Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene067596.t1 | XP_003607789.2 | 96.8 | 981 | 29 | 1 | 1 | 979 | 1 | 981 | 0.00E+00 | 1827.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene067596.t1 | P53535 | 79.1 | 916 | 188 | 1 | 64 | 979 | 62 | 974 | 0.0e+00 | 1430.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene067596.t1 | G7JHG9 | 96.8 | 981 | 29 | 1 | 1 | 979 | 1 | 981 | 0.0e+00 | 1827.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049195 | MS.gene067596 | 0.806687 | 7.29E-50 | -1.69E-46 |
| MS.gene049297 | MS.gene067596 | 0.86738 | 1.43E-65 | -1.69E-46 |
| MS.gene04933 | MS.gene067596 | 0.822641 | 2.12E-53 | -1.69E-46 |
| MS.gene049758 | MS.gene067596 | 0.811228 | 7.78E-51 | -1.69E-46 |
| MS.gene050226 | MS.gene067596 | 0.842752 | 2.13E-58 | -1.69E-46 |
| MS.gene050227 | MS.gene067596 | 0.840637 | 7.71E-58 | -1.69E-46 |
| MS.gene050228 | MS.gene067596 | 0.84922 | 3.72E-60 | -1.69E-46 |
| MS.gene050330 | MS.gene067596 | -0.819751 | 9.85E-53 | -1.69E-46 |
| MS.gene050558 | MS.gene067596 | 0.821755 | 3.41E-53 | -1.69E-46 |
| MS.gene050623 | MS.gene067596 | -0.816311 | 5.90E-52 | -1.69E-46 |
| MS.gene050642 | MS.gene067596 | 0.864728 | 9.87E-65 | -1.69E-46 |
| MS.gene050787 | MS.gene067596 | 0.804486 | 2.11E-49 | -1.69E-46 |
| MS.gene050820 | MS.gene067596 | 0.816029 | 6.83E-52 | -1.69E-46 |
| MS.gene051240 | MS.gene067596 | 0.821651 | 3.60E-53 | -1.69E-46 |
| MS.gene051662 | MS.gene067596 | 0.834036 | 3.78E-56 | -1.69E-46 |
| MS.gene051663 | MS.gene067596 | 0.834259 | 3.32E-56 | -1.69E-46 |
| MS.gene051860 | MS.gene067596 | 0.823907 | 1.08E-53 | -1.69E-46 |
| MS.gene051983 | MS.gene067596 | 0.812917 | 3.33E-51 | -1.69E-46 |
| MS.gene052011 | MS.gene067596 | -0.809082 | 2.26E-50 | -1.69E-46 |
| MS.gene052176 | MS.gene067596 | 0.825766 | 3.92E-54 | -1.69E-46 |
| MS.gene052309 | MS.gene067596 | -0.802301 | 5.99E-49 | -1.69E-46 |
| MS.gene052376 | MS.gene067596 | 0.807526 | 4.84E-50 | -1.69E-46 |
| MS.gene052600 | MS.gene067596 | 0.854504 | 1.18E-61 | -1.69E-46 |
| MS.gene053836 | MS.gene067596 | 0.875863 | 2.20E-68 | -1.69E-46 |
| MS.gene053907 | MS.gene067596 | 0.830062 | 3.63E-55 | -1.69E-46 |
| MS.gene053971 | MS.gene067596 | 0.819181 | 1.33E-52 | -1.69E-46 |
| MS.gene054473 | MS.gene067596 | 0.847859 | 8.86E-60 | -1.69E-46 |
| MS.gene054942 | MS.gene067596 | 0.882802 | 7.67E-71 | -1.69E-46 |
| MS.gene054983 | MS.gene067596 | 0.827055 | 1.93E-54 | -1.69E-46 |
| MS.gene055358 | MS.gene067596 | 0.820875 | 5.44E-53 | -1.69E-46 |
| MS.gene055422 | MS.gene067596 | 0.817387 | 3.39E-52 | -1.69E-46 |
| MS.gene055428 | MS.gene067596 | 0.830959 | 2.19E-55 | -1.69E-46 |
| MS.gene056451 | MS.gene067596 | 0.802272 | 6.07E-49 | -1.69E-46 |
| MS.gene056612 | MS.gene067596 | 0.804255 | 2.36E-49 | -1.69E-46 |
| MS.gene056979 | MS.gene067596 | 0.800816 | 1.21E-48 | -1.69E-46 |
| MS.gene057121 | MS.gene067596 | 0.840496 | 8.40E-58 | -1.69E-46 |
| MS.gene057245 | MS.gene067596 | 0.814777 | 1.30E-51 | -1.69E-46 |
| MS.gene057439 | MS.gene067596 | 0.8066 | 7.60E-50 | -1.69E-46 |
| MS.gene058002 | MS.gene067596 | 0.810304 | 1.23E-50 | -1.69E-46 |
| MS.gene05811 | MS.gene067596 | 0.827834 | 1.26E-54 | -1.69E-46 |
