AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene068798


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene068798.t1 MTR_1g058490 82.828 99 13 2 88 183 187 284 5.91e-45 151
MS.gene068798.t1 MTR_1g060490 87.234 94 11 1 1 94 1 93 2.36e-42 145
MS.gene068798.t1 MTR_1g060520 67.010 97 28 2 1 94 1 96 8.70e-36 127
MS.gene068798.t1 MTR_1g060500 69.444 72 21 1 23 94 26 96 6.65e-28 107
MS.gene068798.t1 MTR_7g104220 59.211 76 27 1 23 94 23 98 4.86e-23 94.7
MS.gene068798.t1 MTR_1g092740 52.381 84 37 2 25 108 25 105 2.07e-20 87.4
MS.gene068798.t1 MTR_7g105320 49.495 99 45 4 88 183 191 287 1.48e-19 84.7
MS.gene068798.t1 MTR_1g092760 77.551 49 9 1 38 86 39 85 5.07e-19 83.6
MS.gene068798.t1 MTR_1g092690 45.556 90 45 2 7 94 18 105 2.38e-18 82.0
MS.gene068798.t1 MTR_1g092750 75.510 49 10 1 38 86 40 86 4.98e-18 80.9
MS.gene068798.t1 MTR_8g022810 38.636 88 48 2 9 92 14 99 4.43e-12 64.3
MS.gene068798.t1 MTR_8g022810 38.636 88 48 2 9 92 14 99 4.72e-12 63.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene068798.t1 AT5G03610 49.573 117 55 3 7 120 11 126 1.75e-27 106
MS.gene068798.t1 AT3G09930 47.525 101 50 2 22 119 21 121 2.95e-21 89.7
MS.gene068798.t1 AT3G09930 47.525 101 50 2 22 119 21 121 2.95e-21 89.7
MS.gene068798.t1 AT2G36325 48.421 95 40 2 8 94 10 103 2.73e-18 81.6
MS.gene068798.t1 AT5G03600 46.341 82 42 2 13 94 25 104 2.47e-17 79.0
MS.gene068798.t1 AT5G03590 50.000 80 38 2 9 88 7 84 2.80e-17 76.6
MS.gene068798.t1 AT5G03600 50.000 68 33 1 27 94 3 69 1.88e-16 76.3
MS.gene068798.t1 AT2G36090 52.809 89 31 3 88 173 177 257 2.14e-16 75.9
MS.gene068798.t1 AT1G53920 38.202 89 51 1 8 92 18 106 2.81e-12 64.7
MS.gene068798.t1 AT3G48460 30.928 97 62 2 1 92 1 97 3.55e-11 61.6

Find 57 sgRNAs with CRISPR-Local

Find 220 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGGAGAAGATGGAAGGGAAT+TGG 0.257862 1.2:-46680135 MS.gene068798:CDS
TAGTTTGCAAGTGGAGGATA+TGG 0.265067 1.2:-46680217 MS.gene068798:CDS
GGAGAAGATGGAAGGGAATT+GGG 0.265157 1.2:-46680134 MS.gene068798:CDS
TGGAGGTGGTGCAGCGGAGT+GGG 0.320619 1.2:-46680356 MS.gene068798:CDS
GATGTTGGCGGAGGAGAATA+TGG 0.349074 1.2:-46680253 MS.gene068798:CDS
CATCTTCTCATGTCTTTCGC+TGG 0.362737 1.2:-46683551 MS.gene068798:CDS
CCTTATGGCATAACCTTTCC+CGG 0.367441 1.2:-46682938 MS.gene068798:CDS
CTGTTTGCAACGGTGGTTTA+CGG 0.378960 1.2:-46680321 MS.gene068798:CDS
GTGGAGGTGGTGCAGCGGAG+TGG 0.384568 1.2:-46680357 MS.gene068798:CDS
CGTGAATGGAAGGGATAGTT+TGG 0.385547 1.2:-46680184 MS.gene068798:CDS
GGAGGTGGTGCAGCGGAGTG+GGG 0.386877 1.2:-46680355 MS.gene068798:CDS
CGTTGGAAGGTAGGAGAAGA+TGG 0.393190 1.2:-46680146 MS.gene068798:CDS
CTGGTTCTTGTACTTCTCTC+AGG 0.405056 1.2:-46683532 MS.gene068798:intron
CCGGGAAAGGTTATGCCATA+AGG 0.417887 1.2:+46682938 None:intergenic
GAGAAGATGGAAGGGAATTG+GGG 0.452348 1.2:-46680133 MS.gene068798:CDS
TCTACCGTCGGAGAATCTTC+CGG 0.453026 1.2:+46682907 None:intergenic
GGTTCATGGAAAGAACCTTA+TGG 0.453293 1.2:-46682953 MS.gene068798:CDS
CAAATCAAAGAGTGCAATGA+AGG 0.454522 1.2:+46679996 None:intergenic
GTCGAGTGGCAAGGCGGTGG+AGG 0.460504 1.2:-46680373 MS.gene068798:CDS
GAGTGGCAAGGCGGTGGAGG+TGG 0.463232 1.2:-46680370 MS.gene068798:CDS
GGAGAATATGGAGGTTAGAG+AGG 0.476479 1.2:-46680241 MS.gene068798:CDS
GGAGACTCTTATGTTGATAC+CGG 0.484084 1.2:-46682998 MS.gene068798:CDS
TAGAGAGGTTAGTTTGCAAG+TGG 0.502224 1.2:-46680226 MS.gene068798:CDS
GGTGGTGCAGCGGAGTGGGG+AGG 0.507878 1.2:-46680352 MS.gene068798:CDS
AGAGGTTAGTTTGCAAGTGG+AGG 0.510549 1.2:-46680223 MS.gene068798:CDS
