Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene067599.t1 | XP_003607789.2 | 95.4 | 981 | 30 | 2 | 1 | 966 | 1 | 981 | 0.00E+00 | 1791.2 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene067599.t1 | P53535 | 77.9 | 916 | 186 | 2 | 64 | 966 | 62 | 974 | 0.0e+00 | 1402.5 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene067599.t1 | G7JHG9 | 95.4 | 981 | 30 | 2 | 1 | 966 | 1 | 981 | 0.0e+00 | 1791.2 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene049195 | MS.gene067599 | 0.806429 | 8.26E-50 | -1.69E-46 |
MS.gene049297 | MS.gene067599 | 0.877737 | 4.94E-69 | -1.69E-46 |
MS.gene04933 | MS.gene067599 | 0.819992 | 8.68E-53 | -1.69E-46 |
MS.gene049758 | MS.gene067599 | 0.808808 | 2.58E-50 | -1.69E-46 |
MS.gene050226 | MS.gene067599 | 0.844182 | 8.86E-59 | -1.69E-46 |
MS.gene050227 | MS.gene067599 | 0.847114 | 1.42E-59 | -1.69E-46 |
MS.gene050228 | MS.gene067599 | 0.855 | 8.46E-62 | -1.69E-46 |
MS.gene050330 | MS.gene067599 | -0.828027 | 1.13E-54 | -1.69E-46 |
MS.gene050558 | MS.gene067599 | 0.830091 | 3.57E-55 | -1.69E-46 |
MS.gene050623 | MS.gene067599 | -0.819528 | 1.11E-52 | -1.69E-46 |
MS.gene050642 | MS.gene067599 | 0.871119 | 8.71E-67 | -1.69E-46 |
MS.gene050787 | MS.gene067599 | 0.809163 | 2.17E-50 | -1.69E-46 |
MS.gene050820 | MS.gene067599 | 0.821103 | 4.82E-53 | -1.69E-46 |
MS.gene051240 | MS.gene067599 | 0.826749 | 2.29E-54 | -1.69E-46 |
MS.gene051662 | MS.gene067599 | 0.83091 | 2.25E-55 | -1.69E-46 |
MS.gene051663 | MS.gene067599 | 0.829053 | 6.38E-55 | -1.69E-46 |
MS.gene051860 | MS.gene067599 | 0.8249 | 6.28E-54 | -1.69E-46 |
MS.gene051983 | MS.gene067599 | 0.817273 | 3.59E-52 | -1.69E-46 |
MS.gene052011 | MS.gene067599 | -0.813754 | 2.18E-51 | -1.69E-46 |
MS.gene052176 | MS.gene067599 | 0.834091 | 3.66E-56 | -1.69E-46 |
MS.gene052309 | MS.gene067599 | -0.80839 | 3.17E-50 | -1.69E-46 |
MS.gene052376 | MS.gene067599 | 0.813281 | 2.77E-51 | -1.69E-46 |
MS.gene052389 | MS.gene067599 | 0.801101 | 1.06E-48 | -1.69E-46 |
MS.gene052600 | MS.gene067599 | 0.858358 | 8.70E-63 | -1.69E-46 |
MS.gene053836 | MS.gene067599 | 0.875715 | 2.48E-68 | -1.69E-46 |
MS.gene053907 | MS.gene067599 | 0.822407 | 2.41E-53 | -1.69E-46 |
MS.gene053971 | MS.gene067599 | 0.811531 | 6.68E-51 | -1.69E-46 |
MS.gene054473 | MS.gene067599 | 0.848636 | 5.40E-60 | -1.69E-46 |
MS.gene054942 | MS.gene067599 | 0.886428 | 3.45E-72 | -1.69E-46 |
MS.gene054983 | MS.gene067599 | 0.835835 | 1.33E-56 | -1.69E-46 |
MS.gene055358 | MS.gene067599 | 0.824802 | 6.63E-54 | -1.69E-46 |
MS.gene055422 | MS.gene067599 | 0.816175 | 6.33E-52 | -1.69E-46 |
MS.gene055428 | MS.gene067599 | 0.832639 | 8.43E-56 | -1.69E-46 |
MS.gene056069 | MS.gene067599 | -0.80073 | 1.26E-48 | -1.69E-46 |
MS.gene056451 | MS.gene067599 | 0.800637 | 1.31E-48 | -1.69E-46 |
MS.gene056772 | MS.gene067599 | 0.800278 | 1.55E-48 | -1.69E-46 |
MS.gene056979 | MS.gene067599 | 0.806571 | 7.71E-50 | -1.69E-46 |
MS.gene057121 | MS.gene067599 | 0.838673 | 2.50E-57 | -1.69E-46 |
MS.gene057245 | MS.gene067599 | 0.815927 | 7.19E-52 | -1.69E-46 |
MS.gene057439 | MS.gene067599 | 0.806705 | 7.22E-50 | -1.69E-46 |
