AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene067599


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene067599.t1 MTR_4g082950 95.413 981 30 2 1 966 1 981 0.0 1930
MS.gene067599.t1 MTR_0288s0040 73.918 878 184 9 67 928 44 892 0.0 1319
MS.gene067599.t1 MTR_3g462340 66.422 408 135 2 559 966 435 840 0.0 584
MS.gene067599.t1 MTR_3g462340 54.212 463 198 4 52 514 20 468 9.86e-167 509
MS.gene067599.t1 MTR_2g014460 51.741 402 185 5 566 966 595 988 3.12e-131 421
MS.gene067599.t1 MTR_2g014460 49.742 388 183 5 94 478 210 588 3.52e-116 380
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene067599.t1 AT3G29320 69.831 948 229 6 41 966 50 962 0.0 1369
MS.gene067599.t1 AT3G46970 65.931 408 137 2 559 966 436 841 0.0 585
MS.gene067599.t1 AT3G46970 54.212 463 196 5 54 514 21 469 2.29e-165 506

Find 224 sgRNAs with CRISPR-Local

Find 0 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAGCTTTCTAATTGCTCTTC+TGG 0.206585 4.2:+26713955 None:intergenic
TTCTATGGAGAAGTTATTTC+AGG 0.216727 4.2:-26711542 MS.gene067599:CDS
GATCAGGAATGACGGTAAAT+TGG 0.232719 4.2:-26710911 MS.gene067599:CDS
CGACGAATTGATGGGATCTT+TGG 0.243497 4.2:-26707431 MS.gene067599:CDS
TTCTGTGTGTTTAGTACAGC+TGG 0.244339 4.2:-26707928 MS.gene067599:intron
GATTTGAAGGCTTTCAATAC+TGG 0.245062 4.2:-26711383 MS.gene067599:CDS
GTGATTCCCTTATCATAAAT+TGG 0.247012 4.2:-26712738 MS.gene067599:CDS
TCTTATCCAGTTAGATTCTA+TGG 0.254682 4.2:-26711557 MS.gene067599:CDS
ATTTGTACCACCACTTTATC+TGG 0.266367 4.2:+26710879 None:intergenic
AATTACCCTGCATGGGGATA+TGG 0.274456 4.2:-26711866 MS.gene067599:CDS
GCAAGCTTATTACATGTCTA+TGG 0.286957 4.2:-26712677 MS.gene067599:CDS
TTTAGAGGATGTGGCTAATC+AGG 0.301609 4.2:-26712472 MS.gene067599:intron
TGCATTCCAATTTATGATAA+GGG 0.315129 4.2:+26712732 None:intergenic
GGACCACAATCGCAAGTTTA+TGG 0.317000 4.2:+26711430 None:intergenic
GGTAACAGATCTTGAGAAAT+TGG 0.317053 4.2:-26709693 MS.gene067599:CDS
CGAACCATCATTGGCAGGTT+TGG 0.317570 4.2:+26710048 None:intergenic
TGCTGAGGCTCTGAGGAAAC+TGG 0.320911 4.2:-26712502 MS.gene067599:CDS
CATGAAGTTGTTTCTGAGTC+TGG 0.322339 4.2:-26710369 MS.gene067599:CDS
CCCATTCCAAATCAAACATT+TGG 0.324417 4.2:-26714027 MS.gene067599:CDS
ATGAATATGCCAGAGATATA+TGG 0.324624 4.2:-26706903 MS.gene067599:CDS
AACTAAAGAATTTGATTTGA+AGG 0.326464 4.2:-26711396 MS.gene067599:CDS
GACTGGAGGAGAAAGTATTT+TGG 0.328200 4.2:-26711498 MS.gene067599:CDS
CAGAAACGGATCCATCTTCT+AGG 0.345198 4.2:+26709767 None:intergenic
TCGCTGCCAAATGTTTGATT+TGG 0.348700 4.2:+26714021 None:intergenic
TTGCATTCCAATTTATGATA+AGG 0.352440 4.2:+26712731 None:intergenic
AGGGCATTGTTAAATGCAAT+TGG 0.355293 4.2:-26712549 MS.gene067599:CDS
AAGCTTGGGATATTACTAAA+AGG 0.359212 4.2:-26710779 MS.gene067599:intron
TCTGCATTCCTGAGCTGATT+AGG 0.359974 4.2:-26710836 MS.gene067599:CDS
TTCTTTAGTTGAAACTTTAG+TGG 0.365317 4.2:+26711409 None:intergenic
CAGTTCCGCTGCTTTGTCGC+TGG 0.365462 4.2:+26713916 None:intergenic
GTCTTCTGTTCCAATCCATT+TGG 0.366997 4.2:+26709718 None:intergenic
CAAGGACTTCCCTAGCTACT+TGG 0.367893 4.2:-26707365 MS.gene067599:CDS
CAGAGTGGATAGAATCAAAA+AGG 0.368398 4.2:-26709392 MS.gene067599:CDS
TTTCATGTTGCTTGTTCCAC+TGG 0.374129 4.2:+26707897 None:intergenic
CCTTCTATTGATTCATCCCC+AGG 0.374631 4.2:+26711011 None:intergenic
CCTTTACTTCTTCAAACCTT+GGG 0.375831 4.2:+26707491 None:intergenic
ATGAATGGATGTGTGCAAAT+TGG 0.376874 4.2:-26707868 MS.gene067599:CDS
ACTAGAGAATATTGAGTTGC+CGG 0.377955 4.2:-26710298 MS.gene067599:CDS