GGAAGGTAGGAGAAGATGGA+AGG 0.515160 1.2:-46680142 MS.gene068798:CDS
ATGGATGGAAAACACGTGAA+TGG 0.517970 1.2:-46680198 MS.gene068798:CDS
TGCGTAAGGCGTTGGAAGGT+AGG 0.522219 1.2:-46680155 MS.gene068798:CDS
ACCTTTCCCGGAAAACCTGC+CGG 0.522743 1.2:-46682926 MS.gene068798:CDS
CGTGTCGAGTGGCAAGGCGG+TGG 0.531169 1.2:-46680376 MS.gene068798:CDS
AAGGGAATTGGGGAAGAAGA+AGG 0.535210 1.2:-46680123 MS.gene068798:intron
AACAGCGACGGCGACGGAGG+TGG 0.537963 1.2:-46680295 MS.gene068798:CDS
AGGCGGTGGAGGTGGTGCAG+CGG 0.545534 1.2:-46680362 MS.gene068798:CDS
GAAGGTAGGAGAAGATGGAA+GGG 0.548069 1.2:-46680141 MS.gene068798:CDS
TTGCAAGTGGAGGATATGGA+TGG 0.553223 1.2:-46680213 MS.gene068798:CDS
ATGGAAAACACGTGAATGGA+AGG 0.557600 1.2:-46680194 MS.gene068798:CDS
GTGTAGTGTGGTGGTGATGT+TGG 0.561708 1.2:-46680268 MS.gene068798:CDS
TAAGGTTCTTTCCATGAACC+AGG 0.564705 1.2:+46682956 None:intergenic
CCGTCGGAGAATCTTCCGGC+AGG 0.570452 1.2:+46682911 None:intergenic
TGTGGTGGTGATGTTGGCGG+AGG 0.574599 1.2:-46680262 MS.gene068798:CDS
TAGTGTGGTGGTGATGTTGG+CGG 0.576928 1.2:-46680265 MS.gene068798:CDS
CGGAGAAACAGCGACGGCGA+CGG 0.589608 1.2:-46680301 MS.gene068798:CDS
ATTGTTAGGGCTGCAAGCTG+AGG 0.595633 1.2:-46683068 MS.gene068798:intron
AGAAACAGCGACGGCGACGG+AGG 0.596172 1.2:-46680298 MS.gene068798:CDS
GGTGAAGTTGCTGTTTGCAA+CGG 0.596822 1.2:-46680331 MS.gene068798:CDS
GGTGAACGTGTCGAGTGGCA+AGG 0.607475 1.2:-46680382 MS.gene068798:CDS
GAAGTTGCTGTTTGCAACGG+TGG 0.616823 1.2:-46680328 MS.gene068798:CDS
GTCAGTTAAAACTCTACCGT+CGG 0.618067 1.2:+46682895 None:intergenic
AAGGCGGTGAACGTGTCGAG+TGG 0.637816 1.2:-46680387 MS.gene068798:CDS
TTCTTAGTATTTAGACAAGG+CGG 0.642973 1.2:-46680403 MS.gene068798:intron
GTTGGCGGAGGAGAATATGG+AGG 0.656704 1.2:-46680250 MS.gene068798:CDS
TGGAAAACACGTGAATGGAA+GGG 0.659109 1.2:-46680193 MS.gene068798:CDS
GGAGGTGGCGTTGTGTAGTG+TGG 0.663867 1.2:-46680280 MS.gene068798:CDS
GGTGGCGTTGTGTAGTGTGG+TGG 0.695299 1.2:-46680277 MS.gene068798:CDS
GAACGTGTCGAGTGGCAAGG+CGG 0.733374 1.2:-46680379 MS.gene068798:CDS
CCTGCCGGAAGATTCTCCGA+CGG 0.737578 1.2:-46682911 MS.gene068798:CDS
GGTTTACGGAGAAACAGCGA+CGG 0.737765 1.2:-46680307 MS.gene068798:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATTTAATTAAGGAAAATTT+AGG - chr1.2:46681633-46681652 MS.gene068798:intron 10.0%
!! ATAAATAGAGAAATATAATA+CGG + chr1.2:46681906-46681925 None:intergenic 10.0%
!! ATTAATTAAGAAAAATCAAT+GGG + chr1.2:46680435-46680454 None:intergenic 10.0%
!! ATTTAAAAATTATAAAAGAG+TGG - chr1.2:46682957-46682976 MS.gene068798:CDS 10.0%
!! TAAAGAATAAAAAGAATTAA+TGG + chr1.2:46681106-46681125 None:intergenic 10.0%
!! TAAAGAATTAAATTTAATTG+AGG + chr1.2:46681141-46681160 None:intergenic 10.0%
!! TATTAATTAAGAAAAATCAA+TGG + chr1.2:46680436-46680455 None:intergenic 10.0%
!!! AATAGAAAACTATTTTAAAA+TGG + chr1.2:46683011-46683030 None:intergenic 10.0%
!!! ATAGAAAACTATTTTAAAAT+GGG + chr1.2:46683010-46683029 None:intergenic 10.0%
!!! ATTATGTTTAATTTCTTAAA+AGG + chr1.2:46681166-46681185 None:intergenic 10.0%
!!! ATTTTAAAATAGTTTTCTAT+TGG - chr1.2:46683010-46683029 MS.gene068798:CDS 10.0%
!!! ATTTTATCATATATTTTTGT+AGG + chr1.2:46682295-46682314 None:intergenic 10.0%
!!! TTTTATTTGTACAAAAAAAA+AGG + chr1.2:46681362-46681381 None:intergenic 10.0%
!!! TTTTTGTAAAAAAAAAAAAC+AGG - chr1.2:46681672-46681691 MS.gene068798:intron 10.0%
!! AAAATTGAATATACGAAAAT+AGG + chr1.2:46682049-46682068 None:intergenic 15.0%
!! ACCAAATATAAAATATATCA+TGG + chr1.2:46681996-46682015 None:intergenic 15.0%
!! ATTGAATATGTAGTAATTAT+AGG - chr1.2:46681433-46681452 MS.gene068798:intron 15.0%