MS.gene058002 | MS.gene067599 | 0.811265 | 7.63E-51 | -1.69E-46 |
MS.gene05811 | MS.gene067599 | 0.827542 | 1.48E-54 | -1.69E-46 |
MS.gene058142 | MS.gene067599 | 0.817207 | 3.72E-52 | -1.69E-46 |
MS.gene058710 | MS.gene067599 | 0.802915 | 4.47E-49 | -1.69E-46 |
MS.gene058749 | MS.gene067599 | 0.80518 | 1.51E-49 | -1.69E-46 |
MS.gene058833 | MS.gene067599 | 0.801704 | 7.94E-49 | -1.69E-46 |
MS.gene05907 | MS.gene067599 | 0.816997 | 4.14E-52 | -1.69E-46 |
MS.gene05984 | MS.gene067599 | 0.835085 | 2.06E-56 | -1.69E-46 |
MS.gene060476 | MS.gene067599 | 0.801748 | 7.78E-49 | -1.69E-46 |
MS.gene061040 | MS.gene067599 | -0.833287 | 5.82E-56 | -1.69E-46 |
MS.gene061049 | MS.gene067599 | 0.821681 | 3.55E-53 | -1.69E-46 |
MS.gene061114 | MS.gene067599 | -0.818487 | 1.91E-52 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene067599.t1 | MTR_4g082950 | 95.413 | 981 | 30 | 2 | 1 | 966 | 1 | 981 | 0.0 | 1930 |
MS.gene067599.t1 | MTR_0288s0040 | 73.918 | 878 | 184 | 9 | 67 | 928 | 44 | 892 | 0.0 | 1319 |
MS.gene067599.t1 | MTR_3g462340 | 66.422 | 408 | 135 | 2 | 559 | 966 | 435 | 840 | 0.0 | 584 |
MS.gene067599.t1 | MTR_3g462340 | 54.212 | 463 | 198 | 4 | 52 | 514 | 20 | 468 | 9.86e-167 | 509 |
MS.gene067599.t1 | MTR_2g014460 | 51.741 | 402 | 185 | 5 | 566 | 966 | 595 | 988 | 3.12e-131 | 421 |
MS.gene067599.t1 | MTR_2g014460 | 49.742 | 388 | 183 | 5 | 94 | 478 | 210 | 588 | 3.52e-116 | 380 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene067599.t1 | AT3G29320 | 69.831 | 948 | 229 | 6 | 41 | 966 | 50 | 962 | 0.0 | 1369 |
MS.gene067599.t1 | AT3G46970 | 65.931 | 408 | 137 | 2 | 559 | 966 | 436 | 841 | 0.0 | 585 |
MS.gene067599.t1 | AT3G46970 | 54.212 | 463 | 196 | 5 | 54 | 514 | 21 | 469 | 2.29e-165 | 506 |
Find 224 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GAGCTTTCTAATTGCTCTTC+TGG | 0.206585 | 4.2:+26713955 | None:intergenic |
TTCTATGGAGAAGTTATTTC+AGG | 0.216727 | 4.2:-26711542 | MS.gene067599:CDS |
GATCAGGAATGACGGTAAAT+TGG | 0.232719 | 4.2:-26710911 | MS.gene067599:CDS |
CGACGAATTGATGGGATCTT+TGG | 0.243497 | 4.2:-26707431 | MS.gene067599:CDS |
TTCTGTGTGTTTAGTACAGC+TGG | 0.244339 | 4.2:-26707928 | MS.gene067599:intron |
GATTTGAAGGCTTTCAATAC+TGG | 0.245062 | 4.2:-26711383 | MS.gene067599:CDS |
GTGATTCCCTTATCATAAAT+TGG | 0.247012 | 4.2:-26712738 | MS.gene067599:CDS |
TCTTATCCAGTTAGATTCTA+TGG | 0.254682 | 4.2:-26711557 | MS.gene067599:CDS |
ATTTGTACCACCACTTTATC+TGG | 0.266367 | 4.2:+26710879 | None:intergenic |
AATTACCCTGCATGGGGATA+TGG | 0.274456 | 4.2:-26711866 | MS.gene067599:CDS |
GCAAGCTTATTACATGTCTA+TGG | 0.286957 | 4.2:-26712677 | MS.gene067599:CDS |
TTTAGAGGATGTGGCTAATC+AGG | 0.301609 | 4.2:-26712472 | MS.gene067599:intron |
TGCATTCCAATTTATGATAA+GGG | 0.315129 | 4.2:+26712732 | None:intergenic |
GGACCACAATCGCAAGTTTA+TGG | 0.317000 | 4.2:+26711430 | None:intergenic |
GGTAACAGATCTTGAGAAAT+TGG | 0.317053 | 4.2:-26709693 | MS.gene067599:CDS |
CGAACCATCATTGGCAGGTT+TGG | 0.317570 | 4.2:+26710048 | None:intergenic |
TGCTGAGGCTCTGAGGAAAC+TGG | 0.320911 | 4.2:-26712502 | MS.gene067599:CDS |
CATGAAGTTGTTTCTGAGTC+TGG | 0.322339 | 4.2:-26710369 | MS.gene067599:CDS |