AGGAGGAAGTTGCTGAAAAC+TGG 0.381174 4.2:-26711793 MS.gene067599:CDS
GGCAGCGACAAAACAACATT+TGG 0.381599 4.2:-26714006 MS.gene067599:CDS
ACTTCTCCATAGAATCTAAC+TGG 0.381745 4.2:+26711551 None:intergenic
CTGAAGAAATTGCAGGGTTA+AGG 0.382529 4.2:-26707771 MS.gene067599:CDS
GAATATTGAGTTGCCGGATT+CGG 0.385197 4.2:-26710292 MS.gene067599:CDS
GAAACTGGGTTACAATTTAG+AGG 0.387483 4.2:-26712487 MS.gene067599:CDS
CCATTCCCAAGGGCTGCATC+TGG 0.392098 4.2:+26711938 None:intergenic
TGTTGATGATAATGATATAA+AGG 0.401976 4.2:-26710214 MS.gene067599:CDS
CATCAATTCGTCGTAGTTGT+AGG 0.404593 4.2:+26707441 None:intergenic
TTCTTGCTTTCTAGACTCCT+TGG 0.404594 4.2:-26711897 MS.gene067599:CDS
AAAACAATTGTTTGTTCCTC+GGG 0.409628 4.2:-26708581 MS.gene067599:CDS
AGATGCAATGTTTGATGTAC+AGG 0.409770 4.2:-26709310 MS.gene067599:intron
TTTATCTATACCTAATGTGC+TGG 0.410380 4.2:+26708023 None:intergenic
GAAAACAATTGTTTGTTCCT+CGG 0.412817 4.2:-26708582 MS.gene067599:CDS
CGTGCTGATTATTTCCTTGT+TGG 0.415896 4.2:-26707388 MS.gene067599:CDS
ATCAGGAATGACGGTAAATT+GGG 0.418725 4.2:-26710910 MS.gene067599:CDS
CTCCATTTCTCTAGTGCCTC+TGG 0.422856 4.2:+26710581 None:intergenic
TTCAAAAGATCTCCAATCTC+TGG 0.423187 4.2:+26708463 None:intergenic
GTGAATTGTCCCAGCACATT+AGG 0.424344 4.2:-26708033 MS.gene067599:intron
ACTTCTTCAAACCTTGGGTC+TGG 0.424710 4.2:+26707496 None:intergenic
CTCAATTCTCCATATATCTC+TGG 0.425589 4.2:+26706894 None:intergenic
GTCCATTGCTTAGCTCCATC+TGG 0.426769 4.2:+26711518 None:intergenic
TCAACATCAATTTCCTCAAC+AGG 0.426786 4.2:+26710231 None:intergenic
CTTCATGACAGCGTATGCTT+TGG 0.427119 4.2:+26711352 None:intergenic
GCCTTTACTTCTTCAAACCT+TGG 0.427852 4.2:+26707490 None:intergenic
CTACAACTACGACGAATTGA+TGG 0.429462 4.2:-26707440 MS.gene067599:CDS
ATAAACTCAACCACCGAATC+CGG 0.430194 4.2:+26710279 None:intergenic
TACCAGAGGCACTAGAGAAA+TGG 0.435864 4.2:-26710583 MS.gene067599:CDS
GTTGAAATAAGAGAAGAAGT+TGG 0.438273 4.2:-26707826 MS.gene067599:CDS
GTTAATCACGATCCAGAGAT+TGG 0.440645 4.2:-26708475 MS.gene067599:CDS
AAATTCCAGAATAAAACAAA+TGG 0.446135 4.2:-26709797 MS.gene067599:CDS
GTTTAAGCTGGGAGAAAGCT+TGG 0.447465 4.2:-26710794 MS.gene067599:CDS
GCTCAGGAATGCAGAGTGTT+GGG 0.447491 4.2:+26710844 None:intergenic
CCAAATGTTTGATTTGGAAT+GGG 0.448607 4.2:+26714027 None:intergenic
ATTTGAAGGCTTTCAATACT+GGG 0.449329 4.2:-26711382 MS.gene067599:CDS
GCACGAGCTGAAGAAATTGC+AGG 0.449587 4.2:-26707778 MS.gene067599:CDS
ATGGAGTTTGACTCTTCTGC+AGG 0.451498 4.2:-26710564 MS.gene067599:CDS
TCACAGTGAGATTGTAAAAG+AGG 0.453012 4.2:-26709971 MS.gene067599:CDS
AATTCCAGAATAAAACAAAT+GGG 0.455147 4.2:-26709796 MS.gene067599:CDS
AACATGAAATTTGCAATGAA+TGG 0.455487 4.2:-26707883 MS.gene067599:CDS
TAGATGTGAAGGGTTTAAGC+TGG 0.457167 4.2:-26710806 MS.gene067599:CDS
ACGTATAACGAAGGACGGTC+AGG 0.458652 4.2:-26711813 MS.gene067599:CDS
GCCCTTGGGAATGGAGGATT+AGG 0.460169 4.2:-26711929 MS.gene067599:CDS
GCAACACTAACATTGTAATC+AGG 0.461165 4.2:+26708076 None:intergenic
ATCGTTTCTCTGAATTTCCC+AGG 0.466281 4.2:+26711583 None:intergenic
TTCCTCAGAGCCTCAGCATA+AGG 0.466595 4.2:+26712507 None:intergenic
ATGCCTTGTCAACTTCCTCT+TGG 0.467018 4.2:+26707338 None:intergenic
CTACCAGTTTGCAGATAATG+AGG 0.467112 4.2:-26709424 MS.gene067599:intron
TCATTTATCAAAGAGAAAAC+AGG 0.468618 4.2:-26709348 MS.gene067599:CDS
CAGGAGCCAGATGCAGCCCT+TGG 0.468994 4.2:-26711944 MS.gene067599:CDS
CCAGATGCAGCCCTTGGGAA+TGG 0.470381 4.2:-26711938 MS.gene067599:CDS