!! TTCAATATACTTTAATAGAA+TGG - chr1.2:46680218-46680237 MS.gene068798:CDS 15.0%
!! TTTGTCAAAAAAAAAAAAAC+AGG + chr1.2:46681081-46681100 None:intergenic 15.0%
!!! ATCTCATATTTTTTTATTGA+TGG - chr1.2:46681456-46681475 MS.gene068798:intron 15.0%
!!! ATTTAGGTTTAAAGAATTAA+TGG - chr1.2:46681649-46681668 MS.gene068798:intron 15.0%
!!! TCCATGATATATTTTATATT+TGG - chr1.2:46681992-46682011 MS.gene068798:intron 15.0%
!!! TTTTATTGAATCATCATTTT+AGG + chr1.2:46681277-46681296 None:intergenic 15.0%
!!! TTTTTTTAAGAATAGAAAAG+TGG + chr1.2:46681385-46681404 None:intergenic 15.0%
!! AAAAAAAAAAAACAGGTTTG+AGG - chr1.2:46681679-46681698 MS.gene068798:intron 20.0%
!! AAAAAAAAAAAACAGGTTTG+AGG + chr1.2:46681698-46681679 None:intergenic 20.0%
!! AAAAAGAATCGTGTATTTAA+TGG - chr1.2:46681514-46681533 MS.gene068798:intron 20.0%
!! AAATCCATATTTCTTCATTA+TGG - chr1.2:46681542-46681561 MS.gene068798:intron 20.0%
!! ACGTTTCTTAATTAAAAAGA+GGG + chr1.2:46681412-46681431 None:intergenic 20.0%
!! TATGATAAAATTAAAGTGAC+CGG - chr1.2:46682304-46682323 MS.gene068798:intron 20.0%
!!! ACTTCTAAAAATCTATTTAG+TGG + chr1.2:46682900-46682919 None:intergenic 20.0%
!!! CACAATACAATATAGTATTT+TGG - chr1.2:46680313-46680332 MS.gene068798:CDS 20.0%
!!! GATTTTTCAATCAAAGATTT+GGG + chr1.2:46682364-46682383 None:intergenic 20.0%
!!! TATTATAAGTTTTGAGATGT+GGG - chr1.2:46681923-46681942 MS.gene068798:intron 20.0%
!!! TTATTATAAGTTTTGAGATG+TGG - chr1.2:46681922-46681941 MS.gene068798:intron 20.0%
!!! TTTTTCTTAGTATTTAGACA+AGG - chr1.2:46683161-46683180 MS.gene068798:intron 20.0%
! ATGCTATTAACATAATCAAC+TGG - chr1.2:46680733-46680752 MS.gene068798:intron 25.0%
! CACGTTTCTTAATTAAAAAG+AGG + chr1.2:46681413-46681432 None:intergenic 25.0%
! CGTTTCTTAATTAAAAAGAG+GGG + chr1.2:46681411-46681430 None:intergenic 25.0%
! GGAACAAGTTAAAATAAAAG+GGG + chr1.2:46680414-46680433 None:intergenic 25.0%
! GGGAACAAGTTAAAATAAAA+GGG + chr1.2:46680415-46680434 None:intergenic 25.0%
! GTTTCTTAATTAAAAAGAGG+GGG + chr1.2:46681410-46681429 None:intergenic 25.0%
! TAACTGCCGAATTATAAAAT+CGG + chr1.2:46681786-46681805 None:intergenic 25.0%
! TCCAAGTTAATAGCATATAA+CGG - chr1.2:46682262-46682281 MS.gene068798:intron 25.0%
! TGGGAACAAGTTAAAATAAA+AGG + chr1.2:46680416-46680435 None:intergenic 25.0%
! TTATCTGATTCACATATTGA+AGG + chr1.2:46682790-46682809 None:intergenic 25.0%
!! AAAACGAACAATTCTTTTGT+AGG + chr1.2:46680548-46680567 None:intergenic 25.0%
!! AAATAGTTTTCTATTGGAGA+TGG - chr1.2:46683016-46683035 MS.gene068798:CDS 25.0%
!! ACAAAAGAATTGTTCGTTTT+TGG - chr1.2:46680548-46680567 MS.gene068798:intron 25.0%
!! GATTACAAAGCATTCTTAAT+CGG - chr1.2:46682723-46682742 MS.gene068798:intron 25.0%
!! TTTCTTTCTTTCTCTTTTCT+TGG - chr1.2:46680778-46680797 MS.gene068798:intron 25.0%
!!! ATTATAAGTTTTGAGATGTG+GGG - chr1.2:46681924-46681943 MS.gene068798:intron 25.0%
!!! CATGTTTGTTTTTGAGATAT+AGG + chr1.2:46680135-46680154 None:intergenic 25.0%
!!! CGATTTTTCAATCAAAGATT+TGG + chr1.2:46682365-46682384 None:intergenic 25.0%
AAAAAAGTAAACCTGGTTCA+TGG - chr1.2:46680600-46680619 MS.gene068798:intron 30.0%
ACAGAGATAAAAAGATGATG+AGG - chr1.2:46682535-46682554 MS.gene068798:intron 30.0%
AGAAACTGGAAGTAAAAACT+AGG - chr1.2:46682603-46682622 MS.gene068798:intron 30.0%
AGAGATAAAAAGATGATGAG+GGG - chr1.2:46682537-46682556 MS.gene068798:intron 30.0%
ATTTCATCATCTAAGTGTGA+TGG + chr1.2:46682466-46682485 None:intergenic 30.0%
CAGAGATAAAAAGATGATGA+GGG - chr1.2:46682536-46682555 MS.gene068798:intron 30.0%
