Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene067366.t1 | XP_013443470.1 | 98 | 346 | 7 | 0 | 12 | 357 | 1 | 346 | 7.20E-191 | 676.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene067366.t1 | Q9SLN8 | 48.1 | 345 | 174 | 2 | 13 | 357 | 4 | 343 | 8.3e-95 | 348.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene067366.t1 | A0A072TVD7 | 98.0 | 346 | 7 | 0 | 12 | 357 | 1 | 346 | 5.2e-191 | 676.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049134 | MS.gene067366 | -0.818415 | 1.98E-52 | -1.69E-46 |
| MS.gene049150 | MS.gene067366 | 0.812884 | 3.39E-51 | -1.69E-46 |
| MS.gene049153 | MS.gene067366 | 0.815876 | 7.38E-52 | -1.69E-46 |
| MS.gene04933 | MS.gene067366 | 0.804354 | 2.25E-49 | -1.69E-46 |
| MS.gene050301 | MS.gene067366 | 0.805854 | 1.09E-49 | -1.69E-46 |
| MS.gene050558 | MS.gene067366 | 0.832905 | 7.24E-56 | -1.69E-46 |
| MS.gene050560 | MS.gene067366 | 0.830288 | 3.19E-55 | -1.69E-46 |
| MS.gene050787 | MS.gene067366 | 0.851575 | 8.12E-61 | -1.69E-46 |
| MS.gene051525 | MS.gene067366 | 0.813178 | 2.92E-51 | -1.69E-46 |
| MS.gene051568 | MS.gene067366 | 0.80063 | 1.32E-48 | -1.69E-46 |
| MS.gene051860 | MS.gene067366 | 0.854748 | 1.00E-61 | -1.69E-46 |
| MS.gene052011 | MS.gene067366 | -0.856914 | 2.33E-62 | -1.69E-46 |
| MS.gene052207 | MS.gene067366 | 0.824056 | 9.93E-54 | -1.69E-46 |
| MS.gene052253 | MS.gene067366 | 0.828091 | 1.09E-54 | -1.69E-46 |
| MS.gene053836 | MS.gene067366 | 0.831166 | 1.95E-55 | -1.69E-46 |
| MS.gene054011 | MS.gene067366 | 0.801104 | 1.05E-48 | -1.69E-46 |
| MS.gene054183 | MS.gene067366 | 0.85324 | 2.72E-61 | -1.69E-46 |
| MS.gene054473 | MS.gene067366 | 0.871869 | 4.92E-67 | -1.69E-46 |
| MS.gene055356 | MS.gene067366 | 0.81537 | 9.57E-52 | -1.69E-46 |
| MS.gene055358 | MS.gene067366 | 0.829473 | 5.05E-55 | -1.69E-46 |
| MS.gene055604 | MS.gene067366 | 0.804904 | 1.73E-49 | -1.69E-46 |
| MS.gene05594 | MS.gene067366 | 0.836683 | 8.11E-57 | -1.69E-46 |
| MS.gene056723 | MS.gene067366 | 0.805542 | 1.27E-49 | -1.69E-46 |
| MS.gene056902 | MS.gene067366 | 0.805063 | 1.60E-49 | -1.69E-46 |
| MS.gene057121 | MS.gene067366 | 0.819878 | 9.22E-53 | -1.69E-46 |
| MS.gene057469 | MS.gene067366 | 0.86889 | 4.67E-66 | -1.69E-46 |
| MS.gene057476 | MS.gene067366 | 0.847696 | 9.82E-60 | -1.69E-46 |
| MS.gene058002 | MS.gene067366 | 0.825127 | 5.55E-54 | -1.69E-46 |
| MS.gene05811 | MS.gene067366 | 0.846991 | 1.53E-59 | -1.69E-46 |
| MS.gene058710 | MS.gene067366 | 0.800404 | 1.46E-48 | -1.69E-46 |
| MS.gene058739 | MS.gene067366 | 0.825653 | 4.17E-54 | -1.69E-46 |
| MS.gene05886 | MS.gene067366 | 0.812451 | 4.21E-51 | -1.69E-46 |
| MS.gene05907 | MS.gene067366 | 0.829593 | 4.72E-55 | -1.69E-46 |
| MS.gene059420 | MS.gene067366 | 0.861736 | 8.32E-64 | -1.69E-46 |
| MS.gene059462 | MS.gene067366 | 0.820084 | 8.27E-53 | -1.69E-46 |
| MS.gene05984 | MS.gene067366 | 0.823266 | 1.52E-53 | -1.69E-46 |
| MS.gene061114 | MS.gene067366 | -0.831083 | 2.04E-55 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 63 sgRNAs with CRISPR-Local
Find 185 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGCTATGTTGTTGGCTGTGC+TGG | 0.188280 | 2.1:+36306805 | MS.gene067366:CDS |
| GCTATTGATGCTCTAGTTAT+TGG | 0.197686 | 2.1:+36306311 | MS.gene067366:CDS |