| MS.gene058142 | MS.gene067596 | 0.815914 | 7.24E-52 | -1.69E-46 |
| MS.gene058749 | MS.gene067596 | 0.803067 | 4.16E-49 | -1.69E-46 |
| MS.gene05907 | MS.gene067596 | 0.819555 | 1.09E-52 | -1.69E-46 |
| MS.gene05984 | MS.gene067596 | 0.830143 | 3.47E-55 | -1.69E-46 |
| MS.gene060476 | MS.gene067596 | 0.805384 | 1.37E-49 | -1.69E-46 |
| MS.gene061040 | MS.gene067596 | -0.821172 | 4.65E-53 | -1.69E-46 |
| MS.gene061049 | MS.gene067596 | 0.821825 | 3.29E-53 | -1.69E-46 |
| MS.gene061114 | MS.gene067596 | -0.815719 | 8.00E-52 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene067596.t1 | MTR_4g082950 | 96.840 | 981 | 29 | 1 | 1 | 979 | 1 | 981 | 0.0 | 1967 |
| MS.gene067596.t1 | MTR_0288s0040 | 75.057 | 878 | 187 | 8 | 67 | 941 | 44 | 892 | 0.0 | 1347 |
| MS.gene067596.t1 | MTR_3g462340 | 66.422 | 408 | 135 | 2 | 572 | 979 | 435 | 840 | 0.0 | 584 |
| MS.gene067596.t1 | MTR_3g462340 | 57.207 | 444 | 184 | 3 | 84 | 527 | 31 | 468 | 3.64e-174 | 529 |
| MS.gene067596.t1 | MTR_2g014460 | 51.741 | 402 | 185 | 5 | 579 | 979 | 595 | 988 | 2.97e-131 | 421 |
| MS.gene067596.t1 | MTR_2g014460 | 48.434 | 415 | 202 | 5 | 80 | 491 | 183 | 588 | 9.58e-121 | 393 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene067596.t1 | AT3G29320 | 70.886 | 948 | 232 | 5 | 41 | 979 | 50 | 962 | 0.0 | 1396 |
| MS.gene067596.t1 | AT3G46970 | 65.931 | 408 | 137 | 2 | 572 | 979 | 436 | 841 | 0.0 | 586 |
| MS.gene067596.t1 | AT3G46970 | 54.393 | 478 | 207 | 5 | 52 | 527 | 1 | 469 | 9.05e-174 | 528 |
Find 228 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAGCTTTCTAATTGCTCTTC+TGG | 0.206585 | 4.2:+26699448 | None:intergenic |
| TTCTATGGAGAAGTTATTTC+AGG | 0.216727 | 4.2:-26697034 | MS.gene067596:CDS |
| GATCAGGAATGACGGTAAAT+TGG | 0.232719 | 4.2:-26696403 | MS.gene067596:CDS |
| CGACGAATTGATGGGATCTT+TGG | 0.243497 | 4.2:-26692923 | MS.gene067596:CDS |
| TTCTGTGTGTTTAGTACAGC+TGG | 0.244339 | 4.2:-26693420 | MS.gene067596:intron |
| GATTTGAAGGCTTTCAATAC+TGG | 0.245062 | 4.2:-26696875 | MS.gene067596:CDS |
| GTGATTCCCTTATCATAAAT+TGG | 0.247012 | 4.2:-26698230 | MS.gene067596:CDS |
| TCTTATCCAGTTAGATTCTA+TGG | 0.254682 | 4.2:-26697049 | MS.gene067596:CDS |
| ATTTGTACCACCACTTTATC+TGG | 0.266367 | 4.2:+26696371 | None:intergenic |
| AATTACCCTGCATGGGGATA+TGG | 0.274456 | 4.2:-26697358 | MS.gene067596:CDS |
| GCAAGCTTATTACATGTCTA+TGG | 0.286957 | 4.2:-26698169 | MS.gene067596:CDS |
| TTTAGAGGATGTGGCTAATC+AGG | 0.301609 | 4.2:-26697964 | MS.gene067596:intron |
| TGCATTCCAATTTATGATAA+GGG | 0.315129 | 4.2:+26698224 | None:intergenic |
| GGACCACAATCGCAAGTTTA+TGG | 0.317000 | 4.2:+26696922 | None:intergenic |
| GGTAACAGATCTTGAGAAAT+TGG | 0.317053 | 4.2:-26695185 | MS.gene067596:CDS |
| CGAACCATCATTGGCAGGTT+TGG | 0.317570 | 4.2:+26695540 | None:intergenic |
| TGCTGAGGCTCTGAGGAAAC+TGG | 0.320911 | 4.2:-26697994 | MS.gene067596:CDS |
| CATGAAGTTGTTTCTGAGTC+TGG | 0.322339 | 4.2:-26695861 | MS.gene067596:CDS |
| CCCATTCCAAATCAAACATT+TGG | 0.324417 | 4.2:-26699520 | MS.gene067596:CDS |
| ATGAATATGCCAGAGATATA+TGG | 0.324624 | 4.2:-26692395 | MS.gene067596:CDS |
| AACTAAAGAATTTGATTTGA+AGG | 0.326464 | 4.2:-26696888 | MS.gene067596:CDS |