CGTAAAGAAGAAGAAAGAAA+GGG - chr1.2:46683479-46683498 MS.gene068798:intron 30.0%
CTCTCGTATTTCTTCATTTA+TGG + chr1.2:46681222-46681241 None:intergenic 30.0%
GAAAATCATACACATACACA+TGG + chr1.2:46680192-46680211 None:intergenic 30.0%
GTTGCCATAATGAAGAAATA+TGG + chr1.2:46681549-46681568 None:intergenic 30.0%
TAATAGCATTAGAGAGAGAT+GGG + chr1.2:46680722-46680741 None:intergenic 30.0%
TAGAGGATTTGATGCTTATT+AGG - chr1.2:46682927-46682946 MS.gene068798:CDS 30.0%
TATGCGTTTCGAATTAATTC+AGG - chr1.2:46680874-46680893 MS.gene068798:intron 30.0%
TCGTAAAGAAGAAGAAAGAA+AGG - chr1.2:46683478-46683497 MS.gene068798:intron 30.0%
TTAACTACCGAGGAAAAATT+CGG - chr1.2:46680996-46681015 MS.gene068798:intron 30.0%
TTAATAGCATTAGAGAGAGA+TGG + chr1.2:46680723-46680742 None:intergenic 30.0%
TTCTTAGTATTTAGACAAGG+CGG - chr1.2:46683164-46683183 MS.gene068798:intron 30.0%
! AAAAGACGTTTTTATCCCTT+CGG - chr1.2:46680940-46680959 MS.gene068798:intron 30.0%
! AGTGATTTTCACATAGATCT+AGG + chr1.2:46682502-46682521 None:intergenic 30.0%
! CTTTTGTAGGATGATATTTG+AGG + chr1.2:46680535-46680554 None:intergenic 30.0%
!! ACATCTTGTTGTTCATTGTT+AGG - chr1.2:46680485-46680504 MS.gene068798:intron 30.0%
!! CATCTTGTTGTTCATTGTTA+GGG - chr1.2:46680486-46680505 MS.gene068798:intron 30.0%
!! TAGTTTGGTAATTTTGCGTA+AGG - chr1.2:46683398-46683417 MS.gene068798:intron 30.0%
!! TTCATCCTTTACGTTTTTAG+CGG + chr1.2:46682221-46682240 None:intergenic 30.0%
!!! AGAGTTTTAACTGACTTCAT+TGG - chr1.2:46680680-46680699 MS.gene068798:intron 30.0%
!!! ATAGTATTTTGGTGTGAATC+AGG - chr1.2:46680324-46680343 MS.gene068798:CDS 30.0%
!!! ATGAACCAGGTTTACTTTTT+TGG + chr1.2:46680601-46680620 None:intergenic 30.0%
!!! TGAACCAGGTTTACTTTTTT+GGG + chr1.2:46680600-46680619 None:intergenic 30.0%
!!! TTTTAGAAGTGTTGCATTAG+AGG - chr1.2:46682910-46682929 MS.gene068798:CDS 30.0%
AAAGAAGAAGAAAGAAAGGG+AGG - chr1.2:46683482-46683501 MS.gene068798:intron 35.0%
AAAGCACAAGAAAGGTAAAG+TGG + chr1.2:46681970-46681989 None:intergenic 35.0%
AAAGGGAGGAAAGAAAAAAG+AGG - chr1.2:46683496-46683515 MS.gene068798:intron 35.0%
AACACCCAAAAAAGTAAACC+TGG - chr1.2:46680593-46680612 MS.gene068798:intron 35.0%
AAGGGAGGAAAGAAAAAAGA+GGG - chr1.2:46683497-46683516 MS.gene068798:intron 35.0%
ACTTCCAGTTTCTTCATTGA+GGG + chr1.2:46682596-46682615 None:intergenic 35.0%
ATAAAAGGGGAATGTATTGC+AGG + chr1.2:46680401-46680420 None:intergenic 35.0%
ATGACCTGTGAAAATGAATG+AGG + chr1.2:46683059-46683078 None:intergenic 35.0%
CTGAGGAAATCTGAAAACTT+CGG - chr1.2:46681029-46681048 MS.gene068798:intron 35.0%
GAGATAAAAAGATGATGAGG+GGG - chr1.2:46682538-46682557 MS.gene068798:intron 35.0%
GATATGATGTGTTTGCTTAC+AGG - chr1.2:46683534-46683553 MS.gene068798:CDS 35.0%
GCCGTTATATGCTATTAACT+TGG + chr1.2:46682266-46682285 None:intergenic 35.0%
TAACTGCCGAATTATGAAAC+CGG - chr1.2:46680967-46680986 MS.gene068798:intron 35.0%
TACTTCCAGTTTCTTCATTG+AGG + chr1.2:46682597-46682616 None:intergenic 35.0%
TGACCTGTGAAAATGAATGA+GGG + chr1.2:46683058-46683077 None:intergenic 35.0%
TTAACTACCGAGGAAAACTT+CGG + chr1.2:46681757-46681776 None:intergenic 35.0%
! AAAAGACGTTTTTACCCCTT+CGG + chr1.2:46681813-46681832 None:intergenic 35.0%
! AAACAGGTTTGAGGTTTCTT+CGG + chr1.2:46681065-46681084 None:intergenic 35.0%
! AAAGAAAAAAGAGGGCACAA+AGG - chr1.2:46683505-46683524 MS.gene068798:intron 35.0%
! CAAATCAAAGAGTGCAATGA+AGG + chr1.2:46683574-46683593 None:intergenic 35.0%
! CATGGATAAAAGCACAAGAA+AGG + chr1.2:46681978-46681997 None:intergenic 35.0%
! TTAACTGCCGAATTTTTCCT+CGG + chr1.2:46681006-46681025 None:intergenic 35.0%