| CACTTCCATTTCACTTTGAT+TGG | 0.213484 | 2.1:-36304827 | None:intergenic |
| TATACAACATCCATCATATT+TGG | 0.217301 | 2.1:-36307495 | None:intergenic |
| CTTCAAAATGTGACTCCTTT+GGG | 0.232194 | 2.1:-36304891 | None:intergenic |
| ATTGGAAGAGTTGTGACTTC+TGG | 0.238593 | 2.1:+36306329 | MS.gene067366:CDS |
| ACTTATCATCTTGGAATTCT+TGG | 0.247958 | 2.1:+36306467 | MS.gene067366:CDS |
| ATCTAAACTCCACTCTTAAA+AGG | 0.259045 | 2.1:+36306989 | MS.gene067366:CDS |
| AGTACCTGGCCTGGAGTTAA+TGG | 0.270568 | 2.1:-36305057 | None:intergenic |
| TGAGAAAGATGATTTGGTTA+TGG | 0.293811 | 2.1:+36306364 | MS.gene067366:CDS |
| GAGAAAGATGATTTGGTTAT+GGG | 0.296791 | 2.1:+36306365 | MS.gene067366:CDS |
| TTGATTGGTTGCTAACTCTT+TGG | 0.299019 | 2.1:-36304812 | None:intergenic |
| TTTAGTGGACTGTCAGCTTA+TGG | 0.321184 | 2.1:+36306676 | MS.gene067366:CDS |
| TGAAATTTGCAAACCACAAA+AGG | 0.339905 | 2.1:+36306708 | MS.gene067366:CDS |
| ACTTCAAAATGTGACTCCTT+TGG | 0.341261 | 2.1:-36304892 | None:intergenic |
| TAAGTTTGAGAAAGATGATT+TGG | 0.344609 | 2.1:+36306358 | MS.gene067366:CDS |
| CTTTATCACTATGTATTTGT+TGG | 0.353004 | 2.1:-36304851 | None:intergenic |
| AGCATCCCTTCTGCATTTGT+TGG | 0.353234 | 2.1:+36307651 | MS.gene067366:CDS |
| TTTCCACTCACTTATCATCT+TGG | 0.363774 | 2.1:+36306458 | MS.gene067366:CDS |
| TTGGAAGAGTTGTGACTTCT+GGG | 0.364560 | 2.1:+36306330 | MS.gene067366:CDS |
| GCATTTGTTGGACTCTTCAA+TGG | 0.366825 | 2.1:+36307663 | MS.gene067366:CDS |
| GTATTTGTTTCAGCAGCATC+TGG | 0.388705 | 2.1:+36306739 | MS.gene067366:CDS |
| TCTTCGCAATGGTCAGTTGC+AGG | 0.394420 | 2.1:+36307599 | MS.gene067366:CDS |
| GTTGCTAACATGAAAGCATT+TGG | 0.399078 | 2.1:+36307414 | MS.gene067366:CDS |
| GGTTTCTTCCTTGTAGTTGA+AGG | 0.426312 | 2.1:-36306965 | None:intergenic |
| AGCAACCAATCAAAGTGAAA+TGG | 0.440276 | 2.1:+36304822 | MS.gene067366:CDS |
| GGCTGAGTACAGTGTAGTTA+AGG | 0.443379 | 2.1:+36306400 | MS.gene067366:CDS |
| GCTATGTTGTTGGCTGTGCT+GGG | 0.443602 | 2.1:+36306806 | MS.gene067366:CDS |
| TTCATGCGGTTAATAAGATA+AGG | 0.447040 | 2.1:-36304994 | None:intergenic |
| GGATCAGTTGGAAATATTGT+AGG | 0.464203 | 2.1:+36306760 | MS.gene067366:CDS |
| TTTGGTAGAGTGTCTGTTTG+TGG | 0.484471 | 2.1:+36307432 | MS.gene067366:CDS |
| GTGATTGAAGACAGGTCGTT+GGG | 0.490083 | 2.1:+36307621 | MS.gene067366:CDS |
| TAATGGAGTTGCAAAGCTAA+TGG | 0.491094 | 2.1:-36305040 | None:intergenic |
| TTTAGTCTTTCGTTGAAGCC+AGG | 0.494169 | 2.1:+36304928 | MS.gene067366:CDS |
| CAAACCACAAAAGGGTGAAA+AGG | 0.495171 | 2.1:+36306717 | MS.gene067366:CDS |
| ATTTCTGAGTATACTGATGT+TGG | 0.495880 | 2.1:+36307459 | MS.gene067366:CDS |
| AAAATATATGTCAATTCCAT+CGG | 0.496992 | 2.1:-36307358 | None:intergenic |
| TGGTTATGGGAGTATTCACT+TGG | 0.497920 | 2.1:+36306378 | MS.gene067366:CDS |
| GAAATTTGCAAACCACAAAA+GGG | 0.506126 | 2.1:+36306709 | MS.gene067366:CDS |
| AAATATATGTCAATTCCATC+GGG | 0.511624 | 2.1:-36307357 | None:intergenic |
| TTTGCAACTCCATTAACTCC+AGG | 0.512264 | 2.1:+36305048 | MS.gene067366:CDS |
| GAGAGCTTCACCAAATATGA+TGG | 0.514085 | 2.1:+36307485 | MS.gene067366:CDS |
| TCAGCAGCATCTGGATCAGT+TGG | 0.518867 | 2.1:+36306748 | MS.gene067366:CDS |
| CAAATGATGAGTACCTGGCC+TGG | 0.527096 | 2.1:-36305066 | None:intergenic |
| TGATGATGCCTTCAACTACA+AGG | 0.530215 | 2.1:+36306957 | MS.gene067366:CDS |
