG+TGG | + | chr1.4:51990011-51990030 | MS.gene064460:CDS | 50.0% | |
| GAAGAGAAGAAAGTGGACGG+TGG | + | chr1.4:51989879-51989898 | MS.gene064460:CDS | 50.0% | |
| GTTGAAACGGCGAACCTAGA+TGG | + | chr1.4:51989684-51989703 | MS.gene064460:CDS | 50.0% | |
| TAAACAACAGGAGCAGGAGC+AGG | - | chr1.4:51988936-51988955 | None:intergenic | 50.0% | |
| TCACTGAACATCTGAGGAGG+TGG | - | chr1.4:51990152-51990171 | None:intergenic | 50.0% | |
| TCCTCAGCTTTCTTCTCCTC+CGG | - | chr1.4:51989298-51989317 | None:intergenic | 50.0% | |
| !!! | CTCCTCCGGTTTTTTCTCGT+CGG | - | chr1.4:51989284-51989303 | None:intergenic | 50.0% |
| !!! | TCGTCGGATTTTTTCTCCGC+CGG | - | chr1.4:51989268-51989287 | None:intergenic | 50.0% |
| ACCGGAGGAGAAGAAAGCTG+AGG | + | chr1.4:51989294-51989313 | MS.gene064460:CDS | 55.0% | |
| CATCAACCTGGGTATGGTGG+TGG | + | chr1.4:51990014-51990033 | MS.gene064460:CDS | 55.0% | |
| CCACCGCCAAAAAAAGACGC+CGG | + | chr1.4:51989232-51989251 | MS.gene064460:CDS | 55.0% | |
| GAAAGTGGACGGTGGAGATG+CGG | + | chr1.4:51989887-51989906 | MS.gene064460:CDS | 55.0% | |
| GGCGAACCTAGATGGAGACA+AGG | + | chr1.4:51989692-51989711 | MS.gene064460:CDS | 55.0% | |
| GGTACTTGAGGTGGCTGCAT+AGG | - | chr1.4:51990107-51990126 | None:intergenic | 55.0% | |
| ! | CGAAGTGCTCGTCATTTCGC+TGG | + | chr1.4:51988999-51989018 | MS.gene064460:CDS | 55.0% |
| !!! | GCTCCGGCGTCTTTTTTTGG+CGG | - | chr1.4:51989238-51989257 | None:intergenic | 55.0% |
| !!! | TCGGCTCCGGCGTCTTTTTT+TGG | - | chr1.4:51989241-51989260 | None:intergenic | 55.0% |
| ACAGGAGCAGGAGCAGGAAC+AGG | - | chr1.4:51988930-51988949 | None:intergenic | 60.0% | |
| !!! | CCGGCGTCTTTTTTTGGCGG+TGG | - | chr1.4:51989235-51989254 | None:intergenic | 60.0% |
| AGACGCCGGAGCCGAGAAAC+CGG | + | chr1.4:51989246-51989265 | MS.gene064460:CDS | 65.0% | |
| TGGAGATGCGGCGAAGGTGG+AGG | + | chr1.4:51989899-51989918 | MS.gene064460:CDS | 65.0% | |
| CGGTGGAGATGCGGCGAAGG+TGG | + | chr1.4:51989896-51989915 | MS.gene064460:CDS | 70.0% | |
| GGACGGTGGAGATGCGGCGA+AGG | + | chr1.4:51989893-51989912 | MS.gene064460:CDS | 70.0% | |
| !! | CTCCGCCGGTTTCTCGGCTC+CGG | - | chr1.4:51989254-51989273 | None:intergenic | 70.0% |
| CGCCGGAGCCGAGAAACCGG+CGG | + | chr1.4:51989249-51989268 | MS.gene064460:CDS | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.4 | gene | 51988715 | 51990202 | 51988715 | ID=MS.gene064460 |
| chr1.4 | mRNA | 51988715 | 51990202 | 51988715 | ID=MS.gene064460.t1;Parent=MS.gene064460 |
| chr1.4 | exon | 51988715 | 51988723 | 51988715 | ID=MS.gene064460.t1.exon1;Parent=MS.gene064460.t1 |
| chr1.4 | CDS | 51988715 | 51988723 | 51988715 | ID=cds.MS.gene064460.t1;Parent=MS.gene064460.t1 |
| chr1.4 | exon | 51988873 | 51989020 | 51988873 | ID=MS.gene064460.t1.exon2;Parent=MS.gene064460.t1 |
| chr1.4 | CDS | 51988873 | 51989020 | 51988873 | ID=cds.MS.gene064460.t1;Parent=MS.gene064460.t1 |
| chr1.4 | exon | 51989110 | 51989363 | 51989110 | ID=MS.gene064460.t1.exon3;Parent=MS.gene064460.t1 |
| chr1.4 | CDS | 51989110 | 51989363 | 51989110 | ID=cds.MS.gene064460.t1;Parent=MS.gene064460.t1 |
| chr1.4 | exon | 51989458 | 51989536 | 51989458 | ID=MS.gene064460.t1.exon4;Parent=MS.gene064460.t1 |
| chr1.4 | CDS | 51989458 | 51989536 | 51989458 | ID=cds.MS.gene064460.t1;Parent=MS.gene064460.t1 |
| chr1.4 | exon | 51989682 | 51990202 | 51989682 | ID=MS.gene064460.t1.exon5;Parent=MS.gene064460.t1 |
| chr1.4 | CDS | 51989682 | 51990202 | 51989682 | ID=cds.MS.gene064460.t1;Parent=MS.gene064460.t1 |
| Gene Sequence |
| Protein sequence |