TGTACATCAAACATTGCATC+TGG 0.471752 4.2:+26709312 None:intergenic
GCCAAATGTTTGATTTGGAA+TGG 0.475175 4.2:+26714026 None:intergenic
TTAGCCATGCGAACCATCAT+TGG 0.477716 4.2:+26710039 None:intergenic
CCTGGGGATGAATCAATAGA+AGG 0.480958 4.2:-26711011 MS.gene067599:CDS
GCACGCTTTGAAAAGAGATC+AGG 0.482626 4.2:-26710927 MS.gene067599:CDS
ATTAATATCCTAATCAGCTC+AGG 0.483954 4.2:+26710828 None:intergenic
GTTGCTGAAATGCTAATTCC+TGG 0.484765 4.2:-26708058 MS.gene067599:CDS
TGATTATTTCCTTGTTGGCA+AGG 0.485154 4.2:-26707383 MS.gene067599:CDS
GCTTATGATGTTCCAATACC+TGG 0.487169 4.2:-26711470 MS.gene067599:CDS
GGGCATTGTTAAATGCAATT+GGG 0.488583 4.2:-26712548 MS.gene067599:CDS
GGGTTACAATTTAGAGGATG+TGG 0.490297 4.2:-26712481 MS.gene067599:CDS
ATTGGGAATTTACAACTCTC+AGG 0.491640 4.2:-26712531 MS.gene067599:CDS
AGCTCAGGAATGCAGAGTGT+TGG 0.492601 4.2:+26710843 None:intergenic
AAAATAATAACCAAATGGAT+TGG 0.492703 4.2:-26709728 MS.gene067599:CDS
CCATGCGAACCATCATTGGC+AGG 0.495713 4.2:+26710043 None:intergenic
GTAAAATTCATCACAGATGT+AGG 0.497209 4.2:-26708505 MS.gene067599:CDS
CATGTCTATGGAGTATCTAC+AGG 0.498390 4.2:-26712665 MS.gene067599:intron
TGATCCAAACCTGCCAATGA+TGG 0.501005 4.2:-26710052 MS.gene067599:CDS
ACGGCAGTTACTGAATATCA+TGG 0.501069 4.2:-26708653 MS.gene067599:CDS
TGCTGGGACAATTCACTGCC+AGG 0.501865 4.2:+26708040 None:intergenic
CCCAAGGTTTGAAGAAGTAA+AGG 0.502177 4.2:-26707491 MS.gene067599:CDS
GAAAGAAAGAGCAGAAGGAA+AGG 0.502282 4.2:-26707749 MS.gene067599:intron
TCTGTTACATTCTATACCCT+GGG 0.504284 4.2:-26711028 MS.gene067599:CDS
GAACTGAAAGAACGACTCAT+TGG 0.504413 4.2:-26713899 MS.gene067599:CDS
ATGGCTAACCTATGTGTTGT+TGG 0.505350 4.2:-26710024 MS.gene067599:CDS
TCTTGGCACTCCAAGTAGCT+AGG 0.505786 4.2:+26707355 None:intergenic
TTTAAGCTGGGAGAAAGCTT+GGG 0.507352 4.2:-26710793 MS.gene067599:CDS
GGGGATATGGACTTAGATAC+AGG 0.507764 4.2:-26711853 MS.gene067599:CDS
TAGGATATTAATAGATGTGA+AGG 0.509727 4.2:-26710817 MS.gene067599:CDS
ATGTCAATCTTGAACACAGC+TGG 0.511229 4.2:-26706958 MS.gene067599:CDS
CAAAGCGTGCAATGATATCC+TGG 0.512626 4.2:+26710940 None:intergenic
TGCAAATTGGAACTCTCGAT+GGG 0.513093 4.2:-26707855 MS.gene067599:CDS
TTAGTAAAATAATAACCAAA+TGG 0.516483 4.2:-26709733 MS.gene067599:CDS
AACACTGAATTACCCTGCAT+GGG 0.518781 4.2:-26711873 MS.gene067599:CDS
ATTTATAGATGGGAAATCCC+TGG 0.520518 4.2:-26711601 MS.gene067599:intron
CGTATAAATTCAGCAGTGAC+CGG 0.523558 4.2:-26706933 MS.gene067599:CDS
TCTATGGAGAAGTTATTTCA+GGG 0.524340 4.2:-26711541 MS.gene067599:CDS
ATCTGTTACATTCTATACCC+TGG 0.525611 4.2:-26711029 MS.gene067599:CDS
CAACACTGAATTACCCTGCA+TGG 0.525876 4.2:-26711874 MS.gene067599:CDS
AATGGATTGGAACAGAAGAC+TGG 0.527079 4.2:-26709715 MS.gene067599:CDS
ATGAAGTTGTTTCTGAGTCT+GGG 0.528015 4.2:-26710368 MS.gene067599:CDS
TACCATTCTCAACAACCTGC+AGG 0.529812 4.2:-26714072 MS.gene067599:CDS
TACCACCACTTTATCTGGAA+GGG 0.530834 4.2:+26710884 None:intergenic
AGCGTATTCATGAATACAAA+CGG 0.531740 4.2:-26708672 MS.gene067599:CDS
TAAGGTCAGGATTACAGAAA+CGG 0.536410 4.2:+26709753 None:intergenic
AGGAGCCAGATGCAGCCCTT+GGG 0.536797 4.2:-26711943 MS.gene067599:CDS
TGTGTTTAGTACAGCTGGGA+TGG 0.537168 4.2:-26707923 MS.gene067599:intron
TATTGAGTTGCCGGATTCGG+TGG 0.537392 4.2:-26710289 MS.gene067599:CDS
GCTAACCTATGTGTTGTTGG+TGG 0.537986 4.2:-26710021 MS.gene067599:CDS
TGGCATATTCATGAATAGTC+CGG 0.538204 4.2:+26706914 None:intergenic
CCACCATAAACTTGCGATTG+TGG 0.538883 4.2:-26711433 MS.gene067599:CDS