| TTTAAGAGTGGAGTTTAGAT+CGG | 0.530559 | 2.1:-36306986 | None:intergenic |
| TTCAAAATGTGACTCCTTTG+GGG | 0.537629 | 2.1:-36304890 | None:intergenic |
| ATTATCACTTCATCAGAACC+TGG | 0.540233 | 2.1:-36304946 | None:intergenic |
| AACTCCATTAACTCCAGGCC+AGG | 0.553286 | 2.1:+36305053 | MS.gene067366:CDS |
| TATTTCAGGTACTTTCCCGA+TGG | 0.559890 | 2.1:+36307342 | MS.gene067366:intron |
| ATAAGTGAGTGGAAATTCAA+AGG | 0.566962 | 2.1:-36306450 | None:intergenic |
| AAGAGTCCAACAAATGCAGA+AGG | 0.573531 | 2.1:-36307657 | None:intergenic |
| AGTTGCAGGTGATTGAAGAC+AGG | 0.582175 | 2.1:+36307613 | MS.gene067366:CDS |
| ACATTACTCAAAGAAGAGCT+AGG | 0.588928 | 2.1:+36306931 | MS.gene067366:CDS |
| CTCTTCAATGGAGATAACGT+TGG | 0.603986 | 2.1:+36307675 | MS.gene067366:CDS |
| TACAAGAGAATCACTATCAG+AGG | 0.605599 | 2.1:+36307516 | MS.gene067366:CDS |
| GGTTATGGGAGTATTCACTT+GGG | 0.610812 | 2.1:+36306379 | MS.gene067366:CDS |
| GGTGATTGAAGACAGGTCGT+TGG | 0.611028 | 2.1:+36307620 | MS.gene067366:CDS |
| ACATTGGATTATCTTCGCAA+TGG | 0.613205 | 2.1:+36307588 | MS.gene067366:CDS |
| AGTGGACTGTCAGCTTATGG+AGG | 0.616255 | 2.1:+36306679 | MS.gene067366:CDS |
| ATTCCAAGATGATAAGTGAG+TGG | 0.641007 | 2.1:-36306461 | None:intergenic |
| AGAGTCCAACAAATGCAGAA+GGG | 0.673061 | 2.1:-36307656 | None:intergenic |
| TCGCATTGAAGATTCCCCAA+AGG | 0.693369 | 2.1:+36304876 | MS.gene067366:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAATAATAATAATTGAGT+TGG | + | chr2.1:36305851-36305870 | MS.gene067366:intron | 10.0% |
| !! | AAAATAATAATAATTGAGTT+GGG | + | chr2.1:36305852-36305871 | MS.gene067366:intron | 10.0% |
| !! | ATTTACAAAAATCATTAATT+AGG | - | chr2.1:36306140-36306159 | None:intergenic | 10.0% |
| !! | TTGAATAAAAATACAAAAAA+AGG | - | chr2.1:36306050-36306069 | None:intergenic | 10.0% |
| !!! | ACAATTTTATATATATTCTA+TGG | + | chr2.1:36306168-36306187 | MS.gene067366:intron | 10.0% |
| !!! | ATATAAAAAGATACATTTTT+TGG | - | chr2.1:36305498-36305517 | None:intergenic | 10.0% |
| !!! | ATTTAAGTTAGAATTAAAAA+AGG | - | chr2.1:36305414-36305433 | None:intergenic | 10.0% |
| !!! | TATAAAAAGATACATTTTTT+GGG | - | chr2.1:36305497-36305516 | None:intergenic | 10.0% |
| !!! | TTGATTTATTTGTTAATAAT+TGG | + | chr2.1:36305127-36305146 | MS.gene067366:intron | 10.0% |
| !! | AAACAAATAAAAATGAAAAC+AGG | - | chr2.1:36305232-36305251 | None:intergenic | 15.0% |
| !! | CTAAGATAAAAATAAATTCA+TGG | - | chr2.1:36306908-36306927 | None:intergenic | 15.0% |
| !!! | AAATAATAATAATTGAGTTG+GGG | + | chr2.1:36305853-36305872 | MS.gene067366:intron | 15.0% |
| !!! | ATATATATTCTATGGATTTT+TGG | + | chr2.1:36306176-36306195 | MS.gene067366:intron | 15.0% |
| !!! | CATGAATTTATTTTTATCTT+AGG | + | chr2.1:36306906-36306925 | MS.gene067366:intron | 15.0% |
| !!! | TAATTTGTTTTGAATATTTC+AGG | + | chr2.1:36307328-36307347 | MS.gene067366:intron | 15.0% |
| !! | AAAATATATGTCAATTCCAT+CGG | - | chr2.1:36307361-36307380 | None:intergenic | 20.0% |
| !! | ACAAAAATCATTAATTAGGA+TGG | - | chr2.1:36306136-36306155 | None:intergenic | 20.0% |
| !! | ATAAAACAAATCAAACACTA+TGG | + | chr2.1:36305582-36305601 | MS.gene067366:intron | 20.0% |
| !! | CCTATTTATAGAAGAATATT+GGG | + | chr2.1:36307043-36307062 | MS.gene067366:intron | 20.0% |
| !! | TAATGTAAAAAAGAACATGA+CGG | - | chr2.1:36305653-36305672 | None:intergenic | 20.0% |