| GACTGGAGGAGAAAGTATTT+TGG | 0.328200 | 4.2:-26696990 | MS.gene067596:CDS |
| CAGAAACGGATCCATCTTCT+AGG | 0.345198 | 4.2:+26695259 | None:intergenic |
| TCGCTGCCAAATGTTTGATT+TGG | 0.348700 | 4.2:+26699514 | None:intergenic |
| TTGCATTCCAATTTATGATA+AGG | 0.352440 | 4.2:+26698223 | None:intergenic |
| AGTTGCAAAGTAAGCCTTAC+TGG | 0.354966 | 4.2:+26698266 | None:intergenic |
| AGGGCATTGTTAAATGCAAT+TGG | 0.355293 | 4.2:-26698041 | MS.gene067596:CDS |
| AAGCTTGGGATATTACTAAA+AGG | 0.359212 | 4.2:-26696271 | MS.gene067596:intron |
| TCTGCATTCCTGAGCTGATT+AGG | 0.359974 | 4.2:-26696328 | MS.gene067596:CDS |
| TTCTTTAGTTGAAACTTTAG+TGG | 0.365317 | 4.2:+26696901 | None:intergenic |
| CAGTTCCGCTGCTTTGTCGC+TGG | 0.365462 | 4.2:+26699409 | None:intergenic |
| GTCTTCTGTTCCAATCCATT+TGG | 0.366997 | 4.2:+26695210 | None:intergenic |
| CAAGGACTTCCCTAGCTACT+TGG | 0.367893 | 4.2:-26692857 | MS.gene067596:CDS |
| CAGAGTGGATAGAATCAAAA+AGG | 0.368398 | 4.2:-26694884 | MS.gene067596:CDS |
| TTTCATGTTGCTTGTTCCAC+TGG | 0.374129 | 4.2:+26693389 | None:intergenic |
| CCTTCTATTGATTCATCCCC+AGG | 0.374631 | 4.2:+26696503 | None:intergenic |
| CCTTTACTTCTTCAAACCTT+GGG | 0.375831 | 4.2:+26692983 | None:intergenic |
| ATGAATGGATGTGTGCAAAT+TGG | 0.376874 | 4.2:-26693360 | MS.gene067596:CDS |
| ACTAGAGAATATTGAGTTGC+CGG | 0.377955 | 4.2:-26695790 | MS.gene067596:CDS |
| AGGAGGAAGTTGCTGAAAAC+TGG | 0.381174 | 4.2:-26697285 | MS.gene067596:CDS |
| GGCAGCGACAAAACAACATT+TGG | 0.381599 | 4.2:-26699499 | MS.gene067596:CDS |
| ACTTCTCCATAGAATCTAAC+TGG | 0.381745 | 4.2:+26697043 | None:intergenic |
| CTGAAGAAATTGCAGGGTTA+AGG | 0.382529 | 4.2:-26693263 | MS.gene067596:CDS |
| GAATATTGAGTTGCCGGATT+CGG | 0.385197 | 4.2:-26695784 | MS.gene067596:CDS |
| GAAACTGGGTTACAATTTAG+AGG | 0.387483 | 4.2:-26697979 | MS.gene067596:CDS |
| CCATTCCCAAGGGCTGCATC+TGG | 0.392098 | 4.2:+26697430 | None:intergenic |
| TGTTGATGATAATGATATAA+AGG | 0.401976 | 4.2:-26695706 | MS.gene067596:CDS |
| CATCAATTCGTCGTAGTTGT+AGG | 0.404593 | 4.2:+26692933 | None:intergenic |
| TTCTTGCTTTCTAGACTCCT+TGG | 0.404594 | 4.2:-26697389 | MS.gene067596:CDS |
| AAAACAATTGTTTGTTCCTC+GGG | 0.409628 | 4.2:-26694073 | MS.gene067596:CDS |
| AGATGCAATGTTTGATGTAC+AGG | 0.409770 | 4.2:-26694802 | MS.gene067596:intron |
| TTTATCTATACCTAATGTGC+TGG | 0.410380 | 4.2:+26693515 | None:intergenic |
| GAAAACAATTGTTTGTTCCT+CGG | 0.412817 | 4.2:-26694074 | MS.gene067596:CDS |
| CGTGCTGATTATTTCCTTGT+TGG | 0.415896 | 4.2:-26692880 | MS.gene067596:CDS |
| ATCAGGAATGACGGTAAATT+GGG | 0.418725 | 4.2:-26696402 | MS.gene067596:CDS |
| CTCCATTTCTCTAGTGCCTC+TGG | 0.422856 | 4.2:+26696073 | None:intergenic |
| TTCAAAAGATCTCCAATCTC+TGG | 0.423187 | 4.2:+26693955 | None:intergenic |
| GTGAATTGTCCCAGCACATT+AGG | 0.424344 | 4.2:-26693525 | MS.gene067596:intron |
| ACTTCTTCAAACCTTGGGTC+TGG | 0.424710 | 4.2:+26692988 | None:intergenic |
| CTCAATTCTCCATATATCTC+TGG | 0.425589 | 4.2:+26692386 | None:intergenic |
| GTCCATTGCTTAGCTCCATC+TGG | 0.426769 | 4.2:+26697010 | None:intergenic |
| TCAACATCAATTTCCTCAAC+AGG | 0.426786 | 4.2:+26695723 | None:intergenic |
| CTTCATGACAGCGTATGCTT+TGG | 0.427119 | 4.2:+26696844 | None:intergenic |
