AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene067596


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene067596.t1 MTR_4g082950 96.840 981 29 1 1 979 1 981 0.0 1967
MS.gene067596.t1 MTR_0288s0040 75.057 878 187 8 67 941 44 892 0.0 1347
MS.gene067596.t1 MTR_3g462340 66.422 408 135 2 572 979 435 840 0.0 584
MS.gene067596.t1 MTR_3g462340 57.207 444 184 3 84 527 31 468 3.64e-174 529
MS.gene067596.t1 MTR_2g014460 51.741 402 185 5 579 979 595 988 2.97e-131 421
MS.gene067596.t1 MTR_2g014460 48.434 415 202 5 80 491 183 588 9.58e-121 393
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene067596.t1 AT3G29320 70.886 948 232 5 41 979 50 962 0.0 1396
MS.gene067596.t1 AT3G46970 65.931 408 137 2 572 979 436 841 0.0 586
MS.gene067596.t1 AT3G46970 54.393 478 207 5 52 527 1 469 9.05e-174 528

Find 228 sgRNAs with CRISPR-Local

Find 0 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAGCTTTCTAATTGCTCTTC+TGG 0.206585 4.2:+26699448 None:intergenic
TTCTATGGAGAAGTTATTTC+AGG 0.216727 4.2:-26697034 MS.gene067596:CDS
GATCAGGAATGACGGTAAAT+TGG 0.232719 4.2:-26696403 MS.gene067596:CDS
CGACGAATTGATGGGATCTT+TGG 0.243497 4.2:-26692923 MS.gene067596:CDS
TTCTGTGTGTTTAGTACAGC+TGG 0.244339 4.2:-26693420 MS.gene067596:intron
GATTTGAAGGCTTTCAATAC+TGG 0.245062 4.2:-26696875 MS.gene067596:CDS
GTGATTCCCTTATCATAAAT+TGG 0.247012 4.2:-26698230 MS.gene067596:CDS
TCTTATCCAGTTAGATTCTA+TGG 0.254682 4.2:-26697049 MS.gene067596:CDS
ATTTGTACCACCACTTTATC+TGG 0.266367 4.2:+26696371 None:intergenic
AATTACCCTGCATGGGGATA+TGG 0.274456 4.2:-26697358 MS.gene067596:CDS
GCAAGCTTATTACATGTCTA+TGG 0.286957 4.2:-26698169 MS.gene067596:CDS
TTTAGAGGATGTGGCTAATC+AGG 0.301609 4.2:-26697964 MS.gene067596:intron
TGCATTCCAATTTATGATAA+GGG 0.315129 4.2:+26698224 None:intergenic
GGACCACAATCGCAAGTTTA+TGG 0.317000 4.2:+26696922 None:intergenic
GGTAACAGATCTTGAGAAAT+TGG 0.317053 4.2:-26695185 MS.gene067596:CDS
CGAACCATCATTGGCAGGTT+TGG 0.317570 4.2:+26695540 None:intergenic
TGCTGAGGCTCTGAGGAAAC+TGG 0.320911 4.2:-26697994 MS.gene067596:CDS
CATGAAGTTGTTTCTGAGTC+TGG 0.322339 4.2:-26695861 MS.gene067596:CDS
CCCATTCCAAATCAAACATT+TGG 0.324417 4.2:-26699520 MS.gene067596:CDS
ATGAATATGCCAGAGATATA+TGG 0.324624 4.2:-26692395 MS.gene067596:CDS
AACTAAAGAATTTGATTTGA+AGG 0.326464 4.2:-26696888 MS.gene067596:CDS
GACTGGAGGAGAAAGTATTT+TGG 0.328200 4.2:-26696990 MS.gene067596:CDS
CAGAAACGGATCCATCTTCT+AGG 0.345198 4.2:+26695259 None:intergenic
TCGCTGCCAAATGTTTGATT+TGG 0.348700 4.2:+26699514 None:intergenic
TTGCATTCCAATTTATGATA+AGG 0.352440 4.2:+26698223 None:intergenic
AGTTGCAAAGTAAGCCTTAC+TGG 0.354966 4.2:+26698266 None:intergenic
AGGGCATTGTTAAATGCAAT+TGG 0.355293 4.2:-26698041 MS.gene067596:CDS
AAGCTTGGGATATTACTAAA+AGG 0.359212 4.2:-26696271 MS.gene067596:intron
TCTGCATTCCTGAGCTGATT+AGG 0.359974 4.2:-26696328 MS.gene067596:CDS
TTCTTTAGTTGAAACTTTAG+TGG 0.365317 4.2:+26696901 None:intergenic
CAGTTCCGCTGCTTTGTCGC+TGG 0.365462 4.2:+26699409 None:intergenic
GTCTTCTGTTCCAATCCATT+TGG 0.366997 4.2:+26695210 None:intergenic
CAAGGACTTCCCTAGCTACT+TGG 0.367893 4.2:-26692857 MS.gene067596:CDS
CAGAGTGGATAGAATCAAAA+AGG 0.368398 4.2:-26694884 MS.gene067596:CDS
TTTCATGTTGCTTGTTCCAC+TGG 0.374129 4.2:+26693389 None:intergenic
CCTTCTATTGATTCATCCCC+AGG 0.374631 4.2:+26696503 None:intergenic
CCTTTACTTCTTCAAACCTT+GGG 0.375831 4.2:+26692983 None:intergenic
ATGAATGGATGTGTGCAAAT+TGG 0.376874 4.2:-26693360 MS.gene067596:CDS