GAATTGATGGGATCTTTGGA+AGG 0.539315 4.2:-26707427 MS.gene067599:CDS
CTAAGTCCATATCCCCATGC+AGG 0.541539 4.2:+26711860 None:intergenic
GGATCTTTGGAAGGGAATGA+AGG 0.543201 4.2:-26707418 MS.gene067599:CDS
GGCCTAATCCTCCATTCCCA+AGG 0.543436 4.2:+26711927 None:intergenic
TGCCTGCAGGTTGTTGAGAA+TGG 0.544681 4.2:+26714070 None:intergenic
TTAAGGAAAGAAAGAGCAGA+AGG 0.545172 4.2:-26707754 MS.gene067599:CDS
CTTCTATTGATTCATCCCCA+GGG 0.545352 4.2:+26711012 None:intergenic
AATTTCCTCAACAGGATCAT+CGG 0.550548 4.2:+26710239 None:intergenic
AGATGTGAAGGGTTTAAGCT+GGG 0.551577 4.2:-26710805 MS.gene067599:CDS
TGCAGTTTGTACCAGACCCA+AGG 0.553369 4.2:-26707507 MS.gene067599:intron
GATGGAGCTAAGCAATGGAC+TGG 0.553513 4.2:-26711515 MS.gene067599:CDS
GAAGTTATTTCAGGGCCAGA+TGG 0.555318 4.2:-26711533 MS.gene067599:CDS
GTAAAGGCATATGTTAGAAG+TGG 0.555712 4.2:-26707475 MS.gene067599:CDS
ATTATGCTCAGCCTCTCTCC+AGG 0.555876 4.2:-26710958 MS.gene067599:CDS
CTTGGCACTCCAAGTAGCTA+GGG 0.557235 4.2:+26707356 None:intergenic
TTTATAGATGGGAAATCCCT+GGG 0.557702 4.2:-26711600 MS.gene067599:intron
ATGGGGTGACACCTAGAAGA+TGG 0.559245 4.2:-26709778 MS.gene067599:CDS
CCTGCCAATGATGGTTCGCA+TGG 0.561781 4.2:-26710043 MS.gene067599:CDS
GTACCACCACTTTATCTGGA+AGG 0.562027 4.2:+26710883 None:intergenic
TACAACTACGACGAATTGAT+GGG 0.563220 4.2:-26707439 MS.gene067599:CDS
GGACTCCCTTCCAGATAAAG+TGG 0.565184 4.2:-26710889 MS.gene067599:CDS
TTGGGAATGGAGGATTAGGC+CGG 0.569055 4.2:-26711925 MS.gene067599:CDS
TGCAACGAATTCATTTGAAG+TGG 0.569514 4.2:+26712872 None:intergenic
AATTTATGATAAGGGAATCA+CGG 0.571565 4.2:+26712740 None:intergenic
CTAGAAAGCAAGAAGCAAGC+CGG 0.574391 4.2:+26711906 None:intergenic
GATGCAGCCCTTGGGAATGG+AGG 0.575620 4.2:-26711935 MS.gene067599:CDS
CGGCAGTTACTGAATATCAT+GGG 0.576863 4.2:-26708652 MS.gene067599:CDS
GAAATTGGCTGTACTTCGCA+AGG 0.577155 4.2:-26709678 MS.gene067599:intron
TCTGTGTGTTTAGTACAGCT+GGG 0.577930 4.2:-26707927 MS.gene067599:intron
GGCCAGATGGAGCTAAGCAA+TGG 0.578954 4.2:-26711520 MS.gene067599:CDS
TTGGAAGGGAATGAAGGCTA+TGG 0.582974 4.2:-26707412 MS.gene067599:CDS
TTTATTATTTCCACATGTCG+AGG 0.583310 4.2:+26710533 None:intergenic
CAACATATGTTCAAGCCAAG+AGG 0.583384 4.2:-26708531 MS.gene067599:CDS
TATGGACTTAGATACAGGTA+TGG 0.584953 4.2:-26711848 MS.gene067599:CDS
CGACGAAGAAGAAGATGTAG+TGG 0.585058 4.2:-26710148 MS.gene067599:CDS
AGGATATTAATAGATGTGAA+GGG 0.588908 4.2:-26710816 MS.gene067599:CDS
TAGGGAAGTCCTTGCCAACA+AGG 0.589757 4.2:+26707374 None:intergenic
GCTGAGGCTCTGAGGAAACT+GGG 0.590579 4.2:-26712501 MS.gene067599:CDS
GGATTTACTTCCTCGACATG+TGG 0.591364 4.2:-26710543 MS.gene067599:CDS
GACGAAGAAGAAGATGTAGT+GGG 0.591470 4.2:-26710147 MS.gene067599:CDS
GTTTAGTACAGCTGGGATGG+AGG 0.592504 4.2:-26707920 MS.gene067599:intron
TCGTTTCTCTGAATTTCCCA+GGG 0.593399 4.2:+26711584 None:intergenic
TTATCTATACCTAATGTGCT+GGG 0.596409 4.2:+26708024 None:intergenic
CAACATATGAATATTATGAG+AGG 0.596709 4.2:-26712711 MS.gene067599:CDS
TCTTGCCGATGATCCTGTTG+AGG 0.596729 4.2:-26710244 MS.gene067599:CDS
GCCTAATCCTCCATTCCCAA+GGG 0.606925 4.2:+26711928 None:intergenic
AGGGTAATTCAGTGTTGCCA+AGG 0.609943 4.2:+26711880 None:intergenic
TAAGTCCATATCCCCATGCA+GGG 0.610745 4.2:+26711861 None:intergenic
AATTGATGGGATCTTTGGAA+GGG 0.613386 4.2:-26707426 MS.gene067599:CDS
GTCCTTATGCTGAGGCTCTG+AGG 0.613621 4.2:-26712509 MS.gene067599:CDS
TGAAAAGAGATCAGGAATGA+CGG 0.617393 4.2:-26710919 MS.gene067599:CDS