| GCCTTTACTTCTTCAAACCT+TGG | 0.427852 | 4.2:+26692982 | None:intergenic |
| CTACAACTACGACGAATTGA+TGG | 0.429462 | 4.2:-26692932 | MS.gene067596:CDS |
| ATAAACTCAACCACCGAATC+CGG | 0.430194 | 4.2:+26695771 | None:intergenic |
| TACCAGAGGCACTAGAGAAA+TGG | 0.435864 | 4.2:-26696075 | MS.gene067596:CDS |
| GTTGAAATAAGAGAAGAAGT+TGG | 0.438273 | 4.2:-26693318 | MS.gene067596:CDS |
| GTTAATCACGATCCAGAGAT+TGG | 0.440645 | 4.2:-26693967 | MS.gene067596:CDS |
| AAATTCCAGAATAAAACAAA+TGG | 0.446135 | 4.2:-26695289 | MS.gene067596:CDS |
| GTTTAAGCTGGGAGAAAGCT+TGG | 0.447465 | 4.2:-26696286 | MS.gene067596:CDS |
| GCTCAGGAATGCAGAGTGTT+GGG | 0.447491 | 4.2:+26696336 | None:intergenic |
| CCAAATGTTTGATTTGGAAT+GGG | 0.448607 | 4.2:+26699520 | None:intergenic |
| ATTTGAAGGCTTTCAATACT+GGG | 0.449329 | 4.2:-26696874 | MS.gene067596:CDS |
| GCACGAGCTGAAGAAATTGC+AGG | 0.449587 | 4.2:-26693270 | MS.gene067596:CDS |
| ATGGAGTTTGACTCTTCTGC+AGG | 0.451498 | 4.2:-26696056 | MS.gene067596:CDS |
| TCACAGTGAGATTGTAAAAG+AGG | 0.453012 | 4.2:-26695463 | MS.gene067596:CDS |
| AATTCCAGAATAAAACAAAT+GGG | 0.455147 | 4.2:-26695288 | MS.gene067596:CDS |
| AACATGAAATTTGCAATGAA+TGG | 0.455487 | 4.2:-26693375 | MS.gene067596:CDS |
| TAGATGTGAAGGGTTTAAGC+TGG | 0.457167 | 4.2:-26696298 | MS.gene067596:CDS |
| ACGTATAACGAAGGACGGTC+AGG | 0.458652 | 4.2:-26697305 | MS.gene067596:CDS |
| GCCCTTGGGAATGGAGGATT+AGG | 0.460169 | 4.2:-26697421 | MS.gene067596:CDS |
| GCAACACTAACATTGTAATC+AGG | 0.461165 | 4.2:+26693568 | None:intergenic |
| ATCGTTTCTCTGAATTTCCC+AGG | 0.466281 | 4.2:+26697075 | None:intergenic |
| TTCCTCAGAGCCTCAGCATA+AGG | 0.466595 | 4.2:+26697999 | None:intergenic |
| ATGCCTTGTCAACTTCCTCT+TGG | 0.467018 | 4.2:+26692830 | None:intergenic |
| CTACCAGTTTGCAGATAATG+AGG | 0.467112 | 4.2:-26694916 | MS.gene067596:intron |
| TCATTTATCAAAGAGAAAAC+AGG | 0.468618 | 4.2:-26694840 | MS.gene067596:CDS |
| CAGGAGCCAGATGCAGCCCT+TGG | 0.468994 | 4.2:-26697436 | MS.gene067596:CDS |
| CCAGATGCAGCCCTTGGGAA+TGG | 0.470381 | 4.2:-26697430 | MS.gene067596:CDS |
| TGTACATCAAACATTGCATC+TGG | 0.471752 | 4.2:+26694804 | None:intergenic |
| GCCAAATGTTTGATTTGGAA+TGG | 0.475175 | 4.2:+26699519 | None:intergenic |
| TTAGCCATGCGAACCATCAT+TGG | 0.477716 | 4.2:+26695531 | None:intergenic |
| TTACTGGGCTCAAATTTCTC+AGG | 0.477856 | 4.2:+26698282 | None:intergenic |
| CCTGGGGATGAATCAATAGA+AGG | 0.480958 | 4.2:-26696503 | MS.gene067596:CDS |
| GCACGCTTTGAAAAGAGATC+AGG | 0.482626 | 4.2:-26696419 | MS.gene067596:CDS |
| ATTAATATCCTAATCAGCTC+AGG | 0.483954 | 4.2:+26696320 | None:intergenic |
| GTTGCTGAAATGCTAATTCC+TGG | 0.484765 | 4.2:-26693550 | MS.gene067596:CDS |
| TGATTATTTCCTTGTTGGCA+AGG | 0.485154 | 4.2:-26692875 | MS.gene067596:CDS |
| GCTTATGATGTTCCAATACC+TGG | 0.487169 | 4.2:-26696962 | MS.gene067596:CDS |
| GGGCATTGTTAAATGCAATT+GGG | 0.488583 | 4.2:-26698040 | MS.gene067596:CDS |
| GGGTTACAATTTAGAGGATG+TGG | 0.490297 | 4.2:-26697973 | MS.gene067596:CDS |
| ATTGGGAATTTACAACTCTC+AGG | 0.491640 | 4.2:-26698023 | MS.gene067596:CDS |
| TGAGAAATTTGAGCCCAGTA+AGG | 0.492541 | 4.2:-26698280 | MS.gene067596:CDS |
| AGCTCAGGAATGCAGAGTGT+TGG | 0.492601 | 4.2:+26696335 | None:intergenic |