ACTAGAGAATATTGAGTTGC+CGG 0.377955 4.2:-26695790 MS.gene067596:CDS
AGGAGGAAGTTGCTGAAAAC+TGG 0.381174 4.2:-26697285 MS.gene067596:CDS
GGCAGCGACAAAACAACATT+TGG 0.381599 4.2:-26699499 MS.gene067596:CDS
ACTTCTCCATAGAATCTAAC+TGG 0.381745 4.2:+26697043 None:intergenic
CTGAAGAAATTGCAGGGTTA+AGG 0.382529 4.2:-26693263 MS.gene067596:CDS
GAATATTGAGTTGCCGGATT+CGG 0.385197 4.2:-26695784 MS.gene067596:CDS
GAAACTGGGTTACAATTTAG+AGG 0.387483 4.2:-26697979 MS.gene067596:CDS
CCATTCCCAAGGGCTGCATC+TGG 0.392098 4.2:+26697430 None:intergenic
TGTTGATGATAATGATATAA+AGG 0.401976 4.2:-26695706 MS.gene067596:CDS
CATCAATTCGTCGTAGTTGT+AGG 0.404593 4.2:+26692933 None:intergenic
TTCTTGCTTTCTAGACTCCT+TGG 0.404594 4.2:-26697389 MS.gene067596:CDS
AAAACAATTGTTTGTTCCTC+GGG 0.409628 4.2:-26694073 MS.gene067596:CDS
AGATGCAATGTTTGATGTAC+AGG 0.409770 4.2:-26694802 MS.gene067596:intron
TTTATCTATACCTAATGTGC+TGG 0.410380 4.2:+26693515 None:intergenic
GAAAACAATTGTTTGTTCCT+CGG 0.412817 4.2:-26694074 MS.gene067596:CDS
CGTGCTGATTATTTCCTTGT+TGG 0.415896 4.2:-26692880 MS.gene067596:CDS
ATCAGGAATGACGGTAAATT+GGG 0.418725 4.2:-26696402 MS.gene067596:CDS
CTCCATTTCTCTAGTGCCTC+TGG 0.422856 4.2:+26696073 None:intergenic
TTCAAAAGATCTCCAATCTC+TGG 0.423187 4.2:+26693955 None:intergenic
GTGAATTGTCCCAGCACATT+AGG 0.424344 4.2:-26693525 MS.gene067596:intron
ACTTCTTCAAACCTTGGGTC+TGG 0.424710 4.2:+26692988 None:intergenic
CTCAATTCTCCATATATCTC+TGG 0.425589 4.2:+26692386 None:intergenic
GTCCATTGCTTAGCTCCATC+TGG 0.426769 4.2:+26697010 None:intergenic
TCAACATCAATTTCCTCAAC+AGG 0.426786 4.2:+26695723 None:intergenic
CTTCATGACAGCGTATGCTT+TGG 0.427119 4.2:+26696844 None:intergenic
GCCTTTACTTCTTCAAACCT+TGG 0.427852 4.2:+26692982 None:intergenic
CTACAACTACGACGAATTGA+TGG 0.429462 4.2:-26692932 MS.gene067596:CDS
ATAAACTCAACCACCGAATC+CGG 0.430194 4.2:+26695771 None:intergenic
TACCAGAGGCACTAGAGAAA+TGG 0.435864 4.2:-26696075 MS.gene067596:CDS
GTTGAAATAAGAGAAGAAGT+TGG 0.438273 4.2:-26693318 MS.gene067596:CDS
GTTAATCACGATCCAGAGAT+TGG 0.440645 4.2:-26693967 MS.gene067596:CDS
AAATTCCAGAATAAAACAAA+TGG 0.446135 4.2:-26695289 MS.gene067596:CDS
GTTTAAGCTGGGAGAAAGCT+TGG 0.447465 4.2:-26696286 MS.gene067596:CDS
GCTCAGGAATGCAGAGTGTT+GGG 0.447491 4.2:+26696336 None:intergenic
CCAAATGTTTGATTTGGAAT+GGG 0.448607 4.2:+26699520 None:intergenic
ATTTGAAGGCTTTCAATACT+GGG 0.449329 4.2:-26696874 MS.gene067596:CDS
GCACGAGCTGAAGAAATTGC+AGG 0.449587 4.2:-26693270 MS.gene067596:CDS
ATGGAGTTTGACTCTTCTGC+AGG 0.451498 4.2:-26696056 MS.gene067596:CDS
TCACAGTGAGATTGTAAAAG+AGG 0.453012 4.2:-26695463 MS.gene067596:CDS
AATTCCAGAATAAAACAAAT+GGG 0.455147 4.2:-26695288 MS.gene067596:CDS
AACATGAAATTTGCAATGAA+TGG 0.455487 4.2:-26693375 MS.gene067596:CDS
TAGATGTGAAGGGTTTAAGC+TGG 0.457167 4.2:-26696298 MS.gene067596:CDS
ACGTATAACGAAGGACGGTC+AGG 0.458652 4.2:-26697305 MS.gene067596:CDS
GCCCTTGGGAATGGAGGATT+AGG 0.460169 4.2:-26697421 MS.gene067596:CDS
GCAACACTAACATTGTAATC+AGG 0.461165 4.2:+26693568 None:intergenic
ATCGTTTCTCTGAATTTCCC+AGG 0.466281 4.2:+26697075 None:intergenic
TTCCTCAGAGCCTCAGCATA+AGG 0.466595 4.2:+26697999 None:intergenic
ATGCCTTGTCAACTTCCTCT+TGG 0.467018 4.2:+26692830 None:intergenic
CTACCAGTTTGCAGATAATG+AGG 0.467112 4.2:-26694916 MS.gene067596:intron
TCATTTATCAAAGAGAAAAC+AGG 0.468618 4.2:-26694840 MS.gene067596:CDS
CAGGAGCCAGATGCAGCCCT+TGG 0.468994 4.2:-26697436 MS.gene067596:CDS