CCCATTCCAAATCAAACATT+TGG | 0.324417 | 4.2:-26714027 | MS.gene067599:CDS |
ATGAATATGCCAGAGATATA+TGG | 0.324624 | 4.2:-26706903 | MS.gene067599:CDS |
AACTAAAGAATTTGATTTGA+AGG | 0.326464 | 4.2:-26711396 | MS.gene067599:CDS |
GACTGGAGGAGAAAGTATTT+TGG | 0.328200 | 4.2:-26711498 | MS.gene067599:CDS |
CAGAAACGGATCCATCTTCT+AGG | 0.345198 | 4.2:+26709767 | None:intergenic |
TCGCTGCCAAATGTTTGATT+TGG | 0.348700 | 4.2:+26714021 | None:intergenic |
TTGCATTCCAATTTATGATA+AGG | 0.352440 | 4.2:+26712731 | None:intergenic |
AGGGCATTGTTAAATGCAAT+TGG | 0.355293 | 4.2:-26712549 | MS.gene067599:CDS |
AAGCTTGGGATATTACTAAA+AGG | 0.359212 | 4.2:-26710779 | MS.gene067599:intron |
TCTGCATTCCTGAGCTGATT+AGG | 0.359974 | 4.2:-26710836 | MS.gene067599:CDS |
TTCTTTAGTTGAAACTTTAG+TGG | 0.365317 | 4.2:+26711409 | None:intergenic |
CAGTTCCGCTGCTTTGTCGC+TGG | 0.365462 | 4.2:+26713916 | None:intergenic |
GTCTTCTGTTCCAATCCATT+TGG | 0.366997 | 4.2:+26709718 | None:intergenic |
CAAGGACTTCCCTAGCTACT+TGG | 0.367893 | 4.2:-26707365 | MS.gene067599:CDS |
CAGAGTGGATAGAATCAAAA+AGG | 0.368398 | 4.2:-26709392 | MS.gene067599:CDS |
TTTCATGTTGCTTGTTCCAC+TGG | 0.374129 | 4.2:+26707897 | None:intergenic |
CCTTCTATTGATTCATCCCC+AGG | 0.374631 | 4.2:+26711011 | None:intergenic |
CCTTTACTTCTTCAAACCTT+GGG | 0.375831 | 4.2:+26707491 | None:intergenic |
ATGAATGGATGTGTGCAAAT+TGG | 0.376874 | 4.2:-26707868 | MS.gene067599:CDS |
ACTAGAGAATATTGAGTTGC+CGG | 0.377955 | 4.2:-26710298 | MS.gene067599:CDS |
AGGAGGAAGTTGCTGAAAAC+TGG | 0.381174 | 4.2:-26711793 | MS.gene067599:CDS |
GGCAGCGACAAAACAACATT+TGG | 0.381599 | 4.2:-26714006 | MS.gene067599:CDS |
ACTTCTCCATAGAATCTAAC+TGG | 0.381745 | 4.2:+26711551 | None:intergenic |
CTGAAGAAATTGCAGGGTTA+AGG | 0.382529 | 4.2:-26707771 | MS.gene067599:CDS |
GAATATTGAGTTGCCGGATT+CGG | 0.385197 | 4.2:-26710292 | MS.gene067599:CDS |
GAAACTGGGTTACAATTTAG+AGG | 0.387483 | 4.2:-26712487 | MS.gene067599:CDS |
CCATTCCCAAGGGCTGCATC+TGG | 0.392098 | 4.2:+26711938 | None:intergenic |
TGTTGATGATAATGATATAA+AGG | 0.401976 | 4.2:-26710214 | MS.gene067599:CDS |
CATCAATTCGTCGTAGTTGT+AGG | 0.404593 | 4.2:+26707441 | None:intergenic |
TTCTTGCTTTCTAGACTCCT+TGG | 0.404594 | 4.2:-26711897 | MS.gene067599:CDS |
AAAACAATTGTTTGTTCCTC+GGG | 0.409628 | 4.2:-26708581 | MS.gene067599:CDS |
AGATGCAATGTTTGATGTAC+AGG | 0.409770 | 4.2:-26709310 | MS.gene067599:intron |
TTTATCTATACCTAATGTGC+TGG | 0.410380 | 4.2:+26708023 | None:intergenic |
GAAAACAATTGTTTGTTCCT+CGG | 0.412817 | 4.2:-26708582 | MS.gene067599:CDS |
CGTGCTGATTATTTCCTTGT+TGG | 0.415896 | 4.2:-26707388 | MS.gene067599:CDS |
ATCAGGAATGACGGTAAATT+GGG | 0.418725 | 4.2:-26710910 | MS.gene067599:CDS |
CTCCATTTCTCTAGTGCCTC+TGG | 0.422856 | 4.2:+26710581 | None:intergenic |
TTCAAAAGATCTCCAATCTC+TGG | 0.423187 | 4.2:+26708463 | None:intergenic |
GTGAATTGTCCCAGCACATT+AGG | 0.424344 | 4.2:-26708033 | MS.gene067599:intron |
ACTTCTTCAAACCTTGGGTC+TGG | 0.424710 | 4.2:+26707496 | None:intergenic |
CTCAATTCTCCATATATCTC+TGG | 0.425589 | 4.2:+26706894 | None:intergenic |
GTCCATTGCTTAGCTCCATC+TGG | 0.426769 | 4.2:+26711518 | None:intergenic |