| AAAATAATAACCAAATGGAT+TGG | 0.492703 | 4.2:-26695220 | MS.gene067596:CDS |
| CCATGCGAACCATCATTGGC+AGG | 0.495713 | 4.2:+26695535 | None:intergenic |
| GTAAAATTCATCACAGATGT+AGG | 0.497209 | 4.2:-26693997 | MS.gene067596:CDS |
| CATGTCTATGGAGTATCTAC+AGG | 0.498390 | 4.2:-26698157 | MS.gene067596:intron |
| TGATCCAAACCTGCCAATGA+TGG | 0.501005 | 4.2:-26695544 | MS.gene067596:CDS |
| ACGGCAGTTACTGAATATCA+TGG | 0.501069 | 4.2:-26694145 | MS.gene067596:CDS |
| TGCTGGGACAATTCACTGCC+AGG | 0.501865 | 4.2:+26693532 | None:intergenic |
| CCCAAGGTTTGAAGAAGTAA+AGG | 0.502177 | 4.2:-26692983 | MS.gene067596:CDS |
| GAAAGAAAGAGCAGAAGGAA+AGG | 0.502282 | 4.2:-26693241 | MS.gene067596:intron |
| TCTGTTACATTCTATACCCT+GGG | 0.504284 | 4.2:-26696520 | MS.gene067596:CDS |
| GAACTGAAAGAACGACTCAT+TGG | 0.504413 | 4.2:-26699392 | MS.gene067596:CDS |
| ATGGCTAACCTATGTGTTGT+TGG | 0.505350 | 4.2:-26695516 | MS.gene067596:CDS |
| TCTTGGCACTCCAAGTAGCT+AGG | 0.505786 | 4.2:+26692847 | None:intergenic |
| TTTAAGCTGGGAGAAAGCTT+GGG | 0.507352 | 4.2:-26696285 | MS.gene067596:CDS |
| GGGGATATGGACTTAGATAC+AGG | 0.507764 | 4.2:-26697345 | MS.gene067596:CDS |
| TAGGATATTAATAGATGTGA+AGG | 0.509727 | 4.2:-26696309 | MS.gene067596:CDS |
| ATGTCAATCTTGAACACAGC+TGG | 0.511229 | 4.2:-26692450 | MS.gene067596:CDS |
| CAAAGCGTGCAATGATATCC+TGG | 0.512626 | 4.2:+26696432 | None:intergenic |
| TGCAAATTGGAACTCTCGAT+GGG | 0.513093 | 4.2:-26693347 | MS.gene067596:CDS |
| TTAGTAAAATAATAACCAAA+TGG | 0.516483 | 4.2:-26695225 | MS.gene067596:CDS |
| AACACTGAATTACCCTGCAT+GGG | 0.518781 | 4.2:-26697365 | MS.gene067596:CDS |
| ATTTATAGATGGGAAATCCC+TGG | 0.520518 | 4.2:-26697093 | MS.gene067596:intron |
| CGTATAAATTCAGCAGTGAC+CGG | 0.523558 | 4.2:-26692425 | MS.gene067596:CDS |
| TCTATGGAGAAGTTATTTCA+GGG | 0.524340 | 4.2:-26697033 | MS.gene067596:CDS |
| ATCTGTTACATTCTATACCC+TGG | 0.525611 | 4.2:-26696521 | MS.gene067596:CDS |
| CAACACTGAATTACCCTGCA+TGG | 0.525876 | 4.2:-26697366 | MS.gene067596:CDS |
| AATGGATTGGAACAGAAGAC+TGG | 0.527079 | 4.2:-26695207 | MS.gene067596:CDS |
| ATGAAGTTGTTTCTGAGTCT+GGG | 0.528015 | 4.2:-26695860 | MS.gene067596:CDS |
| TACCATTCTCAACAACCTGC+AGG | 0.529812 | 4.2:-26699565 | MS.gene067596:CDS |
| TACCACCACTTTATCTGGAA+GGG | 0.530834 | 4.2:+26696376 | None:intergenic |
| AGCGTATTCATGAATACAAA+CGG | 0.531740 | 4.2:-26694164 | MS.gene067596:CDS |
| TAAGGTCAGGATTACAGAAA+CGG | 0.536410 | 4.2:+26695245 | None:intergenic |
| AGGAGCCAGATGCAGCCCTT+GGG | 0.536797 | 4.2:-26697435 | MS.gene067596:CDS |
| TGTGTTTAGTACAGCTGGGA+TGG | 0.537168 | 4.2:-26693415 | MS.gene067596:intron |
| TATTGAGTTGCCGGATTCGG+TGG | 0.537392 | 4.2:-26695781 | MS.gene067596:CDS |
| GCTAACCTATGTGTTGTTGG+TGG | 0.537986 | 4.2:-26695513 | MS.gene067596:CDS |
| TGGCATATTCATGAATAGTC+CGG | 0.538204 | 4.2:+26692406 | None:intergenic |
| CCACCATAAACTTGCGATTG+TGG | 0.538883 | 4.2:-26696925 | MS.gene067596:CDS |
| GAATTGATGGGATCTTTGGA+AGG | 0.539315 | 4.2:-26692919 | MS.gene067596:CDS |
| CTAAGTCCATATCCCCATGC+AGG | 0.541539 | 4.2:+26697352 | None:intergenic |
| GGATCTTTGGAAGGGAATGA+AGG | 0.543201 | 4.2:-26692910 | MS.gene067596:CDS |