CCAGATGCAGCCCTTGGGAA+TGG 0.470381 4.2:-26697430 MS.gene067596:CDS
TGTACATCAAACATTGCATC+TGG 0.471752 4.2:+26694804 None:intergenic
GCCAAATGTTTGATTTGGAA+TGG 0.475175 4.2:+26699519 None:intergenic
TTAGCCATGCGAACCATCAT+TGG 0.477716 4.2:+26695531 None:intergenic
TTACTGGGCTCAAATTTCTC+AGG 0.477856 4.2:+26698282 None:intergenic
CCTGGGGATGAATCAATAGA+AGG 0.480958 4.2:-26696503 MS.gene067596:CDS
GCACGCTTTGAAAAGAGATC+AGG 0.482626 4.2:-26696419 MS.gene067596:CDS
ATTAATATCCTAATCAGCTC+AGG 0.483954 4.2:+26696320 None:intergenic
GTTGCTGAAATGCTAATTCC+TGG 0.484765 4.2:-26693550 MS.gene067596:CDS
TGATTATTTCCTTGTTGGCA+AGG 0.485154 4.2:-26692875 MS.gene067596:CDS
GCTTATGATGTTCCAATACC+TGG 0.487169 4.2:-26696962 MS.gene067596:CDS
GGGCATTGTTAAATGCAATT+GGG 0.488583 4.2:-26698040 MS.gene067596:CDS
GGGTTACAATTTAGAGGATG+TGG 0.490297 4.2:-26697973 MS.gene067596:CDS
ATTGGGAATTTACAACTCTC+AGG 0.491640 4.2:-26698023 MS.gene067596:CDS
TGAGAAATTTGAGCCCAGTA+AGG 0.492541 4.2:-26698280 MS.gene067596:CDS
AGCTCAGGAATGCAGAGTGT+TGG 0.492601 4.2:+26696335 None:intergenic
AAAATAATAACCAAATGGAT+TGG 0.492703 4.2:-26695220 MS.gene067596:CDS
CCATGCGAACCATCATTGGC+AGG 0.495713 4.2:+26695535 None:intergenic
GTAAAATTCATCACAGATGT+AGG 0.497209 4.2:-26693997 MS.gene067596:CDS
CATGTCTATGGAGTATCTAC+AGG 0.498390 4.2:-26698157 MS.gene067596:intron
TGATCCAAACCTGCCAATGA+TGG 0.501005 4.2:-26695544 MS.gene067596:CDS
ACGGCAGTTACTGAATATCA+TGG 0.501069 4.2:-26694145 MS.gene067596:CDS
TGCTGGGACAATTCACTGCC+AGG 0.501865 4.2:+26693532 None:intergenic
CCCAAGGTTTGAAGAAGTAA+AGG 0.502177 4.2:-26692983 MS.gene067596:CDS
GAAAGAAAGAGCAGAAGGAA+AGG 0.502282 4.2:-26693241 MS.gene067596:intron
TCTGTTACATTCTATACCCT+GGG 0.504284 4.2:-26696520 MS.gene067596:CDS
GAACTGAAAGAACGACTCAT+TGG 0.504413 4.2:-26699392 MS.gene067596:CDS
ATGGCTAACCTATGTGTTGT+TGG 0.505350 4.2:-26695516 MS.gene067596:CDS
TCTTGGCACTCCAAGTAGCT+AGG 0.505786 4.2:+26692847 None:intergenic
TTTAAGCTGGGAGAAAGCTT+GGG 0.507352 4.2:-26696285 MS.gene067596:CDS
GGGGATATGGACTTAGATAC+AGG 0.507764 4.2:-26697345 MS.gene067596:CDS
TAGGATATTAATAGATGTGA+AGG 0.509727 4.2:-26696309 MS.gene067596:CDS
ATGTCAATCTTGAACACAGC+TGG 0.511229 4.2:-26692450 MS.gene067596:CDS
CAAAGCGTGCAATGATATCC+TGG 0.512626 4.2:+26696432 None:intergenic
TGCAAATTGGAACTCTCGAT+GGG 0.513093 4.2:-26693347 MS.gene067596:CDS
TTAGTAAAATAATAACCAAA+TGG 0.516483 4.2:-26695225 MS.gene067596:CDS
AACACTGAATTACCCTGCAT+GGG 0.518781 4.2:-26697365 MS.gene067596:CDS
ATTTATAGATGGGAAATCCC+TGG 0.520518 4.2:-26697093 MS.gene067596:intron
CGTATAAATTCAGCAGTGAC+CGG 0.523558 4.2:-26692425 MS.gene067596:CDS
TCTATGGAGAAGTTATTTCA+GGG 0.524340 4.2:-26697033 MS.gene067596:CDS
ATCTGTTACATTCTATACCC+TGG 0.525611 4.2:-26696521 MS.gene067596:CDS
CAACACTGAATTACCCTGCA+TGG 0.525876 4.2:-26697366 MS.gene067596:CDS
AATGGATTGGAACAGAAGAC+TGG 0.527079 4.2:-26695207 MS.gene067596:CDS
ATGAAGTTGTTTCTGAGTCT+GGG 0.528015 4.2:-26695860 MS.gene067596:CDS
TACCATTCTCAACAACCTGC+AGG 0.529812 4.2:-26699565 MS.gene067596:CDS
TACCACCACTTTATCTGGAA+GGG 0.530834 4.2:+26696376 None:intergenic
AGCGTATTCATGAATACAAA+CGG 0.531740 4.2:-26694164 MS.gene067596:CDS
TAAGGTCAGGATTACAGAAA+CGG 0.536410 4.2:+26695245 None:intergenic
AGGAGCCAGATGCAGCCCTT+GGG 0.536797 4.2:-26697435 MS.gene067596:CDS
TGTGTTTAGTACAGCTGGGA+TGG 0.537168 4.2:-26693415 MS.gene067596:intron
TATTGAGTTGCCGGATTCGG+TGG 0.537392 4.2:-26695781 MS.gene067596:CDS
GCTAACCTATGTGTTGTTGG+TGG 0.537986 4.2:-26695513 MS.gene067596:CDS