!! CTGCAGCCGATTTTATAATT+CGG - chr1.2:46681777-46681796 MS.gene068798:intron 35.0%
!! TTGACACATTAGCTTTGAGT+AGG + chr1.2:46681846-46681865 None:intergenic 35.0%
!!! TTTACTTTTTTGGGTGTTGC+CGG + chr1.2:46680591-46680610 None:intergenic 35.0%
AAATGAACACCGCAAGAAGA+CGG - chr1.2:46682402-46682421 MS.gene068798:intron 40.0%
AACACAATCACCACACAATG+AGG + chr1.2:46682025-46682044 None:intergenic 40.0%
ATGGAAAACACGTGAATGGA+AGG - chr1.2:46683373-46683392 MS.gene068798:intron 40.0%
ATGGATGGAAAACACGTGAA+TGG - chr1.2:46683369-46683388 MS.gene068798:intron 40.0%
CAACACCGCTAAAAACGTAA+AGG - chr1.2:46682213-46682232 MS.gene068798:intron 40.0%
CCGAGGAAAATTGAAAGCTT+CGG + chr1.2:46681724-46681743 None:intergenic 40.0%
CTGGAAGTAAAAACTAGGAC+CGG - chr1.2:46682608-46682627 MS.gene068798:intron 40.0%
CTTCCAGTTTCTTCATTGAG+GGG + chr1.2:46682595-46682614 None:intergenic 40.0%
GGAGACTCTTATGTTGATAC+CGG - chr1.2:46680569-46680588 MS.gene068798:intron 40.0%
GGTTCATGGAAAGAACCTTA+TGG - chr1.2:46680614-46680633 MS.gene068798:intron 40.0%
GTCAGTTAAAACTCTACCGT+CGG + chr1.2:46680675-46680694 None:intergenic 40.0%
TAAAGTGACCGGAATATCCA+TGG - chr1.2:46682315-46682334 MS.gene068798:intron 40.0%
TAAGGTTCTTTCCATGAACC+AGG + chr1.2:46680614-46680633 None:intergenic 40.0%
TAGAGAGAGATGGGTGAAAT+AGG + chr1.2:46680713-46680732 None:intergenic 40.0%
TGGAAAACACGTGAATGGAA+GGG - chr1.2:46683374-46683393 MS.gene068798:intron 40.0%
TGGGGAAGAAGAAGGTTATA+GGG - chr1.2:46683452-46683471 MS.gene068798:intron 40.0%
TTGGGGAAGAAGAAGGTTAT+AGG - chr1.2:46683451-46683470 MS.gene068798:intron 40.0%
! AAACAGGTTTGAGGTTTCCT+CGG - chr1.2:46681688-46681707 MS.gene068798:intron 40.0%
! ACTCCCTCATTCATTTTCAC+AGG - chr1.2:46683052-46683071 MS.gene068798:CDS 40.0%
! CATTTTCACAGGTCATTCGT+TGG - chr1.2:46683063-46683082 MS.gene068798:CDS 40.0%
! CCGAAGCTTTCAATTTTCCT+CGG - chr1.2:46681721-46681740 MS.gene068798:intron 40.0%
! TAGTTTGCAAGTGGAGGATA+TGG - chr1.2:46683350-46683369 MS.gene068798:intron 40.0%
! TGCTGTTGACACATTAGCTT+CGG - chr1.2:46680902-46680921 MS.gene068798:intron 40.0%
! TGTGGGGTTTATTTCTTCGT+TGG - chr1.2:46681940-46681959 MS.gene068798:intron 40.0%
! TTTACTGCCGAAGTTTTCCT+CGG - chr1.2:46681747-46681766 MS.gene068798:intron 40.0%
! TTTGATTTCCCGTCTTCTTG+CGG + chr1.2:46682414-46682433 None:intergenic 40.0%
!! TAGAGAGGTTAGTTTGCAAG+TGG - chr1.2:46683341-46683360 MS.gene068798:intron 40.0%
AAGGGAATTGGGGAAGAAGA+AGG - chr1.2:46683444-46683463 MS.gene068798:intron 45.0%
AATGAACACCGCAAGAAGAC+GGG - chr1.2:46682403-46682422 MS.gene068798:intron 45.0%
AATTCGGCAGTTAACTGCTG+AGG - chr1.2:46681012-46681031 MS.gene068798:intron 45.0%
AGGAGAAGATGGAAGGGAAT+TGG - chr1.2:46683432-46683451 MS.gene068798:intron 45.0%
ATTCGGCAGTTAACTACCGA+AGG - chr1.2:46681794-46681813 MS.gene068798:intron 45.0%
ATTCGGCAGTTAACTACCGA+AGG + chr1.2:46681813-46681794 None:intergenic 45.0%
CATCTTCTCATGTCTTTCGC+TGG - chr1.2:46680016-46680035 MS.gene068798:intron 45.0%
CCTTATGGCATAACCTTTCC+CGG - chr1.2:46680629-46680648 MS.gene068798:intron 45.0%
CGTGAATGGAAGGGATAGTT+TGG - chr1.2:46683383-46683402 MS.gene068798:intron 45.0%
CTGTTTGCAACGGTGGTTTA+CGG - chr1.2:46683246-46683265 MS.gene068798:intron 45.0%
GAAGGTAGGAGAAGATGGAA+GGG - chr1.2:46683426-46683445 MS.gene068798:intron 45.0%
GAGAAGATGGAAGGGAATTG+GGG - chr1.2:46683434-46683453 MS.gene068798:intron 45.0%
GGAGAAGATGGAAGGGAATT+GGG - chr1.2:46683433-46683452 MS.gene068798:intron 45.0%
GGAGAATATGGAGGTTAGAG+AGG - chr1.2:46683326-46683345 MS.gene068798:intron 45.0%