TATAACGAAGGACGGTCAGG+AGG 0.619104 4.2:-26711810 MS.gene067599:CDS
TGTCATGAAGAATGCAGAGA+AGG 0.620102 4.2:-26711339 MS.gene067599:intron
AGGTGAGCTTGAATGCCTGC+AGG 0.620576 4.2:+26714057 None:intergenic
CACGAGCTGAAGAAATTGCA+GGG 0.620721 4.2:-26707777 MS.gene067599:CDS
AACATATGAATATTATGAGA+GGG 0.623422 4.2:-26712710 MS.gene067599:CDS
GATTTGGAATGGGAATGTAA+AGG 0.624865 4.2:+26714037 None:intergenic
AATGAAAGAATTGAGTGCTG+AGG 0.627614 4.2:-26708608 MS.gene067599:CDS
GGAGCTAAGCAATGGACTGG+AGG 0.628655 4.2:-26711512 MS.gene067599:CDS
TGCAATGATATCCTGGAGAG+AGG 0.629144 4.2:+26710947 None:intergenic
ATTCAAACAACGTATAACGA+AGG 0.632464 4.2:-26711822 MS.gene067599:CDS
ACAGCTGGGATGGAGGCCAG+TGG 0.632889 4.2:-26707913 MS.gene067599:CDS
GTGCAAATTGGAACTCTCGA+TGG 0.634864 4.2:-26707856 MS.gene067599:CDS
GTGCCAAGAGGAAGTTGACA+AGG 0.636085 4.2:-26707341 MS.gene067599:CDS
TTTGAAGGCTTTCAATACTG+GGG 0.639183 4.2:-26711381 MS.gene067599:CDS
CCACAATCGCAAGTTTATGG+TGG 0.645345 4.2:+26711433 None:intergenic
ATGGATTGGAACAGAAGACT+GGG 0.645354 4.2:-26709714 MS.gene067599:CDS
TATTGGAACATCATAAGCAA+CGG 0.649331 4.2:+26711475 None:intergenic
ACTCTCAGGTCCTTATGCTG+AGG 0.656696 4.2:-26712517 MS.gene067599:CDS
ATTCCAGAATAAAACAAATG+GGG 0.658074 4.2:-26709795 MS.gene067599:CDS
AAACAACGTATAACGAAGGA+CGG 0.658557 4.2:-26711818 MS.gene067599:CDS
TGTTGCCAGCGACAAAGCAG+CGG 0.667849 4.2:-26713921 MS.gene067599:CDS
CAACAAGGAAATAATCAGCA+CGG 0.670194 4.2:+26707389 None:intergenic
TAGCTACTTGGAGTGCCAAG+AGG 0.674127 4.2:-26707353 MS.gene067599:CDS
GTGCCTCTGGTAGAACTGTG+TGG 0.675525 4.2:+26710594 None:intergenic
ATGAGGATCTGCAATCAGAG+TGG 0.676696 4.2:-26709407 MS.gene067599:CDS
ACACTGAATTACCCTGCATG+GGG 0.680238 4.2:-26711872 MS.gene067599:CDS
CTCCCTTCCAGATAAAGTGG+TGG 0.681896 4.2:-26710886 MS.gene067599:CDS
AGTTGCTGAAAACTGGCTTG+AGG 0.695370 4.2:-26711786 MS.gene067599:intron
AAAGAACGACTCATTGGACA+AGG 0.698404 4.2:-26713893 MS.gene067599:intron
AAACCACACAGTTCTACCAG+AGG 0.720864 4.2:-26710597 MS.gene067599:CDS
CTGTTACATTCTATACCCTG+GGG 0.720986 4.2:-26711027 MS.gene067599:CDS
ACGAAGAAGAAGATGTAGTG+GGG 0.722856 4.2:-26710146 MS.gene067599:CDS
GCAAATTGGAACTCTCGATG+GGG 0.738537 4.2:-26707854 MS.gene067599:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content


Chromosome Type Strat End Strand Name
chr4.2 gene 26706876 26714104 26706876 ID=MS.gene067599
chr4.2 mRNA 26706876 26714104 26706876 ID=MS.gene067599.t1;Parent=MS.gene067599
chr4.2 exon 26713894 26714104 26713894 ID=MS.gene067599.t1.exon1;Parent=MS.gene067599.t1
chr4.2 CDS 26713894 26714104 26713894 ID=cds.MS.gene067599.t1;Parent=MS.gene067599.t1
chr4.2 exon 26712831 26712897 26712831 ID=MS.gene067599.t1.exon2;Parent=MS.gene067599.t1
chr4.2 CDS 26712831 26712897 26712831 ID=cds.MS.gene067599.t1;Parent=MS.gene067599.t1
chr4.2 exon 26712666 26712792 26712666 ID=MS.gene067599.t1.exon3;Parent=MS.gene067599.t1
chr4.2 CDS 26712666 26712792 26712666 ID=cds.MS.gene067599.t1;Parent=MS.gene067599.t1
chr4.2 exon 26712473 26712574 26712473 ID=MS.gene067599.t1.exon4;Parent=MS.gene067599.t1
chr4.2 CDS 26712473 26712574 26712473 ID=cds.MS.gene067599.t1;Parent=MS.gene067599.t1
chr4.2 exon 26711787 26711963 26711787 ID=MS.gene067599.t1.exon5;Parent=MS.gene067599.t1
chr4.2 CDS 26711787 26711963 26711787 ID=cds.MS.gene067599.t1;Parent=MS.gene067599.t1
chr4.2 exon 26711340 26711615 26711340 ID=MS.gene067599.t1.exon6;Parent=MS.gene067599.t1