TGGCATATTCATGAATAGTC+CGG 0.538204 4.2:+26692406 None:intergenic
CCACCATAAACTTGCGATTG+TGG 0.538883 4.2:-26696925 MS.gene067596:CDS
GAATTGATGGGATCTTTGGA+AGG 0.539315 4.2:-26692919 MS.gene067596:CDS
CTAAGTCCATATCCCCATGC+AGG 0.541539 4.2:+26697352 None:intergenic
GGATCTTTGGAAGGGAATGA+AGG 0.543201 4.2:-26692910 MS.gene067596:CDS
GGCCTAATCCTCCATTCCCA+AGG 0.543436 4.2:+26697419 None:intergenic
TGCCTGCAGGTTGTTGAGAA+TGG 0.544681 4.2:+26699563 None:intergenic
TTAAGGAAAGAAAGAGCAGA+AGG 0.545172 4.2:-26693246 MS.gene067596:CDS
CTTCTATTGATTCATCCCCA+GGG 0.545352 4.2:+26696504 None:intergenic
AATTTCCTCAACAGGATCAT+CGG 0.550548 4.2:+26695731 None:intergenic
AGATGTGAAGGGTTTAAGCT+GGG 0.551577 4.2:-26696297 MS.gene067596:CDS
TGCAGTTTGTACCAGACCCA+AGG 0.553369 4.2:-26692999 MS.gene067596:intron
GATGGAGCTAAGCAATGGAC+TGG 0.553513 4.2:-26697007 MS.gene067596:CDS
GAAGTTATTTCAGGGCCAGA+TGG 0.555318 4.2:-26697025 MS.gene067596:CDS
GTAAAGGCATATGTTAGAAG+TGG 0.555712 4.2:-26692967 MS.gene067596:CDS
ATTATGCTCAGCCTCTCTCC+AGG 0.555876 4.2:-26696450 MS.gene067596:CDS
CTTGGCACTCCAAGTAGCTA+GGG 0.557235 4.2:+26692848 None:intergenic
TTTATAGATGGGAAATCCCT+GGG 0.557702 4.2:-26697092 MS.gene067596:intron
ATGGGGTGACACCTAGAAGA+TGG 0.559245 4.2:-26695270 MS.gene067596:CDS
CCTGCCAATGATGGTTCGCA+TGG 0.561781 4.2:-26695535 MS.gene067596:CDS
GTACCACCACTTTATCTGGA+AGG 0.562027 4.2:+26696375 None:intergenic
TACAACTACGACGAATTGAT+GGG 0.563220 4.2:-26692931 MS.gene067596:CDS
GGACTCCCTTCCAGATAAAG+TGG 0.565184 4.2:-26696381 MS.gene067596:CDS
TTGGGAATGGAGGATTAGGC+CGG 0.569055 4.2:-26697417 MS.gene067596:CDS
TGCAACGAATTCATTTGAAG+TGG 0.569514 4.2:+26698365 None:intergenic
AATTTATGATAAGGGAATCA+CGG 0.571565 4.2:+26698232 None:intergenic
CTAGAAAGCAAGAAGCAAGC+CGG 0.574391 4.2:+26697398 None:intergenic
GATGCAGCCCTTGGGAATGG+AGG 0.575620 4.2:-26697427 MS.gene067596:CDS
CGGCAGTTACTGAATATCAT+GGG 0.576863 4.2:-26694144 MS.gene067596:CDS
GAAATTGGCTGTACTTCGCA+AGG 0.577155 4.2:-26695170 MS.gene067596:intron
TCTGTGTGTTTAGTACAGCT+GGG 0.577930 4.2:-26693419 MS.gene067596:intron
GGCCAGATGGAGCTAAGCAA+TGG 0.578954 4.2:-26697012 MS.gene067596:CDS
GTTGCAAAGTAAGCCTTACT+GGG 0.579338 4.2:+26698267 None:intergenic
TTGGAAGGGAATGAAGGCTA+TGG 0.582974 4.2:-26692904 MS.gene067596:CDS
TTTATTATTTCCACATGTCG+AGG 0.583310 4.2:+26696025 None:intergenic
CAACATATGTTCAAGCCAAG+AGG 0.583384 4.2:-26694023 MS.gene067596:CDS
TATGGACTTAGATACAGGTA+TGG 0.584953 4.2:-26697340 MS.gene067596:CDS
CGACGAAGAAGAAGATGTAG+TGG 0.585058 4.2:-26695640 MS.gene067596:CDS
AGGATATTAATAGATGTGAA+GGG 0.588908 4.2:-26696308 MS.gene067596:CDS
TAGGGAAGTCCTTGCCAACA+AGG 0.589757 4.2:+26692866 None:intergenic
GCTGAGGCTCTGAGGAAACT+GGG 0.590579 4.2:-26697993 MS.gene067596:CDS
GGATTTACTTCCTCGACATG+TGG 0.591364 4.2:-26696035 MS.gene067596:CDS
GACGAAGAAGAAGATGTAGT+GGG 0.591470 4.2:-26695639 MS.gene067596:CDS
GTTTAGTACAGCTGGGATGG+AGG 0.592504 4.2:-26693412 MS.gene067596:intron
TCGTTTCTCTGAATTTCCCA+GGG 0.593399 4.2:+26697076 None:intergenic
TTATCTATACCTAATGTGCT+GGG 0.596409 4.2:+26693516 None:intergenic
CAACATATGAATATTATGAG+AGG 0.596709 4.2:-26698203 MS.gene067596:CDS
TCTTGCCGATGATCCTGTTG+AGG 0.596729 4.2:-26695736 MS.gene067596:CDS
GCCTAATCCTCCATTCCCAA+GGG 0.606925 4.2:+26697420 None:intergenic
AGGGTAATTCAGTGTTGCCA+AGG 0.609943 4.2:+26697372 None:intergenic
TAAGTCCATATCCCCATGCA+GGG 0.610745 4.2:+26697353 None:intergenic