TCCAGAGACCATGGATATTC+CGG + chr1.2:46682326-46682345 None:intergenic 45.0%
TTCGGCAGTTAACTACCGAA+GGG - chr1.2:46681795-46681814 MS.gene068798:intron 45.0%
TTCGGCAGTTAACTACCGAA+GGG + chr1.2:46681814-46681795 None:intergenic 45.0%
TTGCAAGTGGAGGATATGGA+TGG - chr1.2:46683354-46683373 MS.gene068798:intron 45.0%
! AAAGAGGGCACAAAGGAGAT+TGG - chr1.2:46683512-46683531 MS.gene068798:intron 45.0%
! CTGCAGCCGGTTTCATAATT+CGG + chr1.2:46680976-46680995 None:intergenic 45.0%
! CTGGTTCTTGTACTTCTCTC+AGG - chr1.2:46680035-46680054 MS.gene068798:intron 45.0%
! CTTCATTGAGGGGTGGTTTT+GGG + chr1.2:46682585-46682604 None:intergenic 45.0%
! GGTAATTTTGCGTAAGGCGT+TGG - chr1.2:46683404-46683423 MS.gene068798:intron 45.0%
! TCTTCATTGAGGGGTGGTTT+TGG + chr1.2:46682586-46682605 None:intergenic 45.0%
! TTGACACATTAGCTTCGGCT+AGG - chr1.2:46680907-46680926 MS.gene068798:intron 45.0%
! TTGTTGTTCGTCGTCTTGTG+CGG + chr1.2:46682442-46682461 None:intergenic 45.0%
!! AAAAACTAGGACCGGCTTGT+TGG - chr1.2:46682616-46682635 MS.gene068798:intron 45.0%
!! AGAGGTTAGTTTGCAAGTGG+AGG - chr1.2:46683344-46683363 MS.gene068798:intron 45.0%
!! GGTGAAGTTGCTGTTTGCAA+CGG - chr1.2:46683236-46683255 MS.gene068798:intron 45.0%
!!! ATTTTGCGTAAGGCGTTGGA+AGG - chr1.2:46683408-46683427 MS.gene068798:intron 45.0%
!! TAAAGAATTAAATTTAATTA+AGG - chr1.2:46681623-46681642 MS.gene068798:intron 5.0%
!!! TTAATTCTTTAATTATTTTA+TGG + chr1.2:46681614-46681633 None:intergenic 5.0%
ACCGGAATATCCATGGTCTC+TGG - chr1.2:46682322-46682341 MS.gene068798:intron 50.0%
ACTTCGGCAGTAAACTACCG+AGG + chr1.2:46681741-46681760 None:intergenic 50.0%
ATTGTTAGGGCTGCAAGCTG+AGG - chr1.2:46680499-46680518 MS.gene068798:intron 50.0%
CCACCCCTCAATGAAGAAAC+TGG - chr1.2:46682589-46682608 MS.gene068798:intron 50.0%
CCAGTTTCTTCATTGAGGGG+TGG + chr1.2:46682592-46682611 None:intergenic 50.0%
CCGGGAAAGGTTATGCCATA+AGG + chr1.2:46680632-46680651 None:intergenic 50.0%
CGTTGGAAGGTAGGAGAAGA+TGG - chr1.2:46683421-46683440 MS.gene068798:intron 50.0%
GATGATGAGGGGGTGATTTC+AGG - chr1.2:46682548-46682567 MS.gene068798:intron 50.0%
GATGTTGGCGGAGGAGAATA+TGG - chr1.2:46683314-46683333 MS.gene068798:intron 50.0%
GGAAGGTAGGAGAAGATGGA+AGG - chr1.2:46683425-46683444 MS.gene068798:intron 50.0%
GGTTTACGGAGAAACAGCGA+CGG - chr1.2:46683260-46683279 MS.gene068798:intron 50.0%
TCGGCAGTTAACTACCGAAG+GGG - chr1.2:46681796-46681815 MS.gene068798:intron 50.0%
TCTACCGTCGGAGAATCTTC+CGG + chr1.2:46680663-46680682 None:intergenic 50.0%
TGGTTGTCTGCCTCATTGTG+TGG - chr1.2:46682012-46682031 MS.gene068798:intron 50.0%
! AATCTTCCGGCAGGTTTTCC+GGG + chr1.2:46680650-46680669 None:intergenic 50.0%
! GAATCTTCCGGCAGGTTTTC+CGG + chr1.2:46680651-46680670 None:intergenic 50.0%
! GTGTAGTGTGGTGGTGATGT+TGG - chr1.2:46683299-46683318 MS.gene068798:intron 50.0%
! TAGTGTGGTGGTGATGTTGG+CGG - chr1.2:46683302-46683321 MS.gene068798:intron 50.0%
!! GAAGTTGCTGTTTGCAACGG+TGG - chr1.2:46683239-46683258 MS.gene068798:intron 50.0%
ACCTTTCCCGGAAAACCTGC+CGG - chr1.2:46680641-46680660 MS.gene068798:intron 55.0%
CCTCGGTAGTTAACTGCAGC+CGG + chr1.2:46681783-46681764 None:intergenic 55.0%
CGTTGCAGATCCAGAGACCA+TGG + chr1.2:46682335-46682354 None:intergenic 55.0%
GTTGGCGGAGGAGAATATGG+AGG - chr1.2:46683317-46683336 MS.gene068798:intron 55.0%
TCGGCTGCAGTTAACTACCG+AGG + chr1.2:46681767-46681786 None:intergenic 55.0%
!! TAGGACCGGCTTGTTGGAGA+GGG - chr1.2:46682622-46682641 MS.gene068798:intron 55.0%
!! TGCGTAAGGCGTTGGAAGGT+AGG - chr1.2:46683412-46683431 MS.gene068798:intron 55.0%