TCAACATCAATTTCCTCAAC+AGG | 0.426786 | 4.2:+26710231 | None:intergenic |
CTTCATGACAGCGTATGCTT+TGG | 0.427119 | 4.2:+26711352 | None:intergenic |
GCCTTTACTTCTTCAAACCT+TGG | 0.427852 | 4.2:+26707490 | None:intergenic |
CTACAACTACGACGAATTGA+TGG | 0.429462 | 4.2:-26707440 | MS.gene067599:CDS |
ATAAACTCAACCACCGAATC+CGG | 0.430194 | 4.2:+26710279 | None:intergenic |
TACCAGAGGCACTAGAGAAA+TGG | 0.435864 | 4.2:-26710583 | MS.gene067599:CDS |
GTTGAAATAAGAGAAGAAGT+TGG | 0.438273 | 4.2:-26707826 | MS.gene067599:CDS |
GTTAATCACGATCCAGAGAT+TGG | 0.440645 | 4.2:-26708475 | MS.gene067599:CDS |
AAATTCCAGAATAAAACAAA+TGG | 0.446135 | 4.2:-26709797 | MS.gene067599:CDS |
GTTTAAGCTGGGAGAAAGCT+TGG | 0.447465 | 4.2:-26710794 | MS.gene067599:CDS |
GCTCAGGAATGCAGAGTGTT+GGG | 0.447491 | 4.2:+26710844 | None:intergenic |
CCAAATGTTTGATTTGGAAT+GGG | 0.448607 | 4.2:+26714027 | None:intergenic |
ATTTGAAGGCTTTCAATACT+GGG | 0.449329 | 4.2:-26711382 | MS.gene067599:CDS |
GCACGAGCTGAAGAAATTGC+AGG | 0.449587 | 4.2:-26707778 | MS.gene067599:CDS |
ATGGAGTTTGACTCTTCTGC+AGG | 0.451498 | 4.2:-26710564 | MS.gene067599:CDS |
TCACAGTGAGATTGTAAAAG+AGG | 0.453012 | 4.2:-26709971 | MS.gene067599:CDS |
AATTCCAGAATAAAACAAAT+GGG | 0.455147 | 4.2:-26709796 | MS.gene067599:CDS |
AACATGAAATTTGCAATGAA+TGG | 0.455487 | 4.2:-26707883 | MS.gene067599:CDS |
TAGATGTGAAGGGTTTAAGC+TGG | 0.457167 | 4.2:-26710806 | MS.gene067599:CDS |
ACGTATAACGAAGGACGGTC+AGG | 0.458652 | 4.2:-26711813 | MS.gene067599:CDS |
GCCCTTGGGAATGGAGGATT+AGG | 0.460169 | 4.2:-26711929 | MS.gene067599:CDS |
GCAACACTAACATTGTAATC+AGG | 0.461165 | 4.2:+26708076 | None:intergenic |
ATCGTTTCTCTGAATTTCCC+AGG | 0.466281 | 4.2:+26711583 | None:intergenic |
TTCCTCAGAGCCTCAGCATA+AGG | 0.466595 | 4.2:+26712507 | None:intergenic |
ATGCCTTGTCAACTTCCTCT+TGG | 0.467018 | 4.2:+26707338 | None:intergenic |
CTACCAGTTTGCAGATAATG+AGG | 0.467112 | 4.2:-26709424 | MS.gene067599:intron |
TCATTTATCAAAGAGAAAAC+AGG | 0.468618 | 4.2:-26709348 | MS.gene067599:CDS |
CAGGAGCCAGATGCAGCCCT+TGG | 0.468994 | 4.2:-26711944 | MS.gene067599:CDS |
CCAGATGCAGCCCTTGGGAA+TGG | 0.470381 | 4.2:-26711938 | MS.gene067599:CDS |
TGTACATCAAACATTGCATC+TGG | 0.471752 | 4.2:+26709312 | None:intergenic |
GCCAAATGTTTGATTTGGAA+TGG | 0.475175 | 4.2:+26714026 | None:intergenic |
TTAGCCATGCGAACCATCAT+TGG | 0.477716 | 4.2:+26710039 | None:intergenic |
CCTGGGGATGAATCAATAGA+AGG | 0.480958 | 4.2:-26711011 | MS.gene067599:CDS |
GCACGCTTTGAAAAGAGATC+AGG | 0.482626 | 4.2:-26710927 | MS.gene067599:CDS |
ATTAATATCCTAATCAGCTC+AGG | 0.483954 | 4.2:+26710828 | None:intergenic |
GTTGCTGAAATGCTAATTCC+TGG | 0.484765 | 4.2:-26708058 | MS.gene067599:CDS |
TGATTATTTCCTTGTTGGCA+AGG | 0.485154 | 4.2:-26707383 | MS.gene067599:CDS |
GCTTATGATGTTCCAATACC+TGG | 0.487169 | 4.2:-26711470 | MS.gene067599:CDS |
GGGCATTGTTAAATGCAATT+GGG | 0.488583 | 4.2:-26712548 | MS.gene067599:CDS |
GGGTTACAATTTAGAGGATG+TGG | 0.490297 | 4.2:-26712481 | MS.gene067599:CDS |
ATTGGGAATTTACAACTCTC+AGG | 0.491640 | 4.2:-26712531 | MS.gene067599:CDS |
AGCTCAGGAATGCAGAGTGT+TGG | 0.492601 | 4.2:+26710843 | None:intergenic |