| !! | TCCTATTTATAGAAGAATAT+TGG | + | chr2.1:36307042-36307061 | MS.gene067366:intron | 20.0% |
| !! | TTCAAAACAAATTACATCAA+AGG | - | chr2.1:36307322-36307341 | None:intergenic | 20.0% |
| !!! | TTTTTCTAACTCATAATCTT+GGG | - | chr2.1:36305732-36305751 | None:intergenic | 20.0% |
| ! | AAAAATACAAAAAAAGGCAG+CGG | - | chr2.1:36306044-36306063 | None:intergenic | 25.0% |
| ! | AAATATATGTCAATTCCATC+GGG | - | chr2.1:36307360-36307379 | None:intergenic | 25.0% |
| ! | CCCAATATTCTTCTATAAAT+AGG | - | chr2.1:36307046-36307065 | None:intergenic | 25.0% |
| ! | CCTAATTATAAGAGAAAGTT+GGG | - | chr2.1:36307128-36307147 | None:intergenic | 25.0% |
| ! | CTTTATCACTATGTATTTGT+TGG | - | chr2.1:36304854-36304873 | None:intergenic | 25.0% |
| ! | GTACTCAAAATTCTTGATAT+AGG | + | chr2.1:36305093-36305112 | MS.gene067366:intron | 25.0% |
| ! | TAAGTTTGAGAAAGATGATT+TGG | + | chr2.1:36306358-36306377 | MS.gene067366:CDS | 25.0% |
| ! | TATACAACATCCATCATATT+TGG | - | chr2.1:36307498-36307517 | None:intergenic | 25.0% |
| ! | TCAACAAAAGTTTATGTATC+TGG | - | chr2.1:36307105-36307124 | None:intergenic | 25.0% |
| ! | TCCTAATTATAAGAGAAAGT+TGG | - | chr2.1:36307129-36307148 | None:intergenic | 25.0% |
| ! | TGCTTTAATTATTTACCATC+CGG | + | chr2.1:36305265-36305284 | MS.gene067366:intron | 25.0% |
| !! | AGATTTTTCTGCTAAAACAT+TGG | + | chr2.1:36307572-36307591 | MS.gene067366:CDS | 25.0% |
| !! | GCTGATTATATGAATGTTTT+TGG | + | chr2.1:36307549-36307568 | MS.gene067366:CDS | 25.0% |
| !! | GTTTTTCTAACTCATAATCT+TGG | - | chr2.1:36305733-36305752 | None:intergenic | 25.0% |
| !! | TTATAAGATATCCTTTTTGC+AGG | + | chr2.1:36306652-36306671 | MS.gene067366:intron | 25.0% |
| !!! | AAAAAAAGGTGAGCTTTATT+AGG | + | chr2.1:36306833-36306852 | MS.gene067366:intron | 25.0% |
| !!! | ACATATATTTTGACAATGTC+GGG | + | chr2.1:36307370-36307389 | MS.gene067366:CDS | 25.0% |
| !!! | GACATATATTTTGACAATGT+CGG | + | chr2.1:36307369-36307388 | MS.gene067366:CDS | 25.0% |
| !!! | TAATAAAGCTCACCTTTTTT+TGG | - | chr2.1:36306834-36306853 | None:intergenic | 25.0% |
| AAACCATACTAGATAACCAA+TGG | - | chr2.1:36306230-36306249 | None:intergenic | 30.0% | |
| AAATATTGCACCCTAGAAAA+GGG | - | chr2.1:36306098-36306117 | None:intergenic | 30.0% | |
| ACTTATCATCTTGGAATTCT+TGG | + | chr2.1:36306467-36306486 | MS.gene067366:CDS | 30.0% | |
| ATAAGTGAGTGGAAATTCAA+AGG | - | chr2.1:36306453-36306472 | None:intergenic | 30.0% | |
| ATCTAAACTCCACTCTTAAA+AGG | + | chr2.1:36306989-36307008 | MS.gene067366:CDS | 30.0% | |
| ATTTCTGAGTATACTGATGT+TGG | + | chr2.1:36307459-36307478 | MS.gene067366:CDS | 30.0% | |
| CCCAACTTTCTCTTATAATT+AGG | + | chr2.1:36307125-36307144 | MS.gene067366:intron | 30.0% | |
| GAAATTTGCAAACCACAAAA+GGG | + | chr2.1:36306709-36306728 | MS.gene067366:CDS | 30.0% | |
| GAAGAAAAATGTCTAGTGAA+TGG | + | chr2.1:36306556-36306575 | MS.gene067366:intron | 30.0% | |
| TAAATATTGCACCCTAGAAA+AGG | - | chr2.1:36306099-36306118 | None:intergenic | 30.0% | |
| TGAAATTTGCAAACCACAAA+AGG | + | chr2.1:36306708-36306727 | MS.gene067366:CDS | 30.0% | |
| TTCATGCGGTTAATAAGATA+AGG | - | chr2.1:36304997-36305016 | None:intergenic | 30.0% | |
| TTGATATTACTGATGTGATG+TGG | + | chr2.1:36305319-36305338 | MS.gene067366:intron | 30.0% | |
| TTTAAGAGTGGAGTTTAGAT+CGG | - | chr2.1:36306989-36307008 | None:intergenic | 30.0% | |