AAGGCGGTGAACGTGTCGAG+TGG - chr1.2:46683180-46683199 MS.gene068798:intron 60.0%
CCGGCTGCAGTTAACTACCG+AGG - chr1.2:46680986-46681005 MS.gene068798:intron 60.0%
CCTGCCGGAAGATTCTCCGA+CGG - chr1.2:46680656-46680675 MS.gene068798:intron 60.0%
GAACGTGTCGAGTGGCAAGG+CGG - chr1.2:46683188-46683207 MS.gene068798:intron 60.0%
GCTTCGGCAGTTAACTGCCG+AGG + chr1.2:46681708-46681727 None:intergenic 60.0%
GGAGGTGGCGTTGTGTAGTG+TGG - chr1.2:46683287-46683306 MS.gene068798:intron 60.0%
GGTGAACGTGTCGAGTGGCA+AGG - chr1.2:46683185-46683204 MS.gene068798:intron 60.0%
GGTGGCGTTGTGTAGTGTGG+TGG - chr1.2:46683290-46683309 MS.gene068798:intron 60.0%
! TCCGGCAGGTTTTCCGGGAA+AGG + chr1.2:46680645-46680664 None:intergenic 60.0%
! TGTGGTGGTGATGTTGGCGG+AGG - chr1.2:46683305-46683324 MS.gene068798:intron 60.0%
!! ACCGGCTTGTTGGAGAGGGA+GGG - chr1.2:46682626-46682645 MS.gene068798:intron 60.0%
!! CTAGGACCGGCTTGTTGGAG+AGG - chr1.2:46682621-46682640 MS.gene068798:intron 60.0%
AGAAACAGCGACGGCGACGG+AGG - chr1.2:46683269-46683288 MS.gene068798:intron 65.0%
CCCCTCCCTCTCCAACAAGC+CGG + chr1.2:46682630-46682649 None:intergenic 65.0%
CCGTCGGAGAATCTTCCGGC+AGG + chr1.2:46680659-46680678 None:intergenic 65.0%
CGGAGAAACAGCGACGGCGA+CGG - chr1.2:46683266-46683285 MS.gene068798:intron 65.0%
TGGAGGTGGTGCAGCGGAGT+GGG - chr1.2:46683211-46683230 MS.gene068798:intron 65.0%
!! CCGGCTTGTTGGAGAGGGAG+GGG - chr1.2:46682627-46682646 MS.gene068798:intron 65.0%
!! GACCGGCTTGTTGGAGAGGG+AGG - chr1.2:46682625-46682644 MS.gene068798:intron 65.0%
AACAGCGACGGCGACGGAGG+TGG - chr1.2:46683272-46683291 MS.gene068798:intron 70.0%
AGGCGGTGGAGGTGGTGCAG+CGG - chr1.2:46683205-46683224 MS.gene068798:intron 70.0%
CGTGTCGAGTGGCAAGGCGG+TGG - chr1.2:46683191-46683210 MS.gene068798:intron 70.0%
GAGTGGCAAGGCGGTGGAGG+TGG - chr1.2:46683197-46683216 MS.gene068798:intron 70.0%
GGAGGTGGTGCAGCGGAGTG+GGG - chr1.2:46683212-46683231 MS.gene068798:intron 70.0%
GTCGAGTGGCAAGGCGGTGG+AGG - chr1.2:46683194-46683213 MS.gene068798:intron 70.0%
GTGGAGGTGGTGCAGCGGAG+TGG - chr1.2:46683210-46683229 MS.gene068798:intron 70.0%
GGTGGTGCAGCGGAGTGGGG+AGG - chr1.2:46683215-46683234 MS.gene068798:intron 75.0%


Chromosome Type Strat End Strand Name
chr1.2 gene 46679993 46683596 46679993 ID=MS.gene068798
chr1.2 mRNA 46679993 46683596 46679993 ID=MS.gene068798.t1;Parent=MS.gene068798
chr1.2 exon 46683533 46683596 46683533 ID=MS.gene068798.t1.exon1;Parent=MS.gene068798.t1
chr1.2 CDS 46683533 46683596 46683533 ID=cds.MS.gene068798.t1;Parent=MS.gene068798.t1
chr1.2 exon 46682888 46683082 46682888 ID=MS.gene068798.t1.exon2;Parent=MS.gene068798.t1
chr1.2 CDS 46682888 46683082 46682888 ID=cds.MS.gene068798.t1;Parent=MS.gene068798.t1
chr1.2 exon 46680124 46680411 46680124 ID=MS.gene068798.t1.exon3;Parent=MS.gene068798.t1
chr1.2 CDS 46680124 46680411 46680124 ID=cds.MS.gene068798.t1;Parent=MS.gene068798.t1
chr1.2 exon 46679993 46680033 46679993 ID=MS.gene068798.t1.exon4;Parent=MS.gene068798.t1
chr1.2 CDS 46679993 46680033 46679993 ID=cds.MS.gene068798.t1;Parent=MS.gene068798.t1
Gene Sequence

>MS.gene068798