AATTGATGGGATCTTTGGAA+GGG 0.613386 4.2:-26692918 MS.gene067596:CDS
GTCCTTATGCTGAGGCTCTG+AGG 0.613621 4.2:-26698001 MS.gene067596:CDS
TGAAAAGAGATCAGGAATGA+CGG 0.617393 4.2:-26696411 MS.gene067596:CDS
TATAACGAAGGACGGTCAGG+AGG 0.619104 4.2:-26697302 MS.gene067596:CDS
TGTCATGAAGAATGCAGAGA+AGG 0.620102 4.2:-26696831 MS.gene067596:intron
AGGTGAGCTTGAATGCCTGC+AGG 0.620576 4.2:+26699550 None:intergenic
CACGAGCTGAAGAAATTGCA+GGG 0.620721 4.2:-26693269 MS.gene067596:CDS
AACATATGAATATTATGAGA+GGG 0.623422 4.2:-26698202 MS.gene067596:CDS
GATTTGGAATGGGAATGTAA+AGG 0.624865 4.2:+26699530 None:intergenic
AATGAAAGAATTGAGTGCTG+AGG 0.627614 4.2:-26694100 MS.gene067596:CDS
GGAGCTAAGCAATGGACTGG+AGG 0.628655 4.2:-26697004 MS.gene067596:CDS
TGCAATGATATCCTGGAGAG+AGG 0.629144 4.2:+26696439 None:intergenic
ATTCAAACAACGTATAACGA+AGG 0.632464 4.2:-26697314 MS.gene067596:CDS
ACAGCTGGGATGGAGGCCAG+TGG 0.632889 4.2:-26693405 MS.gene067596:CDS
GTGCAAATTGGAACTCTCGA+TGG 0.634864 4.2:-26693348 MS.gene067596:CDS
GTGCCAAGAGGAAGTTGACA+AGG 0.636085 4.2:-26692833 MS.gene067596:CDS
TTTGAAGGCTTTCAATACTG+GGG 0.639183 4.2:-26696873 MS.gene067596:CDS
CCACAATCGCAAGTTTATGG+TGG 0.645345 4.2:+26696925 None:intergenic
ATGGATTGGAACAGAAGACT+GGG 0.645354 4.2:-26695206 MS.gene067596:CDS
TATTGGAACATCATAAGCAA+CGG 0.649331 4.2:+26696967 None:intergenic
ACTCTCAGGTCCTTATGCTG+AGG 0.656696 4.2:-26698009 MS.gene067596:CDS
ATTCCAGAATAAAACAAATG+GGG 0.658074 4.2:-26695287 MS.gene067596:CDS
AAACAACGTATAACGAAGGA+CGG 0.658557 4.2:-26697310 MS.gene067596:CDS
TGTTGCCAGCGACAAAGCAG+CGG 0.667849 4.2:-26699414 MS.gene067596:CDS
CAACAAGGAAATAATCAGCA+CGG 0.670194 4.2:+26692881 None:intergenic
TAGCTACTTGGAGTGCCAAG+AGG 0.674127 4.2:-26692845 MS.gene067596:CDS
GTGCCTCTGGTAGAACTGTG+TGG 0.675525 4.2:+26696086 None:intergenic
ATGAGGATCTGCAATCAGAG+TGG 0.676696 4.2:-26694899 MS.gene067596:CDS
ACACTGAATTACCCTGCATG+GGG 0.680238 4.2:-26697364 MS.gene067596:CDS
CTCCCTTCCAGATAAAGTGG+TGG 0.681896 4.2:-26696378 MS.gene067596:CDS
AGTTGCTGAAAACTGGCTTG+AGG 0.695370 4.2:-26697278 MS.gene067596:intron
AAAGAACGACTCATTGGACA+AGG 0.698404 4.2:-26699386 MS.gene067596:intron
AAACCACACAGTTCTACCAG+AGG 0.720864 4.2:-26696089 MS.gene067596:CDS
CTGTTACATTCTATACCCTG+GGG 0.720986 4.2:-26696519 MS.gene067596:CDS
ACGAAGAAGAAGATGTAGTG+GGG 0.722856 4.2:-26695638 MS.gene067596:CDS
GCAAATTGGAACTCTCGATG+GGG 0.738537 4.2:-26693346 MS.gene067596:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content


Chromosome Type Strat End Strand Name
chr4.2 gene 26692368 26699597 26692368 ID=MS.gene067596
chr4.2 mRNA 26692368 26699597 26692368 ID=MS.gene067596.t1;Parent=MS.gene067596
chr4.2 exon 26699387 26699597 26699387 ID=MS.gene067596.t1.exon1;Parent=MS.gene067596.t1
chr4.2 CDS 26699387 26699597 26699387 ID=cds.MS.gene067596.t1;Parent=MS.gene067596.t1
chr4.2 exon 26698158 26698390 26698158 ID=MS.gene067596.t1.exon2;Parent=MS.gene067596.t1
chr4.2 CDS 26698158 26698390 26698158 ID=cds.MS.gene067596.t1;Parent=MS.gene067596.t1
chr4.2 exon 26697965 26698066 26697965 ID=MS.gene067596.t1.exon3;Parent=MS.gene067596.t1
chr4.2 CDS 26697965 26698066 26697965 ID=cds.MS.gene067596.t1;Parent=MS.gene067596.t1
chr4.2 exon 26697279 26697455 26697279 ID=MS.gene067596.t1.exon4;Parent=MS.gene067596.t1
chr4.2 CDS 26697279 26697455 26697279 ID=cds.MS.gene067596.t1;Parent=MS.gene067596.t1
chr4.2 exon 26696832 26697107 26696832 ID=MS.gene067596.t1.exon5;Parent=MS.gene067596.t1