| ! | GGACAATATGCAAAACTTTT+AGG | + | chr2.1:36306781-36306800 | MS.gene067366:CDS | 30.0% |
| !! | GAGAAAGATGATTTGGTTAT+GGG | + | chr2.1:36306365-36306384 | MS.gene067366:CDS | 30.0% |
| !! | TGAGAAAGATGATTTGGTTA+TGG | + | chr2.1:36306364-36306383 | MS.gene067366:CDS | 30.0% |
| !! | TTCTTCTTGTTGTCCTATTT+TGG | + | chr2.1:36306277-36306296 | MS.gene067366:intron | 30.0% |
| !!! | ACATTTTGAAGTCAAAACTG+AGG | + | chr2.1:36304903-36304922 | MS.gene067366:CDS | 30.0% |
| !!! | ATATATTTTGACAATGTCGG+GGG | + | chr2.1:36307372-36307391 | MS.gene067366:CDS | 30.0% |
| !!! | CATATATTTTGACAATGTCG+GGG | + | chr2.1:36307371-36307390 | MS.gene067366:CDS | 30.0% |
| !!! | GTCTCAGGTTTCATTTTTTT+CGG | + | chr2.1:36305962-36305981 | MS.gene067366:intron | 30.0% |
| AATCAAACACTATGGTCTAG+TGG | + | chr2.1:36305590-36305609 | MS.gene067366:intron | 35.0% | |
| ACATTACTCAAAGAAGAGCT+AGG | + | chr2.1:36306931-36306950 | MS.gene067366:CDS | 35.0% | |
| ACATTGGATTATCTTCGCAA+TGG | + | chr2.1:36307588-36307607 | MS.gene067366:CDS | 35.0% | |
| ACTTCAAAATGTGACTCCTT+TGG | - | chr2.1:36304895-36304914 | None:intergenic | 35.0% | |
| AGCAACCAATCAAAGTGAAA+TGG | + | chr2.1:36304822-36304841 | MS.gene067366:CDS | 35.0% | |
| AGCCAAAATCTTTGTACTCA+AGG | - | chr2.1:36306866-36306885 | None:intergenic | 35.0% | |
| ATTATCACTTCATCAGAACC+TGG | - | chr2.1:36304949-36304968 | None:intergenic | 35.0% | |
| ATTCCAAGATGATAAGTGAG+TGG | - | chr2.1:36306464-36306483 | None:intergenic | 35.0% | |
| CACTTCCATTTCACTTTGAT+TGG | - | chr2.1:36304830-36304849 | None:intergenic | 35.0% | |
| CTCTTATAATTAGGACCAGA+TGG | + | chr2.1:36307134-36307153 | MS.gene067366:intron | 35.0% | |
| CTTCAAAATGTGACTCCTTT+GGG | - | chr2.1:36304894-36304913 | None:intergenic | 35.0% | |
| CTTCTATAAATAGGACCAGA+GGG | - | chr2.1:36307037-36307056 | None:intergenic | 35.0% | |
| GCCAAAATCTTTGTACTCAA+GGG | - | chr2.1:36306865-36306884 | None:intergenic | 35.0% | |
| GCTATTGATGCTCTAGTTAT+TGG | + | chr2.1:36306311-36306330 | MS.gene067366:CDS | 35.0% | |
| GGATCAGTTGGAAATATTGT+AGG | + | chr2.1:36306760-36306779 | MS.gene067366:CDS | 35.0% | |
| GTGTCGAATATCTATGTATG+TGG | - | chr2.1:36307171-36307190 | None:intergenic | 35.0% | |
| TAATGGAGTTGCAAAGCTAA+TGG | - | chr2.1:36305043-36305062 | None:intergenic | 35.0% | |
| TACAAGAGAATCACTATCAG+AGG | + | chr2.1:36307516-36307535 | MS.gene067366:CDS | 35.0% | |
| TCTTCTATAAATAGGACCAG+AGG | - | chr2.1:36307038-36307057 | None:intergenic | 35.0% | |
| TTCAAAATGTGACTCCTTTG+GGG | - | chr2.1:36304893-36304912 | None:intergenic | 35.0% | |
| TTCTTCAACTTTATGACAGC+AGG | - | chr2.1:36306542-36306561 | None:intergenic | 35.0% | |
| TTGAAGTATGCTTCTCTTCA+AGG | + | chr2.1:36305940-36305959 | MS.gene067366:intron | 35.0% | |
| TTTCCACTCACTTATCATCT+TGG | + | chr2.1:36306458-36306477 | MS.gene067366:CDS | 35.0% | |
| ! | AAGACTTGAACCCTTTTCTA+GGG | + | chr2.1:36306085-36306104 | MS.gene067366:intron | 35.0% |
| ! | AATACCTTTTCACCCTTTTG+TGG | - | chr2.1:36306724-36306743 | None:intergenic | 35.0% |
| ! | ATCCTTTTTGCAGGATTTAG+TGG | + | chr2.1:36306661-36306680 | MS.gene067366:intron | 35.0% |
| ! | GGATCTTGAGTGATTTTGTT+GGG | - | chr2.1:36306206-36306225 | None:intergenic | 35.0% |
| ! | TTGAAGAGAAGCATACTTCA+AGG | - | chr2.1:36305941-36305960 | None:intergenic | 35.0% |