| GGCCTAATCCTCCATTCCCA+AGG | 0.543436 | 4.2:+26697419 | None:intergenic |
| TGCCTGCAGGTTGTTGAGAA+TGG | 0.544681 | 4.2:+26699563 | None:intergenic |
| TTAAGGAAAGAAAGAGCAGA+AGG | 0.545172 | 4.2:-26693246 | MS.gene067596:CDS |
| CTTCTATTGATTCATCCCCA+GGG | 0.545352 | 4.2:+26696504 | None:intergenic |
| AATTTCCTCAACAGGATCAT+CGG | 0.550548 | 4.2:+26695731 | None:intergenic |
| AGATGTGAAGGGTTTAAGCT+GGG | 0.551577 | 4.2:-26696297 | MS.gene067596:CDS |
| TGCAGTTTGTACCAGACCCA+AGG | 0.553369 | 4.2:-26692999 | MS.gene067596:intron |
| GATGGAGCTAAGCAATGGAC+TGG | 0.553513 | 4.2:-26697007 | MS.gene067596:CDS |
| GAAGTTATTTCAGGGCCAGA+TGG | 0.555318 | 4.2:-26697025 | MS.gene067596:CDS |
| GTAAAGGCATATGTTAGAAG+TGG | 0.555712 | 4.2:-26692967 | MS.gene067596:CDS |
| ATTATGCTCAGCCTCTCTCC+AGG | 0.555876 | 4.2:-26696450 | MS.gene067596:CDS |
| CTTGGCACTCCAAGTAGCTA+GGG | 0.557235 | 4.2:+26692848 | None:intergenic |
| TTTATAGATGGGAAATCCCT+GGG | 0.557702 | 4.2:-26697092 | MS.gene067596:intron |
| ATGGGGTGACACCTAGAAGA+TGG | 0.559245 | 4.2:-26695270 | MS.gene067596:CDS |
| CCTGCCAATGATGGTTCGCA+TGG | 0.561781 | 4.2:-26695535 | MS.gene067596:CDS |
| GTACCACCACTTTATCTGGA+AGG | 0.562027 | 4.2:+26696375 | None:intergenic |
| TACAACTACGACGAATTGAT+GGG | 0.563220 | 4.2:-26692931 | MS.gene067596:CDS |
| GGACTCCCTTCCAGATAAAG+TGG | 0.565184 | 4.2:-26696381 | MS.gene067596:CDS |
| TTGGGAATGGAGGATTAGGC+CGG | 0.569055 | 4.2:-26697417 | MS.gene067596:CDS |
| TGCAACGAATTCATTTGAAG+TGG | 0.569514 | 4.2:+26698365 | None:intergenic |
| AATTTATGATAAGGGAATCA+CGG | 0.571565 | 4.2:+26698232 | None:intergenic |
| CTAGAAAGCAAGAAGCAAGC+CGG | 0.574391 | 4.2:+26697398 | None:intergenic |
| GATGCAGCCCTTGGGAATGG+AGG | 0.575620 | 4.2:-26697427 | MS.gene067596:CDS |
| CGGCAGTTACTGAATATCAT+GGG | 0.576863 | 4.2:-26694144 | MS.gene067596:CDS |
| GAAATTGGCTGTACTTCGCA+AGG | 0.577155 | 4.2:-26695170 | MS.gene067596:intron |
| TCTGTGTGTTTAGTACAGCT+GGG | 0.577930 | 4.2:-26693419 | MS.gene067596:intron |
| GGCCAGATGGAGCTAAGCAA+TGG | 0.578954 | 4.2:-26697012 | MS.gene067596:CDS |
| GTTGCAAAGTAAGCCTTACT+GGG | 0.579338 | 4.2:+26698267 | None:intergenic |
| TTGGAAGGGAATGAAGGCTA+TGG | 0.582974 | 4.2:-26692904 | MS.gene067596:CDS |
| TTTATTATTTCCACATGTCG+AGG | 0.583310 | 4.2:+26696025 | None:intergenic |
| CAACATATGTTCAAGCCAAG+AGG | 0.583384 | 4.2:-26694023 | MS.gene067596:CDS |
| TATGGACTTAGATACAGGTA+TGG | 0.584953 | 4.2:-26697340 | MS.gene067596:CDS |
| CGACGAAGAAGAAGATGTAG+TGG | 0.585058 | 4.2:-26695640 | MS.gene067596:CDS |
| AGGATATTAATAGATGTGAA+GGG | 0.588908 | 4.2:-26696308 | MS.gene067596:CDS |
| TAGGGAAGTCCTTGCCAACA+AGG | 0.589757 | 4.2:+26692866 | None:intergenic |
| GCTGAGGCTCTGAGGAAACT+GGG | 0.590579 | 4.2:-26697993 | MS.gene067596:CDS |
| GGATTTACTTCCTCGACATG+TGG | 0.591364 | 4.2:-26696035 | MS.gene067596:CDS |
| GACGAAGAAGAAGATGTAGT+GGG | 0.591470 | 4.2:-26695639 | MS.gene067596:CDS |
| GTTTAGTACAGCTGGGATGG+AGG | 0.592504 | 4.2:-26693412 | MS.gene067596:intron |
| TCGTTTCTCTGAATTTCCCA+GGG | 0.593399 | 4.2:+26697076 | None:intergenic |
| TTATCTATACCTAATGTGCT+GGG | 0.596409 | 4.2:+26693516 | None:intergenic |
| CAACATATGAATATTATGAG+AGG | 0.596709 | 4.2:-26698203 | MS.gene067596:CDS |