ATGGACTCGTATAAGCAACTTTTCATCTTCTCATGTCTTTCGCTGGTTCTTGTACTTCTCTCAGGTATGTATGATCATGAATTTATCATCATGAAATATTAATATATAATTTTTAGTACAAGTAGCACAAGTATATACTCCTATATCTCAAAAACAAACATGAAGTAAAACAAAATGTCACTATAGCTAAAAAACACCATGTGTATGTGTATGATTTTCAGATGTTTCAATATACTTTAATAGAATGGATTTTGCATCTACAACTAGTTTTAGTCAAAAGAATTACAAAATCAATTTTTGTGAGTGTAAATAATCAAACACACAATACAATATAGTATTTTGGTGTGAATCAGGTATCAACTGTGTGCAACTGCAAAGATTAATCACTCGAATAATTACAATCAACCTGCAATACATTCCCCTTTTATTTTAACTTGTTCCCATTGATTTTTCTTAATTAATATTAGTTAATAAAAAACTGAAACTAATTGTACATCTTGTTGTTCATTGTTAGGGCTGCAAGCTGAGGCAAGTCGTCACCTCAAATATCATCCTACAAAAGAATTGTTCGTTTTTGGAGACTCTTATGTTGATACCGGCAACACCCAAAAAAGTAAACCTGGTTCATGGAAAGAACCTTATGGCATAACCTTTCCCGGAAAACCTGCCGGAAGATTCTCCGACGGTAGAGTTTTAACTGACTTCATTGGTACGTAACCTATTTCACCCATCTCTCTCTAATGCTATTAACATAATCAACTGGAACATTGCAAAGTACATGCTTTTTTCTTTCTTTCTCTTTTCTTGGTACAAAAAGTGTACGCTTTTTAATTAACTTATTTTGTTTATATATGTAGTTTTCTAGCTTTCACATGAAAAATTATGCGTTTCGAATTAATTCAGGAAAATTGCTGTTGACACATTAGCTTCGGCTAGGACACACATGTAAAAGACGTTTTTATCCCTTCGGTAGTTAACTGCCGAATTATGAAACCGGCTGCAGTTAACTACCGAGGAAAAATTCGGCAGTTAACTGCTGAGGAAATCTGAAAACTTCGGCAGTTAACTGCCGAAGAAACCTCAAACCTGTTTTTTTTTTTTTGACAAAAACCATTAATTCTTTTTATTCTTTAAACATAAATTTTCCTCAATTAAATTTAATTCTTTAATCCTTTTAAGAAATTAAACATAATTCTTTTTATGATTTCATTCATGTGATTTTGTTGCCATAAATGAAGAAATACGAGAGATGAATAATATCTGCAATCAGTAGTTAATGAACCTAAAATGATGATTCAATAAAAAAAATGCAACAACAAAAACGTTACAAATGATAGAATAATTATATTTGTAATTATTAGTAATACCTTTTTTTTTGTACAAATAAAACCACTTTTCTATTCTTAAAAAAAAACCCCCTCTTTTTAATTAAGAAACGTGATTGAATATGTAGTAATTATAGGATCTCATATTTTTTTATTGATGGCAACAAAATTATATGAATGAAATCAACAACTTTATAAAAAGAATCGTGTATTTAATGGCAACAAAATCCATATTTCTTCATTATGGCAACAAAATCACATTAATGAAATCATAAAAAGAATTATGTTTAATTCCATAAAATAATTAAAGAATTAAATTTAATTAAGGAAAATTTAGGTTTAAAGAATTAATGGTTTTTGTAAAAAAAAAAAACAGGTTTGAGGTTTCCTCGGCAGTTAACTGCCGAAGCTTTCAATTTTCCTCGGTAGTTTACTGCCGAAGTTTTCCTCGGTAGTTAACTGCAGCCGATTTTATAATTCGGCAGTTAACTACCGAAGGGGTAAAAACGTCTTTTACATGTGTGTCCTACTCAAAGCTAATGTGTCAACAACAATTTTCTTAATTCAGATGCTTTAGTTCTATTACCGTATTATATTTCTCTATTTATTATAAGTTTTGAGATGTGGGGTTTATTTCTTCGTTGGCTTGCCACTTTACCTTTCTTGTGCTTTTATCCATGATATATTTTATATTTGGTTGTCTGCCTCATTGTGTGGTGATTGTGTTGCCTATTTTCGTATATTCAATTTTTGTTTAACATTATCACGTTTCACGTAATTTGACTAAGAGCATCTTTGATAACAGTTTTTTTTTTTTTTTTTGCATATAAGTAAGTTTTTTTTTTGACAAAAACAAATTGATATTCATTCATTCAAATCGAGAGATTACATCATTCAACACCGCTAAAAACGTAAAGGATGAATCTGCAAACAAACTCACAGCATCCAAGTTAATAGCATATAACGGCATAATGCCTACAAAAATATATGATAAAATTAAAGTGACCGGAATATCCATGGTCTCTGGATCTGCAACGTTGACGCCCAAATCTTTGATTGAAAAATCGATCTTTCAAGATGAATAAAATGAACACCGCAAGAAGACGGGAAATCAAACAGCGCCGCACAAGACGACGAACAACAAACCATCACACTTAGATGATGAAATCACAATGAAAAAACCTAGATCTATGTGAAAATCACTTATTTAGATTGAAACAGAGATAAAAAGATGATGAGGGGGTGATTTCAGGTCAAAAATTGACCCAAAACCACCCCTCAATGAAGAAACTGGAAGTAAAAACTAGGACCGGCTTGTTGGAGAGGGAGGGGAAGAGTGAGAGAGAAAATGAAGTGTTGTTGCATATAAGTAAGTTATGCTTAGTTAATATCTCTTTTAGAGAATGATTACAAAGCATTCTTAATCGGTAGTAAGTGAGAGAAAATGCTTATACAAACATACTCTCTCTCCTTCAATATGTGAATCAGATAAATAATTATTTTTTAAAACAAGTTACAATTATTGTGAAAAAAACAGTTATTGTTGACATGTAATGATGTGTATTGATGATAATGAGATCCACTAAATAGATTTTTAGAAGTGTTGCATTAGAGGATTTGATGCTTATTAGGAATTGATATTTAAAAATTATAAAAGAGTGGCGTATGCACATGAAACTTGTTTAAAAACCCATTTTAAAATAGTTTTCTATTGGAGATGGTCTATACATATATACTCCCTCATTCATTTTCACAGGTCATTCGTTGGTTTTAAAGTTAAATACAATATTTTTTGATGAAAAAAGTTATATACAATACAATATTAATTATAATTTTATTAATATTTTTCTTAGTATTTAGACAAGGCGGTGAACGTGTCGAGTGGCAAGGCGGTGGAGGTGGTGCAGCGGAGTGGGGAGGTGAAGTTGCTGTTTGCAACGGTGGTTTACGGAGAAACAGCGACGGCGACGGAGGTGGCGTTGTGTAGTGTGGTGGTGATGTTGGCGGAGGAGAATATGGAGGTTAGAGAGGTTAGTTTGCAAGTGGAGGATATGGATGGAAAACACGTGAATGGAAGGGATAGTTTGGTAATTTTGCGTAAGGCGTTGGAAGGTAGGAGAAGATGGAAGGGAATTGGGGAAGAAGAAGGTTATAGGGAATTCGTAAAGAAGAAGAAAGAAAGGGAGGAAAGAAAAAAGAGGGCACAAAGGAGATTGGATATGATGTGTTTGCTTACAGGTCTTGCGTCGTTGACCTTCATTGCACTCTTTGATTTGTGA

Protein sequence

>MS.gene068798.t1

MDSYKQLFIFSCLSLVLVLLSGLQAEASRHLKYHPTKELFVFGDSYVDTGNTQKSKPGSWKEPYGITFPGKPAGRFSDGRVLTDFIDKAVNVSSGKAVEVVQRSGEVKLLFATVVYGETATATEVALCSVVVMLAEENMEVREVSLQVEDMDGKHVNGRDSLVILRKALEGRRRWKGIGEEEGLASLTFIALFDL