chr4.2 CDS 26711340 26711615 26711340 ID=cds.MS.gene067599.t1;Parent=MS.gene067599.t1
chr4.2 exon 26710780 26711051 26710780 ID=MS.gene067599.t1.exon7;Parent=MS.gene067599.t1
chr4.2 CDS 26710780 26711051 26710780 ID=cds.MS.gene067599.t1;Parent=MS.gene067599.t1
chr4.2 exon 26710517 26710634 26710517 ID=MS.gene067599.t1.exon8;Parent=MS.gene067599.t1
chr4.2 CDS 26710517 26710634 26710517 ID=cds.MS.gene067599.t1;Parent=MS.gene067599.t1
chr4.2 exon 26709948 26710397 26709948 ID=MS.gene067599.t1.exon9;Parent=MS.gene067599.t1
chr4.2 CDS 26709948 26710397 26709948 ID=cds.MS.gene067599.t1;Parent=MS.gene067599.t1
chr4.2 exon 26709679 26709831 26709679 ID=MS.gene067599.t1.exon10;Parent=MS.gene067599.t1
chr4.2 CDS 26709679 26709831 26709679 ID=cds.MS.gene067599.t1;Parent=MS.gene067599.t1
chr4.2 exon 26709311 26709439 26709311 ID=MS.gene067599.t1.exon11;Parent=MS.gene067599.t1
chr4.2 CDS 26709311 26709439 26709311 ID=cds.MS.gene067599.t1;Parent=MS.gene067599.t1
chr4.2 exon 26708462 26708698 26708462 ID=MS.gene067599.t1.exon12;Parent=MS.gene067599.t1
chr4.2 CDS 26708462 26708698 26708462 ID=cds.MS.gene067599.t1;Parent=MS.gene067599.t1
chr4.2 exon 26708034 26708110 26708034 ID=MS.gene067599.t1.exon13;Parent=MS.gene067599.t1
chr4.2 CDS 26708034 26708110 26708034 ID=cds.MS.gene067599.t1;Parent=MS.gene067599.t1
chr4.2 exon 26707750 26707936 26707750 ID=MS.gene067599.t1.exon14;Parent=MS.gene067599.t1
chr4.2 CDS 26707750 26707936 26707750 ID=cds.MS.gene067599.t1;Parent=MS.gene067599.t1
chr4.2 exon 26707324 26707524 26707324 ID=MS.gene067599.t1.exon15;Parent=MS.gene067599.t1
chr4.2 CDS 26707324 26707524 26707324 ID=cds.MS.gene067599.t1;Parent=MS.gene067599.t1
chr4.2 exon 26706876 26706992 26706876 ID=MS.gene067599.t1.exon16;Parent=MS.gene067599.t1
chr4.2 CDS 26706876 26706992 26706876 ID=cds.MS.gene067599.t1;Parent=MS.gene067599.t1
Gene Sequence

>MS.gene067599

ATGTCTGCTCTACCATTCTCAACAACCTGCAGGCATTCAAGCTCACCTTTACATTCCCATTCCAAATCAAACATTTGGCAGCGACAAAACAACATTTGGCATTTGTTTGTCATCACAAAGTCAAATTCCAGAAGAGCAATTAGAAAGCTCTATGTGAAGAATGTTGCCAGCGACAAAGCAGCGGAACTGAAAGAACGACTCATTGGACAAGGTTGCTTGCTGGCATTTTCTCTTGTTTTGTGATTCTTTCTTCACTCCACTTCTTTACATTCTAATATATTATTCAGGATATTCATGTTTATAATTTAAATAGTTATATTTTTTTCAGTGAGCCTTGCAAGAGTTTCAGTTTGATGGAAATTTTGCTGGGTTTAATTGGTTACTAGTGCATTTTTTGGAAGGTTCTCAAAAGTAAGGAGTGGGAACCATGGTTTTATGTTAGATTTATATTGAGATAAACTGTCAATGCACATTATAGACGTTGGCTGATTTAGATAGTAGCTTTCTTAAGGTGTGCAGTATAGGCATCGTAACTTATATTGCCACAGGAAGGATGTCACTTAATATCTTTCCATGTAAATTTGGATTAATGGAATCTAGTTGAGGAAATAAAGATTAGTGATTATGGATCATCTCTTGTTTATTAAATCTGAGCTAATATGGCTTATCTATTTATCCCTTTGAAGTTTGTTGGAGGAAATGTAATAACTAAATACGGGAATGTAAAATACATTTCTCCATATTTTTAAAGTTTCAATGTCATAAACATTATATTTTAATGAATTTCGTTTGAAGGTGATGAATCATGATATTAATCTGACTGTTCTAGACTAGTTCGTAGTTGCTAGTTAGTATTGACTATTGAGTTACTCTTTCCCCTAAGACTTGCCTTTATATAAATCAAGTTTCCTTGAATCGTAATGGAACTAATGACAAAACCTCGTAATAGATTGACAATTTTGATTTATTTATTTATTTATTTATTCAGTTAGCAAAAGTAGAAACACATTTAAGCAATATCATAGCTAATACAACAGTGTTCTCTTGAAGTTATAAGGATATTCTAGATTTTTTTTCTTCATATATATATTTTTATATCGAACTCTAAAATCCAAGATTTTTTAGTATTATATCTTACAATAATGTTTTTTTTTTCTTCTGCAAATATGGTCCTAAATATTAATTCCTTATTGGTTAACACTTGCAGGCACCACTTCAAATGAATTCGTTGCAGATTCTGCATCTGTAGCTTCAAGCATAAAATATCATGCTGAGTTCACCACATCTTTTCTCCTGAGAAATTTGAGCCCAGTAAGGCTTACTTTGCAACTGCAGAGAGTGTCCGTGATTCCCTTATCATAAATTGGAATGCAACATATGAATATTATGAGAGGGTTAATGTTAAGCAAGCTTATTACATGTCTATGGAGTATCTACAGGTTCATATTGGGTTTCCTTTATGAAACACGGGTCATTTTCTTTGCAAATGATTATTAATTTTCATTCCTACATTTTTTCCCAATTGTGAAGGGTAGGGCATTGTTAAATGCAATTGGGAATTTACAACTCTCAGGTCCTTATGCTGAGGCTCTGAGGAAACTGGGTTACAATTTAGAGGATGTGGCTAATCAGGTTTTTTCCTACTATTGTTCTCCTTTGTTGTTGCGGTTTCGGCTTCTGTTAGAAACTTTTACTCTTGTTACAATTTCTGTTTATCAAATAGTCCTCCTGGTAGCATGTAACAATAAGTTGAACTGGACTAATCCCTTTCTGTCCATTTCACAAAATTGTTATCTGTCATCTTGAGGATGCCAAATATTATAGTACAATGTATCTCTTATAGGCTTTCTATTGACAACAAAGATTAGGTCCATATTTGAACCAAGATTGTTACATGTTTGTTTAATGGAAAAAAGTGAGAATATTGTTAGGAAACAAGCAAGCATTCCTTCAAAAAAAAAAAAAAAGCAAGCATGTTTAAGAGTAAAATGTCTTCATTCGTGTGGAAACATACTAATGAAGGACCAAGAAAAACTACAAGAAAAACACAAACAGTTCACGAATGAAATGATAGTAATATGGATAGATTGCAAAGAATTAATCTGAGCATATTTAAAAGCAAACTCACATACAATTCACAGGAGCCAGATGCAGCCCTTGGGAATGGAGGATTAGGCCGGCTTGCTTCTTGCTTTCTAGACTCCTTGGCAACACTGAATTACCCTGCATGGGGATATGGACTTAGATACAGGTATGGTTTATTCAAACAACGTATAACGAAGGACGGTCAGGAGGAAGTTGCTGAAAACTGGCTTGAGGTACTGCTTATATGGATATTCGATAATTATCAATTGTAAGCCAATTTTCATATTATTGCTGCCTATGCAGGCGTGCTTGTTCTTTTAATTGTTCTTTCTTCTATCACTCTTTTTGGAAGCTCTGTAAGTTCTTCTGCAGAGATATTAACTGACTGACGTGTCTATTTATAGATGGGAAATCCCTGGGAAATTCAGAGAAACGATGTCTCTTATCCAGTTAGATTCTATGGAGAAGTTATTTCAGGGCCAGATGGAGCTAAGCAATGGACTGGAGGAGAAAGTATTTTGGCCGTTGCTTATGATGTTCCAATACCTGGATACAAAACTAGAACCACCATAAACTTGCGATTGTGGTCCACTAAAGTTTCAACTAAAGAATTTGATTTGAAGGCTTTCAATACTGGGGATCATGCCAAAGCATACGCTGTCATGAAGAATGCAGAGAAGGTTTGTGGAAGCCTTGTTTCTTTGTGGTCCTTACACCTGCATCTAAGTTCAGTGTCTTCTTCAAAAGTACTTTCTGGAAGATTCAAAATATCCACTACTGAGCTTAGAATGTATTGCATGAATATGACGAAAACCTTATTCTCTTGCTTCAAATTGTAGTGGTACCTATATCTCAGATATAAATCATCGGAGAAGTTTTTTTTCATTTATGGAAAGTAAATTCAGTTTACTGTTTTCATGAATCATTTGTGATGCAAATTTATTTCTTTTAATATTTGTTGTAATCAGATCTGTTACATTCTATACCCTGGGGATGAATCAATAGAAGGCAAGACTTTACGACTAAAGCAACAATATACATTATGCTCAGCCTCTCTCCAGGATATCATTGCACGCTTTGAAAAGAGATCAGGAATGACGGTAAATTGGGACTCCCTTCCAGATAAAGTGGTGGTACAAATGAATGATACTCACCCAACACTCTGCATTCCTGAGCTGATTAGGATATTAATAGATGTGAAGGGTTTAAGCTGGGAGAAAGCTTGGGATATTACTAAAAGGTGTTTCTTTTTGCATTAACTCTATATCCAATTTATATTTAAAAGATATCAAGCCATTATTAGAGCTACTCTAATAACAACGTTTTAACTACTGCTTTGATCTTTACACTTAGTTTGATCTCTCTTTTAATGGCTCTTCTGTTAGAACGGTTGCTTACACAAACCACACAGTTCTACCAGAGGCACTAGAGAAATGGAGTTTGACTCTTCTGCAGGATTTACTTCCTCGACATGTGGAAATAATAAAAAAGATAGATGAGGAGGTAAGGTTGTAATGTTTATTTGGCTTTAATGTTAAAATTATTCTTATTTCATATGTCCATCTACACGGTCTTCTTTATGAACTTTATATAATGTTTTGTATCTTTGTTTTGTTAACCAGTTTACACATGAAGTTGTTTCTGAGTCTGGGACAAATGATCTTAACATGCTGCAAGAAAAGCTCAGAAAGATGAGAATACTAGAGAATATTGAGTTGCCGGATTCGGTGGTTGAGTTTATTAATAATAAAGTTCTTGCCGATGATCCTGTTGAGGAAATTGATGTTGATGATAATGATATAAAGGCAACAGAAAAGAAAGATAATGAAGAACAAAATGATGATGACGACGACGAAGAAGAAGATGTAGTGGGGAAAGACGAACAAGAAGCAGATGATGATGAAGAGCTTGTTGTAGAGAACAAAAAAGAATGGAAATTCGAAGTTGATCCAAACCTGCCAATGATGGTTCGCATGGCTAACCTATGTGTTGTTGGTGGTTTTTCTGTGAACGGGGTAGCTGAGATTCACAGTGAGATTGTAAAAGAGGAAGTTTTTCATGAATTTTACGAGGTATCAAAATCAGCAGATTCTTTTTACGTTAATATGAACAATTTTTATTGCAATTACTGGTATATACATCCATCAAATGTGATATTCATTAATTTTCTCTGTCATTGATTTGACAGTTCTGGCCTGAGAAATTCCAGAATAAAACAAATGGGGTGACACCTAGAAGATGGATCCGTTTCTGTAATCCTGACCTTAGTAAAATAATAACCAAATGGATTGGAACAGAAGACTGGGTAACAGATCTTGAGAAATTGGCTGTACTTCGCAAGGTAAATGAATTTAACTGAGCATTCTGAATGATATTTGAATTAAATAATTTATATGCAACAACTTCCACAGTTGGCTAGTGAGTACATATGCATGATTAGTCACATTATAATGTCAAAATGGCAGCAAGCATTATAGGCGACTCCTTAGTTGAATGTCACTTCACAATTTTTTTTGCACAAAATCTATGTGTTCTTTTGTTCCTTTATATTTTTCCTTTATAGATACATTTTTCTACCAGTTTGCAGATAATGAGGATCTGCAATCAGAGTGGATAGAATCAAAAAGGAGAAACAAGATTAACGTTGCATCATTTATCAAAGAGAAAACAGGTTATGTTGTCAGTCCAGATGCAATGTTTGATGTACAGGTTAGGTTTCTGCCATCAAGAACTACATTTCCTTCTTCTCGTGTTTAGTTAGCATCTGAATAATAGCAGTGCTGGAAATGTTTCATGTCTGGAGTGTTTATTTTCACCTTTTCAAGGAATGAACATTTGTTCTTTGGTTCTTGCTCCTAAAACAACTTACGCATACATAACTCATAAAAAAGTTCATTTTTTTATAGTTAAATAGATTTAGAATCCTGTGTAAAACTTACACAATGAGGATCAGCATCATCCATCTCTAATGTTATAGAAATCCTTGTAACATTATACGGTCTCACTATTTGCTGCATAGGAGAAGGGACAGTGCTCTGTATTATACTATTATTAGCTAAAAATTCCTATGCTGTAAAATAACATCACCCCTTTATGATGGATTCTTAAATACTATATGTTACAGTGTTGTCAAATATCGGCCATGACGGATTGCACATTTACTTATTGTGTAAAACCAAGATCCAATAAATAACAGCTGAATAGATAAAAGGCTAACATGAAATCGTACTTGGGAAAATGGGACAACCATTAAAATTCCAATGGCATGTTGTTTTACACCCTCAATTCATGGTTAATGATAAATGGCATATCTATTGTCAGGTCAAGCGTATTCATGAATACAAACGGCAGTTACTGAATATCATGGGAATTGTTTATCGCTACAAGAAAATGAAAGAATTGAGTGCTGAGGAAAGAAAACAATTGTTTGTTCCTCGGGTTTGTATTTTTGGAGGGAAAGCATTTGCAACATATGTTCAAGCCAAGAGGATTGTAAAATTCATCACAGATGTAGGAGCTACAGTTAATCACGATCCAGAGATTGGAGATCTTTTGAAGGTATCAGTCAAACTTGGGTGATAGATAAACACATTATGGTCGTTCCAAAAATTTGGTTGCTTACGCCTTTTGATGTTTAAATAACAATTTGTTTGCTTTATCTGAAGTAGAACTTTGGAAAATGTTTAATTCCAGGGACAAATCCCAGTAGTTAAATAAATGAATATCTCAACAAAAATGGACTGAAGTAATTGACAAATTTATGTTATTCTTCATACATAACAGCATGTGGCCTCAGCTGCAGAAAAATAAAATTATAGGATGTTAGCTGAAAGCTGATAAAGGGTGTTAAACTAGCATCTTTTTCTACTTAGTCATAAAACAGATCCTGGTTCTTGTCTTAACTTGCAGGTTATATTTGTTCCTGATTACAATGTTAGTGTTGCTGAAATGCTAATTCCTGGCAGTGAATTGTCCCAGCACATTAGGTATAGATAAATATATTTTTTAAAACAAATGCTTTACATTTTGTTTACAATCATTGTTATCAGTTTTTGTTTGACTTATCTTTTTCTGTGTGTTTAGTACAGCTGGGATGGAGGCCAGTGGAACAAGCAACATGAAATTTGCAATGAATGGATGTGTGCAAATTGGAACTCTCGATGGGGCTAATGTTGAAATAAGAGAAGAAGTTGGAGAAGACAACTTCTTTCTTTTTGGCGCACGAGCTGAAGAAATTGCAGGGTTAAGGAAAGAAAGAGCAGAAGGAAAGGTAAGTTCTTAAAATCAGAATACTTGGTTCAATGCAATAATTCCTTTTCCTTCTTGTTTTTCTTTCATACACTTTGCTTTTCATATCAGTGGCAATAACAATTGCTTAAACAAGCTCAAATAAAATGTGGCTTCTATAGATCCTTTAAGGCATTGTTAAGTCCAAGCCAACAGAATTATGTATCATAATCTCAATATAATGTGGTCTGTTGTATGATATATGCAGTTTGTACCAGACCCAAGGTTTGAAGAAGTAAAGGCATATGTTAGAAGTGGTGTTTTTGGCACCTACAACTACGACGAATTGATGGGATCTTTGGAAGGGAATGAAGGCTATGGCCGTGCTGATTATTTCCTTGTTGGCAAGGACTTCCCTAGCTACTTGGAGTGCCAAGAGGAAGTTGACAAGGCATACCGTGATCAAAAAGTAAGTAACATCAAGTCATGGACAAAACATGATATTTCGTCTATTACGTTCTTGTCGAATTCATTATGAAAATTAAAACTACAAGCTTTCCGCAATTCTTTTTGGATGAATTTCTCAGGCACATCATATTCATACCTGTGTTGAACACAAGTTGCCTCAACTGGTAATGAATGAAATTAGAAAATAGCAATCATTTCATACGTTTCTGAATTTTAATACATATTGTTTAATGCATAATGCATAGGTATTTATGCAAGTTATTATACGAACCATGGCATATGTATTGCTTATGTAGCGATCTAAAAGAACTGATTGATGTGTGTTGGTGCAGAAATGGACAAGAATGTCAATCTTGAACACAGCTGGTTCGTATAAATTCAGCAGTGACCGGACTATTCATGAATATGCCAGAGATATATGGAGAATTGAGCCAGTTGTATTGCCTTGA

Protein sequence

>MS.gene067599.t1

MSALPFSTTCRHSSSPLHSHSKSNIWQRQNNIWHLFVITKSNSRRAIRKLYVKNVASDKAAELKERLIGQGTTSNEFVADSASVASSIKYHADKAYFATAESVRDSLIINWNATYEYYERVNVKQAYYMSMEYLQGRALLNAIGNLQLSGPYAEALRKLGYNLEDVANQEPDAALGNGGLGRLASCFLDSLATLNYPAWGYGLRYRYGLFKQRITKDGQEEVAENWLEMGNPWEIQRNDVSYPVRFYGEVISGPDGAKQWTGGESILAVAYDVPIPGYKTRTTINLRLWSTKVSTKEFDLKAFNTGDHAKAYAVMKNAEKICYILYPGDESIEGKTLRLKQQYTLCSASLQDIIARFEKRSGMTVNWDSLPDKVVVQMNDTHPTLCIPELIRILIDVKGLSWEKAWDITKRTVAYTNHTVLPEALEKWSLTLLQDLLPRHVEIIKKIDEEFTHEVVSESGTNDLNMLQEKLRKMRILENIELPDSVVEFINNKVLADDPVEEIDVDDNDIKATEKKDNEEQNDDDDDEEEDVVGKDEQEADDDEELVVENKKEWKFEVDPNLPMMVRMANLCVVGGFSVNGVAEIHSEIVKEEVFHEFYEFWPEKFQNKTNGVTPRRWIRFCNPDLSKIITKWIGTEDWVTDLEKLAVLRKFADNEDLQSEWIESKRRNKINVASFIKEKTGYVVSPDAMFDVQVKRIHEYKRQLLNIMGIVYRYKKMKELSAEERKQLFVPRVCIFGGKAFATYVQAKRIVKFITDVGATVNHDPEIGDLLKVIFVPDYNVSVAEMLIPGSELSQHISTAGMEASGTSNMKFAMNGCVQIGTLDGANVEIREEVGEDNFFLFGARAEEIAGLRKERAEGKFVPDPRFEEVKAYVRSGVFGTYNYDELMGSLEGNEGYGRADYFLVGKDFPSYLECQEEVDKAYRDQKKWTRMSILNTAGSYKFSSDRTIHEYARDIWRIEPVVLP