| TCTTGCCGATGATCCTGTTG+AGG | 0.596729 | 4.2:-26695736 | MS.gene067596:CDS |
| GCCTAATCCTCCATTCCCAA+GGG | 0.606925 | 4.2:+26697420 | None:intergenic |
| AGGGTAATTCAGTGTTGCCA+AGG | 0.609943 | 4.2:+26697372 | None:intergenic |
| TAAGTCCATATCCCCATGCA+GGG | 0.610745 | 4.2:+26697353 | None:intergenic |
| AATTGATGGGATCTTTGGAA+GGG | 0.613386 | 4.2:-26692918 | MS.gene067596:CDS |
| GTCCTTATGCTGAGGCTCTG+AGG | 0.613621 | 4.2:-26698001 | MS.gene067596:CDS |
| TGAAAAGAGATCAGGAATGA+CGG | 0.617393 | 4.2:-26696411 | MS.gene067596:CDS |
| TATAACGAAGGACGGTCAGG+AGG | 0.619104 | 4.2:-26697302 | MS.gene067596:CDS |
| TGTCATGAAGAATGCAGAGA+AGG | 0.620102 | 4.2:-26696831 | MS.gene067596:intron |
| AGGTGAGCTTGAATGCCTGC+AGG | 0.620576 | 4.2:+26699550 | None:intergenic |
| CACGAGCTGAAGAAATTGCA+GGG | 0.620721 | 4.2:-26693269 | MS.gene067596:CDS |
| AACATATGAATATTATGAGA+GGG | 0.623422 | 4.2:-26698202 | MS.gene067596:CDS |
| GATTTGGAATGGGAATGTAA+AGG | 0.624865 | 4.2:+26699530 | None:intergenic |
| AATGAAAGAATTGAGTGCTG+AGG | 0.627614 | 4.2:-26694100 | MS.gene067596:CDS |
| GGAGCTAAGCAATGGACTGG+AGG | 0.628655 | 4.2:-26697004 | MS.gene067596:CDS |
| TGCAATGATATCCTGGAGAG+AGG | 0.629144 | 4.2:+26696439 | None:intergenic |
| ATTCAAACAACGTATAACGA+AGG | 0.632464 | 4.2:-26697314 | MS.gene067596:CDS |
| ACAGCTGGGATGGAGGCCAG+TGG | 0.632889 | 4.2:-26693405 | MS.gene067596:CDS |
| GTGCAAATTGGAACTCTCGA+TGG | 0.634864 | 4.2:-26693348 | MS.gene067596:CDS |
| GTGCCAAGAGGAAGTTGACA+AGG | 0.636085 | 4.2:-26692833 | MS.gene067596:CDS |
| TTTGAAGGCTTTCAATACTG+GGG | 0.639183 | 4.2:-26696873 | MS.gene067596:CDS |
| CCACAATCGCAAGTTTATGG+TGG | 0.645345 | 4.2:+26696925 | None:intergenic |
| ATGGATTGGAACAGAAGACT+GGG | 0.645354 | 4.2:-26695206 | MS.gene067596:CDS |
| TATTGGAACATCATAAGCAA+CGG | 0.649331 | 4.2:+26696967 | None:intergenic |
| ACTCTCAGGTCCTTATGCTG+AGG | 0.656696 | 4.2:-26698009 | MS.gene067596:CDS |
| ATTCCAGAATAAAACAAATG+GGG | 0.658074 | 4.2:-26695287 | MS.gene067596:CDS |
| AAACAACGTATAACGAAGGA+CGG | 0.658557 | 4.2:-26697310 | MS.gene067596:CDS |
| TGTTGCCAGCGACAAAGCAG+CGG | 0.667849 | 4.2:-26699414 | MS.gene067596:CDS |
| CAACAAGGAAATAATCAGCA+CGG | 0.670194 | 4.2:+26692881 | None:intergenic |
| TAGCTACTTGGAGTGCCAAG+AGG | 0.674127 | 4.2:-26692845 | MS.gene067596:CDS |
| GTGCCTCTGGTAGAACTGTG+TGG | 0.675525 | 4.2:+26696086 | None:intergenic |
| ATGAGGATCTGCAATCAGAG+TGG | 0.676696 | 4.2:-26694899 | MS.gene067596:CDS |
| ACACTGAATTACCCTGCATG+GGG | 0.680238 | 4.2:-26697364 | MS.gene067596:CDS |
| CTCCCTTCCAGATAAAGTGG+TGG | 0.681896 | 4.2:-26696378 | MS.gene067596:CDS |
| AGTTGCTGAAAACTGGCTTG+AGG | 0.695370 | 4.2:-26697278 | MS.gene067596:intron |
| AAAGAACGACTCATTGGACA+AGG | 0.698404 | 4.2:-26699386 | MS.gene067596:intron |
| AAACCACACAGTTCTACCAG+AGG | 0.720864 | 4.2:-26696089 | MS.gene067596:CDS |
| CTGTTACATTCTATACCCTG+GGG | 0.720986 | 4.2:-26696519 | MS.gene067596:CDS |
| ACGAAGAAGAAGATGTAGTG+GGG | 0.722856 | 4.2:-26695638 | MS.gene067596:CDS |
| GCAAATTGGAACTCTCGATG+GGG | 0.738537 | 4.2:-26693346 | MS.gene067596:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.2 | gene | 26692368 | 26699597 | 26692368 | ID=MS.gene067596 |