AAAATAATAACCAAATGGAT+TGG | 0.492703 | 4.2:-26709728 | MS.gene067599:CDS |
CCATGCGAACCATCATTGGC+AGG | 0.495713 | 4.2:+26710043 | None:intergenic |
GTAAAATTCATCACAGATGT+AGG | 0.497209 | 4.2:-26708505 | MS.gene067599:CDS |
CATGTCTATGGAGTATCTAC+AGG | 0.498390 | 4.2:-26712665 | MS.gene067599:intron |
TGATCCAAACCTGCCAATGA+TGG | 0.501005 | 4.2:-26710052 | MS.gene067599:CDS |
ACGGCAGTTACTGAATATCA+TGG | 0.501069 | 4.2:-26708653 | MS.gene067599:CDS |
TGCTGGGACAATTCACTGCC+AGG | 0.501865 | 4.2:+26708040 | None:intergenic |
CCCAAGGTTTGAAGAAGTAA+AGG | 0.502177 | 4.2:-26707491 | MS.gene067599:CDS |
GAAAGAAAGAGCAGAAGGAA+AGG | 0.502282 | 4.2:-26707749 | MS.gene067599:intron |
TCTGTTACATTCTATACCCT+GGG | 0.504284 | 4.2:-26711028 | MS.gene067599:CDS |
GAACTGAAAGAACGACTCAT+TGG | 0.504413 | 4.2:-26713899 | MS.gene067599:CDS |
ATGGCTAACCTATGTGTTGT+TGG | 0.505350 | 4.2:-26710024 | MS.gene067599:CDS |
TCTTGGCACTCCAAGTAGCT+AGG | 0.505786 | 4.2:+26707355 | None:intergenic |
TTTAAGCTGGGAGAAAGCTT+GGG | 0.507352 | 4.2:-26710793 | MS.gene067599:CDS |
GGGGATATGGACTTAGATAC+AGG | 0.507764 | 4.2:-26711853 | MS.gene067599:CDS |
TAGGATATTAATAGATGTGA+AGG | 0.509727 | 4.2:-26710817 | MS.gene067599:CDS |
ATGTCAATCTTGAACACAGC+TGG | 0.511229 | 4.2:-26706958 | MS.gene067599:CDS |
CAAAGCGTGCAATGATATCC+TGG | 0.512626 | 4.2:+26710940 | None:intergenic |
TGCAAATTGGAACTCTCGAT+GGG | 0.513093 | 4.2:-26707855 | MS.gene067599:CDS |
TTAGTAAAATAATAACCAAA+TGG | 0.516483 | 4.2:-26709733 | MS.gene067599:CDS |
AACACTGAATTACCCTGCAT+GGG | 0.518781 | 4.2:-26711873 | MS.gene067599:CDS |
ATTTATAGATGGGAAATCCC+TGG | 0.520518 | 4.2:-26711601 | MS.gene067599:intron |
CGTATAAATTCAGCAGTGAC+CGG | 0.523558 | 4.2:-26706933 | MS.gene067599:CDS |
TCTATGGAGAAGTTATTTCA+GGG | 0.524340 | 4.2:-26711541 | MS.gene067599:CDS |
ATCTGTTACATTCTATACCC+TGG | 0.525611 | 4.2:-26711029 | MS.gene067599:CDS |
CAACACTGAATTACCCTGCA+TGG | 0.525876 | 4.2:-26711874 | MS.gene067599:CDS |
AATGGATTGGAACAGAAGAC+TGG | 0.527079 | 4.2:-26709715 | MS.gene067599:CDS |
ATGAAGTTGTTTCTGAGTCT+GGG | 0.528015 | 4.2:-26710368 | MS.gene067599:CDS |
TACCATTCTCAACAACCTGC+AGG | 0.529812 | 4.2:-26714072 | MS.gene067599:CDS |
TACCACCACTTTATCTGGAA+GGG | 0.530834 | 4.2:+26710884 | None:intergenic |
AGCGTATTCATGAATACAAA+CGG | 0.531740 | 4.2:-26708672 | MS.gene067599:CDS |
TAAGGTCAGGATTACAGAAA+CGG | 0.536410 | 4.2:+26709753 | None:intergenic |
AGGAGCCAGATGCAGCCCTT+GGG | 0.536797 | 4.2:-26711943 | MS.gene067599:CDS |
TGTGTTTAGTACAGCTGGGA+TGG | 0.537168 | 4.2:-26707923 | MS.gene067599:intron |
TATTGAGTTGCCGGATTCGG+TGG | 0.537392 | 4.2:-26710289 | MS.gene067599:CDS |
GCTAACCTATGTGTTGTTGG+TGG | 0.537986 | 4.2:-26710021 | MS.gene067599:CDS |
TGGCATATTCATGAATAGTC+CGG | 0.538204 | 4.2:+26706914 | None:intergenic |
CCACCATAAACTTGCGATTG+TGG | 0.538883 | 4.2:-26711433 | MS.gene067599:CDS |
GAATTGATGGGATCTTTGGA+AGG | 0.539315 | 4.2:-26707427 | MS.gene067599:CDS |
CTAAGTCCATATCCCCATGC+AGG | 0.541539 | 4.2:+26711860 | None:intergenic |
GGATCTTTGGAAGGGAATGA+AGG | 0.543201 | 4.2:-26707418 | MS.gene067599:CDS |
GGCCTAATCCTCCATTCCCA+AGG | 0.543436 | 4.2:+26711927 | None:intergenic |