| ! | TTGATTGGTTGCTAACTCTT+TGG | - | chr2.1:36304815-36304834 | None:intergenic | 35.0% |
| !! | AATAATAATTGAGTTGGGGC+TGG | + | chr2.1:36305857-36305876 | MS.gene067366:intron | 35.0% |
| !! | GCTAACAAACCTTTTAAGAG+TGG | - | chr2.1:36307001-36307020 | None:intergenic | 35.0% |
| !! | GTTGCTAACATGAAAGCATT+TGG | + | chr2.1:36307414-36307433 | MS.gene067366:CDS | 35.0% |
| !! | TCTGGACTGATTTTTGAACT+AGG | - | chr2.1:36307087-36307106 | None:intergenic | 35.0% |
| !!! | CTTTTAGGTTGCTATGTTGT+TGG | + | chr2.1:36306796-36306815 | MS.gene067366:CDS | 35.0% |
| !!! | TTTTTTTCGGTGATTGAAGC+TGG | + | chr2.1:36305975-36305994 | MS.gene067366:intron | 35.0% |
| AAACCAACCTGTGAATTGGT+CGG | - | chr2.1:36305181-36305200 | None:intergenic | 40.0% | |
| AAGAGTCCAACAAATGCAGA+AGG | - | chr2.1:36307660-36307679 | None:intergenic | 40.0% | |
| AGAGTCCAACAAATGCAGAA+GGG | - | chr2.1:36307659-36307678 | None:intergenic | 40.0% | |
| ATTGGAAGAGTTGTGACTTC+TGG | + | chr2.1:36306329-36306348 | MS.gene067366:CDS | 40.0% | |
| CAAACCACAAAAGGGTGAAA+AGG | + | chr2.1:36306717-36306736 | MS.gene067366:CDS | 40.0% | |
| CCAAACAAATGATGAGTACC+TGG | - | chr2.1:36305074-36305093 | None:intergenic | 40.0% | |
| CCAGGTACTCATCATTTGTT+TGG | + | chr2.1:36305071-36305090 | MS.gene067366:intron | 40.0% | |
| CCATACTAGATAACCAATGG+CGG | - | chr2.1:36306227-36306246 | None:intergenic | 40.0% | |
| CTAGAAAAGGGTTCAAGTCT+TGG | - | chr2.1:36306086-36306105 | None:intergenic | 40.0% | |
| CTCTTCAATGGAGATAACGT+TGG | + | chr2.1:36307675-36307694 | MS.gene067366:CDS | 40.0% | |
| GAGAGCTTCACCAAATATGA+TGG | + | chr2.1:36307485-36307504 | MS.gene067366:CDS | 40.0% | |
| GATCAAACCAACCTGTGAAT+TGG | - | chr2.1:36305185-36305204 | None:intergenic | 40.0% | |
| GGTTTCTTCCTTGTAGTTGA+AGG | - | chr2.1:36306968-36306987 | None:intergenic | 40.0% | |
| GTATTTGTTTCAGCAGCATC+TGG | + | chr2.1:36306739-36306758 | MS.gene067366:CDS | 40.0% | |
| GTCCACTAAATCCTGCAAAA+AGG | - | chr2.1:36306666-36306685 | None:intergenic | 40.0% | |
| TTACCATCCGGTTCAATATC+CGG | + | chr2.1:36305277-36305296 | MS.gene067366:intron | 40.0% | |
| TTGGAAGAGTTGTGACTTCT+GGG | + | chr2.1:36306330-36306349 | MS.gene067366:CDS | 40.0% | |
| TTTGCAACTCCATTAACTCC+AGG | + | chr2.1:36305048-36305067 | MS.gene067366:CDS | 40.0% | |
| ! | CAAGACTTGAACCCTTTTCT+AGG | + | chr2.1:36306084-36306103 | MS.gene067366:intron | 40.0% |
| ! | CAGGTTGAATTAACTGCTGT+TGG | - | chr2.1:36305213-36305232 | None:intergenic | 40.0% |
| ! | CCAGAAAAGAGAGTGTAGTT+CGG | - | chr2.1:36306513-36306532 | None:intergenic | 40.0% |
| ! | CGGATCTTGAGTGATTTTGT+TGG | - | chr2.1:36306207-36306226 | None:intergenic | 40.0% |
| ! | GCATTTGTTGGACTCTTCAA+TGG | + | chr2.1:36307663-36307682 | MS.gene067366:CDS | 40.0% |
| ! | GCCCTTGAGTACAAAGATTT+TGG | + | chr2.1:36306861-36306880 | MS.gene067366:intron | 40.0% |
| ! | TAACTAGAGCATCAATAGCC+TGG | - | chr2.1:36306310-36306329 | None:intergenic | 40.0% |
| ! | TATTTCAGGTACTTTCCCGA+TGG | + | chr2.1:36307342-36307361 | MS.gene067366:intron | 40.0% |
| ! | TGATGATGCCTTCAACTACA+AGG | + | chr2.1:36306957-36306976 | MS.gene067366:CDS | 40.0% |
| ! | TTTAGTCTTTCGTTGAAGCC+AGG | + | chr2.1:36304928-36304947 | MS.gene067366:CDS | 40.0% |