chr4.2 CDS 26696832 26697107 26696832 ID=cds.MS.gene067596.t1;Parent=MS.gene067596.t1
chr4.2 exon 26696272 26696543 26696272 ID=MS.gene067596.t1.exon6;Parent=MS.gene067596.t1
chr4.2 CDS 26696272 26696543 26696272 ID=cds.MS.gene067596.t1;Parent=MS.gene067596.t1
chr4.2 exon 26696009 26696126 26696009 ID=MS.gene067596.t1.exon7;Parent=MS.gene067596.t1
chr4.2 CDS 26696009 26696126 26696009 ID=cds.MS.gene067596.t1;Parent=MS.gene067596.t1
chr4.2 exon 26695440 26695889 26695440 ID=MS.gene067596.t1.exon8;Parent=MS.gene067596.t1
chr4.2 CDS 26695440 26695889 26695440 ID=cds.MS.gene067596.t1;Parent=MS.gene067596.t1
chr4.2 exon 26695171 26695323 26695171 ID=MS.gene067596.t1.exon9;Parent=MS.gene067596.t1
chr4.2 CDS 26695171 26695323 26695171 ID=cds.MS.gene067596.t1;Parent=MS.gene067596.t1
chr4.2 exon 26694803 26694931 26694803 ID=MS.gene067596.t1.exon10;Parent=MS.gene067596.t1
chr4.2 CDS 26694803 26694931 26694803 ID=cds.MS.gene067596.t1;Parent=MS.gene067596.t1
chr4.2 exon 26693954 26694190 26693954 ID=MS.gene067596.t1.exon11;Parent=MS.gene067596.t1
chr4.2 CDS 26693954 26694190 26693954 ID=cds.MS.gene067596.t1;Parent=MS.gene067596.t1
chr4.2 exon 26693526 26693602 26693526 ID=MS.gene067596.t1.exon12;Parent=MS.gene067596.t1
chr4.2 CDS 26693526 26693602 26693526 ID=cds.MS.gene067596.t1;Parent=MS.gene067596.t1
chr4.2 exon 26693242 26693428 26693242 ID=MS.gene067596.t1.exon13;Parent=MS.gene067596.t1
chr4.2 CDS 26693242 26693428 26693242 ID=cds.MS.gene067596.t1;Parent=MS.gene067596.t1
chr4.2 exon 26692816 26693016 26692816 ID=MS.gene067596.t1.exon14;Parent=MS.gene067596.t1
chr4.2 CDS 26692816 26693016 26692816 ID=cds.MS.gene067596.t1;Parent=MS.gene067596.t1
chr4.2 exon 26692368 26692484 26692368 ID=MS.gene067596.t1.exon15;Parent=MS.gene067596.t1
chr4.2 CDS 26692368 26692484 26692368 ID=cds.MS.gene067596.t1;Parent=MS.gene067596.t1
Gene Sequence

>MS.gene067596

ATGTCTGCTCTACCATTCTCAACAACCTGCAGGCATTCAAGCTCACCTTTACATTCCCATTCCAAATCAAACATTTGGCAGCGACAAAACAACATTTGGCATTTGTTTGTCATCACAAAGTCAAATTCCAGAAGAGCAATTAGAAAGCTCTATGTGAAGAATGTTGCCAGCGACAAAGCAGCGGAACTGAAAGAACGACTCATTGGACAAGGTTGCTTGCTGGCATTTTCTCTTGTTTTGTGATTCTTTCTTCACTCCACTTCTTTACATTCTAATATATTATTCAGGATATTCATGTTTATAATTTAAATAGTTATATTTTTTTCAGTGAGCCTTGCAAGAGTTTCAGTTTGATGGAAATTTTGCTGGGTTTAATTGGTTACTAGTGCATTTTTTGGAAGGTTCTCAAAAGTAAGGAGTGGGAACCATGGTTTTATGTTAGATTTATATTGAGATAAACTGTCAATGCACATTATAGACGTTGGCTGATTTAGATAGTAGCTTTCTTAAGGTGTGCAGTATAGGCATCGTAACTTATATTGCCACAGGAAGGATGTCACTTAATATCTTTCCATGTAAATTTGGATTAATGGAATCTAGTTGAGGAAATAAAGATTAGTGATTATGGATCATCTCTTGTTTATTAAATCTGAGCTAATATGGCTTATCTATTTATCCCTTTGAAGTTTGTTGGAGGAAATGTAATAACTAAATACGGGAATGTAAAATACATTTCTCCATATTTTTAAAGTTTCAATGTCATAAACATTATATTTTAATGAATTTCGTTTGAAGGTGATGAATCATGATATTAATCTGACTGTTCTAGACTAGTTCGTAGTTGCTAGTTAGTATTGACTATTGAGTTACTCTTTCCCCTAAGACTTGCCTTTATATAAATCAAGTTTCCTTGAATCGTAATGGAACTAATGACAAAACCTCGTAATAGATTGACAATTTTGATTTATTTATTTATTTATTTATTCAGTTAGCAAAAGTAGAAACACATTTAAGCAATATCATAGCTAATACAACAGTGTTCTCTTGAAGTTATAAGGATATTCTAGATTTTTTTTCTTCATATATATATTTTTATATCGAACTCTAAAATCCAAGATTTTTTAGTATTATATCTTACAATAATGTTTTTTTTTTCTTCTGCAAATATGGTCCTAAATATTAATTCCTTATTGGTTAACACTTGCAGGCACCACTTCAAATGAATTCGTTGCAGATTCTGCATCTGTAGCTTCAAGCATAAAATATCATGCTGAGTTCACCACATCTTTTTCTCCTGAGAAATTTGAGCCCAGTAAGGCTTACTTTGCAACTGCAGAGAGTGTCCGTGATTCCCTTATCATAAATTGGAATGCAACATATGAATATTATGAGAGGGTTAATGTTAAGCAAGCTTATTACATGTCTATGGAGTATCTACAGGTTCATATTGGGTTTCCTTTATGAAACACGGGTCATTTTCTTTGCAAATGATTATTAATTTTCATTCCTACATTTTTTCCCAATTGTGAAGGGTAGGGCATTGTTAAATGCAATTGGGAATTTACAACTCTCAGGTCCTTATGCTGAGGCTCTGAGGAAACTGGGTTACAATTTAGAGGATGTGGCTAATCAGGTTTTTTCCTACTATTGTTCTCCTTTGTTGTTGCGGTTTCGGCTTCTGTTAGAAACTTTTACTCTTGTTACAATTTCTGTTTATCAAATAGTCCTCCTGGTAGCATGTAACAATAAGTTGAACTGGACTAATCCCTTTCTGTCCATTTCACAAAATTGTTATCTGTCATCTTGAGGATGCCAAATATTATAGTACAATGTATCTCTTATAGGCTTTCTATTGACAACAAAGATTAGGTCCATATTTGAACCAAGATTGTTACATGTTTGTTTAATGGAAAAAAGTGAGAATATTGTTAGGAAACAAGCAAGCATTCCTTCAAAAAAAAAAAAAAAGCAAGCATGTTTAAGAGTAAAATGTCTTCATTCGTGTGGAAACATACTAATGAAGGACCAAGAAAAACTACAAGAAAAACACAAACAGTTCACGAATGAAATGATAGTAATATGGATAGATTGCAAAGAATTAATCTGAGCATATTTAAAAGCAAACTCACATACAATTCACAGGAGCCAGATGCAGCCCTTGGGAATGGAGGATTAGGCCGGCTTGCTTCTTGCTTTCTAGACTCCTTGGCAACACTGAATTACCCTGCATGGGGATATGGACTTAGATACAGGTATGGTTTATTCAAACAACGTATAACGAAGGACGGTCAGGAGGAAGTTGCTGAAAACTGGCTTGAGGTACTGCTTATATGGATATTCGATAATTATCAATTGTAAGCCAATTTTCATATTATTGCTGCCTATGCAGGCGTGCTTGTTCTTTTAATTGTTCTTTCTTCTATCACTCTTTTTGGAAGCTCTGTAAGTTCTTCTGCAGAGATATTAACTGACTGACGTGTCTATTTATAGATGGGAAATCCCTGGGAAATTCAGAGAAACGATGTCTCTTATCCAGTTAGATTCTATGGAGAAGTTATTTCAGGGCCAGATGGAGCTAAGCAATGGACTGGAGGAGAAAGTATTTTGGCCGTTGCTTATGATGTTCCAATACCTGGATACAAAACTAGAACCACCATAAACTTGCGATTGTGGTCCACTAAAGTTTCAACTAAAGAATTTGATTTGAAGGCTTTCAATACTGGGGATCATGCCAAAGCATACGCTGTCATGAAGAATGCAGAGAAGGTTTGTGGAAGCCTTGTTTCTTTGTGGTCCTTACACCTGCATCTAAGTTCAGTGTCTTCTTCAAAAGTACTTTCTGGAAGATTCAAAATATCCACTACTGAGCTTAGAATGTATTGCATGAATATGACGAAAACCTTATTCTCTTGCTTCAAATTGTAGTGGTACCTATATCTCAGATATAAATCATCGGAGAAGTTTTTTTTCATTTATGGAAAGTAAATTCAGTTTACTGTTTTCATGAATCATTTGTGATGCAAATTTATTTCTTTTAATATTTGTTGTAATCAGATCTGTTACATTCTATACCCTGGGGATGAATCAATAGAAGGCAAGACTTTACGACTAAAGCAACAATATACATTATGCTCAGCCTCTCTCCAGGATATCATTGCACGCTTTGAAAAGAGATCAGGAATGACGGTAAATTGGGACTCCCTTCCAGATAAAGTGGTGGTACAAATGAATGATACTCACCCAACACTCTGCATTCCTGAGCTGATTAGGATATTAATAGATGTGAAGGGTTTAAGCTGGGAGAAAGCTTGGGATATTACTAAAAGGTGTTTCTTTTTGCATTAACTCTATATCCAATTTATATTTAAAAGATATCAAGCCATTATTAGAGCTACTCTAATAACAACGTTTTAACTACTGCTTTGATCTTTACACTTAGTTTGATCTCTCTTTTAATGGCTCTTCTGTTAGAACGGTTGCTTACACAAACCACACAGTTCTACCAGAGGCACTAGAGAAATGGAGTTTGACTCTTCTGCAGGATTTACTTCCTCGACATGTGGAAATAATAAAAAAGATAGATGAGGAGGTAAGGTTGTAATGTTTATTTGGCTTTAATGTTAAAATTATTCTTATTTCATATGTCCATCTACACGGTCTTCTTTATGAACTTTATATAATGTTTTGTATCTTTGTTTTGTTAACCAGTTTACACATGAAGTTGTTTCTGAGTCTGGGACAAATGATCTTAACATGCTGCAAGAAAAGCTCAGAAAGATGAGAATACTAGAGAATATTGAGTTGCCGGATTCGGTGGTTGAGTTTATTAATAATAAAGTTCTTGCCGATGATCCTGTTGAGGAAATTGATGTTGATGATAATGATATAAAGGCAACAGAAAAGAAAGATAATGAAGAACAAAATGATGATGACGACGACGAAGAAGAAGATGTAGTGGGGAAAGACGAACAAGAAGCAGATGATGATGAAGAGCTTGTTGTAGAGAACAAAAAAGAATGGAAATTCGAAGTTGATCCAAACCTGCCAATGATGGTTCGCATGGCTAACCTATGTGTTGTTGGTGGTTTTTCTGTGAACGGGGTAGCTGAGATTCACAGTGAGATTGTAAAAGAGGAAGTTTTTCATGAATTTTACGAGGTATCAAAATCAGCAGATTCTTTTTACGTTAATATGAACAATTTTTATTGCAATTACTGGTATATACATCCATCAAATGTGATATTCATTAATTTTCTCTGTCATTGATTTGACAGTTCTGGCCTGAGAAATTCCAGAATAAAACAAATGGGGTGACACCTAGAAGATGGATCCGTTTCTGTAATCCTGACCTTAGTAAAATAATAACCAAATGGATTGGAACAGAAGACTGGGTAACAGATCTTGAGAAATTGGCTGTACTTCGCAAGGTAAATGAATTTAACTGAGCATTCTGAATGATATTTGAATTAAATAATTTATATGCAACAACTTCCACAGTTGGCTAGTGAGTACATATGCATGATTAGTCACATTATAATGTCAAAATGGCAGCAAGCATTATAGGCGACTCCTTAGTTGAATGTCACTTCACAATTTTTTTTGCACAAAATCTATGTGTTCTTTTGTTCCTTTATATTTTTCCTTTATAGATACATTTTTCTACCAGTTTGCAGATAATGAGGATCTGCAATCAGAGTGGATAGAATCAAAAAGGAGAAACAAGATTAACGTTGCATCATTTATCAAAGAGAAAACAGGTTATGTTGTCAGTCCAGATGCAATGTTTGATGTACAGGTTAGGTTTCTGCCATCAAGAACTACATTTCCTTCTTCTCGTGTTTAGTTAGCATCTGAATAATAGCAGTGCTGGAAATGTTTCATGTCTGGAGTGTTTATTTTCACCTTTTCAAGGAATGAACATTTGTTCTTTGGTTCTTGCTCCTAAAACAACTTACGCATACATAACTCATAAAAAAGTTCATTTTTTTATAGTTAAATAGATTTAGAATCCTGTGTAAAACTTACACAATGAGGATCAGCATCATCCATCTCTAATGTTATAGAAATCCTTGTAACATTATACGGTCTCACTATTTGCTGCATAGGAGAAGGGACAGTGCTCTGTATTATACTATTATTAGCTAAAAATTCCTATGCTGTAAAATAACATCACCCCTTTATGATGGATTCTTAAATACTATATGTTACAGTGTTGTCAAATATCGGCCATGACGGATTGCACATTTACTTATTGTGTAAAACCAAGATCCAATAAATAACAGCTGAATAGATAAAAGGCTAACATGAAATCGTACTTGGGAAAATGGGACAACCATTAAAATTCCAATGGCATGTTGTTTTACACCCTCAATTCATGGTTAATGATAAATGGCATATCTATTGTCAGGTCAAGCGTATTCATGAATACAAACGGCAGTTACTGAATATCATGGGAATTGTTTATCGCTACAAGAAAATGAAAGAATTGAGTGCTGAGGAAAGAAAACAATTGTTTGTTCCTCGGGTTTGTATTTTTGGAGGGAAAGCATTTGCAACATATGTTCAAGCCAAGAGGATTGTAAAATTCATCACAGATGTAGGAGCTACAGTTAATCACGATCCAGAGATTGGAGATCTTTTGAAGGTATCAGTCAAACTTGGGTGATAGATAAACACATTATGGTCGTTCCAAAAATTTGGTTGCTTACGCCTTTTGATGTTTAAATAACAATTTGTTTGCTTTATCTGAAGTAGAACTTTGGAAAATGTTTAATTCCAGGGACAAATCCCAGTAGTTAAATAAATGAATATCTCAACAAAAATGGACTGAAGTAATTGACAAATTTATGTTATTCTTCATACATAACAGCATGTGGCCTCAGCTGCAGAAAAATAAAATTATAGGATGTTAGCTGAAAGCTGATAAAGGGTGTTAAACTAGCATCTTTTTCTACTTAGTCATAAAACAGATCCTGGTTCTTGTCTTAACTTGCAGGTTATATTTGTTCCTGATTACAATGTTAGTGTTGCTGAAATGCTAATTCCTGGCAGTGAATTGTCCCAGCACATTAGGTATAGATAAATATATTTTTTAAAACAAATGCTTTACATTTTGTTTACAATCATTGTTATCAGTTTTTGTTTGACTTATCTTTTTCTGTGTGTTTAGTACAGCTGGGATGGAGGCCAGTGGAACAAGCAACATGAAATTTGCAATGAATGGATGTGTGCAAATTGGAACTCTCGATGGGGCTAATGTTGAAATAAGAGAAGAAGTTGGAGAAGACAACTTCTTTCTTTTTGGCGCACGAGCTGAAGAAATTGCAGGGTTAAGGAAAGAAAGAGCAGAAGGAAAGGTAAGTTCTTAAAATCAGAATACTTGGTTCAATGCAATAATTCCTTTTCCTTCTTGTTTTTCTTTCATACACTTTGCTTTTCATATCAGTGGCAATAACAATTGCTTAAACAAGCTCAAATAAAATGTGGCTTCTATAGATCCTTTAAGGCATTGTTAAGTCCAAGCCAACAGAATTATGTATCATAATCTCAATATAATGTGGTCTGTTGTATGATATATGCAGTTTGTACCAGACCCAAGGTTTGAAGAAGTAAAGGCATATGTTAGAAGTGGTGTTTTTGGCACCTACAACTACGACGAATTGATGGGATCTTTGGAAGGGAATGAAGGCTATGGCCGTGCTGATTATTTCCTTGTTGGCAAGGACTTCCCTAGCTACTTGGAGTGCCAAGAGGAAGTTGACAAGGCATACCGTGATCAAAAAGTAAGTAACATCAAGTCATGGACAAAACATGATATTTCGTCTATTACGTTCTTGTCGAATTCATTATGAAAATTAAAACTACAAGCTTTCCGCAATTCTTTTTGGATGAATTTCTCAGGCACATCATATTCATACCTGTGTTGAACACAAGTTGCCTCAACTGGTAATGAATGAAATTAGAAAATAGCAATCATTTCATACGTTTCTGAATTTTAATACATATTGTTTAATGCATAATGCATAGGTATTTATGCAAGTTATTATACGAACCATGGCATATGTATTGCTTATGTAGCGATCTAAAAGAACTGATTGATGTGTGTTGGTGCAGAAATGGACAAGAATGTCAATCTTGAACACAGCTGGTTCGTATAAATTCAGCAGTGACCGGACTATTCATGAATATGCCAGAGATATATGGAGAATTGAGCCAGTTGTATTGCCTTGA

Protein sequence

>MS.gene067596.t1

MSALPFSTTCRHSSSPLHSHSKSNIWQRQNNIWHLFVITKSNSRRAIRKLYVKNVASDKAAELKERLIGQGTTSNEFVADSASVASSIKYHAEFTTSFSPEKFEPSKAYFATAESVRDSLIINWNATYEYYERVNVKQAYYMSMEYLQGRALLNAIGNLQLSGPYAEALRKLGYNLEDVANQEPDAALGNGGLGRLASCFLDSLATLNYPAWGYGLRYRYGLFKQRITKDGQEEVAENWLEMGNPWEIQRNDVSYPVRFYGEVISGPDGAKQWTGGESILAVAYDVPIPGYKTRTTINLRLWSTKVSTKEFDLKAFNTGDHAKAYAVMKNAEKICYILYPGDESIEGKTLRLKQQYTLCSASLQDIIARFEKRSGMTVNWDSLPDKVVVQMNDTHPTLCIPELIRILIDVKGLSWEKAWDITKRTVAYTNHTVLPEALEKWSLTLLQDLLPRHVEIIKKIDEEFTHEVVSESGTNDLNMLQEKLRKMRILENIELPDSVVEFINNKVLADDPVEEIDVDDNDIKATEKKDNEEQNDDDDDEEEDVVGKDEQEADDDEELVVENKKEWKFEVDPNLPMMVRMANLCVVGGFSVNGVAEIHSEIVKEEVFHEFYEFWPEKFQNKTNGVTPRRWIRFCNPDLSKIITKWIGTEDWVTDLEKLAVLRKFADNEDLQSEWIESKRRNKINVASFIKEKTGYVVSPDAMFDVQVKRIHEYKRQLLNIMGIVYRYKKMKELSAEERKQLFVPRVCIFGGKAFATYVQAKRIVKFITDVGATVNHDPEIGDLLKVIFVPDYNVSVAEMLIPGSELSQHISTAGMEASGTSNMKFAMNGCVQIGTLDGANVEIREEVGEDNFFLFGARAEEIAGLRKERAEGKFVPDPRFEEVKAYVRSGVFGTYNYDELMGSLEGNEGYGRADYFLVGKDFPSYLECQEEVDKAYRDQKKWTRMSILNTAGSYKFSSDRTIHEYARDIWRIEPVVLP