TGCCTGCAGGTTGTTGAGAA+TGG | 0.544681 | 4.2:+26714070 | None:intergenic |
TTAAGGAAAGAAAGAGCAGA+AGG | 0.545172 | 4.2:-26707754 | MS.gene067599:CDS |
CTTCTATTGATTCATCCCCA+GGG | 0.545352 | 4.2:+26711012 | None:intergenic |
AATTTCCTCAACAGGATCAT+CGG | 0.550548 | 4.2:+26710239 | None:intergenic |
AGATGTGAAGGGTTTAAGCT+GGG | 0.551577 | 4.2:-26710805 | MS.gene067599:CDS |
TGCAGTTTGTACCAGACCCA+AGG | 0.553369 | 4.2:-26707507 | MS.gene067599:intron |
GATGGAGCTAAGCAATGGAC+TGG | 0.553513 | 4.2:-26711515 | MS.gene067599:CDS |
GAAGTTATTTCAGGGCCAGA+TGG | 0.555318 | 4.2:-26711533 | MS.gene067599:CDS |
GTAAAGGCATATGTTAGAAG+TGG | 0.555712 | 4.2:-26707475 | MS.gene067599:CDS |
ATTATGCTCAGCCTCTCTCC+AGG | 0.555876 | 4.2:-26710958 | MS.gene067599:CDS |
CTTGGCACTCCAAGTAGCTA+GGG | 0.557235 | 4.2:+26707356 | None:intergenic |
TTTATAGATGGGAAATCCCT+GGG | 0.557702 | 4.2:-26711600 | MS.gene067599:intron |
ATGGGGTGACACCTAGAAGA+TGG | 0.559245 | 4.2:-26709778 | MS.gene067599:CDS |
CCTGCCAATGATGGTTCGCA+TGG | 0.561781 | 4.2:-26710043 | MS.gene067599:CDS |
GTACCACCACTTTATCTGGA+AGG | 0.562027 | 4.2:+26710883 | None:intergenic |
TACAACTACGACGAATTGAT+GGG | 0.563220 | 4.2:-26707439 | MS.gene067599:CDS |
GGACTCCCTTCCAGATAAAG+TGG | 0.565184 | 4.2:-26710889 | MS.gene067599:CDS |
TTGGGAATGGAGGATTAGGC+CGG | 0.569055 | 4.2:-26711925 | MS.gene067599:CDS |
TGCAACGAATTCATTTGAAG+TGG | 0.569514 | 4.2:+26712872 | None:intergenic |
AATTTATGATAAGGGAATCA+CGG | 0.571565 | 4.2:+26712740 | None:intergenic |
CTAGAAAGCAAGAAGCAAGC+CGG | 0.574391 | 4.2:+26711906 | None:intergenic |
GATGCAGCCCTTGGGAATGG+AGG | 0.575620 | 4.2:-26711935 | MS.gene067599:CDS |
CGGCAGTTACTGAATATCAT+GGG | 0.576863 | 4.2:-26708652 | MS.gene067599:CDS |
GAAATTGGCTGTACTTCGCA+AGG | 0.577155 | 4.2:-26709678 | MS.gene067599:intron |
TCTGTGTGTTTAGTACAGCT+GGG | 0.577930 | 4.2:-26707927 | MS.gene067599:intron |
GGCCAGATGGAGCTAAGCAA+TGG | 0.578954 | 4.2:-26711520 | MS.gene067599:CDS |
TTGGAAGGGAATGAAGGCTA+TGG | 0.582974 | 4.2:-26707412 | MS.gene067599:CDS |
TTTATTATTTCCACATGTCG+AGG | 0.583310 | 4.2:+26710533 | None:intergenic |
CAACATATGTTCAAGCCAAG+AGG | 0.583384 | 4.2:-26708531 | MS.gene067599:CDS |
TATGGACTTAGATACAGGTA+TGG | 0.584953 | 4.2:-26711848 | MS.gene067599:CDS |
CGACGAAGAAGAAGATGTAG+TGG | 0.585058 | 4.2:-26710148 | MS.gene067599:CDS |
AGGATATTAATAGATGTGAA+GGG | 0.588908 | 4.2:-26710816 | MS.gene067599:CDS |
TAGGGAAGTCCTTGCCAACA+AGG | 0.589757 | 4.2:+26707374 | None:intergenic |
GCTGAGGCTCTGAGGAAACT+GGG | 0.590579 | 4.2:-26712501 | MS.gene067599:CDS |
GGATTTACTTCCTCGACATG+TGG | 0.591364 | 4.2:-26710543 | MS.gene067599:CDS |
GACGAAGAAGAAGATGTAGT+GGG | 0.591470 | 4.2:-26710147 | MS.gene067599:CDS |
GTTTAGTACAGCTGGGATGG+AGG | 0.592504 | 4.2:-26707920 | MS.gene067599:intron |
TCGTTTCTCTGAATTTCCCA+GGG | 0.593399 | 4.2:+26711584 | None:intergenic |
TTATCTATACCTAATGTGCT+GGG | 0.596409 | 4.2:+26708024 | None:intergenic |
CAACATATGAATATTATGAG+AGG | 0.596709 | 4.2:-26712711 | MS.gene067599:CDS |
TCTTGCCGATGATCCTGTTG+AGG | 0.596729 | 4.2:-26710244 | MS.gene067599:CDS |
GCCTAATCCTCCATTCCCAA+GGG | 0.606925 | 4.2:+26711928 | None:intergenic |