| chr4.2 | mRNA | 26692368 | 26699597 | 26692368 | ID=MS.gene067596.t1;Parent=MS.gene067596 |
| chr4.2 | exon | 26699387 | 26699597 | 26699387 | ID=MS.gene067596.t1.exon1;Parent=MS.gene067596.t1 |
| chr4.2 | CDS | 26699387 | 26699597 | 26699387 | ID=cds.MS.gene067596.t1;Parent=MS.gene067596.t1 |
| chr4.2 | exon | 26698158 | 26698390 | 26698158 | ID=MS.gene067596.t1.exon2;Parent=MS.gene067596.t1 |
| chr4.2 | CDS | 26698158 | 26698390 | 26698158 | ID=cds.MS.gene067596.t1;Parent=MS.gene067596.t1 |
| chr4.2 | exon | 26697965 | 26698066 | 26697965 | ID=MS.gene067596.t1.exon3;Parent=MS.gene067596.t1 |
| chr4.2 | CDS | 26697965 | 26698066 | 26697965 | ID=cds.MS.gene067596.t1;Parent=MS.gene067596.t1 |
| chr4.2 | exon | 26697279 | 26697455 | 26697279 | ID=MS.gene067596.t1.exon4;Parent=MS.gene067596.t1 |
| chr4.2 | CDS | 26697279 | 26697455 | 26697279 | ID=cds.MS.gene067596.t1;Parent=MS.gene067596.t1 |
| chr4.2 | exon | 26696832 | 26697107 | 26696832 | ID=MS.gene067596.t1.exon5;Parent=MS.gene067596.t1 |
| chr4.2 | CDS | 26696832 | 26697107 | 26696832 | ID=cds.MS.gene067596.t1;Parent=MS.gene067596.t1 |
| chr4.2 | exon | 26696272 | 26696543 | 26696272 | ID=MS.gene067596.t1.exon6;Parent=MS.gene067596.t1 |
| chr4.2 | CDS | 26696272 | 26696543 | 26696272 | ID=cds.MS.gene067596.t1;Parent=MS.gene067596.t1 |
| chr4.2 | exon | 26696009 | 26696126 | 26696009 | ID=MS.gene067596.t1.exon7;Parent=MS.gene067596.t1 |
| chr4.2 | CDS | 26696009 | 26696126 | 26696009 | ID=cds.MS.gene067596.t1;Parent=MS.gene067596.t1 |
| chr4.2 | exon | 26695440 | 26695889 | 26695440 | ID=MS.gene067596.t1.exon8;Parent=MS.gene067596.t1 |
| chr4.2 | CDS | 26695440 | 26695889 | 26695440 | ID=cds.MS.gene067596.t1;Parent=MS.gene067596.t1 |
| chr4.2 | exon | 26695171 | 26695323 | 26695171 | ID=MS.gene067596.t1.exon9;Parent=MS.gene067596.t1 |
| chr4.2 | CDS | 26695171 | 26695323 | 26695171 | ID=cds.MS.gene067596.t1;Parent=MS.gene067596.t1 |
| chr4.2 | exon | 26694803 | 26694931 | 26694803 | ID=MS.gene067596.t1.exon10;Parent=MS.gene067596.t1 |
| chr4.2 | CDS | 26694803 | 26694931 | 26694803 | ID=cds.MS.gene067596.t1;Parent=MS.gene067596.t1 |
| chr4.2 | exon | 26693954 | 26694190 | 26693954 | ID=MS.gene067596.t1.exon11;Parent=MS.gene067596.t1 |
| chr4.2 | CDS | 26693954 | 26694190 | 26693954 | ID=cds.MS.gene067596.t1;Parent=MS.gene067596.t1 |
| chr4.2 | exon | 26693526 | 26693602 | 26693526 | ID=MS.gene067596.t1.exon12;Parent=MS.gene067596.t1 |
| chr4.2 | CDS | 26693526 | 26693602 | 26693526 | ID=cds.MS.gene067596.t1;Parent=MS.gene067596.t1 |
| chr4.2 | exon | 26693242 | 26693428 | 26693242 | ID=MS.gene067596.t1.exon13;Parent=MS.gene067596.t1 |
| chr4.2 | CDS | 26693242 | 26693428 | 26693242 | ID=cds.MS.gene067596.t1;Parent=MS.gene067596.t1 |
| chr4.2 | exon | 26692816 | 26693016 | 26692816 | ID=MS.gene067596.t1.exon14;Parent=MS.gene067596.t1 |
| chr4.2 | CDS | 26692816 | 26693016 | 26692816 | ID=cds.MS.gene067596.t1;Parent=MS.gene067596.t1 |
| chr4.2 | exon | 26692368 | 26692484 | 26692368 | ID=MS.gene067596.t1.exon15;Parent=MS.gene067596.t1 |
| chr4.2 | CDS | 26692368 | 26692484 | 26692368 | ID=cds.MS.gene067596.t1;Parent=MS.gene067596.t1 |
| Gene Sequence |
| Protein sequence |