| ! | TTTGGTAGAGTGTCTGTTTG+TGG | + | chr2.1:36307432-36307451 | MS.gene067366:CDS | 40.0% |
| !! | AGGTTCTAAGTTAACACCAC+CGG | - | chr2.1:36305921-36305940 | None:intergenic | 40.0% |
| !! | GGTTATGGGAGTATTCACTT+GGG | + | chr2.1:36306379-36306398 | MS.gene067366:CDS | 40.0% |
| !! | TGGTTATGGGAGTATTCACT+TGG | + | chr2.1:36306378-36306397 | MS.gene067366:CDS | 40.0% |
| !! | TTTAGTGGACTGTCAGCTTA+TGG | + | chr2.1:36306676-36306695 | MS.gene067366:CDS | 40.0% |
| !!! | TCCTATTTTGGCACTTTTCC+AGG | + | chr2.1:36306289-36306308 | MS.gene067366:intron | 40.0% |
| AATCACTCAAGATCCGCCAT+TGG | + | chr2.1:36306211-36306230 | MS.gene067366:intron | 45.0% | |
| AGCATCCCTTCTGCATTTGT+TGG | + | chr2.1:36307651-36307670 | MS.gene067366:CDS | 45.0% | |
| AGTTGCAGGTGATTGAAGAC+AGG | + | chr2.1:36307613-36307632 | MS.gene067366:CDS | 45.0% | |
| ATGCTTCTCTTCAAGGTCTC+AGG | + | chr2.1:36305947-36305966 | MS.gene067366:intron | 45.0% | |
| GGCTGAGTACAGTGTAGTTA+AGG | + | chr2.1:36306400-36306419 | MS.gene067366:CDS | 45.0% | |
| GTGATTGAAGACAGGTCGTT+GGG | + | chr2.1:36307621-36307640 | MS.gene067366:CDS | 45.0% | |
| GTGGTTCTTAGTACTCCATC+TGG | - | chr2.1:36307152-36307171 | None:intergenic | 45.0% | |
| TCAAGAACCGACCAATTCAC+AGG | + | chr2.1:36305171-36305190 | MS.gene067366:intron | 45.0% | |
| TCGCATTGAAGATTCCCCAA+AGG | + | chr2.1:36304876-36304895 | MS.gene067366:CDS | 45.0% | |
| ! | AGAACATGACGGAATCGACA+CGG | - | chr2.1:36305642-36305661 | None:intergenic | 45.0% |
| ! | CCGAACTACACTCTCTTTTC+TGG | + | chr2.1:36306510-36306529 | MS.gene067366:intron | 45.0% |
| ! | CCGCCATTGGTTATCTAGTA+TGG | + | chr2.1:36306224-36306243 | MS.gene067366:intron | 45.0% |
| !! | AAGCGCTGTAGCTTTTCATG+CGG | - | chr2.1:36305011-36305030 | None:intergenic | 45.0% |
| !! | GCCTGGAAAAGTGCCAAAAT+AGG | - | chr2.1:36306293-36306312 | None:intergenic | 45.0% |
| !! | GGTTCTAAGTTAACACCACC+GGG | - | chr2.1:36305920-36305939 | None:intergenic | 45.0% |
| !! | TTCACAGGTTGGTTTGATCG+TGG | + | chr2.1:36305186-36305205 | MS.gene067366:intron | 45.0% |
| !!! | TATATCATATATTTTTAATT+TGG | - | chr2.1:36305808-36305827 | None:intergenic | 5.0% |
| AACTCCATTAACTCCAGGCC+AGG | + | chr2.1:36305053-36305072 | MS.gene067366:CDS | 50.0% | |
| AGTACCTGGCCTGGAGTTAA+TGG | - | chr2.1:36305060-36305079 | None:intergenic | 50.0% | |
| CAAATGATGAGTACCTGGCC+TGG | - | chr2.1:36305069-36305088 | None:intergenic | 50.0% | |
| CTGTGCTGGGAGCCAAAAAA+AGG | + | chr2.1:36306819-36306838 | MS.gene067366:CDS | 50.0% | |
| GAACCGACCAATTCACAGGT+TGG | + | chr2.1:36305175-36305194 | MS.gene067366:intron | 50.0% | |
| GCGATGTCAAATACTCCCTC+TGG | + | chr2.1:36307019-36307038 | MS.gene067366:intron | 50.0% | |
| GGTGATTGAAGACAGGTCGT+TGG | + | chr2.1:36307620-36307639 | MS.gene067366:CDS | 50.0% | |
| TAAGTTAACACCACCGGGCA+GGG | - | chr2.1:36305915-36305934 | None:intergenic | 50.0% | |
| TCAGCAGCATCTGGATCAGT+TGG | + | chr2.1:36306748-36306767 | MS.gene067366:CDS | 50.0% | |
| TCTTCGCAATGGTCAGTTGC+AGG | + | chr2.1:36307599-36307618 | MS.gene067366:CDS | 50.0% | |
| ! | GCTATGTTGTTGGCTGTGCT+GGG | + | chr2.1:36306806-36306825 | MS.gene067366:CDS | 50.0% |
| ! | TGCTATGTTGTTGGCTGTGC+TGG | + | chr2.1:36306805-36306824 | MS.gene067366:CDS | 50.0% |
| !! | AGTGGACTGTCAGCTTATGG+AGG | + | chr2.1:36306679-36306698 | MS.gene067366:CDS | 50.0% |