AGGGTAATTCAGTGTTGCCA+AGG | 0.609943 | 4.2:+26711880 | None:intergenic |
TAAGTCCATATCCCCATGCA+GGG | 0.610745 | 4.2:+26711861 | None:intergenic |
AATTGATGGGATCTTTGGAA+GGG | 0.613386 | 4.2:-26707426 | MS.gene067599:CDS |
GTCCTTATGCTGAGGCTCTG+AGG | 0.613621 | 4.2:-26712509 | MS.gene067599:CDS |
TGAAAAGAGATCAGGAATGA+CGG | 0.617393 | 4.2:-26710919 | MS.gene067599:CDS |
TATAACGAAGGACGGTCAGG+AGG | 0.619104 | 4.2:-26711810 | MS.gene067599:CDS |
TGTCATGAAGAATGCAGAGA+AGG | 0.620102 | 4.2:-26711339 | MS.gene067599:intron |
AGGTGAGCTTGAATGCCTGC+AGG | 0.620576 | 4.2:+26714057 | None:intergenic |
CACGAGCTGAAGAAATTGCA+GGG | 0.620721 | 4.2:-26707777 | MS.gene067599:CDS |
AACATATGAATATTATGAGA+GGG | 0.623422 | 4.2:-26712710 | MS.gene067599:CDS |
GATTTGGAATGGGAATGTAA+AGG | 0.624865 | 4.2:+26714037 | None:intergenic |
AATGAAAGAATTGAGTGCTG+AGG | 0.627614 | 4.2:-26708608 | MS.gene067599:CDS |
GGAGCTAAGCAATGGACTGG+AGG | 0.628655 | 4.2:-26711512 | MS.gene067599:CDS |
TGCAATGATATCCTGGAGAG+AGG | 0.629144 | 4.2:+26710947 | None:intergenic |
ATTCAAACAACGTATAACGA+AGG | 0.632464 | 4.2:-26711822 | MS.gene067599:CDS |
ACAGCTGGGATGGAGGCCAG+TGG | 0.632889 | 4.2:-26707913 | MS.gene067599:CDS |
GTGCAAATTGGAACTCTCGA+TGG | 0.634864 | 4.2:-26707856 | MS.gene067599:CDS |
GTGCCAAGAGGAAGTTGACA+AGG | 0.636085 | 4.2:-26707341 | MS.gene067599:CDS |
TTTGAAGGCTTTCAATACTG+GGG | 0.639183 | 4.2:-26711381 | MS.gene067599:CDS |
CCACAATCGCAAGTTTATGG+TGG | 0.645345 | 4.2:+26711433 | None:intergenic |
ATGGATTGGAACAGAAGACT+GGG | 0.645354 | 4.2:-26709714 | MS.gene067599:CDS |
TATTGGAACATCATAAGCAA+CGG | 0.649331 | 4.2:+26711475 | None:intergenic |
ACTCTCAGGTCCTTATGCTG+AGG | 0.656696 | 4.2:-26712517 | MS.gene067599:CDS |
ATTCCAGAATAAAACAAATG+GGG | 0.658074 | 4.2:-26709795 | MS.gene067599:CDS |
AAACAACGTATAACGAAGGA+CGG | 0.658557 | 4.2:-26711818 | MS.gene067599:CDS |
TGTTGCCAGCGACAAAGCAG+CGG | 0.667849 | 4.2:-26713921 | MS.gene067599:CDS |
CAACAAGGAAATAATCAGCA+CGG | 0.670194 | 4.2:+26707389 | None:intergenic |
TAGCTACTTGGAGTGCCAAG+AGG | 0.674127 | 4.2:-26707353 | MS.gene067599:CDS |
GTGCCTCTGGTAGAACTGTG+TGG | 0.675525 | 4.2:+26710594 | None:intergenic |
ATGAGGATCTGCAATCAGAG+TGG | 0.676696 | 4.2:-26709407 | MS.gene067599:CDS |
ACACTGAATTACCCTGCATG+GGG | 0.680238 | 4.2:-26711872 | MS.gene067599:CDS |
CTCCCTTCCAGATAAAGTGG+TGG | 0.681896 | 4.2:-26710886 | MS.gene067599:CDS |
AGTTGCTGAAAACTGGCTTG+AGG | 0.695370 | 4.2:-26711786 | MS.gene067599:intron |
AAAGAACGACTCATTGGACA+AGG | 0.698404 | 4.2:-26713893 | MS.gene067599:intron |
AAACCACACAGTTCTACCAG+AGG | 0.720864 | 4.2:-26710597 | MS.gene067599:CDS |
CTGTTACATTCTATACCCTG+GGG | 0.720986 | 4.2:-26711027 | MS.gene067599:CDS |
ACGAAGAAGAAGATGTAGTG+GGG | 0.722856 | 4.2:-26710146 | MS.gene067599:CDS |
GCAAATTGGAACTCTCGATG+GGG | 0.738537 | 4.2:-26707854 | MS.gene067599:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr4.2 | gene | 26706876 | 26714104 | 26706876 | ID=MS.gene067599 |
chr4.2 | mRNA | 26706876 | 26714104 | 26706876 | ID=MS.gene067599.t1;Parent=MS.gene067599 |
chr4.2 | exon | 26713894 | 26714104 | 26713894 | ID=MS.gene067599.t1.exon1;Parent=MS.gene067599.t1 |
chr4.2 | CDS | 26713894 | 26714104 | 26713894 | ID=cds.MS.gene067599.t1;Parent=MS.gene067599.t1 |
chr4.2 | exon | 26712831 | 26712897 | 26712831 | ID=MS.gene067599.t1.exon2;Parent=MS.gene067599.t1 |
chr4.2 | CDS | 26712831 | 26712897 | 26712831 | ID=cds.MS.gene067599.t1;Parent=MS.gene067599.t1 |
chr4.2 | exon | 26712666 | 26712792 | 26712666 | ID=MS.gene067599.t1.exon3;Parent=MS.gene067599.t1 |
chr4.2 | CDS | 26712666 | 26712792 | 26712666 | ID=cds.MS.gene067599.t1;Parent=MS.gene067599.t1 |
chr4.2 | exon | 26712473 | 26712574 | 26712473 | ID=MS.gene067599.t1.exon4;Parent=MS.gene067599.t1 |
chr4.2 | CDS | 26712473 | 26712574 | 26712473 | ID=cds.MS.gene067599.t1;Parent=MS.gene067599.t1 |
chr4.2 | exon | 26711787 | 26711963 | 26711787 | ID=MS.gene067599.t1.exon5;Parent=MS.gene067599.t1 |
chr4.2 | CDS | 26711787 | 26711963 | 26711787 | ID=cds.MS.gene067599.t1;Parent=MS.gene067599.t1 |
chr4.2 | exon | 26711340 | 26711615 | 26711340 | ID=MS.gene067599.t1.exon6;Parent=MS.gene067599.t1 |
chr4.2 | CDS | 26711340 | 26711615 | 26711340 | ID=cds.MS.gene067599.t1;Parent=MS.gene067599.t1 |
chr4.2 | exon | 26710780 | 26711051 | 26710780 | ID=MS.gene067599.t1.exon7;Parent=MS.gene067599.t1 |
chr4.2 | CDS | 26710780 | 26711051 | 26710780 | ID=cds.MS.gene067599.t1;Parent=MS.gene067599.t1 |
chr4.2 | exon | 26710517 | 26710634 | 26710517 | ID=MS.gene067599.t1.exon8;Parent=MS.gene067599.t1 |
chr4.2 | CDS | 26710517 | 26710634 | 26710517 | ID=cds.MS.gene067599.t1;Parent=MS.gene067599.t1 |
chr4.2 | exon | 26709948 | 26710397 | 26709948 | ID=MS.gene067599.t1.exon9;Parent=MS.gene067599.t1 |
chr4.2 | CDS | 26709948 | 26710397 | 26709948 | ID=cds.MS.gene067599.t1;Parent=MS.gene067599.t1 |
chr4.2 | exon | 26709679 | 26709831 | 26709679 | ID=MS.gene067599.t1.exon10;Parent=MS.gene067599.t1 |
chr4.2 | CDS | 26709679 | 26709831 | 26709679 | ID=cds.MS.gene067599.t1;Parent=MS.gene067599.t1 |
chr4.2 | exon | 26709311 | 26709439 | 26709311 | ID=MS.gene067599.t1.exon11;Parent=MS.gene067599.t1 |
chr4.2 | CDS | 26709311 | 26709439 | 26709311 | ID=cds.MS.gene067599.t1;Parent=MS.gene067599.t1 |
chr4.2 | exon | 26708462 | 26708698 | 26708462 | ID=MS.gene067599.t1.exon12;Parent=MS.gene067599.t1 |
chr4.2 | CDS | 26708462 | 26708698 | 26708462 | ID=cds.MS.gene067599.t1;Parent=MS.gene067599.t1 |
chr4.2 | exon | 26708034 | 26708110 | 26708034 | ID=MS.gene067599.t1.exon13;Parent=MS.gene067599.t1 |
chr4.2 | CDS | 26708034 | 26708110 | 26708034 | ID=cds.MS.gene067599.t1;Parent=MS.gene067599.t1 |
chr4.2 | exon | 26707750 | 26707936 | 26707750 | ID=MS.gene067599.t1.exon14;Parent=MS.gene067599.t1 |
chr4.2 | CDS | 26707750 | 26707936 | 26707750 | ID=cds.MS.gene067599.t1;Parent=MS.gene067599.t1 |
chr4.2 | exon | 26707324 | 26707524 | 26707324 | ID=MS.gene067599.t1.exon15;Parent=MS.gene067599.t1 |
chr4.2 | CDS | 26707324 | 26707524 | 26707324 | ID=cds.MS.gene067599.t1;Parent=MS.gene067599.t1 |
chr4.2 | exon | 26706876 | 26706992 | 26706876 | ID=MS.gene067599.t1.exon16;Parent=MS.gene067599.t1 |
chr4.2 | CDS | 26706876 | 26706992 | 26706876 | ID=cds.MS.gene067599.t1;Parent=MS.gene067599.t1 |
Gene Sequence |
Protein sequence |