| ACTATCTGCGTGCGATGGCA+TGG | - | chr2.1:36306007-36306026 | None:intergenic | 55.0% | |
| ATAGCCACACCCAGCCTTGA+AGG | + | chr2.1:36305882-36305901 | MS.gene067366:intron | 55.0% | |
| CCACCGGATATTGAACCGGA+TGG | - | chr2.1:36305283-36305302 | None:intergenic | 55.0% | |
| CCATCCGGTTCAATATCCGG+TGG | + | chr2.1:36305280-36305299 | MS.gene067366:intron | 55.0% | |
| CCTGCCACCGGATATTGAAC+CGG | - | chr2.1:36305287-36305306 | None:intergenic | 55.0% | |
| CGGTTCAATATCCGGTGGCA+GGG | + | chr2.1:36305285-36305304 | MS.gene067366:intron | 55.0% | |
| CTAAGTTAACACCACCGGGC+AGG | - | chr2.1:36305916-36305935 | None:intergenic | 55.0% | |
| GGTTCAATATCCGGTGGCAG+GGG | + | chr2.1:36305286-36305305 | MS.gene067366:intron | 55.0% | |
| TAGCCACACCCAGCCTTGAA+GGG | + | chr2.1:36305883-36305902 | MS.gene067366:intron | 55.0% | |
| TGCAGACTATCTGCGTGCGA+TGG | - | chr2.1:36306012-36306031 | None:intergenic | 55.0% | |
| CCGGTTCAATATCCGGTGGC+AGG | + | chr2.1:36305284-36305303 | MS.gene067366:intron | 60.0% | |
| GATCCCTTCAAGGCTGGGTG+TGG | - | chr2.1:36305889-36305908 | None:intergenic | 60.0% | |
| GGACGGATCCCTTCAAGGCT+GGG | - | chr2.1:36305894-36305913 | None:intergenic | 60.0% | |
| TCAATATCCGGTGGCAGGGG+CGG | + | chr2.1:36305289-36305308 | MS.gene067366:intron | 60.0% | |
| TTAACACCACCGGGCAGGGA+CGG | - | chr2.1:36305911-36305930 | None:intergenic | 60.0% | |
| GGCAGGGACGGATCCCTTCA+AGG | - | chr2.1:36305899-36305918 | None:intergenic | 65.0% | |
| GGGACGGATCCCTTCAAGGC+TGG | - | chr2.1:36305895-36305914 | None:intergenic | 65.0% | |
| TGAAGGGATCCGTCCCTGCC+CGG | + | chr2.1:36305899-36305918 | MS.gene067366:intron | 65.0% | |
| AGGGATCCGTCCCTGCCCGG+TGG | + | chr2.1:36305902-36305921 | MS.gene067366:intron | 75.0% | |
| CCCAGATCCGCCCCTGCCAC+CGG | - | chr2.1:36305299-36305318 | None:intergenic | 75.0% | |
| CCGGTGGCAGGGGCGGATCT+GGG | + | chr2.1:36305296-36305315 | MS.gene067366:intron | 75.0% | |
| TCCGGTGGCAGGGGCGGATC+TGG | + | chr2.1:36305295-36305314 | MS.gene067366:intron | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2.1 | gene | 36304806 | 36307728 | 36304806 | ID=MS.gene067366 |
| chr2.1 | mRNA | 36304806 | 36307728 | 36304806 | ID=MS.gene067366.t1;Parent=MS.gene067366 |
| chr2.1 | exon | 36304806 | 36305074 | 36304806 | ID=MS.gene067366.t1.exon1;Parent=MS.gene067366.t1 |
| chr2.1 | CDS | 36304806 | 36305074 | 36304806 | ID=cds.MS.gene067366.t1;Parent=MS.gene067366.t1 |
| chr2.1 | exon | 36306311 | 36306488 | 36306311 | ID=MS.gene067366.t1.exon2;Parent=MS.gene067366.t1 |
| chr2.1 | CDS | 36306311 | 36306488 | 36306311 | ID=cds.MS.gene067366.t1;Parent=MS.gene067366.t1 |
| chr2.1 | exon | 36306674 | 36306840 | 36306674 | ID=MS.gene067366.t1.exon3;Parent=MS.gene067366.t1 |
| chr2.1 | CDS | 36306674 | 36306840 | 36306674 | ID=cds.MS.gene067366.t1;Parent=MS.gene067366.t1 |
| chr2.1 | exon | 36306928 | 36307010 | 36306928 | ID=MS.gene067366.t1.exon4;Parent=MS.gene067366.t1 |
| chr2.1 | CDS | 36306928 | 36307010 | 36306928 | ID=cds.MS.gene067366.t1;Parent=MS.gene067366.t1 |
| chr2.1 | exon | 36307350 | 36307728 | 36307350 | ID=MS.gene067366.t1.exon5;Parent=MS.gene067366.t1 |
| chr2.1 | CDS | 36307350 | 36307728 | 36307350 | ID=cds.MS.gene067366.t1;Parent=MS.gene067366.t1 |
| Gene Sequence |
| Protein sequence |
